DDX47

General Information

Gene Name       : DDX47
Gene ID             : ENSG00000213782.7
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: DDX47)


Antibody Validation

 View validation images for all DDX47 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878DDX47ENSG00000213782.789.3880.9885.18ENCSR000AEF
HepG2DDX47ENSG00000213782.731.0659.3845.22ENCSR985KAT
K562DDX47ENSG00000213782.741.2548.7945.02ENCSR000AEO

Assays

3 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 4050ENCSR631HUNDDX47K562ReleasedENCAB088DCVENCSR058PIY  
knockdown followed by RNA-seq DDX47-BGKLV25-K562ENCSR155EZLDDX47K562ReleasedENCSR031RRO   shRNAKD% = 88.7,97.0
knockdown followed by RNA-seq DDX47-BGHLV22-HepG2DDX47HepG2ReleasedENCSR968BBQ   shRNAKD% = 80.0,88.6






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
DDX474050K562ENCSR631HUNENCSR058PIYENCAB088DCVA302-976A1ReleasedENCODE4


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
DDX47ENCAB996IKBGTX12049740387Released, ENCODE3BGHLV22-9, Released, ENCODE3BGKLV25-13, Released, ENCODE3
DDX47ENCAB088DCVA302-976A1Released, ENCODE4BGHLV22-9, Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
DDX47K562shRNAENCSR155EZLENCSR031RRODDX47_BGKLV25-13B,DDX47_BGKLV25-14BNT_BGKLV25-1B,NT_BGKLV25-2B88.7,97.0ReleasedENCODE3
DDX47HepG2shRNAENCSR968BBQDDX47_BGHLV22-9B,DDX47_BGHLV22-10BNT_BGHLV22-1B,NT_BGHLV22-2B80.0,88.6ReleasedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
DDX47Product_ID: A302-976A
Lot_ID: 1
Source: Bethyl Labs
Target Name: DDX47-human		 DDX47-HEPG2-A302-976A.png<br>Caption: Western blot following shRNA against DDX47 in HepG2 whole cell lysate using DDX47 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNA against DDX47. DDX47 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
 Bethyl_A302-976A_1_DDX47.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the DDX47 specific antibody, A302-976A. Lane 1 is 2.5% of five million whole cell lysate input. Lanes 2 and 3 are 50% of IP enrichment from five million whole cell lysate using normal IgG antibody and the DDX47-specific antibody, A302-976A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
DDX47Product_ID: GTX120497
Lot_ID: 40387
Source: GeneTex
Target Name: DDX47-human		 DDX47_Secondary_Western.png<br>Caption: Western blot following shRNA against DDX47 in K562 and HepG2 whole cell lysate using DDX47 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against DDX47. Lanes 5-8 follow the same pattern, but in HepG2. DDX47 protein appears as the green band, GAPDH serves as a control and appears in red.
 K562_genetex_GTX120497_40387_DDX47.jpg<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using DDX47 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 10% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal Anti-DDX47 antibody (lanes under 'DDX47').
 DDX47_Secondary_Western.png<br>Caption: Western blot following shRNA against DDX47 in K562 and HepG2 whole cell lysate using DDX47 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against DDX47. Lanes 5-8 follow the same pattern, but in HepG2. DDX47 protein appears as the green band, GAPDH serves as a control and appears in red.








RNA Targets

  • eCLIP assay for DDX47 is not avaliable on ENCORE database.



Proteins bound to RNA
  • DDX47 RNA is bound by 14 proteins.  







eCLIP assay for DDX47 is not avaliable on ENCORE database.





