NDUFS3

General Information

Gene Name       : NDUFS3
Gene ID             : ENSG00000213619.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NDUFS3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDUFS3ENSG00000213619.962.8975.5969.24ENCSR000AEF
HepG2NDUFS3ENSG00000213619.9110.92122.31116.62ENCSR985KAT
K562NDUFS3ENSG00000213619.9142.04130.20136.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDUFS3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDUFS3 RNA is bound by 22 proteins.  







eCLIP assay for NDUFS3 is not avaliable on ENCORE database.





22 proteins are bound to NDUFS3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr114760594147606072+3'-UTR,CDS3.6320613.98818K562RPS3
chr114760092247601028+3'-UTR,CDS,intron-Distal,intron-Proximal4.373078.54286K562PRPF8
chr114760604347606115+3'-UTR5.2686781.61955K562PUM2
chr114760248947602537+3'-UTR,CDS,intron-Proximal3.884183.36483HepG2G3BP1
chr114760233347602418+3'-UTR,CDS,intron-Proximal3.154085.96307K562BUD13
chr114760593747606052+3'-UTR,CDS3.887277.16338HepG2LARP4
chr114760604047606103+3'-UTR4.064153.27240K562APOBEC3C
chr114760234647602410+3'-UTR,CDS,intron-Proximal3.334664.64824K562PRPF8
chr114760060947600679+5'-UTR,CDS,intron-Distal3.826437.11978K562DDX3X
chr114760063847600682+5'-UTR,CDS,intron-Distal5.226673.73688K562GEMIN5
chr114760586847605925+CDS3.661873.81620HepG2LARP4
chr114760587047605931+CDS4.330038.38377K562LIN28B
chr114760586647605925+CDS4.047514.37331K562GRWD1
chr114760067947600711+CDS,intron-Distal,intron-Proximal4.323467.22925K562DDX3X
chr114760586547605934+CDS,intron-Proximal3.364276.33786K562PABPC4
chr114760586547605926+CDS,intron-Proximal4.4725110.86155HepG2SUB1
chr114760594447606031+CDS4.974477.92186HepG2G3BP1
chr114760078847600915+CDS,intron-Distal,intron-Proximal4.2739915.19374HepG2PRPF8
chr114760400947604059+CDS,intron-Proximal3.085914.07440K562PRPF8
chr114760219847602272+CDS,intron-Distal,intron-Proximal4.954493.37579K562EFTUD2
chr114760219747602266+CDS,intron-Distal,intron-Proximal4.704035.35117HepG2PRPF8
chr114760214547602259+CDS,intron-Distal,intron-Proximal4.3354715.96242K562PRPF8
chr114760391147604008+CDS3.758065.97760HepG2G3BP1
chr114760587147605927+CDS3.490173.20659K562SND1
chr114760219547602267+CDS,intron-Distal,intron-Proximal3.621075.37381K562TIA1
chr114760593347605939+CDS3.190539.81338K562YBX3
chr114760587047605944+CDS4.079207.49320HepG2G3BP1
chr114760068847600757+CDS,intron-Distal,intron-Proximal3.831584.54206HepG2PRPF8
chr114760152347601544+intron-Distal3.339123.84589K562HNRNPL
chr114759144147591491+3'-UTR,CDS,intron-Distal,intron-Proximal3.992114.98250K562AQR
chr114759118747591301+CDS,intron-Distal,intron-Proximal4.312117.15298K562AQR
chr114760126247601385+intron-Distal4.0044010.81885K562HNRNPL
chr114760145347601501+intron-Distal3.370183.61010K562AGGF1
chr114760151847601583+intron-Distal3.514303.51804HepG2HNRNPL
chr114760161447601706+intron-Distal3.278504.00486HepG2HNRNPL
chr114760161447601688+intron-Distal4.240779.13598K562HNRNPL
chr114759125047591428+3'-UTR,CDS,intron-Distal,intron-Proximal3.098564.48159HepG2LARP4
chr114760522747605385+intron-Distal3.837184.65362K562RBFOX2
chr114758737647587392+CDS,intron-Proximal5.169914.57565HepG2DDX3X
chr114760385647603900+intron-Proximal3.951964.69223K562SF3B4
chr114758723347587365+CDS,intron-Proximal5.6166042.55685HepG2DDX3X
chr114758752647587592+CDS,intron-Proximal5.9552811.46503HepG2PRPF8
chr114758753747587584+CDS,intron-Proximal4.6751712.86643K562AQR
chr114759327247593341+3'-UTR,intron-Proximal4.2685212.73651K562PABPC4
chr114758745647587489+CDS,intron-Proximal3.937633.86664K562DDX3X
chr114759332047593388+3'-UTR,intron-Proximal4.088453.43895HepG2LARP4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDUFS3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDUFS3 is not available on ENCORE database.

