LARP4

General Information

Gene Name       : LARP4
Gene ID             : ENSG00000161813.21
Essential Gene : No

Functions

Localization(RBPImage: LARP4)

Domains (AlphaFold: LARP4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LARP4ENSG00000161813.2132.8334.8633.84ENCSR000AEF
HepG2LARP4ENSG00000161813.2118.5733.6326.10ENCSR985KAT
K562LARP4ENSG00000161813.2140.6849.1244.90ENCSR000AEO

Assays

4 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 461ENCSR888YTTLARP4K562ReleasedENCAB580XQQENCSR679NKE  
eCLIPeCLIP: 558ENCSR805SRNLARP4HepG2ReleasedENCAB580XQQENCSR192PUP  
knockdown followed by RNA-seq LARP4-BGKLV28-K562ENCSR866XLILARP4K562ReleasedENCSR164MUK   shRNAKD% = 75.2,66.2
knockdown followed by RNA-seq LARP4-BGHLV20-HepG2ENCSR744PAQLARP4HepG2ReleasedENCSR135LXL   shRNAKD% = 64.0,61.0






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
LARP4461K562ENCSR888YTTENCSR679NKEENCAB580XQQA303-900A1ReleasedENCODE3
LARP4558HepG2ENCSR805SRNENCSR192PUPENCAB580XQQA303-900A1ReleasedENCODE3


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
LARP4ENCAB580XQQA303-900A1Released, ENCODE3Released, ENCODE3BGHLV20-41, Released, ENCODE3BGKLV28-25, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
LARP4K562shRNAENCSR866XLIENCSR164MUKLARP4_BGKLV28-25,LARP4_BGKLV28-26non-target_BGKLV28-1,non-target_BGKLV28-275.2,66.2ReleasedENCODE3
LARP4HepG2shRNABGHLV18-17,BGHLV18-18BGHLV18-1,BGHLV18-2NotSatisfiedENCODE3
LARP4HepG2shRNAENCSR744PAQENCSR135LXLLARP4_BGHLV20-41B,LARP4_BGHLV20-42BNT_BGHLV20-1B,NT_BGHLV20-2B64.0,61.0ReleasedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    LARP4: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Cytoplasm
  • Compartment/Organelle
  • Mitochondria












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    LARP4Product_ID: A303-900A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: LARP4-human    		 HepG2_Bethyl_A303-900A_1_LARP4.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using LARP4 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-LARP4 antibody (lanes under 'LARP4').
    		 LARP4_Secondary_Western.png<br>Caption: Western blot following shRNA against LARP4 in K562 and HepG2 whole cell lysate using LARP4 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against LARP4. Lanes 5-8 follow the same pattern, but in HepG2. LARP4 protein appears as the green band, Tubulin serves as a control and appears in red.
    		 K562_Bethyl_A303-900A_1_LARP4.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using LARP4 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-LARP4 antibody (lanes under 'LARP4').
    		 LARP4_Secondary_Western.png<br>Caption: Western blot following shRNA against LARP4 in K562 and HepG2 whole cell lysate using LARP4 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against LARP4. Lanes 5-8 follow the same pattern, but in HepG2. LARP4 protein appears as the green band, Tubulin serves as a control and appears in red.








    RNA Targets
    • LARP4 protein binds to 6,088 RNA regions.  





    Proteins bound to RNA
    • LARP4 RNA is bound by 29 proteins.  