14 proteins are bound to DDX47 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr121298241512982500+3'-UTR,CDS4.063896.29174K562ZNF622
chr121298276712982885+3'-UTR4.9627010.53917K562PUM2
chr121298235812982623+3'-UTR,CDS4.4496417.50486HepG2BCLAF1
chr121298248112982568+3'-UTR,CDS4.868206.23323K562UCHL5
chr121298236512982509+3'-UTR,CDS4.884186.85232HepG2G3BP1
chr121298267112982738+3'-UTR4.259965.01572HepG2SUB1
chr121298021912980317+3'-UTR,CDS,intron-Proximal4.439284.07072K562UCHL5
chr121297624712976355+3'-UTR,CDS,intron-Distal,intron-Proximal4.458628.91093K562PRPF8
chr121297751712977611+3'-UTR,CDS3.303564.25541HepG2GRWD1
chr121298236112982481+3'-UTR,CDS3.934099.52225K562UCHL5
chr121297624812976337+3'-UTR,CDS,intron-Proximal4.458806.74268HepG2PRPF8
chr121296634112966372+3'-UTR,CDS3.756573.14999HepG2GRWD1
chr121297623612976322+3'-UTR,CDS,intron-Proximal3.150763.08258K562TIA1
chr121297675112976868+3'-UTR,CDS,intron-Distal,intron-Proximal4.665979.84788HepG2SF3A3
chr121298237512982464+3'-UTR,CDS4.297644.16554HepG2PPIG
chr121297690712976954+3'-UTR,CDS,intron-Distal,intron-Proximal3.115536.09950HepG2BCLAF1
chr121297488112974942+3'-UTR,CDS,intron-Proximal4.174113.77802HepG2U2AF2
chr121298235312982415+3'-UTR,CDS,intron-Proximal4.775884.77252K562ZNF622
chr121298239912982475+3'-UTR,CDS3.583535.28199HepG2GRWD1
chr121298235712982479+3'-UTR,CDS3.135125.71737K562GRWD1
chr121296707012967159+3'-UTR,CDS,intron-Proximal3.226977.47194HepG2GRWD1
chr121298026312980313+3'-UTR,CDS,intron-Proximal4.144363.53690K562ZNF622
chr121297413912974159+3'-UTR,CDS,intron-Distal,intron-Proximal4.261623.45943HepG2BCLAF1
chr121296706112967140+3'-UTR,CDS,intron-Proximal3.345846.67170K562ZNF622
chr121297744712977535+3'-UTR,CDS,intron-Proximal4.740345.81672HepG2U2AF2
chr121297681712976902+3'-UTR,CDS,intron-Distal3.734403.11149HepG2G3BP1
chr121297623412976330+3'-UTR,CDS,intron-Proximal3.955363.35850HepG2TIAL1
chr121297209912972232+intron-Distal3.992844.78196HepG2PTBP1
chr121297647512976591+intron-Distal3.524169.36850HepG2U2AF2
chr121297206312972224+intron-Distal5.286388.11407K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for DDX47 is not avaliable on ENCORE database.



Diffrential Expression
  • 8,453 differentially expressed genes after Knockdown/Knockout DDX47 protein.  





  • 100 RBPs can affect the levels of DDX47.  







8,453 differentially expressed genes after Knockdown/Knockout DDX47 protein :

Only display 100 entries as example. Please click "View All" button to see all 8,453 entries.     