  • 70 RBPs can affect the levels of NDUFS3.  








The Knockdown/knockout RNA-Seq assay for NDUFS3 is not available on ENCORE database.





70 RBPs can affect the gene expression of NDUFS3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDUFS3ENSG00000213619.51844.550301373.988600.424802.952002.40470HepG2AKAP1
NDUFS3ENSG00000213619.5396.04760557.66490-0.493703.525501.95260HepG2ATP5C1
NDUFS3ENSG00000213619.5944.71540653.198300.532302.696501.94230HepG2CNOT7
NDUFS3ENSG00000213619.5215.32920298.79450-0.472602.183901.56360HepG2CPSF6
NDUFS3ENSG00000213619.52031.707701316.222000.626206.730705.79610HepG2DDX3X
NDUFS3ENSG00000213619.5793.358601086.93600-0.454203.215402.57860HepG2EIF2S1
NDUFS3ENSG00000213619.5867.686401169.48170-0.430602.286001.65780HepG2EIF4B
NDUFS3ENSG00000213619.51169.466401632.48700-0.481208.586107.62760HepG2ETF1
NDUFS3ENSG00000213619.5169.55460299.32130-0.819902.204101.30570HepG2FTO
NDUFS3ENSG00000213619.5639.17600803.77100-0.330602.196601.48860HepG2FUBP3
NDUFS3ENSG00000213619.5933.401501193.42950-0.354502.341501.52620HepG2G3BP2
NDUFS3ENSG00000213619.5581.86370728.36580-0.324002.661101.95660HepG2HNRNPF
NDUFS3ENSG00000213619.5859.839601142.80370-0.410402.866802.18160HepG2IGF2BP2
NDUFS3ENSG00000213619.5519.65520643.19960-0.307702.669901.94990HepG2ILF2
NDUFS3ENSG00000213619.5926.631001212.27260-0.387602.576301.94200HepG2MAGOH
NDUFS3ENSG00000213619.51068.130701320.31990-0.305802.772102.00710HepG2NOL12
NDUFS3ENSG00000213619.5724.121701111.35730-0.618005.526604.51810HepG2PABPC4
NDUFS3ENSG00000213619.5819.174101152.56860-0.492606.778105.99690HepG2PTBP1
NDUFS3ENSG00000213619.51039.287901260.37830-0.278301.939501.42770HepG2PUF60
NDUFS3ENSG00000213619.51033.930701336.97760-0.370802.174501.57690HepG2PUM2
NDUFS3ENSG00000213619.5848.199801248.25200-0.557407.493706.54090HepG2QKI
NDUFS3ENSG00000213619.5468.24130658.62980-0.492204.330103.28640HepG2RBM15
NDUFS3ENSG00000213619.51142.954101364.44060-0.255502.227101.74850HepG2RBM22
NDUFS3ENSG00000213619.5726.023801132.87210-0.641908.072206.97260HepG2RBM25
NDUFS3ENSG00000213619.51012.912101282.69500-0.340703.817803.20190HepG2NELFE
NDUFS3ENSG00000213619.5905.851801194.66190-0.399304.936804.14400HepG2RECQL
NDUFS3ENSG00000213619.5904.59190592.929900.609303.376202.62970HepG2SF3A3
NDUFS3ENSG00000213619.5930.423901199.96580-0.367004.271703.56140HepG2SF3B4
NDUFS3ENSG00000213619.51039.600701208.54810-0.217202.026601.40840HepG2SLBP
NDUFS3ENSG00000213619.51348.854401541.05640-0.192201.998101.55140HepG2SRFBP1
NDUFS3ENSG00000213619.5620.751501018.98380-0.7150013.5348012.47870HepG2SRSF9
NDUFS3ENSG00000213619.5880.016801415.27800-0.6855016.0278014.72950HepG2SUCLG1
NDUFS3ENSG00000213619.5539.20900837.94590-0.636005.089104.21670HepG2SUPV3L1
NDUFS3ENSG00000213619.5748.007501125.81020-0.589808.560707.66390HepG2TAF15
NDUFS3ENSG00000213619.5772.825001034.45790-0.420703.910102.92490HepG2TIA1
NDUFS3ENSG00000213619.5649.09890507.677700.354402.719002.12590HepG2UTP3
NDUFS3ENSG00000213619.51980.023001182.224400.7439020.0614018.64870K562AGGF1
