WDR3

General Information

Gene Name       : WDR3
Gene ID             : ENSG00000065183.15
Essential Gene : Yes

Functions

Localization(RBPImage: WDR3)

Domains (AlphaFold: WDR3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878WDR3ENSG00000065183.1539.6340.5940.11ENCSR000AEF
HepG2WDR3ENSG00000065183.1542.0642.2442.15ENCSR985KAT
K562WDR3ENSG00000065183.1564.2973.7169.00ENCSR000AEO

Assays

3 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 685ENCSR202HKNWDR3K562ReleasedENCAB768ADRENCSR033FWT  
knockdown followed by RNA-seq WDR3-BGKLV34-K562ENCSR334BTAWDR3K562ReleasedENCSR174OYC   shRNAKD% = 94.4,95.1
knockdown followed by RNA-seq WDR3-BGHLV37-HepG2ENCSR902VPOWDR3HepG2ReleasedENCSR225PRV   shRNAKD% = 81.7,79.5






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
WDR3685K562ENCSR202HKNENCSR033FWTENCAB768ADRA301-553A1ReleasedENCODE4


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
WDR3ENCAB768ADRA301-553A1Released, ENCODE3BGHLV37-75, Released, ENCODE3BGKLV34-49, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
WDR3K562shRNABGKLV25-63,BGKLV25-64BGKLV25-1,BGKLV25-2redo transduction,redo transductionNotSatisfiedENCODE3
WDR3K562shRNAENCSR334BTAENCSR174OYCWDR3_BGKLV34-49,WDR3_BGKLV34-50NT_BGKLV34-1,NT_BGKLV34-294.4,95.1ReleasedENCODE3
WDR3HepG2shRNABGHLV22-53,BGHLV22-54BGHLV22-1,BGHLV22-20.0,0.0NotSatisfiedENCODE3
WDR3HepG2shRNABGHLV37-73,BGHLV37-74BGHLV37-1,BGHLV37-284.4,80.4NotSatisfiedENCODE3
WDR3HepG2shRNAENCSR902VPOENCSR225PRVWDR3-BGHLV37-75C,WDR3-BGHLV37-76Cnon-target-BGHLV37-1C,non-target-BGHLV37-2C81.7,79.5ReleasedENCODE4
WDR3HepG2shRNABGHLV37-77,BGHLV37-78BGHLV37-1,BGHLV37-232.1,35.2NotSatisfiedENCODE3
WDR3HepG2shRNABGHLV37-79,BGHLV37-80BGHLV37-1,BGHLV37-271.5,68.3NotSatisfiedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    WDR3: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Nucleolus
  • Cytoplasm
  • Cytosolic
  • Mitotic-Apparatus (Spindle; Centrosomes)












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    WDR3Product_ID: A301-553A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: WDR3-human    		 WDR3-HEPG2.png<br>Caption: Western blot following shRNA against WDR3 in HepG2 whole cell lysate using WDR3 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against WDR3. WDR3 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
    		 K562_Bethyl_A301-553A_1_WDR3.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using WDR3 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-WDR3 antibody (lanes under 'WDR3').
    		 WDR3-K562.png<br>Caption: Western blot following shRNA against WDR3 in K562 whole cell lysate using WDR3 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against WDR3. WDR3 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.








    RNA Targets
    • WDR3 protein binds to 19 RNA regions.  





    Proteins bound to RNA
    • WDR3 RNA is bound by 14 proteins.  






    WDR3 protein has 19 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 19 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    WDR3chr1922712322271288+3.191305.89357K562OAZ1intron-Distal,intron-Proximal
    WDR3chr896283689628535+5.7610811.19076K562TNKSintron-Distal
    WDR3chrX2015421820154291-3.915757.16670K562EIF1AXintron-Distal
    WDR3chr896296039629685+7.213509.05472K562TNKSintron-Distal
    WDR3chr2133015276133015335-6.361237.29968K562ANKRD30BLintron-Distal
    WDR3chr119345490393454953+3.1259457.18912K562KIAA1731intron-Distal
    WDR3chr202619014326190244-7.0281140.73485K562MIR663Aintron-Distal,intron-Proximal
    WDR3chr177521250175212570+4.598196.36811K562SEC14L13'-UTR,intron-Distal,intron-Proximal
    WDR3chr202618933826189381-5.443228.29289K562MIR663Aintron-Distal
    WDR3chr6133136469133136498+3.6970526.33442K562RPS12intron-Distal
    WDR3chr79847937798479428+3.0936760.62237K562TRRAPintron-Distal
    WDR3chr1173836013173836071-3.018988.25456K562GAS5intron-Distal,intron-Proximal
    WDR3chr191854824718548294-4.937236.63705K562ISYNA1intron-Distal
    WDR3chr202618995326190044-5.2613924.60873K562MIR663Aintron-Distal,intron-Proximal
    WDR3chr29755997997560085-3.374576.87166K562FAM178Bintron-Distal
    WDR3chr119345495393455030+3.29525400.00000K562KIAA1731intron-Distal,intron-Proximal
    WDR3chr3160232891160232920-3.39250400.00000K562KPNA4intron-Distal
    WDR3chr2133015221133015262-4.963466.86167K562ANKRD30BLintron-Distal
    WDR3chr202619004426190143-8.6831647.51603K562MIR663Aintron-Distal,intron-Proximal