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GCLCENSG00000001084.62890.735701956.091000.563407.418205.40410HepG2DDX47
SEMA3FENSG00000001617.7554.94250848.84990-0.613206.050804.18230HepG2DDX47
CYP51A1ENSG00000001630.116398.626403089.284801.0504026.4530023.33690HepG2DDX47
CASP10ENSG00000003400.101150.24890874.856500.394703.168301.78860HepG2DDX47
TFPIENSG00000003436.1031623.8848019773.834000.6773012.8619010.43390HepG2DDX47
RBM5ENSG00000003756.123088.580304159.17440-0.429404.912103.21620HepG2DDX47
FKBP4ENSG00000004478.51255.654101621.18050-0.368603.090401.72500HepG2DDX47
PDK4ENSG00000004799.72.0357019.04180-3.225503.359201.93120HepG2DDX47
SLC25A13ENSG00000004864.91472.40590944.306100.640703.211801.82260HepG2DDX47
GDE1ENSG00000006007.74501.001003500.142600.362703.656902.17300HepG2DDX47
CX3CL1ENSG00000006210.62112.002302760.93290-0.386503.005001.65580HepG2DDX47
ADIPOR2ENSG00000006831.93885.393503028.286500.359503.587602.11490HepG2DDX47
MARK4ENSG00000007047.101755.668202248.81010-0.357103.268301.86400HepG2DDX47
RHBDF1ENSG00000007384.11308.70870585.14000-0.922509.933107.68910HepG2DDX47
NADKENSG00000008130.111053.387201350.97000-0.359002.861501.54780HepG2DDX47
CELSR3ENSG00000008300.101290.845001878.51820-0.541304.391102.78080HepG2DDX47
MGST1ENSG00000008394.81282.60850923.904900.473204.488102.86000HepG2DDX47
UBE3CENSG00000009335.131095.110701515.93280-0.469104.609002.96240HepG2DDX47
MLXIPLENSG00000009950.113479.518302768.420700.329703.020501.66970HepG2DDX47
SCMH1ENSG00000010803.121467.678801160.070000.339202.706801.42360HepG2DDX47
TCEB3ENSG00000011007.81501.769501164.542400.366803.074301.71210HepG2DDX47
CLCN6ENSG00000011021.173223.468302050.573100.652503.952602.42110HepG2DDX47
NME2ENSG00000011052.17102.43390230.23640-1.168406.334304.42590HepG2DDX47
TSPAN9ENSG00000011105.71687.429701212.223300.477104.948403.24350HepG2DDX47
TMEM159ENSG00000011638.6124.66980253.55900-1.024206.825804.87170HepG2DDX47
SEMA3BENSG00000012171.132513.932504292.94100-0.7720014.4069011.87720HepG2DDX47
DDX11ENSG00000013573.12449.03140647.55640-0.528204.101102.54140HepG2DDX47
NPC1L1ENSG00000015520.101438.93280755.533900.9293015.0404012.44570HepG2DDX47
SRCIN1ENSG00000017373.11996.56630585.657800.766809.365907.17200HepG2DDX47
SLC38A5ENSG00000017483.10863.915101579.49190-0.870506.977905.01090HepG2DDX47
ATP1A2ENSG00000018625.102.0949019.50100-3.218603.477502.02650HepG2DDX47
CYP24A1ENSG00000019186.5340.29230534.40760-0.651205.225003.48530HepG2DDX47
RUNX3ENSG00000020633.1492.5717028.088201.720502.596601.33930HepG2DDX47
MRE11AENSG00000020922.8334.26250513.74340-0.620104.305102.70760HepG2DDX47
CPS1ENSG00000021826.10517.63180819.37900-0.662606.678704.74030HepG2DDX47
RB1CC1ENSG00000023287.84055.478203282.514100.305002.725501.43790HepG2DDX47
ABCC2ENSG00000023839.614701.9306011495.082000.354903.906302.38460HepG2DDX47
HMGB3ENSG00000029993.10398.75270629.91010-0.659705.855704.02500HepG2DDX47
RANBP3ENSG00000031823.103940.261202932.679900.426003.237601.84040HepG2DDX47
PNPLA6ENSG00000032444.11538.73840945.06650-0.8108010.117207.86050HepG2DDX47
UHRF1ENSG00000034063.987.37520211.30680-1.274008.288106.17750HepG2DDX47
RFC1ENSG00000035928.102239.719502799.55300-0.321902.579801.32570HepG2DDX47
PI4K2BENSG00000038210.9621.64820450.962100.463003.213101.82310HepG2DDX47
VCANENSG00000038427.112649.001004443.16230-0.746109.213307.02490HepG2DDX47
CDH1ENSG00000039068.141912.044401066.057700.8427013.9921011.48590HepG2DDX47
RAI14ENSG00000039560.92011.392901435.189100.486905.318003.56550HepG2DDX47
RETSATENSG00000042445.92839.875902028.727200.485205.765703.94450HepG2DDX47
WWC3ENSG00000047644.13419.90030674.07820-0.682906.408804.49390HepG2DDX47
KITLGENSG00000049130.996.88220222.70530-1.200807.938905.86360HepG2DDX47
NFE2L3ENSG00000050344.8398.24030571.93000-0.522203.734202.23690HepG2DDX47