    LARP4 protein has 6,088 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 6,088 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    LARP4chr174160584341605874-3.902558.88471HepG2ETV43'-UTR,intron-Distal,intron-Proximal
    LARP4chr203428767034287682+5.3248351.92533HepG2ROMO1CDS
    LARP4chr1161192158161192170-5.27244400.00000HepG2APOA23'-UTR,intron-Distal,intron-Proximal
    LARP4chr1753364165336467-3.3361911.45519HepG2C1QBPCDS,intron-Distal,intron-Proximal
    LARP4chr8124026060124026127-3.099813.27682HepG2DERL13'-UTR,intron-Distal
    LARP4chr89126837191268417+3.737955.03277K562LINC00534intron-Distal
    LARP4chr3186338743186338746+3.73866400.00000HepG2AHSG3'-UTR
    LARP4chr1945432404543331-3.5024222.35198HepG2SEMA6B3'-UTR,intron-Distal
    LARP4chr9127620268127620313-3.1115230.83482HepG2RPL353'-UTR,CDS,intron-Distal
    LARP4chr168584034285840367+3.3258411.68351HepG2COX4I13'-UTR,CDS,intron-Proximal
    LARP4chr165664324056643297+3.7957319.13563K562MT2A3'-UTR,CDS
    LARP4chr174115200241152011+3.3514137.02035HepG2RPL275'-UTR,CDS,intron-Distal
    LARP4chr171634514916345180+3.163348.40370K562C17orf76-AS1intron-Distal
    LARP4chr116562340465623440-4.232428.81208HepG2CFL1CDS,intron-Distal,intron-Proximal
    LARP4chr8101165601101165704+3.977678.01516HepG2POLR2K3'-UTR
    LARP4chr34906048949060570+3.555888.88471HepG2NDUFAF3CDS
    LARP4chr14597694945977008-3.777057.57259K562PRDX13'-UTR,CDS,intron-Distal
    LARP4chr12123995791123995890-5.7585212.36539HepG2RILPL1intron-Distal
    LARP4chr1154248134154248211+4.157987.16588HepG2HAX13'-UTR,CDS
    LARP4chr195184843651848486-4.8982627.23852HepG2ETFB3'-UTR,CDS,intron-Distal,intron-Proximal
    LARP4chr194236484442364852+4.07627400.00000HepG2RPS19CDS,intron-Proximal
    LARP4chr142181976521819867-3.075453.64166HepG2SUPT16H3'-UTR,intron-Distal
    LARP4chr63338504433385086-3.198017.34292HepG2CUTA3'-UTR,CDS,intron-Distal
    LARP4chr154500984045009858+3.020998.64495HepG2B2M3'-UTR
    LARP4chr2241075637241075685-3.223776.16969HepG2MYEOV2CDS,intron-Distal,intron-Proximal
    LARP4chr161879941018799420-3.5386846.51086HepG2RP11-1035H13.3, RPS15A5'-UTR,CDS,intron-Distal
    LARP4chr195599822355998282+4.850736.69272HepG2NAT14CDS,intron-Distal,intron-Proximal
    LARP4chr10135176113135176175-3.242516.22791HepG2ECHS13'-UTR,intron-Distal
    LARP4chr28513354385133628+4.59464400.00000HepG2TMSB103'-UTR,CDS
    LARP4chr117511184375111863+3.4318624.77861HepG2RPS35'-UTR,CDS,intron-Distal,intron-Proximal
    LARP4chr34939767649397711-3.345745.55036HepG2RHOA3'-UTR,CDS,intron-Distal
    LARP4chr13660270736602809-3.528806.07797HepG2TRAPPC33'-UTR,CDS,intron-Distal,intron-Proximal
    LARP4chr162988263829882690-4.206976.31568HepG2SEZ6L23'-UTR,intron-Distal
    LARP4chr79956469699564750-3.038685.83767HepG2AZGP13'-UTR,CDS,intron-Distal,intron-Proximal
    LARP4chr177989105379891088-3.283507.65669HepG2PYCR13'-UTR,intron-Distal,intron-Proximal
    LARP4chr420456092045634+3.053263.02046HepG2C4orf48CDS
    LARP4chr125651043156510444+4.7215323.13617K562RPL415'-UTR,intron-Proximal
    LARP4chr6159057678159057776-3.334973.96118HepG2DYNLT13'-UTR,intron-Distal
    LARP4chr156907202769072074-4.034993.15159HepG2ANP32A3'-UTR,intron-Distal,intron-Proximal
    LARP4chr173689157336891654-4.774737.16588HepG2PCGF23'-UTR,CDS,intron-Distal
    LARP4chr22730914427309220+3.582704.36276HepG2EMILIN13'-UTR
    LARP4chr1110943949110944087-3.7708018.91176HepG2LAMTOR53'-UTR,intron-Distal
    LARP4chr157509497275095035+3.622014.92926HepG2CSK3'-UTR
    LARP4chr34915939349159484-3.110076.67252HepG2LAMB2CDS,intron-Distal,intron-Proximal
    LARP4chr63191966331919714+3.391688.28327HepG2CFB3'-UTR,CDS
    LARP4chr114773101477395-4.313996.03373HepG2SSU723'-UTR,intron-Distal
    LARP4chr2037344963734564-4.6993711.06468HepG2C20orf273'-UTR,intron-Distal
    LARP4chr203414521234145249+4.289508.89412HepG2ERGIC3CDS
    LARP4chr7158187934158187972-4.047223.43895HepG2PTPRN2intron-Distal
    LARP4chr5175816476175816528+5.108227.56355HepG2HIGD2A, ARL103'-UTR,CDS,intron-Distal
    LARP4chr12123997993123998094-5.3511337.90485HepG2RILPL15'-UTR,intron-Distal
    LARP4chr116408426564084294-3.4289430.80137HepG2TRMT1123'-UTR,intron-Distal
    LARP4chr3122078611122078683-3.143545.12659HepG2CCDC583'-UTR,intron-Distal,intron-Proximal
    LARP4chr63162584431625859+3.3072218.96993HepG2APOM3'-UTR,CDS
    LARP4chr168971225189712308-4.223186.31568HepG2CHMP1A3'-UTR,intron-Distal,intron-Proximal
    LARP4chr1748491464849159-5.5264739.88041HepG2PFN13'-UTR,intron-Distal
    LARP4chr108591206185912108+3.516264.08867HepG2GHITM3'-UTR,CDS
    LARP4chr1173456872173456921+3.1746810.87497HepG2PRDX6CDS,intron-Proximal
    LARP4chr1110946545110946626-4.322847.45053HepG2LAMTOR5CDS,intron-Distal
    LARP4chr34915867949158780-3.4614312.09393HepG2LAMB2CDS,intron-Distal,intron-Proximal
    LARP4chr7137564452137564503-3.986119.68041HepG2CREB3L23'-UTR,intron-Distal
    LARP4chr149601040696010507+3.010816.50130HepG2GLRX53'-UTR,CDS
    LARP4chr163008125230081269+3.0224635.04516HepG2ALDOACDS
    LARP4chr114760586847605925+3.661873.81620HepG2NDUFS3CDS
    LARP4chr518144771814512+4.051006.88182HepG2NDUFS6CDS
    LARP4chr168583331285833358+4.1797511.97163HepG2COX4I15'-UTR,intron-Distal
    LARP4chr195906715259067232-3.8502310.22807HepG2UBE2M3'-UTR,intron-Distal
    LARP4chr184730989747310105-3.507775.27408HepG2ACAA23'-UTR,intron-Distal
    LARP4chr1644329884433053+3.599816.89080HepG2VASN3'-UTR
    LARP4chr5172744168172744237-4.0884513.89640HepG2STC23'-UTR,intron-Distal
    LARP4chr1773073397307413-5.4540319.01650HepG2C17orf61-PLSCR3, TMEM256-PLSCR3, TMEM2565'-UTR,CDS,intron-Distal,intron-Proximal
    LARP4chr114640514146405253+5.27587400.00000HepG2MDK3'-UTR
    LARP4chr14132685841326958-5.111006.96706HepG2CITED43'-UTR
    LARP4chr74390618143906236-4.2179511.06468HepG2MRPS24, URGCP-MRPS243'-UTR,intron-Distal
    LARP4chr213303964133039688+5.0419014.40315HepG2SOD1CDS
    LARP4chr5176513989176514023+3.505559.65265HepG2FGFR45'-UTR,intron-Proximal
    LARP4chr191870487518704885-3.3105410.46226HepG2CRLF1CDS,intron-Distal
    LARP4chr6170844422170844493-3.5260311.87946HepG2PSMB1CDS,intron-Distal
    LARP4chr224207034642070378-3.883795.19325HepG2NHP2L13'-UTR,intron-Distal
    LARP4chr1622899172289977-6.182969.89682K562ECI13'-UTR,intron-Distal,intron-Proximal
    LARP4chr194946481149464894+3.5818015.74795HepG2BAX3'-UTR,CDS,intron-Proximal
    LARP4chr1153932510153932571-4.081986.31568HepG2SLC39A13'-UTR,intron-Distal,intron-Proximal
    LARP4chr191284147812841561-3.7972617.77687HepG2C19orf433'-UTR,intron-Distal
    LARP4chr194541244145412461+3.8691586.41218HepG2APOECDS
    LARP4chr724199922420024+4.325423.43895HepG2EIF3B3'-UTR
    LARP4chr5125880542125880643-3.520996.69112HepG2ALDH7A13'-UTR,intron-Distal
    LARP4chr124944416249444278-3.070834.45691HepG2KMT2DCDS,intron-Distal
    LARP4chr162885434228854394-3.7621817.91371HepG2TUFMCDS,intron-Distal
    LARP4chr137610064976100757-3.771965.75263HepG2COMMD63'-UTR,CDS,intron-Distal
    LARP4chr1765462706546325+3.591314.91517HepG2TXNDC173'-UTR,CDS,intron-Proximal
    LARP4chr25545982355459845+3.6490116.82530K562RPS27A5'-UTR,intron-Distal,intron-Proximal
    LARP4chr63325755433257658+3.954356.33102HepG2PFDN65'-UTR,CDS
    LARP4chr2024432812443335-3.7616540.84022HepG2SNRPB3'-UTR,CDS,intron-Distal,intron-Proximal
    LARP4chr1113244117113244170-4.120647.45053HepG2RHOC3'-UTR,CDS,intron-Distal,intron-Proximal
    LARP4chr1748491174849146-4.9358443.96891HepG2PFN13'-UTR,intron-Distal
    LARP4chr195470506554705129+4.0693030.76520HepG2RPS9CDS
    LARP4chr125611936456119410-6.0985833.28912HepG2CD633'-UTR,CDS,intron-Distal
    LARP4chr206236997262370026+3.879026.04895HepG2LIME1, RP4-583P15.15, RP4-583P15.143'-UTR,CDS,intron-Distal
    LARP4chr34972054549720579+3.903483.16434HepG2APEHCDS
    LARP4chr14105225859105225900+5.4644119.22875HepG2SIVA13'-UTR,intron-Distal