    14 proteins are bound to WDR3 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr1118483508118483552+3'-UTR,CDS4.756605.23259HepG2BCLAF1
    chr1118483746118483786+3'-UTR,CDS,intron-Proximal4.559625.14565K562UCHL5
    chr1118482106118482210+3'-UTR,CDS,intron-Proximal3.912395.34520K562EFTUD2
    chr1118502744118502811+3'-UTR5.663839.81960K562TARDBP
    chr1118483498118483563+3'-UTR,CDS3.512846.14048K562ZNF622
    chr1118483502118483563+3'-UTR,CDS4.084685.52342HepG2PPIG
    chr1118483494118483562+3'-UTR,CDS3.391104.30396K562UCHL5
    chr1118502560118502612+3'-UTR4.366865.82137K562YBX3
    chr1118477084118477146+5'-UTR,CDS,intron-Proximal4.247893.35169HepG2U2AF2
    chr1118495575118495618+CDS3.321405.39086K562UCHL5
    chr1118496097118496125+CDS,intron-Proximal4.292393.77023K562ZNF622
    chr1118486018118486049+CDS,intron-Proximal4.252724.98640K562YBX3
    chr1118492747118492845+CDS,intron-Proximal5.092935.69951K562AQR
    chr1118496051118496144+CDS,intron-Proximal3.867006.39986K562SF3B4
    chr1118484415118484459+CDS4.422593.89826HepG2BCLAF1
    chr1118496637118496688+CDS3.837633.11149HepG2G3BP1
    chr1118492737118492808+CDS,intron-Proximal5.225347.58908K562PRPF8
    chr1118496098118496125+CDS,intron-Proximal3.689884.22563K562UCHL5
    chr1118495569118495620+CDS,intron-Proximal4.856617.48032HepG2G3BP1
    chr1118486049118486104+CDS3.227253.68829K562YBX3
    chr1118486158118486235+CDS4.188083.66655K562YBX3
    chr1118485143118485168+CDS,intron-Proximal3.991224.32914K562YBX3
    chr1118475959118476026+CDS,intron-Proximal4.521608.86236K562DDX3X
    chr1118485059118485144+CDS,intron-Proximal3.428104.61143K562UCHL5
    chr1118486158118486190+CDS4.170813.87995K562UCHL5
    chr1118499782118499861+CDS,intron-Proximal3.651574.50744HepG2U2AF2
    chr1118486317118486420+intron-Distal,intron-Proximal4.045393.12843K562PRPF8
    chr1118501433118501516+intron-Proximal3.959326.89441K562KHSRP
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein WDR3 and its RNA.



    Diffrential Expression
    • 4,409 differentially expressed genes after Knockdown/Knockout WDR3 protein.  





    • 106 RBPs can affect the levels of WDR3.  







    4,409 differentially expressed genes after Knockdown/Knockout WDR3 protein :

