RHBDF1

General Information

Gene Name       : RHBDF1
Gene ID             : ENSG00000007384.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RHBDF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RHBDF1ENSG00000007384.150.000.270.14ENCSR000AEF
HepG2RHBDF1ENSG00000007384.1513.794.649.21ENCSR985KAT
K562RHBDF1ENSG00000007384.154.002.803.40ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RHBDF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RHBDF1 RNA is bound by 12 proteins.  







eCLIP assay for RHBDF1 is not avaliable on ENCORE database.





12 proteins are bound to RHBDF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr16110231110278-3'-UTR,CDS,intron-Distal,intron-Proximal3.910995.57819K562UCHL5
chr16111267111346-3'-UTR,CDS,intron-Distal,intron-Proximal3.832185.69590K562DDX24
chr16113766113869-3'-UTR,CDS,intron-Distal,intron-Proximal3.316027.11699K562SF3B4
chr16109823109919-3'-UTR,CDS,intron-Distal,intron-Proximal5.9598812.01365K562SF3B4
chr16109093109158-3'-UTR,CDS,intron-Distal,intron-Proximal3.789926.80869K562AQR
chr16111269111349-3'-UTR,CDS,intron-Distal,intron-Proximal5.280526.03057K562EFTUD2
chr16110532110599-3'-UTR,CDS,intron-Distal,intron-Proximal3.3794910.30372K562SF3B4
chr16113726113797-3'-UTR,CDS,intron-Distal,intron-Proximal4.315257.40437K562DDX24
chr16111160111247-3'-UTR,CDS,intron-Distal3.497344.51666K562RBM15
chr16109790109846-3'-UTR,CDS,intron-Distal,intron-Proximal3.500084.88100K562AQR
chr16109032109085-3'-UTR,CDS,intron-Distal4.660224.77252K562ZNF622
chr16113799113820-3'-UTR,intron-Distal,intron-Proximal3.596404.41130K562AQR
chr16113734113799-3'-UTR,CDS,intron-Distal,intron-Proximal3.992115.83621K562AQR
chr16113764113839-3'-UTR,CDS,intron-Distal,intron-Proximal4.378189.79392K562BUD13
chr16109380109431-3'-UTR,CDS,intron-Distal,intron-Proximal4.864996.01989HepG2PRPF8
chr16109220109287-3'-UTR,CDS,intron-Distal,intron-Proximal4.073673.79199HepG2PPIG
chr16111180111305-3'-UTR,CDS,intron-Distal,intron-Proximal3.353806.46814K562ZNF622
chr16112556112643-5'-UTR,CDS,intron-Distal4.127123.79199HepG2PPIG
chr16112569112632-5'-UTR,CDS,intron-Distal4.324214.12139K562DDX24
chr16112026112073-5'-UTR,CDS,intron-Distal,intron-Proximal3.844635.55508K562BUD13
chr16112545112574-5'-UTR,CDS,intron-Distal3.996163.28461K562BUD13
chr16111094111111-CDS,intron-Distal,intron-Proximal3.428593.63681K562RBM15
chr16108928108972-intron-Distal,intron-Proximal5.128008.52787K562AQR
chr16109952110009-intron-Distal3.455116.51619K562AQR
chr16114622114680-intron-Distal,intron-Proximal3.211233.89662K562BUD13
chr16121933122020-intron-Distal5.619357.29411HepG2XPO5
chr16110558110608-intron-Distal,intron-Proximal3.586343.34231K562RBM15
chr16110544110620-intron-Distal,intron-Proximal4.083656.87424K562BUD13
chr16114627114697-intron-Distal,intron-Proximal6.6397319.71511K562AQR
chr16110852110970-intron-Distal,intron-Proximal3.504193.77680K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RHBDF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RHBDF1 is not available on ENCORE database.

  • 125 RBPs can affect the levels of RHBDF1.  








The Knockdown/knockout RNA-Seq assay for RHBDF1 is not available on ENCORE database.