    29 proteins are bound to LARP4 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr125082165250821694+3'-UTR,5'-UTR,CDS,intron-Proximal3.859285.95764K562YBX3
    chr125087081550870845+3'-UTR3.271363.77257K562FAM120A
    chr125087239250872433+3'-UTR3.594554.38938K562TARDBP
    chr125082155250821689+3'-UTR,5'-UTR,CDS3.111079.80919HepG2BCLAF1
    chr125087220250872252+3'-UTR4.182093.22972K562TARDBP
    chr125087208750872163+3'-UTR4.3497911.57036K562TARDBP
    chr125085507650855141+3'-UTR,CDS,intron-Distal,intron-Proximal3.681656.81385HepG2BCLAF1
    chr125082154350821580+3'-UTR,5'-UTR,CDS,intron-Proximal3.196134.30396K562UCHL5
    chr125087050650870580+3'-UTR3.039415.83277K562FAM120A
    chr125087016250870285+3'-UTR4.3601616.87231K562TARDBP
    chr125079479750794836+5'-UTR,CDS,intron-Distal,intron-Proximal4.449927.70737HepG2PRPF8
    chr125079466850794812+5'-UTR,CDS,intron-Distal,intron-Proximal3.299907.39484K562DDX3X
    chr125084813850848199+CDS3.448824.74886HepG2BCLAF1
    chr125082421750824316+CDS,intron-Proximal3.118255.07422K562SF3B4
    chr125083422950834247+CDS3.432769.67260HepG2BCLAF1
    chr125083151750831578+CDS,intron-Proximal4.498595.79432HepG2BCLAF1
    chr125085639350856416+CDS,intron-Proximal3.119915.44868K562ZNF622
    chr125085496750854998+CDS,intron-Distal3.020477.71758K562YBX3
    chr125082930550829373+CDS3.848453.50232K562IGF2BP1
    chr125085637150856428+CDS,intron-Proximal4.778907.46483HepG2PRPF8
    chr125086719750867317+CDS,intron-Proximal3.259094.91547HepG2GRWD1
    chr125085636450856396+CDS,intron-Proximal3.636093.68471HepG2BCLAF1
    chr125086719850867282+CDS4.372827.97334HepG2BCLAF1
    chr125086719550867273+CDS,intron-Proximal3.735539.56042K562ZNF622
    chr125084735250847433+CDS,intron-Distal3.424464.63751K562IGF2BP1
    chr125082937750829409+CDS,intron-Proximal3.057443.85381HepG2BCLAF1
    chr125083422050834229+CDS,intron-Proximal3.551606.60490HepG2BCLAF1
    chr125086721250867299+CDS3.644587.45042K562UCHL5
    chr125086087150860905+CDS,intron-Proximal4.926085.94412K562ZNF622
    chr125082927250829313+CDS4.322827.09561HepG2BCLAF1
    chr125082284650822957+CDS,intron-Proximal3.223465.83656K562PRPF8
    chr125082283250822874+CDS,intron-Proximal4.946774.17466K562DDX24
    chr125086719750867285+CDS,intron-Proximal3.430743.24162HepG2G3BP1
    chr125083157850831622+CDS,intron-Proximal4.317308.94445HepG2BCLAF1
    chr125082426150824330+CDS,intron-Proximal3.894884.10517K562U2AF2
    chr125086074150860839+CDS,intron-Proximal3.219216.73886K562ZNF622
    chr125083424750834315+CDS3.237089.12012HepG2BCLAF1
    chr125082931350829377+CDS3.6091310.26109HepG2BCLAF1
    chr125081661550816665+intron-Distal3.916093.24242HepG2HNRNPC
    chr125085428450854349+intron-Distal3.274086.21552HepG2ILF3
    chr125085047950850485+intron-Distal4.90383400.00000HepG2PTBP1
    chr125083604450836210+intron-Distal3.153089.51000HepG2HNRNPL
    chr125084991250850001+intron-Distal3.837125.79195K562CSTF2T
    chr125084822050848324+intron-Distal,intron-Proximal3.340528.75128K562KHSRP
    chr125082955350829635+intron-Distal4.737429.27995K562PRPF8
    chr125085051150850555+intron-Distal7.23861400.00000K562PTBP1
    chr125083614950836231+intron-Distal4.256804.42851K562HNRNPL
    chr125079483650794857+intron-Distal,intron-Proximal4.331083.94654HepG2PRPF8
    chr125085054950850566+intron-Distal4.3145557.64148HepG2DKC1
    chr125083640550836464+intron-Distal4.562836.74598HepG2QKI
    chr125085051850850521+intron-Distal5.87697400.00000HepG2PTBP1
    chr125085046950850484+intron-Distal6.05896400.00000K562PTBP1
    chr125085529050855396+intron-Distal4.166584.84037HepG2CSTF2
    chr125079511550795221+intron-Distal,intron-Proximal4.086893.57264HepG2GTF2F1
    chr125085044850850468+intron-Distal4.85618400.00000HepG2PTBP1
    chr125085044450850564+intron-Distal3.55683400.00000HepG2NOLC1
    chr125085051150850515+intron-Distal5.75253400.00000HepG2PTBP1
    chr125084493350845071+intron-Distal4.385095.05488HepG2QKI
    chr125086760350867659+intron-Distal5.474316.73801K562GTF2F1
    chr125082890050828991+intron-Distal5.390229.61540K562KHSRP
    chr125080199250802038+intron-Distal3.870243.21162HepG2HNRNPC
    chr125079511750795258+intron-Distal,intron-Proximal3.710728.80665HepG2FAM120A
    chr125085173150851781+intron-Distal3.963965.47956HepG2ILF3
    chr125079511950795200+intron-Distal,intron-Proximal3.579314.69054HepG2CSTF2T
    chr125083634850836464+intron-Distal3.9058810.92661K562QKI
    chr125085049050850511+intron-Distal5.72544400.00000HepG2PTBP1
    chr125085051550850518+intron-Distal5.86574400.00000HepG2PTBP1
    chr125085049250850511+intron-Distal7.14062400.00000K562PTBP1
    chr125085046850850479+intron-Distal4.90505400.00000HepG2PTBP1
    chr125083626750836348+intron-Distal5.9725810.62660K562QKI
    chr125080031250800343+intron-Distal4.349855.27745HepG2ILF3
    chr125082235250822435+intron-Distal3.406003.35377HepG2QKI
    chr125082989450829964+intron-Distal3.990433.69425K562TARDBP
    chr125079506650795244+intron-Distal,intron-Proximal4.4626815.68007HepG2PRPF4
    chr125085048450850492+intron-Distal6.13501400.00000K562PTBP1
    chr125082246950822523+intron-Distal4.082314.14103K562KHSRP
    chr125081899350819087+intron-Distal3.751803.42844K562KHSRP
    chr125082998950830042+intron-Distal4.629984.76464K562EIF4G2
    chr125082295050822992+intron-Distal,intron-Proximal3.856813.66668K562KHSRP
    chr125083626150836386+intron-Distal3.9323510.58119HepG2QKI
    chr125082899150829064+intron-Distal3.995319.70788K562KHSRP
    chr125082955250829610+intron-Distal4.444444.02766HepG2HNRNPC
    chr125085052150850548+intron-Distal5.90556400.00000HepG2PTBP1
    chr125085044750850469+intron-Distal6.14122400.00000K562PTBP1
    chr125080029650800312+intron-Distal4.310855.27745HepG2ILF3
    chr125082999050830106+intron-Distal4.122444.13641K562TARDBP
    chr125080116050801223+intron-Distal4.830005.58765HepG2QKI
    chr125085048650850490+intron-Distal4.78349400.00000HepG2PTBP1
    chr125085044050850448+intron-Distal4.67246400.00000HepG2PTBP1
    chr125080827850808387+intron-Distal4.440314.38124HepG2ILF3
    chr125082299250823098+intron-Distal3.081304.56635K562KHSRP
    chr125085042350850440+intron-Distal4.67419400.00000HepG2PTBP1
    chr125079511750795252+intron-Distal,intron-Proximal5.887549.73136K562GTF2F1
    chr125079758150797664+intron-Distal3.769409.94478K562KHSRP
    chr125083004250830116+intron-Distal5.072256.84138K562EIF4G2
    chr125079513450795189+intron-Distal,intron-Proximal3.514944.05280K562CSTF2T
    chr125079514650795207+intron-Distal,intron-Proximal4.098093.02324K562XRN2
    chr125083633250836418+intron-Distal4.227453.97888HepG2HNRNPL
    chr125086737850867400+intron-Proximal4.537533.25089HepG2AQR
    chr125086731950867405+intron-Proximal4.3489618.07594K562AQR
    chr125086735850867378+intron-Proximal4.561993.25089HepG2AQR
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein LARP4 and its RNA.



    Diffrential Expression
    • 5,051 differentially expressed genes after Knockdown/Knockout LARP4 protein.  





    • 124 RBPs can affect the levels of LARP4.  







    5,051 differentially expressed genes after Knockdown/Knockout LARP4 protein :