    Only display 100 entries as example. Please click "View All" button to see all 4,409 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    DPM1ENSG00000000419.81046.025401526.71350-0.545507.019805.58330K562WDR3
    C1orf112ENSG00000000460.12656.35850834.80380-0.347002.643601.78530K562WDR3
    CFHENSG00000000971.111052.613701688.29910-0.6816010.736108.96350K562WDR3
    NFYAENSG00000001167.10835.943301100.59380-0.396803.671602.66350K562WDR3
    LAS1LENSG00000001497.122564.909203391.00300-0.402805.082603.87910K562WDR3
    ANKIB1ENSG00000001629.51260.60080999.864000.334202.891101.99590K562WDR3
    KRIT1ENSG00000001631.101563.411601899.11120-0.280602.394901.57840K562WDR3
    LAP3ENSG00000002549.81190.152102159.25150-0.8594017.5774015.38190K562WDR3
    ICA1ENSG00000003147.13728.28050530.551800.456903.880602.83780K562WDR3
    CFLARENSG00000003402.151328.536502175.70010-0.7116012.4960010.57910K562WDR3
    TFPIENSG00000003436.103144.174702020.519000.6379010.659808.89840K562WDR3
    RBM5ENSG00000003756.122863.599502270.846100.334503.518602.53330K562WDR3
    SLC7A2ENSG00000003989.120.0000020.58210-99999.999996.447605.07810K562WDR3
    AK2ENSG00000004455.1210500.7159013132.97640-0.322704.031102.96900K562WDR3
    FKBP4ENSG00000004478.53136.820704661.24130-0.5714010.025708.31990K562WDR3
    NDUFAB1ENSG00000004779.5983.644801410.32200-0.519806.169704.83080K562WDR3
    PDK4ENSG00000004799.747.1628011.101702.086805.136703.92590K562WDR3
    SLC25A13ENSG00000004864.91268.225301771.71710-0.482305.983004.66820K562WDR3
    ST7ENSG00000004866.141071.03850784.623600.448804.108703.03470K562WDR3
    HCCSENSG00000004961.10690.94010874.14340-0.339302.509701.67340K562WDR3
    UPF1ENSG00000005007.82729.357203480.97360-0.350904.026702.96540K562WDR3
    SKAP2ENSG00000005020.8599.03010406.086900.560704.787903.62090K562WDR3
    SLC25A5ENSG00000005022.56554.476508280.35110-0.337204.170603.08920K562WDR3
    DHX33ENSG00000005100.8656.39310900.20490-0.455703.473902.49590K562WDR3
    RPAP3ENSG00000005175.51409.558801964.60230-0.479005.670404.39730K562WDR3
    ACSM3ENSG00000005187.74535.669102137.858501.0850032.2035029.47870K562WDR3
    AC004381.6ENSG00000005189.151155.53920800.811900.528906.025804.70660K562WDR3
    CIAPIN1ENSG00000005194.10803.183601022.12930-0.347802.714401.84600K562WDR3
    FAM214BENSG00000005238.15368.14050216.870800.763305.975104.66100K562WDR3
    CREBBPENSG00000005339.82357.650001917.209000.298202.548401.70510K562WDR3
    KMT2EENSG00000005483.155203.083404276.384300.282902.863801.97200K562WDR3
    IBTKENSG00000005700.101194.542401671.19620-0.484405.877104.57870K562WDR3
    MYCBP2ENSG00000005810.131209.264601478.30120-0.289802.360501.55040K562WDR3
    FBXL3ENSG00000005812.6431.52770324.379500.411702.434301.61120K562WDR3
    GGNBP2ENSG00000005955.82738.244702282.502300.262502.341101.53500K562WDR3
    ITGA2BENSG00000005961.13280.37330589.88040-1.0731014.3150012.28170K562WDR3
    OSBPL7ENSG00000006025.7678.04400473.460100.518004.584703.44340K562WDR3
    CX3CL1ENSG00000006210.60.0000014.14960-99999.999994.423403.30690K562WDR3
    TNFRSF12AENSG00000006327.9132.26370272.23680-1.041408.002006.46920K562WDR3
    JHDM1DENSG00000006459.61577.55850975.466100.6934010.886709.10150K562WDR3
    ETV1ENSG00000006468.9228.69090458.72270-1.0042010.948209.15220K562WDR3
    FARP2ENSG00000006607.9663.39100967.92910-0.545005.743604.46030K562WDR3
    GGCTENSG00000006625.131244.905801632.35440-0.390904.075003.00480K562WDR3
    DBF4ENSG00000006634.32371.423302856.56430-0.268502.495501.66140K562WDR3
    TBXA2RENSG00000006638.793.72960205.75020-1.134307.434705.95940K562WDR3
    ELAC2ENSG00000006744.141429.861001776.77510-0.313402.859901.96860K562WDR3
    SCINENSG00000006747.101228.15280655.864700.9049015.8333013.72190K562WDR3
    ARSDENSG00000006756.1153.752702.957904.1836012.3733010.47470K562WDR3
    CCDC124ENSG00000007080.61035.794001590.36550-0.618608.913407.30660K562WDR3
    MATKENSG00000007264.9361.14250572.52170-0.664806.301704.94770K562WDR3
    ST7LENSG00000007341.14500.87410377.821000.406602.571501.72480K562WDR3
    RPUSD1ENSG00000007376.3263.58660479.99710-0.864708.602507.02250K562WDR3
    RHBDF1ENSG00000007384.11511.32240301.228200.763305.963404.65140K562WDR3
    BAIAP3ENSG00000007516.9195.14640114.258900.772102.492401.65880K562WDR3
    DNAJC11ENSG00000007923.112645.059103744.73850-0.501605.477104.22630K562WDR3
    MYLIPENSG00000007944.101553.71200994.360500.643809.440307.78220K562WDR3