125 RBPs can affect the gene expression of RHBDF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RHBDF1ENSG00000007384.11742.12790322.762301.2011026.2456024.81480HepG2ACO1
RHBDF1ENSG00000007384.11399.72560134.364101.572807.187306.37460HepG2AKAP1
RHBDF1ENSG00000007384.11618.13640355.414800.798306.425504.88020HepG2AKAP8
RHBDF1ENSG00000007384.11470.29100324.318500.536004.649103.67520HepG2AKAP8L
RHBDF1ENSG00000007384.11771.59310310.368101.3138028.8238027.03410HepG2AUH
RHBDF1ENSG00000007384.11364.57490159.862301.189307.493705.91180HepG2BCCIP
RHBDF1ENSG00000007384.11350.51310246.241100.509303.272802.58560HepG2CELF1
RHBDF1ENSG00000007384.11257.88810164.073400.652303.386202.64100HepG2DDX21
RHBDF1ENSG00000007384.1186.50200160.73350-0.893903.883702.78900HepG2DDX24
RHBDF1ENSG00000007384.11231.49880128.678100.847103.930503.19600HepG2DDX3X
RHBDF1ENSG00000007384.11308.70870585.14000-0.922509.933107.68910HepG2DDX47
RHBDF1ENSG00000007384.11445.52430157.191601.5029012.6548011.14690HepG2DDX55
RHBDF1ENSG00000007384.11524.13390110.613802.2443030.5268028.80730HepG2DDX6
RHBDF1ENSG00000007384.11217.04240308.80840-0.508702.961502.26320HepG2DKC1
RHBDF1ENSG00000007384.11403.40750186.509501.1129013.1055011.66700HepG2DNAJC21
RHBDF1ENSG00000007384.11406.14540106.259701.9343022.3772020.80090HepG2EIF2S1
RHBDF1ENSG00000007384.11202.22550117.392600.784503.264802.57240HepG2EIF4A3
RHBDF1ENSG00000007384.11259.61300114.368401.182604.383103.52810HepG2EIF4B
RHBDF1ENSG00000007384.11189.61270261.21320-0.462202.220101.45610HepG2EIF4G1
RHBDF1ENSG00000007384.11648.94490356.356500.8647011.8369010.73450HepG2ETF1
RHBDF1ENSG00000007384.11658.22060370.512900.828903.075802.26840HepG2FIP1L1
RHBDF1ENSG00000007384.11370.62600118.555601.6443016.5197014.97660HepG2FXR1
RHBDF1ENSG00000007384.11480.82070109.919102.1290029.3146027.22390HepG2G3BP1
RHBDF1ENSG00000007384.11375.68080172.372701.123908.903207.05030HepG2GNB2L1
RHBDF1ENSG00000007384.11430.79990230.785700.900406.441605.49280HepG2GPKOW
RHBDF1ENSG00000007384.11423.80900111.439801.9270023.5383021.69540HepG2HNRNPK
RHBDF1ENSG00000007384.11327.12280241.201100.439502.666902.00460HepG2HNRNPL
RHBDF1ENSG00000007384.11218.17570111.709500.965604.952904.07300HepG2IGF2BP2
RHBDF1ENSG00000007384.11279.08150104.918501.411304.723503.44850HepG2IGF2BP3
RHBDF1ENSG00000007384.11209.49340112.399700.898202.187001.30770HepG2KHSRP
RHBDF1ENSG00000007384.11206.54350295.07500-0.514603.348002.22630HepG2KIF1C
RHBDF1ENSG00000007384.11193.98070118.597500.709702.758502.10470HepG2MAGOH
RHBDF1ENSG00000007384.11256.20280119.243101.103306.181505.26790HepG2MATR3
RHBDF1ENSG00000007384.11444.67450299.656800.569302.839902.02140HepG2MSI2
RHBDF1ENSG00000007384.11235.36160122.037300.947504.885704.05650HepG2NCBP2
RHBDF1ENSG00000007384.11363.74110262.557600.470202.137701.46580HepG2NOL12
RHBDF1ENSG00000007384.11519.37880306.103800.762702.271501.48200HepG2PABPC1
RHBDF1ENSG00000007384.11196.16380108.614500.852703.936003.08580HepG2PABPC4
RHBDF1ENSG00000007384.11166.47640113.504400.552502.256901.69840HepG2PCBP1
RHBDF1ENSG00000007384.11229.43690121.186800.920804.097903.13840HepG2PRPF8
RHBDF1ENSG00000007384.11347.99390115.502801.5910019.9692018.75500HepG2PTBP1
RHBDF1ENSG00000007384.11348.41280266.051000.389002.422701.86060HepG2PUM1
RHBDF1ENSG00000007384.11576.24670265.859301.115907.657706.56530HepG2PUM2
RHBDF1ENSG00000007384.11198.05460328.76130-0.731106.018605.17270HepG2PUS1
RHBDF1ENSG00000007384.11219.34630125.075600.810304.404303.64220HepG2QKI
RHBDF1ENSG00000007384.11570.08630411.206100.471203.419602.47550HepG2RBM15
RHBDF1ENSG00000007384.11802.14750297.845501.4292026.7583025.47740HepG2RBM22
RHBDF1ENSG00000007384.11263.34630113.520501.213909.519108.32430HepG2RBM25