    Only display 100 entries as example. Please click "View All" button to see all 5,051 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    C1orf112ENSG00000000460.12253.65080433.91530-0.774604.641403.55830HepG2LARP4
    BADENSG00000002330.9303.96970132.593501.196808.005606.58370HepG2LARP4
    CASP10ENSG00000003400.10547.52750776.20240-0.503502.932702.07690HepG2LARP4
    CFLARENSG00000003402.153865.869102694.365600.520704.213203.18270HepG2LARP4
    TFPIENSG00000003436.107482.2383013997.32530-0.9036012.2129010.47960HepG2LARP4
    SLC7A2ENSG00000003989.122101.339306765.98240-1.6870036.8703033.87500HepG2LARP4
    SARM1ENSG00000004139.943.8628011.642401.913503.741802.77470HepG2LARP4
    POLDIP2ENSG00000004142.73226.876002258.518800.514704.043203.03560HepG2LARP4
    AK2ENSG00000004455.123108.043404619.59520-0.571805.055203.91970HepG2LARP4
    KDM1AENSG00000004487.113511.956705328.01820-0.601305.580304.38680HepG2LARP4
    HCCSENSG00000004961.10610.88800445.944700.453902.302201.55050HepG2LARP4
    LIG3ENSG00000005156.7791.436601298.18910-0.714006.155404.90740HepG2LARP4
    AC004381.6ENSG00000005189.15176.15350294.70240-0.742403.709602.74800HepG2LARP4
    SPPL2BENSG00000005206.121059.77480588.377700.848803.409402.48700HepG2LARP4
    WDR54ENSG00000005448.1292.63200260.12510-1.489606.648305.34680HepG2LARP4
    CROTENSG00000005469.7389.87260224.359800.797104.679503.59110HepG2LARP4
    KMT2EENSG00000005483.153367.358904461.32710-0.405902.819401.98260HepG2LARP4
    RHBDD2ENSG00000005486.121522.13260699.205101.122208.810907.32350HepG2LARP4
    GDE1ENSG00000006007.74342.482403104.556400.484003.718902.75580HepG2LARP4
    C19orf60ENSG00000006015.13168.8098085.442400.982304.013603.00990HepG2LARP4
    OSBPL7ENSG00000006025.7405.31940285.580100.505102.312601.55780HepG2LARP4
    AP2B1ENSG00000006125.124560.470906118.19590-0.423903.089102.20800HepG2LARP4
    CX3CL1ENSG00000006210.65446.971702306.080201.2399020.6337018.35110HepG2LARP4
    SPATA20ENSG00000006282.152791.964602051.940500.444202.701201.88190HepG2LARP4
    TNFRSF12AENSG00000006327.91478.45370588.274801.3294018.8229016.65760HepG2LARP4
    JHDM1DENSG00000006459.61511.824903320.93230-1.135306.574905.28210HepG2LARP4
    DBF4ENSG00000006634.3537.730001147.61610-1.093703.497402.56320HepG2LARP4
    IFRD1ENSG00000006652.91432.267701006.468000.508903.564802.62150HepG2LARP4
    COX10ENSG00000006695.6386.01270520.70720-0.431802.075601.36410HepG2LARP4
    PROM1ENSG00000007062.7611.43980944.51260-0.627404.470203.40400HepG2LARP4
    KIAA0100ENSG00000007202.104628.106605862.41170-0.341102.160501.43410HepG2LARP4
    GAS7ENSG00000007237.14238.17910146.172800.704302.174001.44590HepG2LARP4
    PAX6ENSG00000007372.1668.63480122.46210-0.835302.504701.71600HepG2LARP4
    RPUSD1ENSG00000007376.3447.73580195.558001.195003.761002.79040HepG2LARP4
    PIGQENSG00000007541.10642.06870348.459100.881605.832204.61650HepG2LARP4
    E2F2ENSG00000007968.697.17060258.73670-1.412909.476307.93870HepG2LARP4
    JARID2ENSG00000008083.91080.295301735.07970-0.683606.080204.84140HepG2LARP4
    CYB561ENSG00000008283.11133.5853063.289401.077603.565802.62190HepG2LARP4
    SPAG9ENSG00000008294.163311.605505010.31150-0.597405.532404.34410HepG2LARP4
    AASSENSG00000008311.10465.84280877.30280-0.913208.555907.08700HepG2LARP4
    PLEKHG6ENSG00000008323.11479.32470328.359600.545602.890402.04110HepG2LARP4
    NFIXENSG00000008441.121521.42890999.169600.606504.726703.63350HepG2LARP4
    IL32ENSG00000008517.125408.203102663.033501.0220014.5546012.68260HepG2LARP4
    PKD1ENSG00000008710.131721.612901088.110200.661803.026402.15470HepG2LARP4
    MAPK8IP2ENSG00000008735.10238.0118078.753001.5955010.642209.01090HepG2LARP4
    RHOBTB2ENSG00000008853.12958.95190509.700700.911708.621707.14440HepG2LARP4
    RPS20ENSG00000008988.55451.2440010001.43770-0.8756011.150009.47860HepG2LARP4
    CSDE1ENSG00000009307.1112187.4207017628.38880-0.532504.434103.37460HepG2LARP4
    MASP2ENSG00000009724.12468.23260304.633400.620102.534301.74090HepG2LARP4
    IYDENSG00000009765.1015.262901.100703.793502.947702.08980HepG2LARP4
    POMT2ENSG00000009830.71154.93890635.464700.861808.246506.80610HepG2LARP4
    VTA1ENSG00000009844.111595.499502908.55930-0.866305.284204.12530HepG2LARP4
    MLXIPLENSG00000009950.116260.179703961.959000.659904.319903.27600HepG2LARP4
    ZNF207ENSG00000010244.123568.317705324.01220-0.577305.178204.02930HepG2LARP4
    STARD3NLENSG00000010270.9552.96910803.73420-0.539503.363802.44790HepG2LARP4
    CD9ENSG00000010278.7676.59790496.599900.446102.316801.56120HepG2LARP4
    NCAPD2ENSG00000010292.83036.477906197.85740-1.0294014.8005012.91110HepG2LARP4
    IFFO1ENSG00000010295.15718.10300414.817200.791606.092804.85280HepG2LARP4
    GIPRENSG00000010310.429.0793072.12570-1.310503.314402.40420HepG2LARP4
    SEMA3GENSG00000010319.21221.24920846.313400.529003.676202.71970HepG2LARP4
    NISCHENSG00000010322.112657.895401804.441800.558604.635503.55310HepG2LARP4
    IDSENSG00000010404.131905.270301480.916700.363402.139001.41600HepG2LARP4
    CD4ENSG00000010610.585.82350231.57630-1.432008.951107.45330HepG2LARP4
    HFEENSG00000010704.1498.25750215.26690-1.131502.029301.32680HepG2LARP4
    FYNENSG00000010810.131203.851701625.29070-0.433002.789401.95570HepG2LARP4
    HIVEP2ENSG00000010818.41073.935301994.73220-0.893309.903008.33400HepG2LARP4
    LYPLA2ENSG00000011009.62215.430201376.346800.686606.287105.02520HepG2LARP4
    CLCN6ENSG00000011021.172518.411601944.141100.373302.320301.56440HepG2LARP4
    BTBD7ENSG00000011114.101462.272501104.079800.405302.396001.62720HepG2LARP4
    KAL1ENSG00000011201.619.298402.232403.111703.150902.26150HepG2LARP4
    MBTD1ENSG00000011258.111326.635702055.94110-0.632005.324704.15970HepG2LARP4
    UTP18ENSG00000011260.9816.504101175.26640-0.525503.300502.39080HepG2LARP4
    LARS2ENSG00000011376.5531.169401328.45520-1.3225018.4228016.28250HepG2LARP4
    ANLNENSG00000011426.62168.308005362.74190-1.3064010.615108.98610HepG2LARP4
    MAP4K3ENSG00000011566.103233.093604229.91470-0.387702.398101.62870HepG2LARP4
    BRCA1ENSG00000012048.15871.697401798.43540-1.044809.854508.29000HepG2LARP4
    CD22ENSG00000012124.1064.1116028.842501.152302.422101.64880HepG2LARP4
    SEMA3BENSG00000012171.138346.861203997.088401.0622012.9818011.20980HepG2LARP4
    NR1H4ENSG00000012504.91423.98070935.707400.605704.757303.65870HepG2LARP4
    UBR7ENSG00000012963.9578.89210973.74990-0.750306.188404.93760HepG2LARP4
    MAP4K5ENSG00000012983.71246.994101941.26140-0.638505.639604.44010HepG2LARP4