HERPUD1ENSG00000051108.103830.628803107.747200.301602.668701.39190HepG2DDX47
PIK3CBENSG00000051382.43564.277402447.129100.542406.310804.40670HepG2DDX47
THOC3ENSG00000051596.5261.23760504.72510-0.950109.493307.28520HepG2DDX47
PRSS8ENSG00000052344.11932.47230469.565100.9896014.1681011.65030HepG2DDX47
RRP12ENSG00000052749.9728.98690943.03330-0.371402.657001.38400HepG2DDX47
FNIP2ENSG00000052795.85188.534803851.655700.429705.062403.34120HepG2DDX47
MSMO1ENSG00000052802.85951.146102863.645701.0552026.3543023.26830HepG2DDX47
SYNE2ENSG00000054654.11853.338001339.67380-0.650707.897005.82600HepG2DDX47
USP13ENSG00000058056.42857.796902206.958500.372703.631402.15340HepG2DDX47
SEC61A1ENSG00000058262.56361.365405036.491400.336803.426601.98500HepG2DDX47
MPC1ENSG00000060762.141577.690501008.947200.644903.321701.90540HepG2DDX47
ACAA1ENSG00000060971.132522.133901850.411800.446704.880003.19030HepG2DDX47
HDAC7ENSG00000061273.13377.25210546.24240-0.534003.753902.25170HepG2DDX47
TNK2ENSG00000061938.12531.40610765.06750-0.525804.409202.79450HepG2DDX47
DGAT2ENSG00000062282.10406.65880220.345500.884007.459805.44010HepG2DDX47
POLD1ENSG00000062822.8228.27180410.23790-0.845704.970103.26070HepG2DDX47
SEZ6ENSG00000063015.1522.727903.806302.577903.212501.82280HepG2DDX47
HAGHENSG00000063854.81282.84750996.842200.363802.913201.58680HepG2DDX47
NGFRENSG00000064300.4521.22960305.094700.772606.311304.40670HepG2DDX47
CTSAENSG00000064601.124517.767203562.178800.342803.346701.92170HepG2DDX47
SUGP2ENSG00000064607.122836.091703621.24080-0.352603.471802.02180HepG2DDX47
SNX24ENSG00000064652.6543.40420370.149200.553804.055102.50190HepG2DDX47
CALCRLENSG00000064989.845.357907.607502.575806.098804.22370HepG2DDX47
MCM10ENSG00000065328.1239.4283079.90980-1.019102.845601.53630HepG2DDX47
DGKAENSG00000065357.15539.23700390.594200.465103.100701.73450HepG2DDX47
MYLKENSG00000065534.14699.06330468.621100.576904.914003.21720HepG2DDX47
TBC1D1ENSG00000065882.111365.550401805.39440-0.402803.827602.31660HepG2DDX47
PPP2R5AENSG00000066027.71707.208901278.678400.416903.894002.37560HepG2DDX47
ELAVL1ENSG00000066044.91016.901101413.02450-0.474604.682903.01850HepG2DDX47
IDI1ENSG00000067064.62444.871601212.945501.0111020.7099017.84140HepG2DDX47
NEO1ENSG00000067141.12884.033401207.92980-0.450404.005702.46250HepG2DDX47
TROENSG00000067445.16775.961601016.10110-0.389003.005501.65600HepG2DDX47
ACSL4ENSG00000068366.1537826.9282023009.747500.7171010.006707.75640HepG2DDX47
SIRT2ENSG00000068903.15648.05140476.738900.442803.026401.67360HepG2DDX47
CLEC2DENSG00000069493.10264.43920172.669700.614803.154701.77920HepG2DDX47
ATP1B3ENSG00000069849.6815.571901248.69940-0.614505.905704.06640HepG2DDX47
IKBKAPENSG00000070061.105261.894508317.72520-0.6606011.526109.17260HepG2DDX47
FSTL3ENSG00000070404.51114.899401881.68940-0.755102.730701.44140HepG2DDX47
ZXDCENSG00000070476.101119.55350864.394200.373102.829901.52240HepG2DDX47
WIPI1ENSG00000070540.81657.148701203.296800.461604.621002.97230HepG2DDX47
GBA2ENSG00000070610.102351.803601841.197100.353003.177101.79390HepG2DDX47
TESK2ENSG00000070759.12104.33290341.58400-1.7110018.8792016.07190HepG2DDX47
SLC12A3ENSG00000070915.574.92400217.47040-1.5373011.492009.14240HepG2DDX47
LMCD1ENSG00000071282.7162.95270255.48770-0.648803.297101.88650HepG2DDX47
RDH11ENSG00000072042.84550.752702479.505800.8760018.1961015.41740HepG2DDX47
TFRCENSG00000072274.814151.0537011488.053500.300702.911401.58560HepG2DDX47
RHOBTB1ENSG00000072422.12899.030701439.34500-0.679003.734402.23690HepG2DDX47
NFATC3ENSG00000072736.143814.545403033.337500.330503.128501.75890HepG2DDX47
NDE1ENSG00000072864.85074.588203365.320200.592403.042701.68680HepG2DDX47
MRVI1ENSG00000072952.1435.258904.283403.041105.874504.04140HepG2DDX47
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