RHBDF1ENSG00000007384.11440.26060128.537001.7761026.4537025.12970HepG2NELFE
RHBDF1ENSG00000007384.11259.99030119.726601.118608.810207.80360HepG2RECQL
RHBDF1ENSG00000007384.11323.07470173.747000.894804.629903.85620HepG2RPS19
RHBDF1ENSG00000007384.11387.24740187.829301.043708.112506.78580HepG2RPS2
RHBDF1ENSG00000007384.11286.72310191.741100.580402.277501.30780HepG2RPS5
RHBDF1ENSG00000007384.11223.27680119.871600.897203.706602.81410HepG2RRP9
RHBDF1ENSG00000007384.11668.37760274.469401.2839013.4564011.90320HepG2SF3A3
RHBDF1ENSG00000007384.11431.41940120.239201.8431028.4755026.92450HepG2SF3B4
RHBDF1ENSG00000007384.11380.93230216.084500.817808.291107.27280HepG2SMN1
RHBDF1ENSG00000007384.11290.89360165.074800.817302.563801.64300HepG2SMNDC1
RHBDF1ENSG00000007384.11426.37700242.552100.813704.205803.23490HepG2SNRNP70
RHBDF1ENSG00000007384.11702.20900336.401001.0616018.8218017.82100HepG2SRFBP1
RHBDF1ENSG00000007384.11179.42280125.509500.515501.971501.55350HepG2SRSF1
RHBDF1ENSG00000007384.11440.92740247.455900.833308.899407.86080HepG2SRSF5
RHBDF1ENSG00000007384.11312.38770102.113601.6131020.9216019.66320HepG2SRSF9
RHBDF1ENSG00000007384.11166.58660292.06770-0.810006.313805.59630HepG2SSB
RHBDF1ENSG00000007384.11423.31410281.430000.588903.534202.84750HepG2SUCLG1
RHBDF1ENSG00000007384.11458.25040156.460401.5502013.4439012.13830HepG2SUPV3L1
RHBDF1ENSG00000007384.11199.85660112.828800.824702.110001.60790HepG2TAF15
RHBDF1ENSG00000007384.11200.81020378.71930-0.915303.740502.50740HepG2TBRG4
RHBDF1ENSG00000007384.11210.88650104.856901.007904.566803.33420HepG2TFIP11
RHBDF1ENSG00000007384.11169.13330103.657300.706203.266502.36290HepG2TIA1
RHBDF1ENSG00000007384.11397.81540202.205800.976209.639508.80460HepG2TIAL1
RHBDF1ENSG00000007384.11352.18200203.961200.787907.294106.45470HepG2TRIM56
RHBDF1ENSG00000007384.11493.48930316.828900.639203.747503.01920HepG2U2AF1
RHBDF1ENSG00000007384.11676.82030205.695501.718207.049705.40070HepG2U2AF2
RHBDF1ENSG00000007384.11472.21500259.163300.865503.593002.63300HepG2UBE2L3
RHBDF1ENSG00000007384.11208.6963092.411301.175206.662905.47300HepG2UCHL5
RHBDF1ENSG00000007384.11281.26820143.213400.973704.053602.82890HepG2UPF2
RHBDF1ENSG00000007384.11178.88890250.19300-0.484002.391001.40570HepG2UTP18
RHBDF1ENSG00000007384.11140.93220235.00500-0.737703.766903.08530HepG2UTP3
RHBDF1ENSG00000007384.11307.53940169.959800.855507.350906.34250HepG2ZC3H8
RHBDF1ENSG00000007384.11354.39930267.707000.404602.620702.08450HepG2ZNF622
RHBDF1ENSG00000007384.11333.95530203.766000.712604.300702.75220K562ABCF1
RHBDF1ENSG00000007384.111353.79280544.358601.3143013.9425012.77210K562AGGF1
RHBDF1ENSG00000007384.11402.19600299.258400.426403.001001.42760K562AKAP1
RHBDF1ENSG00000007384.111003.38190598.274500.745905.926504.35380K562AKAP8
RHBDF1ENSG00000007384.111510.30270566.456101.414707.391306.28080K562AKAP8L
RHBDF1ENSG00000007384.11844.13680594.398400.505902.255701.43870K562ATP5C1
RHBDF1ENSG00000007384.11315.56010189.581200.735005.544004.16960K562BCLAF1
RHBDF1ENSG00000007384.11228.11050141.934600.684403.050901.54520K562BUD13
RHBDF1ENSG00000007384.11425.45940306.189800.474503.019101.44160K562CEBPZ
RHBDF1ENSG00000007384.11601.06850332.591400.853704.901103.43870K562CNOT7
RHBDF1ENSG00000007384.11269.06760185.779800.534302.073901.38600K562CPSF6
RHBDF1ENSG00000007384.11266.32780143.825600.888805.606504.02060K562CSTF2
RHBDF1ENSG00000007384.11556.67050351.913200.661506.736404.80610K562DDX21
RHBDF1ENSG00000007384.11425.65670148.737701.5168013.2783011.10820K562EFTUD2
RHBDF1ENSG00000007384.11387.63550285.332500.442003.002601.78440K562EIF4B
RHBDF1ENSG00000007384.11379.42960276.566600.456102.750801.46750K562EWSR1
RHBDF1ENSG00000007384.11247.94670146.477300.759304.217303.15330K562FIP1L1
RHBDF1ENSG00000007384.11129.17790329.49080-1.3509014.5382013.26350K562FXR1