    PSMB1ENSG00000008018.84203.234905264.57520-0.324803.750402.73120K562WDR3
    JARID2ENSG00000008083.92849.012401938.754100.555208.593507.01420K562WDR3
    CYB561ENSG00000008283.11499.05530691.49740-0.470503.477702.49840K562WDR3
    MGST1ENSG00000008394.8312.75780667.07530-1.0928015.7660013.65910K562WDR3
    IL32ENSG00000008517.124.6441021.54440-2.213802.673901.81110K562WDR3
    CSDE1ENSG00000009307.1116259.3017020102.53420-0.306103.762302.74090K562WDR3
    TENM1ENSG00000009694.91535.954801095.100000.488004.845203.66890K562WDR3
    VTA1ENSG00000009844.111324.551101842.40840-0.476105.909704.60690K562WDR3
    BAZ1BENSG00000009954.66579.665708724.39640-0.407005.819804.52670K562WDR3
    SPRTNENSG00000010072.11477.05810620.95750-0.380302.613801.76090K562WDR3
    DYRK4ENSG00000010219.9102.82990160.82690-0.645202.587401.73930K562WDR3
    ZNF207ENSG00000010244.129509.376507756.784400.293803.290902.33930K562WDR3
    STARD3NLENSG00000010270.9486.87980670.73000-0.462203.744302.72630K562WDR3
    IDSENSG00000010404.131270.04330821.863100.627808.352706.78950K562WDR3
    LRRC23ENSG00000010626.10140.5470088.689900.664102.434501.61130K562WDR3
    TCEB3ENSG00000011007.81788.397402439.36130-0.447805.734604.45230K562WDR3
    MRC2ENSG00000011028.91083.24450724.759300.579706.877405.45870K562WDR3
    ABHD5ENSG00000011198.32485.646301013.051401.2948038.6772035.77170K562WDR3
    UTP18ENSG00000011260.9901.553301125.65580-0.320302.589501.74080K562WDR3
    RNF216ENSG00000011275.141917.649401593.361300.267202.256501.46690K562WDR3
    PTBP1ENSG00000011304.128585.1436011312.55930-0.398005.789404.49970K562WDR3
    LARS2ENSG00000011376.51238.130401801.77060-0.541307.323405.85900K562WDR3
    PIK3C2AENSG00000011405.92182.073801712.526200.349503.551702.56140K562WDR3
    ANLNENSG00000011426.63279.185602363.816300.472106.590205.20570K562WDR3
    QPCTLENSG00000011478.7267.28760395.65850-0.565903.883402.84020K562WDR3
    CEP68ENSG00000011523.9685.73040467.368800.553005.044703.84720K562WDR3
    MAP4K3ENSG00000011566.10799.70030579.115400.465504.130603.05430K562WDR3
    TMEM159ENSG00000011638.6279.05590171.800700.699704.440903.32130K562WDR3
    BRCA1ENSG00000012048.152477.898003060.54650-0.304703.066802.14700K562WDR3
    CD22ENSG00000012124.10423.93530229.167000.887305.477404.22630K562WDR3
    LTFENSG00000012223.818.953302.299003.043302.426301.60490K562WDR3
    ALOX5ENSG00000012779.6171.5184067.538901.344508.275306.71980K562WDR3
    CALCOCO1ENSG00000012822.111053.99620541.994600.9594016.3201014.18820K562WDR3
    UBR7ENSG00000012963.91156.826901466.76310-0.342503.193002.25710K562WDR3
    MAN2B2ENSG00000013288.4788.49930579.973300.443003.766402.74390K562WDR3
    PGM3ENSG00000013375.112373.235501827.524900.376903.786102.75950K562WDR3
    POLR3BENSG00000013503.5397.35580614.52500-0.629005.934304.62630K562WDR3
    DNASE1L1ENSG00000013563.9488.47930329.261900.569004.376603.26680K562WDR3
    ZC3H3ENSG00000014164.6924.33540744.402700.312202.187101.40950K562WDR3
    MTMR11ENSG00000014914.1564.2958021.454401.583404.749003.58740K562WDR3
    WASENSG00000015285.6225.61650319.99930-0.504202.898002.00180K562WDR3
    BIDENSG00000015475.14515.34160750.63620-0.542605.163303.94910K562WDR3
    IGF1ENSG00000017427.11151.2789065.434301.209006.499205.12260K562WDR3
    SLC38A5ENSG00000017483.101936.609202885.83030-0.575505.043703.84650K562WDR3
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    106 RBPs can affect the gene expression of WDR3 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    WDR3ENSG00000065183.11772.23600963.63940-0.319502.010101.47680HepG2ACO1
    WDR3ENSG00000065183.111262.061401701.18810-0.430807.106206.08770HepG2AUH
    WDR3ENSG00000065183.11809.552801063.89520-0.394202.202401.36970HepG2BCCIP
    WDR3ENSG00000065183.11671.61520924.45370-0.461003.043902.09970HepG2BCLAF1
    WDR3ENSG00000065183.111521.968701033.870100.557806.233505.37750HepG2BOP1
    WDR3ENSG00000065183.11603.13440809.33410-0.424302.988401.71070HepG2BUD13
    WDR3ENSG00000065183.111082.09280891.164300.280003.114602.23360HepG2DDX19B
    WDR3ENSG00000065183.11665.07890866.25240-0.381303.420102.13030HepG2DDX1
    WDR3ENSG00000065183.11974.099001359.91320-0.481403.790703.07010HepG2DDX3X
    WDR3ENSG00000065183.11394.597301168.01380-1.5656025.1714023.58370HepG2DDX6
    WDR3ENSG00000065183.11694.66270921.90570-0.408303.937203.15690HepG2DKC1
    WDR3ENSG00000065183.11584.83810849.41910-0.538406.421005.38660HepG2DNAJC21