    MAN2B2ENSG00000013288.41753.216001173.270900.579404.509303.43880HepG2LARP4
    CLDN11ENSG00000013297.6216.34030349.83790-0.693403.610202.66200HepG2LARP4
    MVPENSG00000013364.141927.379601354.518600.508803.662502.70820HepG2LARP4
    CLK1ENSG00000013441.111636.933402468.86440-0.592904.978303.85100HepG2LARP4
    DDX11ENSG00000013573.12668.98250880.50360-0.396402.086701.37330HepG2LARP4
    GPRC5AENSG00000013588.570.95220120.27630-0.761402.158301.43230HepG2LARP4
    MAMLD1ENSG00000013619.967.0602024.354401.461203.483802.55180HepG2LARP4
    TACC3ENSG00000013810.141185.976002156.53970-0.862609.579808.03720HepG2LARP4
    POLA2ENSG00000014138.4221.38320363.84490-0.716802.390301.62240HepG2LARP4
    COX15ENSG00000014919.8735.635701009.95660-0.457202.699301.88010HepG2LARP4
    ZMYND11ENSG00000015171.141289.945602120.26710-0.716905.741304.53620HepG2LARP4
    NPC1L1ENSG00000015520.102244.831101202.834800.9001010.362908.76000HepG2LARP4
    NUDCD3ENSG00000015676.131551.580901123.708600.465403.112902.22890HepG2LARP4
    GLT8D1ENSG00000016864.121258.590601612.74800-0.357702.020201.31860HepG2LARP4
    RALBP1ENSG00000017797.71251.039202580.49280-1.0445013.8498012.02720HepG2LARP4
    CNTN1ENSG00000018236.109.181700.0000099999.999902.468201.68570HepG2LARP4
    WWTR1ENSG00000018408.102779.317104433.53270-0.673706.760605.44770HepG2LARP4
    AGPSENSG00000018510.83326.251204699.88720-0.498702.872102.02620HepG2LARP4
    ATP1A2ENSG00000018625.100.5114014.96770-4.871203.775302.80180HepG2LARP4
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    124 RBPs can affect the gene expression of LARP4 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    LARP4ENSG00000161813.161268.385101692.30740-0.416002.331101.46410HepG2ABCF1
    LARP4ENSG00000161813.161400.722301596.57660-0.188801.879001.36000HepG2ACO1
    LARP4ENSG00000161813.161044.530301309.44790-0.326102.265601.36270HepG2ADAR
    LARP4ENSG00000161813.161280.302301745.69740-0.447303.736602.82790HepG2ASCC1
    LARP4ENSG00000161813.162182.246701665.897600.389403.799703.11010HepG2BOP1
    LARP4ENSG00000161813.162367.975201466.497600.691209.421008.12080HepG2CALR
    LARP4ENSG00000161813.162084.995501658.531100.330002.449101.71780HepG2CIRBP
    LARP4ENSG00000161813.161256.416901596.26140-0.345405.498604.62070HepG2CKAP4
    LARP4ENSG00000161813.161211.964101855.03250-0.614103.891402.97800HepG2CNOT7
    LARP4ENSG00000161813.161304.870601811.38980-0.473205.325004.48600HepG2CELF1
    LARP4ENSG00000161813.161473.869701026.711900.521503.738302.66560HepG2DDX24
    LARP4ENSG00000161813.161633.592802021.05100-0.307102.003301.46230HepG2DDX3X
    LARP4ENSG00000161813.161073.300501318.61920-0.297002.534301.85660HepG2DNAJC21
    LARP4ENSG00000161813.16814.448701306.81850-0.6822013.7765012.43700HepG2DNAJC2
    LARP4ENSG00000161813.161348.43150991.106300.444102.767001.68510HepG2EIF3G
    LARP4ENSG00000161813.162461.737802889.88560-0.231302.634702.04500HepG2ETF1
    LARP4ENSG00000161813.161498.005801860.91720-0.313002.126701.51630HepG2FXR1
    LARP4ENSG00000161813.16922.439401733.75540-0.9104011.8371010.59290HepG2GPKOW
    LARP4ENSG00000161813.16927.855601331.25010-0.520803.922603.17280HepG2HNRNPA1
    LARP4ENSG00000161813.161572.614301835.82250-0.223302.077901.45030HepG2HNRNPF
    LARP4ENSG00000161813.161278.528401774.71650-0.473104.692103.83080HepG2HNRNPL
    LARP4ENSG00000161813.162109.470501654.549700.350302.782102.15100HepG2HNRNPLL
    LARP4ENSG00000161813.16857.053501179.44380-0.460602.364201.48410HepG2HNRNPM
    LARP4ENSG00000161813.161068.773201470.93180-0.460806.909505.98960HepG2HNRNPU
    LARP4ENSG00000161813.161137.599201502.51710-0.401405.281804.29430HepG2ILF2
    LARP4ENSG00000161813.161194.424301459.49100-0.289103.951202.73470HepG2KIF1C
    LARP4ENSG00000161813.161076.241701845.86510-0.778306.996905.03390HepG2KRR1
    LARP4ENSG00000161813.161029.112602313.78950-1.168904.744403.64790HepG2LARP4
    LARP4ENSG00000161813.162446.668701861.566700.394203.145502.44650HepG2MAGOH
    LARP4ENSG00000161813.163236.448501871.991500.789707.096506.12110HepG2MATR3
    LARP4ENSG00000161813.161524.584801931.72680-0.341502.552101.81980HepG2NOL12
    LARP4ENSG00000161813.162325.286001706.426600.446303.834502.99580HepG2PABPC4
    LARP4ENSG00000161813.161049.270701311.96280-0.322303.373502.56600HepG2PPIL4
    LARP4ENSG00000161813.161753.471601394.226400.330604.399003.44840HepG2PRPF4
    LARP4ENSG00000161813.161432.333501117.878900.357502.524501.75170HepG2PRPF8
    LARP4ENSG00000161813.162299.033001957.223900.232102.046801.52140HepG2PUM1
    LARP4ENSG00000161813.162244.944601806.702200.313203.605502.90610HepG2QKI
    LARP4ENSG00000161813.162378.507001240.338000.939207.429206.30590HepG2RAVER1
    LARP4ENSG00000161813.162780.686202415.420900.203102.045701.58210HepG2RBM22
    LARP4ENSG00000161813.162716.489001639.738100.7282013.8915012.44610HepG2RBM25
    LARP4ENSG00000161813.161843.506901384.134100.413403.959902.75890HepG2RBM27
    LARP4ENSG00000161813.161780.719901218.019300.547803.388102.34300HepG2RPS10
    LARP4ENSG00000161813.161740.519201276.612200.447104.493303.48740HepG2RPS2
    LARP4ENSG00000161813.161352.074701861.98270-0.461702.961402.13520HepG2RPS3A
    LARP4ENSG00000161813.161857.562901303.064500.511405.698604.14230HepG2RPS5
    LARP4ENSG00000161813.161555.497101105.875800.492104.401603.43510HepG2RRP9
    LARP4ENSG00000161813.162426.575401348.925600.847007.367404.96970HepG2RTF1
    LARP4ENSG00000161813.161369.92280848.524500.691006.368004.95690HepG2SERBP1
    LARP4ENSG00000161813.162686.064901813.193800.566904.012703.19490HepG2SF3A3
    LARP4ENSG00000161813.162185.574601637.709500.416204.065203.22450HepG2SF3B1
    LARP4ENSG00000161813.162166.582601736.824500.318904.613203.87930HepG2SF3B4
    LARP4ENSG00000161813.161114.798801527.68700-0.454606.436905.52110HepG2SMN1
    LARP4ENSG00000161813.161729.208101263.585700.452502.761201.80570HepG2SMNDC1
    LARP4ENSG00000161813.163782.812402728.149100.4714013.2822012.40230HepG2SRFBP1
    LARP4ENSG00000161813.163418.010901812.904900.9148038.1323036.82310HepG2SRSF1
    LARP4ENSG00000161813.161975.629601474.925700.421607.927207.07810HepG2SRSF9
    LARP4ENSG00000161813.162720.608802368.714300.199702.526402.03120HepG2SSB
    LARP4ENSG00000161813.161833.001601159.070200.661104.840103.24290HepG2SUB1
    LARP4ENSG00000161813.161795.722302070.43810-0.205401.846801.32010HepG2SUCLG1
    LARP4ENSG00000161813.161425.826001154.430900.304502.926401.96060HepG2SUPT6H
    LARP4ENSG00000161813.16937.988101612.52610-0.7817011.033809.72990HepG2TARDBP