RHBDF1ENSG00000007384.1137.67550109.93780-1.545002.247901.61970K562G3BP2
RHBDF1ENSG00000007384.11428.45550284.230100.592004.823303.33430K562GLRX3
RHBDF1ENSG00000007384.11270.15990177.356200.607103.018102.19000K562GPKOW
RHBDF1ENSG00000007384.11360.85350256.184200.494102.539801.81310K562GRSF1
RHBDF1ENSG00000007384.11744.14750298.004601.320206.978504.72050K562HNRNPA2B1
RHBDF1ENSG00000007384.11414.26620240.052300.787103.483102.82380K562HNRNPC
RHBDF1ENSG00000007384.11700.57110320.178601.129604.356601.65660K562HNRNPUL1
RHBDF1ENSG00000007384.111028.46560601.059500.774807.159605.68240K562KIF1C
RHBDF1ENSG00000007384.11930.33710575.436500.693003.472602.22350K562MAK16
RHBDF1ENSG00000007384.11388.93580298.834300.380102.271301.53630K562MTPAP
RHBDF1ENSG00000007384.11793.15060471.978600.748803.488102.47180K562NAA15
RHBDF1ENSG00000007384.11681.89770332.012501.0382019.8674018.12870K562NSUN2
RHBDF1ENSG00000007384.11837.92620260.473801.6856012.209709.61020K562PABPN1
RHBDF1ENSG00000007384.11272.19680162.130800.747402.309301.41960K562PCBP2
RHBDF1ENSG00000007384.11582.25710441.675200.398602.151301.41680K562PCBP3
RHBDF1ENSG00000007384.11582.66090374.544700.637404.347302.32430K562PKM
RHBDF1ENSG00000007384.11871.28430309.482001.493208.790305.76610K562PPP1R8
RHBDF1ENSG00000007384.11413.70180215.276100.942304.466503.27320K562PSIP1
RHBDF1ENSG00000007384.111106.25320561.581400.978005.466604.73530K562PUS1
RHBDF1ENSG00000007384.111502.63490547.331901.4569035.0795032.88200K562RBM15
RHBDF1ENSG00000007384.11290.41780169.711300.774905.134403.94910K562RBM22
RHBDF1ENSG00000007384.11640.48500320.428200.999103.170301.49420K562RBM39
RHBDF1ENSG00000007384.11302.42860147.345201.037302.181901.46070K562RPS19
RHBDF1ENSG00000007384.11506.53710302.982100.741303.919102.03130K562SBDS
RHBDF1ENSG00000007384.11539.96040238.097201.181204.771203.05470K562SF1
RHBDF1ENSG00000007384.11469.71590327.640300.519603.742802.80190K562SF3A3
RHBDF1ENSG00000007384.11247.08200168.736800.550102.163201.31430K562SF3B1
RHBDF1ENSG00000007384.11260.24550114.062401.190004.280503.21120K562SF3B4
RHBDF1ENSG00000007384.11373.05900239.022200.642204.121702.55860K562SLBP
RHBDF1ENSG00000007384.11522.47630311.331900.746804.339902.13630K562SMN1
RHBDF1ENSG00000007384.11780.20670273.615501.511608.826706.19760K562SNRNP200
RHBDF1ENSG00000007384.11359.91680186.372300.949405.416303.83770K562SRFBP1
RHBDF1ENSG00000007384.11537.65840335.677100.679507.723206.24590K562SRPK2
RHBDF1ENSG00000007384.11115.74610173.61990-0.585002.074601.45230K562SRSF1
RHBDF1ENSG00000007384.11297.35220164.017200.858206.037804.38360K562SRSF5
RHBDF1ENSG00000007384.11441.91150314.022600.492803.896802.49210K562SRSF7
RHBDF1ENSG00000007384.11321.96170175.776200.873005.696303.82280K562STAU1
RHBDF1ENSG00000007384.11732.98170327.166501.163703.192301.62670K562SUPT6H
RHBDF1ENSG00000007384.11340.13360139.979101.280807.455705.73380K562SUPV3L1
RHBDF1ENSG00000007384.11125.23510339.80840-1.4401015.7435013.81770K562SYNCRIP
RHBDF1ENSG00000007384.11260.77880175.674400.569802.554301.87250K562TARDBP
RHBDF1ENSG00000007384.11369.47330207.033800.835503.516402.45630K562TIAL1
RHBDF1ENSG00000007384.11298.45020166.394300.842802.377001.38080K562TRA2A
RHBDF1ENSG00000007384.11579.94880220.183801.3971010.244008.15480K562TRIM56
RHBDF1ENSG00000007384.11303.72600171.338600.825805.043603.04760K562TRIP6
RHBDF1ENSG00000007384.11293.08950148.231900.983403.070601.99300K562UCHL5
RHBDF1ENSG00000007384.11511.32240301.228200.763305.963404.65140K562WDR3
RHBDF1ENSG00000007384.11427.56720313.259500.448703.507202.56260K562WDR43
RHBDF1ENSG00000007384.11820.93640481.742800.768904.557402.89330K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RHBDF1 is not available on ENCORE database.