100 RBPs can affect the gene expression of DDX47 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
DDX47ENSG00000213782.31299.66590997.170900.382105.449004.65190HepG2ACO1
DDX47ENSG00000213782.3781.278401020.32580-0.385102.738701.74530HepG2ADAR
DDX47ENSG00000213782.3865.282001274.25870-0.558404.677503.66980HepG2ASCC1
DDX47ENSG00000213782.3611.24230883.25390-0.531103.400402.40720HepG2BCLAF1
DDX47ENSG00000213782.3449.37930667.27140-0.570304.385103.53680HepG2CPSF6
DDX47ENSG00000213782.3967.452801488.60090-0.6217011.4179010.28730HepG2CELF1
DDX47ENSG00000213782.31320.558601600.62890-0.277503.812602.96600HepG2DAZAP1
DDX47ENSG00000213782.3771.86560946.58740-0.294401.917401.34070HepG2DDX21
DDX47ENSG00000213782.3962.294201475.29640-0.616504.956104.13910HepG2DDX3X
DDX47ENSG00000213782.3285.07220997.17140-1.8065040.2478036.55970HepG2DDX47
DDX47ENSG00000213782.3687.973301027.40630-0.578608.080506.92960HepG2DNAJC21
DDX47ENSG00000213782.3799.367001018.36230-0.349304.438003.64620HepG2DNAJC2
DDX47ENSG00000213782.3697.22670901.85030-0.371302.196501.37360HepG2EEF2
DDX47ENSG00000213782.3910.650501218.30380-0.419902.473001.91070HepG2EIF2S1
DDX47ENSG00000213782.31123.250001579.10360-0.491408.149006.85310HepG2EIF4G1
DDX47ENSG00000213782.31171.725101512.68290-0.368502.975202.13240HepG2EIF4G2
DDX47ENSG00000213782.31487.521301906.50660-0.358004.982004.21750HepG2ETF1
DDX47ENSG00000213782.3879.886401260.10920-0.518203.743302.97320HepG2G3BP1
DDX47ENSG00000213782.3795.580501037.24940-0.382703.126102.44540HepG2HNRNPA1
DDX47ENSG00000213782.3765.106201153.75760-0.592606.290505.27830HepG2HNRNPC
DDX47ENSG00000213782.3868.951601045.17640-0.266402.324401.66290HepG2HNRNPF
DDX47ENSG00000213782.3744.832501146.12900-0.6218011.1839010.03370HepG2HNRNPU
DDX47ENSG00000213782.3839.634201029.20220-0.293702.158101.51350HepG2IGF2BP1
DDX47ENSG00000213782.3727.085001280.94150-0.817007.662206.59490HepG2IGF2BP2
DDX47ENSG00000213782.3919.378001170.73120-0.348705.061504.09550HepG2ILF2
DDX47ENSG00000213782.3791.636001129.38160-0.512602.966901.58880HepG2ILF3
DDX47ENSG00000213782.3738.536201103.70150-0.579604.283002.74460HepG2KHDRBS1
DDX47ENSG00000213782.3920.409501288.28110-0.485102.798401.79050HepG2KHSRP
DDX47ENSG00000213782.3966.070801358.66000-0.492003.964103.17970HepG2MAGOH
DDX47ENSG00000213782.31034.013201398.55600-0.435703.147202.47400HepG2NCBP2
DDX47ENSG00000213782.3752.735101058.81520-0.492202.253901.46710HepG2PABPC1
DDX47ENSG00000213782.3904.423301245.72620-0.461903.239702.46070HepG2PABPC4
DDX47ENSG00000213782.3791.196401022.25380-0.369603.752502.90610HepG2PPIL4
DDX47ENSG00000213782.3978.463301413.15670-0.530309.055208.18020HepG2PTBP1
DDX47ENSG00000213782.31176.775101515.09670-0.364603.318702.67450HepG2PUF60
DDX47ENSG00000213782.31270.038001608.33630-0.340705.580704.79960HepG2PUM1
DDX47ENSG00000213782.3792.945501015.69890-0.357204.206003.47420HepG2PUS1