NDUFS3ENSG00000213619.51619.209201299.126400.317602.298301.41440K562AKAP8
NDUFS3ENSG00000213619.52176.186301230.168000.8228014.7409013.03210K562AKAP8L
NDUFS3ENSG00000213619.53733.450303014.269500.308602.971802.36680K562AQR
NDUFS3ENSG00000213619.5424.83950606.28980-0.513103.859102.56960K562CCAR1
NDUFS3ENSG00000213619.5510.72240678.71060-0.410302.608901.32320K562DHX30
NDUFS3ENSG00000213619.51603.146501323.686400.276203.071902.14210K562DKC1
NDUFS3ENSG00000213619.51501.605202039.21470-0.441507.056705.98500K562EIF2S2
NDUFS3ENSG00000213619.5421.46810616.71370-0.549202.477401.52940K562EIF3A
NDUFS3ENSG00000213619.51435.73360959.959200.580604.816103.67450K562FIP1L1
NDUFS3ENSG00000213619.5811.513701086.27150-0.420702.433301.77680K562G3BP2
NDUFS3ENSG00000213619.51125.241301472.41240-0.387902.831501.39320K562GEMIN5
NDUFS3ENSG00000213619.5512.168101044.17450-1.0277017.0817015.67800K562HNRNPC
NDUFS3ENSG00000213619.51188.11390789.701900.589204.539303.32440K562HNRNPM
NDUFS3ENSG00000213619.51870.664802208.92710-0.239802.371001.54340K562HNRNPU
NDUFS3ENSG00000213619.5444.33830612.20080-0.462303.011701.46210K562KHDRBS1
NDUFS3ENSG00000213619.51794.838301305.480800.459205.282204.06600K562KIF1C
NDUFS3ENSG00000213619.5311.15930478.16990-0.619902.821901.87800K562KRR1
NDUFS3ENSG00000213619.51585.731101249.694700.343502.789701.70890K562MAK16
NDUFS3ENSG00000213619.51758.662101462.473100.266002.376501.54320K562MBNL1
NDUFS3ENSG00000213619.51700.122101025.090800.729806.744605.14530K562NAA15
NDUFS3ENSG00000213619.51622.24800904.791400.842204.534203.18220K562PABPN1
NDUFS3ENSG00000213619.5841.989101186.44660-0.494803.912802.92330K562PCBP3
NDUFS3ENSG00000213619.5721.51360910.04500-0.334902.604101.83050K562POLR2G
NDUFS3ENSG00000213619.51859.242801089.919200.770406.193004.88370K562PPIG
NDUFS3ENSG00000213619.52360.218401219.917900.9520017.4673016.14460K562PUS1
NDUFS3ENSG00000213619.51668.743701188.685200.489307.014806.09900K562RBM15
NDUFS3ENSG00000213619.5686.87210854.38500-0.314802.330001.42460K562RCC2
NDUFS3ENSG00000213619.51241.195501591.86310-0.359002.730601.64560K562NELFE
NDUFS3ENSG00000213619.5987.028701455.77310-0.560604.757103.68380K562RPS19
NDUFS3ENSG00000213619.5602.57650809.91560-0.426603.067701.97440K562SRFBP1
NDUFS3ENSG00000213619.51060.490301427.09650-0.428403.697701.77180K562SRP68
NDUFS3ENSG00000213619.5764.954401035.85120-0.437404.487802.53170K562SRSF9
NDUFS3ENSG00000213619.5888.836301383.75900-0.638606.077604.52720K562SUPV3L1
NDUFS3ENSG00000213619.5608.34070956.85740-0.653407.092405.42230K562TRIM56
NDUFS3ENSG00000213619.5910.804101464.52670-0.685207.912006.11690K562UCHL5
NDUFS3ENSG00000213619.51087.460701484.26560-0.448804.568903.66980K562UPF1
NDUFS3ENSG00000213619.51825.800301236.941700.561702.616701.37240K562UTP18
NDUFS3ENSG00000213619.51059.567401491.27890-0.493104.451902.78290K562XRN2
NDUFS3ENSG00000213619.52782.344503395.79760-0.287402.576501.74960K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDUFS3 is not available on ENCORE database.