    LARP4ENSG00000161813.16968.981001429.48030-0.561005.659504.99400HepG2TIAL1
    LARP4ENSG00000161813.16981.539801442.04930-0.555008.064207.18040HepG2TRIM56
    LARP4ENSG00000161813.162336.351801462.204300.676009.558408.37550HepG2U2AF1
    LARP4ENSG00000161813.162575.197101906.358100.433803.089502.20540HepG2UBE2L3
    LARP4ENSG00000161813.16749.850101320.86230-0.816802.352401.43370HepG2UPF2
    LARP4ENSG00000161813.161814.091001552.485000.224602.584902.00290HepG2UTP3
    LARP4ENSG00000161813.162221.493401219.335300.865308.167506.06840HepG2XRCC5
    LARP4ENSG00000161813.161936.841601363.846400.505903.218802.07190HepG2XRCC6
    LARP4ENSG00000161813.16820.409501419.42960-0.790903.196102.41900HepG2XRN2
    LARP4ENSG00000161813.162372.004101768.520100.4235010.302709.41560HepG2ZNF622
    LARP4ENSG00000161813.161944.374901238.841700.650205.334303.46990HepG2ZRANB2
    LARP4ENSG00000161813.162781.887002007.263800.470703.632402.26240K562AARS
    LARP4ENSG00000161813.164303.586505262.48610-0.290202.541701.37680K562ABCF1
    LARP4ENSG00000161813.162172.024503020.12020-0.4756010.799509.77200K562AGGF1
    LARP4ENSG00000161813.162474.657203318.49510-0.423304.949203.54130K562AKAP8
    LARP4ENSG00000161813.162537.379503142.53250-0.308602.871002.20550K562AKAP8L
    LARP4ENSG00000161813.162582.632203138.43740-0.281203.454501.95020K562BCCIP
    LARP4ENSG00000161813.162532.300503032.66220-0.260103.735902.61150K562BCLAF1
    LARP4ENSG00000161813.161042.945201313.26300-0.332502.281801.34130K562CCAR1
    LARP4ENSG00000161813.162868.533203609.33770-0.331404.130402.64990K562CCDC124
    LARP4ENSG00000161813.163280.971304298.99590-0.389903.094501.55470K562CKAP4
    LARP4ENSG00000161813.163539.843604329.09210-0.290403.511402.25810K562CPEB4
    LARP4ENSG00000161813.162356.535502938.98750-0.318703.440502.56340K562CPSF6
    LARP4ENSG00000161813.161855.630302300.72560-0.310203.644002.40710K562CSTF2
    LARP4ENSG00000161813.161563.197602291.77500-0.552008.238206.36080K562DDX3X
    LARP4ENSG00000161813.165870.550604480.201100.389808.622207.55280K562DDX47
    LARP4ENSG00000161813.161831.983002323.54230-0.342904.488202.69180K562DDX6
    LARP4ENSG00000161813.162133.089302658.72590-0.317802.412301.56140K562EFTUD2
    LARP4ENSG00000161813.161949.523302517.25520-0.368706.104704.28300K562EIF2S1
    LARP4ENSG00000161813.162627.520503751.42610-0.513703.818602.99460K562EIF2S2
    LARP4ENSG00000161813.161976.716901335.856400.565203.255902.15710K562EIF3A
    LARP4ENSG00000161813.161675.516102156.18950-0.363904.698003.12380K562EIF4B
    LARP4ENSG00000161813.161693.590102089.97940-0.303403.220301.80560K562EWSR1
    LARP4ENSG00000161813.162420.359903782.74310-0.6442010.020108.29640K562FIP1L1
    LARP4ENSG00000161813.162227.721602990.29650-0.424704.308503.24120K562FMR1
    LARP4ENSG00000161813.163611.288702489.984000.5363012.2997011.11750K562FXR1
    LARP4ENSG00000161813.163318.873302422.049500.454403.228002.45570K562G3BP2
    LARP4ENSG00000161813.161607.434802806.03200-0.8038015.1958013.30430K562GPKOW
    LARP4ENSG00000161813.163312.106704999.75260-0.594103.915403.01990K562GRSF1
    LARP4ENSG00000161813.161713.490003111.29900-0.8606012.4844010.14290K562HNRNPM
    LARP4ENSG00000161813.163547.231405128.68240-0.531907.298506.02320K562HSPD1
    LARP4ENSG00000161813.162187.806903284.22840-0.586105.672403.97980K562IGF2BP2
    LARP4ENSG00000161813.162615.846503340.97310-0.353003.292401.96070K562IGF2BP3
    LARP4ENSG00000161813.161357.894002395.94330-0.819208.685606.91580K562KRR1
    LARP4ENSG00000161813.161345.189203081.13290-1.195708.699805.08000K562LARP4
    LARP4ENSG00000161813.162632.085603192.44780-0.278502.826701.73750K562MAK16
    LARP4ENSG00000161813.161844.160302738.99100-0.570708.420106.83920K562METAP2
    LARP4ENSG00000161813.162608.319703106.08440-0.252003.833102.89490K562MTPAP
    LARP4ENSG00000161813.161761.790602390.90010-0.440506.020404.22520K562NCBP2
    LARP4ENSG00000161813.161817.136702619.07840-0.527405.270603.33580K562NONO
    LARP4ENSG00000161813.161508.594402162.78480-0.519704.133202.22810K562NUSAP1
    LARP4ENSG00000161813.161883.149002561.83770-0.444003.542101.47380K562PABPC4
    LARP4ENSG00000161813.162489.846703072.30610-0.303302.767601.78730K562PCBP2
    LARP4ENSG00000161813.161610.953602144.87600-0.413002.929301.45680K562PHF6
    LARP4ENSG00000161813.162646.935003442.80430-0.379303.087001.43240K562PKM
    LARP4ENSG00000161813.162606.365504294.07340-0.7203011.868909.81430K562PPIG
    LARP4ENSG00000161813.161185.783801969.93360-0.732305.371504.05670K562PSIP1
    LARP4ENSG00000161813.167665.110106300.118200.282802.926002.08710K562PUF60
    LARP4ENSG00000161813.165430.593906565.85420-0.273903.076302.06690K562PUM2
    LARP4ENSG00000161813.162628.234003217.17700-0.291702.450901.66320K562RBM22
    LARP4ENSG00000161813.162774.905902152.864500.366103.917502.61810K562SAFB
    LARP4ENSG00000161813.162834.600402225.741100.348803.124601.58430K562SDAD1
    LARP4ENSG00000161813.161248.048701703.36560-0.448703.600102.38500K562SRFBP1
    LARP4ENSG00000161813.162274.363703105.30340-0.449304.006602.70270K562SRSF5
    LARP4ENSG00000161813.162104.663002655.68510-0.335505.046103.22870K562SSB
    LARP4ENSG00000161813.161605.698202505.34270-0.641806.907805.25290K562SUPV3L1
    LARP4ENSG00000161813.163286.623102423.370600.439503.386702.48010K562SYNCRIP
    LARP4ENSG00000161813.162575.743103328.33270-0.369802.527801.84950K562TARDBP
    LARP4ENSG00000161813.162395.639203210.47920-0.422405.664104.42570K562TIA1
    LARP4ENSG00000161813.161450.983501894.80920-0.385002.619901.71090K562TIAL1
    LARP4ENSG00000161813.162256.240303149.77210-0.481305.786004.07290K562TRA2A
    LARP4ENSG00000161813.161552.860202012.41430-0.374002.865701.90000K562TRIM56
    LARP4ENSG00000161813.163269.334103811.37380-0.221303.065201.72510K562TROVE2
    LARP4ENSG00000161813.161978.424002651.42890-0.422403.807402.59490K562UCHL5
    LARP4ENSG00000161813.162427.727603659.49860-0.5920013.3618011.92480K562UPF1
    LARP4ENSG00000161813.162552.476103335.04750-0.385804.642402.47370K562UPF2
    LARP4ENSG00000161813.162619.605803131.34150-0.257402.372301.55980K562WDR3
    LARP4ENSG00000161813.163680.534003256.066200.176702.285301.50940K562WDR43
    LARP4ENSG00000161813.161936.868402699.63120-0.479004.706102.97000K562XRN2
    LARP4ENSG00000161813.164142.587105647.46020-0.447104.885403.68810K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    1,301 alternative splicing events after Knockdown/Knockout LARP4 protein :