DDX47ENSG00000213782.3845.401001530.47160-0.8563017.6052016.22550HepG2QKI
DDX47ENSG00000213782.3577.037101024.83040-0.828605.172204.22470HepG2RAVER1
DDX47ENSG00000213782.31376.368901593.47160-0.211301.866301.41920HepG2RBM22
DDX47ENSG00000213782.31001.994101389.00590-0.471205.143004.24990HepG2RBM25
DDX47ENSG00000213782.31074.990501572.70310-0.548909.635008.73590HepG2NELFE
DDX47ENSG00000213782.31158.521201464.76770-0.338404.177203.44070HepG2RECQL
DDX47ENSG00000213782.3727.899601006.58330-0.467702.414601.53120HepG2RPS10
DDX47ENSG00000213782.3530.99070712.36960-0.423902.648902.04610HepG2RPS19
DDX47ENSG00000213782.3803.781901120.36600-0.479103.292802.41940HepG2RPS2
DDX47ENSG00000213782.3787.173501163.13190-0.563303.796402.85870HepG2RPS3A
DDX47ENSG00000213782.3869.848101020.67300-0.230702.060901.49170HepG2SAFB2
DDX47ENSG00000213782.31625.683501014.602200.680005.733304.74090HepG2SF3A3
DDX47ENSG00000213782.31088.757801471.26850-0.434406.306205.47470HepG2SF3B4
DDX47ENSG00000213782.31193.032201452.72980-0.284103.655302.86760HepG2SLBP
DDX47ENSG00000213782.3845.548901190.26780-0.493308.805707.76060HepG2SMN1
DDX47ENSG00000213782.32205.542801799.740800.293204.125603.54970HepG2SRFBP1
DDX47ENSG00000213782.31236.919701495.93040-0.274303.039302.38660HepG2SRSF5
DDX47ENSG00000213782.3808.750601026.84500-0.344503.627702.84740HepG2SRSF7
DDX47ENSG00000213782.3855.251201249.36910-0.546809.648008.72530HepG2SRSF9
DDX47ENSG00000213782.31348.850301562.55440-0.212202.200601.73050HepG2SSB
DDX47ENSG00000213782.3735.79040994.84080-0.435202.232401.61620HepG2SUPV3L1
DDX47ENSG00000213782.3657.060701113.64310-0.7612012.1831011.26320HepG2TIAL1
DDX47ENSG00000213782.3699.957701123.63620-0.6828012.9885011.89330HepG2TRIM56
DDX47ENSG00000213782.31078.296101480.17590-0.457005.014703.80200HepG2TUFM
DDX47ENSG00000213782.31164.22610907.662200.359002.508601.90860HepG2U2AF1
DDX47ENSG00000213782.3940.258901566.73680-0.736607.842706.40370HepG2UBE2L3
DDX47ENSG00000213782.3678.64800899.80130-0.406903.501402.73020HepG2UPF1
DDX47ENSG00000213782.31056.62480868.716300.282402.639502.05410HepG2UTP3
DDX47ENSG00000213782.3708.69640872.41460-0.299802.882502.19930HepG2ZC3H8
DDX47ENSG00000213782.31158.77000676.323000.7767015.7890014.54800K562AGGF1
DDX47ENSG00000213782.31198.88730703.753600.7685010.824309.41610K562AKAP8L
DDX47ENSG00000213782.3928.51510738.423800.330403.091702.12330K562ATP5C1
DDX47ENSG00000213782.3791.39630948.98660-0.262002.325601.44680K562BCLAF1
DDX47ENSG00000213782.3525.41980703.30620-0.420702.664501.80900K562BOP1
DDX47ENSG00000213782.3318.59640443.68060-0.477802.816601.75030K562CCAR1
DDX47ENSG00000213782.3491.23600747.83190-0.606306.003504.85280K562CPSF6
DDX47ENSG00000213782.3555.84060719.94790-0.373202.784501.72400K562CSTF2
DDX47ENSG00000213782.31860.872902235.65210-0.264702.238601.36150K562CELF1