13 RBPs can affect the splicing of NDUFS3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSNDUFS3ENSG00000213619.5chr11+4760082047600890476008204760088647602076476021740.065000.000000.00000longerK562AQR
RINDUFS3ENSG00000213619.5chr11+4760207647602536476020764760217447602386476025360.074000.000040.00045includedK562PUS1
RINDUFS3ENSG00000213619.5chr11+4760207647602536476020764760217447602386476025360.092000.000130.00256includedHepG2SF3A3
RINDUFS3ENSG00000213619.5chr11+4760207647602536476020764760217447602386476025360.081000.001280.03118includedK562HNRNPC
RINDUFS3ENSG00000213619.5chr11+4760207647602536476020764760217447602386476025360.089000.003950.02807includedHepG2U2AF2
RINDUFS3ENSG00000213619.5chr11+4760207647602536476020764760217447602386476025360.066000.000650.04766includedK562PHF6
RINDUFS3ENSG00000213619.5chr11+4760207647602536476020764760217447602386476025360.144000.000060.00323includedHepG2FTO
RINDUFS3ENSG00000213619.5chr11+4760207647602536476020764760217447602386476025360.060000.000000.00006includedHepG2TAF15
RINDUFS3ENSG00000213619.5chr11+4760207647602536476020764760217447602386476025360.054000.000950.05947includedK562WDR3
RINDUFS3ENSG00000213619.5chr11+4760207647602536476020764760217447602386476025360.053000.003140.05202includedK562U2AF1
RINDUFS3ENSG00000213619.5chr11+4760207647602536476020764760217447602386476025360.081000.000030.00071includedK562U2AF2
RINDUFS3ENSG00000213619.5chr11+476020764760253647602076476021744760238647602536-0.096000.001280.07726excludedK562FXR2
RINDUFS3ENSG00000213619.5chr11+4760207647602536476020764760217447602386476025360.287000.000000.00000includedK562AQR
RINDUFS3ENSG00000213619.5chr11+476020764760250647602076476021744760234947602506-0.124000.008540.04679excludedK562AQR
MXENDUFS3ENSG00000213619.5chr11+47587457475875384759125147591443475868874758734847593022475932950.152000.001120.045731includedK562FXR1
MXENDUFS3ENSG00000213619.5chr11+4760363947603765476039004760402047602386476025364760586547606114-0.121000.000030.000432includedK562AQR
MXENDUFS3ENSG00000213619.5chr11+47587457475875384759125147591443475868874758734847593022475932950.136000.001110.082781includedHepG2SSB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDUFS3 is not avaliable on ENCORE database.