    WDR3ENSG00000065183.11652.86670841.87460-0.366804.249903.47460HepG2DNAJC2
    WDR3ENSG00000065183.11476.719301123.01840-1.2362018.4961017.05820HepG2EIF2S1
    WDR3ENSG00000065183.111581.366201305.037300.277002.852502.00480HepG2EIF4G1
    WDR3ENSG00000065183.111612.968301953.17390-0.276103.351702.69950HepG2ETF1
    WDR3ENSG00000065183.11601.80720950.79520-0.659802.452801.50140HepG2FTO
    WDR3ENSG00000065183.11769.497601161.56110-0.594105.056504.16950HepG2G3BP1
    WDR3ENSG00000065183.11774.691001075.86510-0.473803.358402.65760HepG2GPKOW
    WDR3ENSG00000065183.11539.72030857.55630-0.668007.067406.10640HepG2HNRNPA1
    WDR3ENSG00000065183.11984.472001371.22410-0.478007.343006.24580HepG2HNRNPF
    WDR3ENSG00000065183.11974.309501205.13330-0.306704.058603.25490HepG2HNRNPL
    WDR3ENSG00000065183.11989.686501350.26530-0.448204.967404.02360HepG2IGF2BP1
    WDR3ENSG00000065183.11682.39610967.89650-0.504208.630507.40450HepG2ILF2
    WDR3ENSG00000065183.11704.60220880.80050-0.322002.770601.75230HepG2KIF1C
    WDR3ENSG00000065183.111584.837901252.446800.339502.269101.67280HepG2MAGOH
    WDR3ENSG00000065183.111690.765501259.499100.424702.605001.99140HepG2MATR3
    WDR3ENSG00000065183.11606.865901047.23040-0.787105.489204.09680HepG2MTPAP
    WDR3ENSG00000065183.111133.75020953.290300.250002.276801.56750HepG2PRPF4
    WDR3ENSG00000065183.11816.95490981.50880-0.264702.504701.91060HepG2PUS1
    WDR3ENSG00000065183.11850.218501131.82420-0.412703.912902.91320HepG2RBM15
    WDR3ENSG00000065183.11855.572001306.29990-0.6105010.281509.36020HepG2NELFE
    WDR3ENSG00000065183.11926.520201216.65790-0.393004.837904.05270HepG2RECQL
    WDR3ENSG00000065183.111025.307701200.57340-0.227702.435901.77180HepG2SLBP
    WDR3ENSG00000065183.111733.226401275.554300.442207.335906.65140HepG2SRSF1
    WDR3ENSG00000065183.111061.687601347.17900-0.343604.168803.34100HepG2SRSF7
    WDR3ENSG00000065183.111148.795601600.91000-0.478808.535307.73170HepG2SSB
    WDR3ENSG00000065183.111345.38840960.314200.486303.729102.25750HepG2SSRP1
    WDR3ENSG00000065183.111677.992701406.073400.255002.841702.21350HepG2SUCLG1
    WDR3ENSG00000065183.111468.04380972.662500.593804.612002.88930HepG2SUGP2
    WDR3ENSG00000065183.11514.327201041.31080-1.0176011.6092010.38430HepG2SUPV3L1
    WDR3ENSG00000065183.11499.10110697.96040-0.483802.858401.84690HepG2TFIP11
    WDR3ENSG00000065183.11607.09410920.77930-0.600907.160406.42460HepG2TIAL1
    WDR3ENSG00000065183.11788.41110928.95190-0.236702.014001.51840HepG2TRIM56
    WDR3ENSG00000065183.11582.779101205.07480-1.048103.341802.25560HepG2U2AF2
    WDR3ENSG00000065183.11404.55360615.14140-0.604604.532903.55980HepG2UCHL5
    WDR3ENSG00000065183.11944.205801117.06840-0.242502.323901.67580HepG2UPF1
    WDR3ENSG00000065183.11551.52460953.54910-0.789905.535904.08370HepG2UPF2
    WDR3ENSG00000065183.11605.170501025.05600-0.760307.654806.45990HepG2XRN2
    WDR3ENSG00000065183.11760.55720940.76880-0.306803.169902.45960HepG2ZC3H8
    WDR3ENSG00000065183.11999.671301228.56770-0.297503.826403.21170HepG2ZNF622
    WDR3ENSG00000065183.112627.734301916.948100.454904.507902.96090K562AARS
    WDR3ENSG00000065183.115873.332804723.261700.314303.086001.77340K562APOBEC3C
    WDR3ENSG00000065183.112892.163804392.36430-0.602805.603404.81890K562AQR
    WDR3ENSG00000065183.112280.368502887.31220-0.340504.997203.13770K562BCCIP
    WDR3ENSG00000065183.112043.771502790.19650-0.449109.872708.03810K562BCLAF1
    WDR3ENSG00000065183.111504.772102045.75000-0.443104.113003.04700K562BOP1
    WDR3ENSG00000065183.112319.935604321.75830-0.897503.287302.11230K562CNOT7
    WDR3ENSG00000065183.111491.236702175.29910-0.544705.455004.36120K562CPSF6
    WDR3ENSG00000065183.111706.616502116.77990-0.310703.651202.41250K562CSTF2
    WDR3ENSG00000065183.112908.720902446.474700.249603.195101.75950K562DDX27
    WDR3ENSG00000065183.111078.763201553.80140-0.526406.815405.09080K562DDX3X
    WDR3ENSG00000065183.116409.189004067.511400.6559023.4609021.74680K562DDX47
    WDR3ENSG00000065183.112395.001702058.737300.218202.061501.31730K562DKC1
    WDR3ENSG00000065183.111849.811902280.25620-0.301802.120301.32020K562EFTUD2
    WDR3ENSG00000065183.111298.633501706.53090-0.394106.080204.26340K562EIF2S1
    WDR3ENSG00000065183.112186.113203962.42090-0.8580010.404909.14700K562EIF2S2
    WDR3ENSG00000065183.112739.723502041.717400.424105.065704.00340K562EIF3G
    WDR3ENSG00000065183.111329.618101623.26960-0.287902.266701.52170K562EIF4A3
    WDR3ENSG00000065183.111189.632101461.77610-0.297203.059801.82740K562EIF4B