    Only display 100 entries as example. Please click "View All" button to see all 1,301 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEMTMR3ENSG00000100330.11chr22+3040800630408127304050063040511830408356304085520.259000.000030.01260includedK562LARP4
    SEEHMT1ENSG00000181090.13chr9+1406467821406468601406383531406385421406486221406487430.157000.000270.04762includedK562LARP4
    SEPOLA1ENSG00000101868.6chrX+2487344324873598248616622486179424906122249062390.096000.000070.02088includedK562LARP4
    SETBC1D17ENSG00000104946.6chr19+5038257950382761503817545038182950383535503836590.059000.000730.08562includedK562LARP4
    SESLC30A5ENSG00000145740.14chr5+6842383068423959684190256841925268425273684268960.060000.000000.00087includedK562LARP4
    SERABEPKENSG00000136933.12chr9+1279756481279758011279698421279700001279828171279829790.128000.000870.09429includedK562LARP4
    SENUP85ENSG00000125450.6chr17+7322426073224479732222027322225273225092732252210.668000.000280.04923includedK562LARP4
    SEZDHHC7ENSG00000153786.8chr16-8502214985022260850154758501560085022368850224790.074000.000140.03279includedK562LARP4
    SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.075000.000000.00028includedK562LARP4
    SEDPM1ENSG00000000419.8chr20-4955766549557746495574014955747049558567495586630.090000.000000.00183includedK562LARP4
    SEPFDN5ENSG00000123349.9chr12+5368962253689725536893255368942353691633536917080.080000.000010.00664includedK562LARP4
    SEZNF207ENSG00000010244.12chr17+3069368330693776306924673069250630694790306949620.168000.000650.08046includedK562LARP4
    SECCNCENSG00000112237.8chr6-9999205499992149999903779999148599992987999931060.158000.000000.00002includedK562LARP4
    SEXPAENSG00000136936.6chr9-1004444811004447121004371901004378691004472041004473220.098000.000020.00765includedK562LARP4
    SECIZ1ENSG00000148337.15chr9-1309501411309502131309429991309430781309526071309527230.126000.000400.06260includedK562LARP4
    SEPTK2BENSG00000120899.13chr8+2730331027303436273017222730178827308265273084120.086000.000100.02539includedK562LARP4
    SEPSMD6ENSG00000163636.6chr3-6400831864008477640079936400819964009067640091340.159000.000480.06733includedK562LARP4
    SESTYXL1ENSG00000127952.12chr7-7563020775630320756257267562591775633075756331730.139000.000830.09211includedK562LARP4
    SESREK1ENSG00000153914.11chr5+6545189265454760654492906544942465455046654551620.116000.000760.08700includedK562LARP4
    SECBLBENSG00000114423.14chr3-1054003221054004541053972741053974151054005671054006620.129000.000810.09094includedK562LARP4
    SEEXO1ENSG00000174371.12chr1+2420124132420125072420120322420123292420137102420138880.155000.000160.03436includedK562LARP4
    SECHTF18ENSG00000127586.12chr16+8400068400818395468397158401768402690.330000.000200.03934includedK562LARP4
    SEPICALMENSG00000073921.13chr11-8573445885734584857334208573351285742510857426530.224000.000830.09211includedK562LARP4
    SESMC6ENSG00000163029.11chr2-1793424417934331179270931792721817934892179350400.161000.000000.00002includedK562LARP4
    SETOP3BENSG00000100038.15chr22-2233035222330559223300112233017922337126223371840.066000.000060.01902includedK562LARP4
    SELCORLENSG00000178177.10chr4-1796459217964672179635251796365517974442179745080.063000.000680.08086includedK562LARP4
    SEAHSA2ENSG00000173209.18chr2+6141068161410797614084726140854061411846614119350.135000.000630.07888includedK562LARP4
    SEARNTENSG00000143437.16chr1-1507903951507905061507898361507899091507956691507958210.139000.000500.06960includedK562LARP4
    SESCAPERENSG00000140386.8chr15-7715014977150220771340747713427277154756771548740.192000.000470.06733includedK562LARP4
    SETMBIM4ENSG00000155957.12chr12-6656269466563133665471196654722866563634665637600.108000.000060.01902includedK562LARP4
    SESDHAP1ENSG00000185485.10chr3-1956950891956952561956947491956948611956981931956983150.154000.000050.01719includedK562LARP4
    SEUSP45ENSG00000123552.13chr6-9992764199927778999240189992410699930628999307590.204000.000440.06531includedK562LARP4
    SENSFL1CENSG00000088833.13chr20-1426639142679414263101426475143313714332750.088000.000400.06202includedK562LARP4
    SEGPATCH4ENSG00000160818.12chr1-1565675911565677301565661781565662701565678261565679160.059000.000350.05702includedK562LARP4
    SESRSF6ENSG00000124193.10chr20+4208779242088060420870004208714942088410420885350.354000.000000.00027includedK562LARP4
    SEMPGENSG00000103152.7chr16+1291371293301282551283321294231296990.089000.000020.00987includedK562LARP4
    SECBSENSG00000160200.13chr21-4448788744488070444866344448672244488618444887250.515000.000250.04537includedK562LARP4
    SEINTS8ENSG00000164941.9chr8+9588677995886830958856019588570595888301958883750.089000.000190.03801includedK562LARP4
    SESLC25A12ENSG00000115840.9chr2-1727046821727047861727008781727010181727123431727124590.055000.000080.02263includedK562LARP4
    SEHNRNPDENSG00000138668.14chr4-8327604783276154832749868327530783276456832765540.084000.000000.00004includedK562LARP4
    SECOX20ENSG00000203667.5chr1+2450052452450053602449989602449990582450054962450055600.124000.000390.06168includedK562LARP4
    SERBBP8ENSG00000101773.12chr18+2053729320537359205295802052967620548768205488810.052000.000020.00741includedK562LARP4
    SEWDSUB1ENSG00000196151.6chr2-1601048821601050231600923081600927011601127061601128860.121000.000090.02380includedK562LARP4
    SER3HDM1ENSG00000048991.12chr2+1363991051363993601363964651363966921364029481364030970.105000.000660.08046includedK562LARP4
    SENASPENSG00000132780.12chr1+4607299246074009460721534607226346078840460789200.139000.000000.00041includedK562LARP4
    SEHMCESENSG00000183624.9chr3+1290095211290096471290076961290078401290171961290173780.105000.000560.07373includedK562LARP4
    SEFAM204AENSG00000165669.9chr10-1201012381201014391200957441200959351201017811201018320.195000.000750.08688includedK562LARP4
    SEDUSP13ENSG00000079393.16chr10-7686162476861719768574697685764376868766768689430.349000.000940.09824includedK562LARP4
    SETCP11L1ENSG00000176148.11chr11+3307813333078269330761383307627133078660330787810.193000.000660.08046includedK562LARP4
    SECD33ENSG00000105383.10chr19+5172847351728854517283535172841151729058517293370.264000.000000.00160includedK562LARP4
    SELUZP1ENSG00000169641.9chr1-2343607723436143234355142343562023495258234953380.227000.000680.08086includedK562LARP4
    SERNPS1ENSG00000205937.7chr16-2314573231476123141762314332231805523184130.229000.000120.02988includedK562LARP4
    SEATP6V0A1ENSG00000033627.10chr17+4066878940668923406663064066647840673044406734620.060000.000030.01115includedK562LARP4
    SENTAN1ENSG00000157045.4chr16-1514185315141956151417111514177715149747151499210.151000.000090.02370includedK562LARP4
    SETFDP1ENSG00000198176.8chr13+1142774941142776011142653101142653771142874341142876000.108000.000650.08046includedK562LARP4
    SEHNRNPDLENSG00000152795.13chr4-8334671583346820833457818334603683347189833472740.161000.000000.00001includedK562LARP4
    SENAPAENSG00000105402.3chr19-4800667948006759479988064799885348018099480182960.061000.000070.02103includedK562LARP4
    SEUPF3AENSG00000169062.10chr13+1150517761150518751150483801150484181150519931150521040.145000.000550.07331includedK562LARP4
    SEZNF280AENSG00000169548.3chr22-2287103822871239228680592287002522874431228746130.094000.000000.00044includedK562LARP4
    SECLK3ENSG00000179335.14chr15+7491446074914557749123497491256674914834749149010.104000.000310.05273includedK562LARP4
    SEFDPSENSG00000160752.10chr1+1552795791552797561552787061552788671552798331552799960.093000.000040.01475includedK562LARP4
    SEYPEL5ENSG00000119801.8chr2+3037111030371407303698283036992830379493303796580.170000.000010.00489includedK562LARP4
    SEC2orf68ENSG00000168887.6chr2-8583851485838696858365578583670985838790858388640.124000.000040.01370includedK562LARP4
    SEAFMIDENSG00000183077.11chr17+7619878376198832761870507618714176202991762033210.571000.000230.04386includedK562LARP4
    SESNHG1ENSG00000255717.2chr11-6262235962622410626219906262202362622604626227080.057000.000540.07292includedK562LARP4
    SESMEK2ENSG00000138041.11chr2-5582555155826175558160145581609255831113558312120.094000.000320.05339includedK562LARP4
    SEDNAJC7ENSG00000168259.10chr17-4015537640155575401524994015258840170455401705360.258000.000120.02902includedK562LARP4
    SEG2E3ENSG00000092140.10chr14+3105028131050322310283653102847831055923310560210.061000.000490.06837includedK562LARP4
    SEG2E3ENSG00000092140.10chr14+3105973731059870310585753105869031061528310616530.290000.000000.00092includedK562LARP4
    SENCAM2ENSG00000154654.10chr21+2258285922583010225194372251956922652897226529720.178000.000110.02700includedK562LARP4
    SEHERC2ENSG00000128731.11chr15-2854366228543775285380332853816828544547285446620.058000.000430.06531includedK562LARP4
    SEFANCAENSG00000187741.10chr16-8984474889844870898421498984222389845208898452580.051000.000660.08046includedK562LARP4
    SECARSENSG00000110619.12chr11-3068982306923130633943063486307857230786480.119000.000160.03451includedK562LARP4
    SEFBXO38ENSG00000145868.12chr5+1478067751478075101478050841478052641478129861478130870.182000.000760.08691includedK562LARP4
    SEDZIP3ENSG00000198919.8chr3+1083630101083636281083612841083613611083654631083654960.347000.000770.08768includedK562LARP4
    SEKLHL20ENSG00000076321.6chr1+1736846611736847931736840791736842171736851411736852050.460000.000710.08394includedK562LARP4
    SEMED15ENSG00000099917.13chr22+2092939920929519209228072092291820936897209370340.132000.000180.03722includedK562LARP4
    SEEML2ENSG00000125746.10chr19-4611971846119816461190594611914746120022461201110.093000.000300.05207includedK562LARP4
    SEABI1ENSG00000136754.12chr10-2706000327060018270591732705927427065993270661700.121000.000610.07773includedK562LARP4
    SEABI1ENSG00000136754.12chr10-2704799027048167270405262704071227054146270542470.168000.000200.03934includedK562LARP4
    SEPI4KBENSG00000143393.12chr1-1512986471512988491512880481512889851512997461513001330.194000.000000.00113includedK562LARP4
    SECCDC18ENSG00000122483.13chr1+9367765793677818936763589367648393680302936805230.071000.000820.09125includedK562LARP4
    SEKLC2ENSG00000174996.7chr11+6603096666031039660303886603050766031130660312180.084000.000580.07531includedK562LARP4
    SEAACSENSG00000081760.12chr12+1255626411255629161255610361255611571255708751255709890.059000.000600.07656includedK562LARP4
    SESH3GL3ENSG00000140600.12chr15+8427802184278218842574138425752384286833842873940.069000.000140.03275includedK562LARP4
    SEGGA1ENSG00000100083.14chr22+3800903038009198380049663800516138010196380102810.431000.000900.09640includedK562LARP4
    SEHDLBPENSG00000115677.12chr2-2422082432422083682422078912422079562422545162422546180.184000.000360.05811includedK562LARP4
    SEVAPAENSG00000101558.9chr18+9944920994505599369829937063995039199505650.056000.000000.00002includedK562LARP4
    SEC15orf57ENSG00000128891.11chr15-4084579340846326408235294082450140849414408495710.087000.000040.01451includedK562LARP4
    SEGPALPP1ENSG00000133114.13chr13+4558310645583135455829294558301445589086455892180.063000.000010.00582includedK562LARP4
    SEPIP5K1CENSG00000186111.4chr19-3661370366152436609633661081366186836619990.124000.000500.06939includedK562LARP4
    SEMCM3ENSG00000112118.13chr6-5213003252130183521294185212958452130872521309420.143000.000100.02543includedK562LARP4
    SERPL17ENSG00000265681.2chr18-4701810547018203470179014701795447018644470187690.072000.000000.00024includedK562LARP4
    SEPOLEENSG00000177084.12chr12-1332018371332020051332014901332015801332022301332023560.098000.000030.01096includedK562LARP4
    SEHEMK1ENSG00000114735.5chr3+5061696650617171506162515061635750617274506173700.179000.000570.07468includedK562LARP4
    SEMAGOHBENSG00000111196.5chr12-1076169610761982107604521076053510762429107625400.158000.000000.00030includedK562LARP4
    SEMAGOHBENSG00000111196.5chr12-1076541310765577107632201076327910766037107661720.105000.000060.01902includedK562LARP4
    SEENOSF1ENSG00000132199.14chr18-6972396973556942476943347064697065780.184000.000270.04855includedK562LARP4
    SENCOA3ENSG00000124151.14chr20+4625265446252827462509724625107446254124462542250.080000.000000.00059includedK562LARP4
    SEMAPK8ENSG00000107643.11chr10+4951614549516331495147224951486449609654496098250.475000.000000.00006includedK562LARP4