DDX47ENSG00000213782.3217.709201296.10910-2.57370118.01210114.45460K562DDX47
DDX47ENSG00000213782.31085.46240757.233300.519407.331505.79060K562DKC1
DDX47ENSG00000213782.3863.997101320.12330-0.611607.876906.75660K562EIF2S2
DDX47ENSG00000213782.31005.36230696.354500.529706.650405.43030K562EIF3G
DDX47ENSG00000213782.3567.84280760.87100-0.422202.922702.04280K562FMR1
DDX47ENSG00000213782.3454.32920644.89370-0.505303.358502.34370K562FTO
DDX47ENSG00000213782.31024.62000676.205900.599508.585907.59090K562FXR1
DDX47ENSG00000213782.31423.561301759.33260-0.305502.466101.75050K562GRSF1
DDX47ENSG00000213782.3454.17640831.59820-0.8726011.1902010.05800K562HNRNPC
DDX47ENSG00000213782.31251.72640887.752300.495602.882701.62320K562HNRNPK
DDX47ENSG00000213782.31071.59120746.827200.520802.427801.66080K562KIF1C
DDX47ENSG00000213782.3418.69260609.64100-0.542102.956701.98740K562KRR1
DDX47ENSG00000213782.31048.20880836.639500.325102.741401.83780K562MBNL1
DDX47ENSG00000213782.3999.62840586.426400.769302.450601.63200K562NAA15
DDX47ENSG00000213782.3854.423201005.95940-0.235502.329701.63900K562NSUN2
DDX47ENSG00000213782.3690.86100943.72550-0.450003.170902.27970K562PCBP3
DDX47ENSG00000213782.3553.35610723.87260-0.387502.730601.93540K562POLR2G
DDX47ENSG00000213782.31396.53700765.283300.8677012.2786010.69240K562PRPF8
DDX47ENSG00000213782.31172.27150907.517400.369203.395302.66850K562PTBP1
DDX47ENSG00000213782.31394.08470697.866700.9982016.1820014.91000K562PUS1
DDX47ENSG00000213782.31046.61390680.018800.622008.354307.35030K562RBM15
DDX47ENSG00000213782.3447.84280680.10770-0.602805.626704.20590K562RCC2
DDX47ENSG00000213782.31031.30160779.629200.403502.731701.92150K562RPS19
DDX47ENSG00000213782.31076.42620831.614600.372203.500702.53500K562SF3B4
DDX47ENSG00000213782.3857.054401016.94800-0.246802.296401.43530K562SRPK2
DDX47ENSG00000213782.31100.30330889.647300.306502.348101.68920K562SRSF1
DDX47ENSG00000213782.3447.40160680.07990-0.604105.284603.74520K562SRSF4
DDX47ENSG00000213782.31070.63900726.058900.560206.838605.53680K562SYNCRIP
DDX47ENSG00000213782.3705.06100900.42910-0.352902.313401.66350K562TARDBP
DDX47ENSG00000213782.3652.70920868.55290-0.412203.499202.56310K562TIA1
DDX47ENSG00000213782.3491.35780717.14570-0.545503.851202.73820K562TIAL1
DDX47ENSG00000213782.3590.16460761.71570-0.368102.463401.58010K562TRIM56
DDX47ENSG00000213782.3984.928701241.51050-0.334004.109202.55900K562TROVE2
DDX47ENSG00000213782.31180.63300775.184300.606805.253303.64730K562U2AF1
DDX47ENSG00000213782.31242.06820800.687600.633309.116507.65130K562U2AF2
DDX47ENSG00000213782.3550.03890784.31630-0.511903.654602.47060K562UCHL5
DDX47ENSG00000213782.3803.381701066.63920-0.408905.054604.11480K562UPF1
DDX47ENSG00000213782.31138.65160949.083000.262602.712001.87370K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for DDX47 is not available on ENCORE database.