    WDR3ENSG00000065183.114409.664805352.66370-0.279602.940401.97280K562EIF4G2
    WDR3ENSG00000065183.111564.029001980.33380-0.340503.027501.70110K562EXOSC5
    WDR3ENSG00000065183.112527.983803568.70550-0.497406.225104.91630K562FIP1L1
    WDR3ENSG00000065183.111444.792602213.16060-0.615206.950305.56980K562FMR1
    WDR3ENSG00000065183.111053.304901875.78620-0.8326011.471509.47820K562FTO
    WDR3ENSG00000065183.111473.123401805.07160-0.293202.603501.30290K562FUS
    WDR3ENSG00000065183.113156.488801688.120200.9028029.9820028.12730K562FXR1
    WDR3ENSG00000065183.112450.889601880.517600.382102.341601.69910K562G3BP2
    WDR3ENSG00000065183.112280.142002803.47390-0.298103.688202.37910K562GLRX3
    WDR3ENSG00000065183.111340.495702076.93910-0.631705.486404.37370K562GPKOW
    WDR3ENSG00000065183.113793.537105280.87580-0.477203.359102.52840K562GRSF1
    WDR3ENSG00000065183.11982.491602098.37950-1.0948011.9466010.77820K562HNRNPC
    WDR3ENSG00000065183.113276.506202286.706800.518802.883201.62330K562HNRNPK
    WDR3ENSG00000065183.113632.654002935.294000.307402.112401.30630K562HNRNPM
    WDR3ENSG00000065183.112589.063103117.91540-0.268203.035702.10240K562HNRNPU
    WDR3ENSG00000065183.113493.378104838.43110-0.469905.814304.67410K562HSPD1
    WDR3ENSG00000065183.111659.799502288.60330-0.463503.552902.33420K562IGF2BP2
    WDR3ENSG00000065183.111322.707201773.27960-0.422902.623101.71750K562KRR1
    WDR3ENSG00000065183.113073.713002406.003400.353202.550101.74270K562MAGOH
    WDR3ENSG00000065183.111618.655101943.40680-0.263802.356501.39160K562MAK16
    WDR3ENSG00000065183.111574.369002027.29740-0.364802.993102.08010K562METAP2
    WDR3ENSG00000065183.113682.949005705.59130-0.631507.597605.77990K562MSI2
    WDR3ENSG00000065183.112458.245802947.47870-0.261903.832702.89480K562MTPAP
    WDR3ENSG00000065183.112500.674603274.96140-0.3892011.5927010.20830K562NSUN2
    WDR3ENSG00000065183.111248.259202370.42020-0.925202.288601.40500K562PABPN1
    WDR3ENSG00000065183.112664.200402140.888100.315402.829401.84040K562PCBP2
    WDR3ENSG00000065183.111581.161002518.98160-0.671908.033306.61730K562PCBP3
    WDR3ENSG00000065183.111382.713901932.19470-0.482706.343705.13540K562POLR2G
    WDR3ENSG00000065183.112814.562804051.16180-0.525406.666205.29490K562PPIG
    WDR3ENSG00000065183.112931.032102218.944400.401404.021503.11760K562PRPF8
    WDR3ENSG00000065183.111191.414001881.31250-0.659105.355604.04310K562PSIP1
    WDR3ENSG00000065183.113436.477902337.525400.555807.211106.17680K562PTBP1
    WDR3ENSG00000065183.111595.583901848.55640-0.212301.908301.40010K562RBM15
    WDR3ENSG00000065183.113189.030402260.456800.496404.808303.72880K562RPS19
    WDR3ENSG00000065183.111442.622801975.01020-0.453203.620802.50100K562SF3B1
    WDR3ENSG00000065183.111186.145701626.72700-0.455703.577102.36710K562SRFBP1
    WDR3ENSG00000065183.111619.149402163.90420-0.418404.145002.81790K562SRSF5
    WDR3ENSG00000065183.112117.951102570.55680-0.279403.438002.12280K562SRSF7
    WDR3ENSG00000065183.111610.137302106.07900-0.387405.360903.47390K562SSB
    WDR3ENSG00000065183.113424.012204282.67040-0.322802.580401.37680K562STAU1
    WDR3ENSG00000065183.111552.562002148.79700-0.468903.089702.01560K562SUPV3L1
    WDR3ENSG00000065183.113015.655801937.972600.6378012.4154010.68290K562SYNCRIP
    WDR3ENSG00000065183.111520.233702319.30130-0.609407.550606.31580K562TARDBP
    WDR3ENSG00000065183.111730.023802237.17900-0.370904.103603.07860K562TIA1
    WDR3ENSG00000065183.111065.330801809.56900-0.764306.544705.05290K562TIAL1
    WDR3ENSG00000065183.111763.020102194.89630-0.316102.688301.61430K562TRA2A
    WDR3ENSG00000065183.112887.369904083.21870-0.5000013.4462010.72240K562TROVE2
    WDR3ENSG00000065183.111420.783201883.42220-0.406704.849103.78780K562U2AF2
    WDR3ENSG00000065183.111172.807402274.04730-0.9553015.9173013.47590K562UCHL5
    WDR3ENSG00000065183.112361.982403472.50720-0.5560016.2767014.70020K562UPF1
    WDR3ENSG00000065183.11316.867702971.32100-3.22920184.58560180.66580K562WDR3
    WDR3ENSG00000065183.113877.589203089.786500.327604.958003.85540K562WDR43
    WDR3ENSG00000065183.113930.804205202.95260-0.404503.565702.08870K562WRN
    WDR3ENSG00000065183.112722.577401734.371900.650503.391701.59420K562XRCC6
    WDR3ENSG00000065183.113232.307204948.72960-0.614505.490304.20670K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    318 alternative splicing events after Knockdown/Knockout WDR3 protein :