    19 RBPs can affect the splicing of LARP4 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SELARP4ENSG00000161813.16chr12+5080618750806236507947385079481150821544508216920.195000.000010.00042includedK562SRSF1
    SELARP4ENSG00000161813.16chr12+508061875080623650794738507948115082154450821692-0.091000.003960.08791excludedK562AKAP8L
    SELARP4ENSG00000161813.16chr12+508061875080623650794738507948115082152750821692-0.301000.001640.01853excludedK562AQR
    SELARP4ENSG00000161813.16chr12+508061875080623650794738507948115082154450821692-0.084000.001270.02079excludedK562PUS1
    SELARP4ENSG00000161813.16chr12+508549175085513050848096508482005085636450856413-0.070000.002410.09597excludedK562EFTUD2
    SELARP4ENSG00000161813.16chr12+508472425084745550835372508354265084809650848200-0.158000.000390.01040excludedK562U2AF1
    SELARP4ENSG00000161813.16chr12+5080618750806236507947385079481150821544508216920.158000.000240.04552includedK562EIF4G2
    SELARP4ENSG00000161813.16chr12+508549175085513050848096508482005085636450856413-0.174000.000000.00011excludedK562UTP18
    SELARP4ENSG00000161813.16chr12+508472425084745550835372508354265084809650848200-0.100000.002180.06806excludedK562HNRNPU
    SELARP4ENSG00000161813.16chr12+508315175083162150829270508294075083422150834332-0.057000.002850.08867excludedK562SF3B1
    SELARP4ENSG00000161813.16chr12+5080618750806236507947385079481150821544508216920.324000.000550.06628includedHepG2KHSRP
    SELARP4ENSG00000161813.16chr12+5080618750806236507947385079481150821544508216920.228000.000000.00014includedK562HNRNPC
    A3SSLARP4ENSG00000161813.16chr12+5082269950822873508227175082287350821544508216920.070000.001270.08480longerHepG2SF3A3
    A3SSLARP4ENSG00000161813.16chr12+5082269950822873508227175082287350821544508216920.227000.000000.00000longerK562AQR
    A3SSLARP4ENSG00000161813.16chr12+5082152750821692508215445082169250794639507948110.098000.000010.00010longerK562AQR
    MXELARP4ENSG00000161813.16chr12+50848096508482005085491750855130508353725083542650856364508564130.134000.000920.030181includedK562RBM15
    MXELARP4ENSG00000161813.16chr12+50848096508482005085491750855130508353725083542650856364508564130.229000.000910.018911includedK562PUS1
    MXELARP4ENSG00000161813.16chr12+50835349508354265084724250847455508342215083433250848096508482000.092000.001800.015181includedK562AQR
    MXELARP4ENSG00000161813.16chr12+50856364508564135086719750867319508480965084820050867781508679500.086000.009100.058661includedK562AQR
    MXELARP4ENSG00000161813.16chr12+50856364508564135086074150860903508480965084820050867197508673190.096000.001150.010291includedK562AQR
    MXELARP4ENSG00000161813.16chr12+50860741508609035086719750867319508549175085513050867781508679500.058000.015360.089211includedK562AQR
    MXELARP4ENSG00000161813.16chr12+50822699508228735082427750824353508215445082169250829270508294070.230000.000000.000001includedK562AQR
    MXELARP4ENSG00000161813.16chr12+50821527508216925082269950822873507946395079481150824277508243530.105000.000000.000021includedK562AQR
    MXELARP4ENSG00000161813.16chr12+50848096508482005085491750855130508353725083542650856364508564130.255000.000000.000051includedK562UTP18
    MXELARP4ENSG00000161813.16chr12+5086074150860903508671975086731950856364508564135086778150867950-0.331000.001180.037122includedHepG2XRN2
    MXELARP4ENSG00000161813.16chr12+5086074150860903508671975086731950856364508564135086778150867950-0.310000.000190.006752includedHepG2DDX55
    MXELARP4ENSG00000161813.16chr12+5086719750867319508677815086795050860741508609035086930850871280-0.167000.002700.055102includedHepG2DDX55
    MXELARP4ENSG00000161813.16chr12+5084809650848200508549175085513050835372508354265085636450856413-0.393000.000470.059492includedHepG2CDC40
    MXELARP4ENSG00000161813.16chr12+50867197508673195086778150867950508607415086090350869308508712800.113000.000350.085061includedK562APOBEC3C
    MXELARP4ENSG00000161813.16chr12+50835372508354265084724250847455508342215083433250848096508482000.166000.000200.009871includedK562DHX30

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein LARP4 and its RNA.