11 RBPs can affect the splicing of RHBDF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERHBDF1ENSG00000007384.11chr16-1100021100961097291098241102131102770.709000.000000.00014includedHepG2HNRNPK
SERHBDF1ENSG00000007384.11chr16-1100021100961097291098241102131102770.288000.000000.00004includedK562PUS1
SERHBDF1ENSG00000007384.11chr16-1100021100961097291098241102131102770.279000.000010.00069includedK562AGGF1
A3SSRHBDF1ENSG00000007384.11chr16-1097291100961097291098241102131102770.352000.000040.00638longerK562AGGF1
A3SSRHBDF1ENSG00000007384.11chr16-1135841139201135841137981146961148270.213000.000020.00338longerK562AGGF1
A3SSRHBDF1ENSG00000007384.11chr16-1097291100961097291098241102131102770.683000.000000.00002longerHepG2HNRNPK
A3SSRHBDF1ENSG00000007384.11chr16-1097291100961097291098241102131102770.395000.000000.00015longerK562AKAP8L
A3SSRHBDF1ENSG00000007384.11chr16-1135841139201135841137981146961148270.188000.000080.01075longerK562AKAP8L
A3SSRHBDF1ENSG00000007384.11chr16-109729110096109729109824110213110277-0.259000.001130.09408shorterHepG2SRSF1
A3SSRHBDF1ENSG00000007384.11chr16-1097291100961097291098241102131102770.153000.016670.08177longerK562AQR
A3SSRHBDF1ENSG00000007384.11chr16-1097291100961097291098241102131102770.381000.000000.00009longerK562PUS1
A3SSRHBDF1ENSG00000007384.11chr16-1135841139201135841137981146961148270.176000.000520.02855longerK562PUS1
A3SSRHBDF1ENSG00000007384.11chr16-1097291100961097291098241102131102770.332000.000080.01776longerK562UTP18
A3SSRHBDF1ENSG00000007384.11chr16-1097291100961097291098241102131102770.259000.000540.06076longerK562RBM15
A3SSRHBDF1ENSG00000007384.11chr16-1135841139201135841137981146961148270.158000.000320.03890longerK562RBM15
A3SSRHBDF1ENSG00000007384.11chr16-109729110096109729109824110213110277-0.287000.000160.06013shorterHepG2HNRNPC
A3SSRHBDF1ENSG00000007384.11chr16-109729110096109729109824110213110277-0.288000.000150.05085shorterHepG2TBRG4
RIRHBDF1ENSG00000007384.11chr16-108971109347108971109125109246109347-0.724000.000020.00356excludedHepG2TBRG4
RIRHBDF1ENSG00000007384.11chr16-1089711093471089711091251092461093470.463000.000070.03717includedK562EWSR1
RIRHBDF1ENSG00000007384.11chr16-108971109347108971109125109246109347-0.378000.008650.07926excludedK562UTP18

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RHBDF1 is not avaliable on ENCORE database.