    Only display 100 entries as example. Please click "View All" button to see all 318 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEASCC2ENSG00000100325.10chr22-3022952930229603302282333022833130234166302342170.119000.000420.08105includedK562WDR3
    SEEPB41L2ENSG00000079819.12chr6-1311992431311993901311907021311912661312062351312064080.152000.000120.03515includedK562WDR3
    SELUC7L3ENSG00000108848.11chr17+4882856748828723488278614882805548829560488299110.067000.000010.00532includedK562WDR3
    SESLMO1ENSG00000141391.9chr18+1242032312420492124078941240800612421538124216280.480000.000070.02556includedK562WDR3
    SETMEM161BENSG00000164180.9chr5-8751711787517288875164318751653687521585875216830.131000.000020.00943includedK562WDR3
    SEWACENSG00000095787.17chr10+2888466128884970288796482887976128897114288973600.079000.000040.01699includedK562WDR3
    SEDHX9ENSG00000135829.12chr1+1828247111828248481828231751828233131828256661828257070.063000.000350.07257includedK562WDR3
    SETTLL3ENSG00000214021.11chr3+9876110987618798706439871079987636498765910.057000.000380.07553includedK562WDR3
    SENSUN6ENSG00000241058.1chr10-1893249718932569189314041893148418937418189375740.070000.000020.01098includedK562WDR3
    SEKIF23ENSG00000137807.9chr15+6973310669733418697326466973282669737128697373800.286000.000000.00012includedK562WDR3
    SEDNAH14ENSG00000185842.10chr1+2251478542251480042251426602251428002251521802251523110.117000.000000.00140includedK562WDR3
    SEUBA6-AS1ENSG00000248049.2chr4+6858613968586769685670786856720268594257685944040.261000.000140.03964includedK562WDR3
    SEZNF207ENSG00000010244.12chr17+3069368330693776306923483069250630694790306949620.211000.000000.00000includedK562WDR3
    SEPFDN5ENSG00000123349.9chr12+5369000253690059536893355368942353691633536917080.088000.000080.02690includedK562WDR3
    SEANKRD28ENSG00000206560.6chr3-1583791115837953158367291583681315900883159012780.290000.000520.09280includedK562WDR3
    SENQO2ENSG00000124588.15chr6+3004728300488530002223000319300670130067930.079000.000010.00441includedK562WDR3
    SEPSMD6ENSG00000163636.6chr3-6400831864008477640079936400819964008950640091480.096000.000000.00113includedK562WDR3
    SETNNT1ENSG00000105048.12chr19-5565322455653288556493285564944255656911556569330.117000.000090.02870includedK562WDR3
    SEDLGAP5ENSG00000126787.8chr14-5561531155615402556148295561519155617516556175660.067000.000500.09103includedK562WDR3
    SEMAP4ENSG00000047849.17chr3-4796020847960331479574404795866447963254479633680.095000.000300.06239includedK562WDR3
    SESREK1ENSG00000153914.11chr5+6545189265454760654492906544942465455046654551620.241000.000000.00000includedK562WDR3
    SERNF14ENSG00000013561.13chr5+1413502681413504421413487001413487321413531471413533070.101000.000500.09067includedK562WDR3
    SEMRPL55ENSG00000162910.14chr1-2282956772282958382282953682282955702282959352282960190.096000.000010.00359includedK562WDR3
    SEHDDC2ENSG00000111906.13chr6-1256198591256199621256139731256140551256216831256218050.085000.000490.09039includedK562WDR3
    SEACIN1ENSG00000100813.10chr14-2353652223537880235351742353521723538684235387340.089000.000200.05055includedK562WDR3
    SEORC1ENSG00000085840.8chr1-5284950152849609528490915284924152850221528503930.090000.000000.00001includedK562WDR3
    SENOL8ENSG00000198000.7chr9-9508551795085633950839499508402895085722950857850.084000.000470.08792includedK562WDR3
    SEPTBP1ENSG00000011304.12chr19+8054918055698050128051878064078065560.109000.000090.03030includedK562WDR3
    SEMRRFENSG00000148187.13chr9+1250483171250484451250474471250475661250540271250540770.267000.000000.00268includedK562WDR3
    SESMYD2ENSG00000143499.9chr1+2145080712145081792145075422145076512145100462145101770.062000.000130.03719includedK562WDR3
    SETATDN2ENSG00000157014.6chr3+1032034710320444103199621032014610320568103207180.230000.000050.01901includedK562WDR3
    SECCNL2ENSG00000221978.7chr1-1328058132818313261451326245132877513288400.210000.000090.03002includedK562WDR3
    SERPL32P3ENSG00000251474.2chr3-1291150591291152631291124771291126381291158821291159830.173000.000050.01899includedK562WDR3
    SESRSF6ENSG00000124193.10chr20+4208779242088060420870004208714942088410420885350.278000.000000.00000includedK562WDR3
    SEHMGN1ENSG00000205581.6chr21-4071775540719218407170604071720040719304407194090.239000.000040.01707includedK562WDR3
    SEGOLIM4ENSG00000173905.4chr3-1677585731677586571677546231677547821677591791677592620.275000.000040.01591includedK562WDR3
    SEARHGAP6ENSG00000047648.17chrX-1116674911166839111620991116236811174648111747460.134000.000000.00161includedK562WDR3
    SER3HDM1ENSG00000048991.12chr2+1363991051363993601363964651363966921364029481364030970.137000.000250.05715includedK562WDR3
    SELEF1ENSG00000138795.5chr4-1090027411090028251090006471090007701090045111090046020.210000.000090.02870includedK562WDR3
    SEDDX46ENSG00000145833.11chr5+1341257951341259121341242021341242811341261591341262420.190000.000020.00905includedK562WDR3
    SECRLS1ENSG00000088766.7chr20+5987312598748059867355987198599042059905580.154000.000410.07944includedK562WDR3
    SERP11-669N7.2ENSG00000249196.2chr12+1295959641295960601295955371295956841295976091295978380.135000.000020.00874includedK562WDR3
    SEZRANB2ENSG00000132485.8chr1-7153136071531435715290197153082071532458715326170.122000.000230.05458includedK562WDR3
    SEBPTFENSG00000171634.12chr17+6587167165871860658709326587113665882243658824320.113000.000380.07553includedK562WDR3
    SEBPTFENSG00000171634.12chr17+6592507465925236659244706592471765925451659256030.098000.000190.04836includedK562WDR3
    SEWSB1ENSG00000109046.10chr17+2563476925634945256338072563390825636125256362980.159000.000560.09797includedK562WDR3
    SEHNRNPDLENSG00000152795.13chr4-8334671583346820833457818334603683347189833472820.207000.000000.00000includedK562WDR3
    SEUPF3AENSG00000169062.10chr13+1150517331150518751150483111150484181150519931150521040.179000.000240.05484includedK562WDR3
    SEBRIP1ENSG00000136492.4chr17-5981657159816771597933115979342459820373598204950.196000.000130.03719includedK562WDR3
    SECYB5R4ENSG00000065615.9chr6+8463585484636050846341888463431184644313846444540.180000.000010.00738includedK562WDR3
    SELUC7LENSG00000007392.12chr16-2585992586632580762581872706472707460.239000.000000.00012includedK562WDR3
    SENT5C3AENSG00000122643.14chr7-3307554533075600330664283306652733102179331024080.356000.000000.00005includedK562WDR3
    SEMPC1ENSG00000060762.14chr6-1667804561667806721667802821667803791667837051667837090.075000.000030.01191includedK562WDR3
    SENCAPG2ENSG00000146918.15chr7-1584435231584436641584391511584392551584449841584451720.110000.000200.04963includedK562WDR3
    SEHRASENSG00000174775.12chr11-5332765333585322415327555334525336120.310000.000070.02590includedK562WDR3
    SETFPIENSG00000003436.10chr2-1883940901883942121883683741883684971884189261884190760.103000.000130.03694includedK562WDR3
    SECARSENSG00000110619.12chr11-3068982306923130633943063486307857230786480.129000.000140.03964includedK562WDR3
    SEMDH1ENSG00000014641.13chr2+6382453263824708638161156381618063826303638264220.052000.000470.08717includedK562WDR3
    SEAKAP9ENSG00000127914.12chr7+9167135991671500916699879167021291671981916720850.296000.000070.02443includedK562WDR3
    SETLK1ENSG00000198586.9chr2-1718793811718796391718713601718714581718848481718849150.077000.000360.07277includedK562WDR3
    SEUQCRHENSG00000173660.7chr1+4677556846775716467747724677479946775826467759880.119000.000000.00022includedK562WDR3
    SEPCYT2ENSG00000185813.6chr17-7986703779867197798667537986691379867389798674780.054000.000010.00788includedK562WDR3
    SESRP9ENSG00000143742.8chr1+2259745632259746872259710012259710702259769412259781680.067000.000000.00053includedK562WDR3
    SERFC5ENSG00000111445.9chr12+1184554941184556201184545051184546971184568761184569410.058000.000000.00207includedK562WDR3
    SETRIM25ENSG00000121060.10chr17-5498610754986238549858285498592454990752549913880.120000.000000.00010includedK562WDR3
    SENABP1ENSG00000173559.8chr2+1925472171925473211925466711925467431925484541925485300.134000.000090.02992includedK562WDR3
    SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.140000.000000.00001includedK562WDR3
    SEABCA7ENSG00000064687.8chr19+1057864105805810573121057428105814410581560.085000.000140.03895includedK562WDR3
    SEPABPC4ENSG00000090621.9chr1-4002950740029594400292854002941340030094400302140.187000.000000.00127includedK562WDR3
    SERNASEH2BENSG00000136104.14chr13+5148713051487267514838135148427651501542515016140.057000.000360.07261includedK562WDR3
    SERBM39ENSG00000131051.16chr20-3432840534328519343268893432693934328745343288090.067000.000380.07553includedK562WDR3
    SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.111000.000000.00028includedK562WDR3
    SETEX30ENSG00000151287.12chr13-1034196221034198281034184591034189301034206091034206610.204000.000180.04725includedK562WDR3
    SEIP6K2ENSG00000068745.10chr3-4875282148752960487314834873285148754589487546470.110000.000170.04365includedK562WDR3
    SEPOT1ENSG00000128513.10chr7-1245109641245110951245034031245036941245323191245324340.110000.000020.01065includedK562WDR3
    SEMCM3ENSG00000112118.13chr6-5213003252130183521294185212958452130872521309420.156000.000170.04409includedK562WDR3
    SEZNF706ENSG00000120963.7chr8-1022145601022146751022138341022139711022176621022179600.072000.000000.00004includedK562WDR3
    SERPL17ENSG00000265681.2chr18-4701810547018203470178864701795447018644470187690.197000.000000.00014includedK562WDR3
    SENEMFENSG00000165525.13chr14-5026295050263046502625085026266250266192502662420.052000.000190.04836includedK562WDR3
    SESRRM1ENSG00000133226.12chr1+2497356924973699249731572497328024975349249755200.285000.000000.00000includedK562WDR3
    SEDBF4BENSG00000161692.13chr17+4280954542809633428083324280838342811457428115310.334000.000370.07529includedK562WDR3
    SESNAP23ENSG00000092531.5chr15+4282045942820618428074344280755242821872428220170.058000.000460.08560includedK562WDR3
    SEUSP15ENSG00000135655.9chr12+6276817062768316627492086274925662775270627754440.107000.000380.07553includedK562WDR3
    SEADAM9ENSG00000168615.7chr8+3893366538933794389288163892892238934746389349300.079000.000180.04689includedK562WDR3
    SEMEF2CENSG00000081189.9chr5-8815862388158779881195518811974788178771881789640.071000.000530.09316includedK562WDR3
    SEMON2ENSG00000061987.10chr12+6295979362959811629590166295916062960101629602300.242000.000020.00938includedK562WDR3
    SETHEM4ENSG00000159445.8chr1-1518624581518626901518616891518618491518674831518676700.353000.000230.05476includedK562WDR3
    SESRSF3ENSG00000112081.12chr6+3656759736568053365665843656676036568928365689670.078000.000000.00000includedK562WDR3
    SESMC1AENSG00000072501.13chrX-5344170653441819534401815344038553449440534496030.115000.000240.05484includedK562WDR3
    SEPTPRCENSG00000081237.14chr1+1986686921986688331986614751986615021986724261986725010.184000.000220.05284includedK562WDR3
    SEZMIZ2ENSG00000122515.10chr7+4480556544805655448049334480517844805762448059320.199000.000130.03678includedK562WDR3
    SESRSF11ENSG00000116754.9chr1+7069754170697658706941047069423870697950706980580.071000.000070.02617includedK562WDR3
    SEBCLAF1ENSG00000029363.11chr6-1365902781365904411365892991365894771365905741365907500.140000.000250.05701includedK562WDR3
    SEPARLENSG00000175193.8chr3-1835515111835516131835512791835513771835583571835584060.173000.000000.00124includedK562WDR3
    SECD2APENSG00000198087.7chr6+4749436347494476474710154747117647501337475014910.070000.000480.08864includedK562WDR3
    SERBM6ENSG00000004534.10chr3+5008459250084759500368725003694650085677500857520.188000.000010.00500includedK562WDR3
    SECNDP2ENSG00000133313.10chr18+7216474372164830721636177216366672167171721672680.239000.000410.07944includedK562WDR3
    SEMAXENSG00000125952.14chr14-6554406165544146655431796554338165544630655447540.117000.000260.05821includedK562WDR3
    SEEEF1DENSG00000104529.13chr8-1446748161446750631446720071446722511446795171446795850.179000.000150.04047includedK562WDR3
    SETPTEP1ENSG00000100181.17chr22+1712805717128147171194681711963017128552171286750.162000.000320.06764includedK562WDR3





    2 RBPs can affect the splicing of WDR3 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEWDR3ENSG00000065183.11chr1+118497937118497981118497166118497250118499690118499819-0.148000.000000.00001excludedK562AQR
    SEWDR3ENSG00000065183.11chr1+118497937118497981118497082118497250118499690118499819-0.096000.001580.03271excludedK562U2AF1
    MXEWDR3ENSG00000065183.11chr1+1184996901184998191185015321185016261184972021184972501185019141185091650.136000.000150.004551includedK562U2AF1

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein WDR3 and its RNA.