18 RBPs can affect the splicing of DDX47 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEDDX47ENSG00000213782.3chr12+129801791298029612978858129790041298235612982913-0.053000.012230.09525excludedK562AQR
A3SSDDX47ENSG00000213782.3chr12+1297455512974660129745881297466012974141129743300.151000.000000.00000longerK562AQR
A3SSDDX47ENSG00000213782.3chr12+1298015512980309129801791298030912978933129790040.091000.000000.00000longerK562AQR
A5SSDDX47ENSG00000213782.3chr12+1297613612976334129761361297625312976803129769500.130000.000000.00009longerK562PUS1
A5SSDDX47ENSG00000213782.3chr12+1297610112976334129761011297625312976803129769500.113000.000070.00183longerK562AQR
A5SSDDX47ENSG00000213782.3chr12+1296627912966450129662791296638812967064129671580.110000.000000.00000longerK562AQR
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.233000.000000.00000includedK562PUS1
RIDDX47ENSG00000213782.3chr12+129761361297695012976136129762531297680312976950-0.107000.004100.04662excludedHepG2PRPF8
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.056000.000290.01621includedK562HNRNPUL1
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.189000.000000.00001includedK562AGGF1
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.144000.000000.00000includedHepG2FTO
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.231000.000000.00000includedHepG2QKI
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.119000.000090.00144includedK562AKAP8L
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.186000.000000.00001includedHepG2TAF15
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.098000.001330.01626includedK562RBM15
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.144000.000010.00039includedK562U2AF1
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.086000.002450.03371includedK562U2AF2
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.116000.000360.00400includedHepG2SF3B4
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.124000.000370.00596includedHepG2HNRNPK
RIDDX47ENSG00000213782.3chr12+1297613612977611129761361297695012977473129776110.139000.002360.02914includedK562UTP18
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.112000.000200.00385includedK562UTP18
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.062000.000010.00599includedK562ABCF1
RIDDX47ENSG00000213782.3chr12+1297613612977611129761361297695012977473129776110.075000.000100.00085includedK562AQR
RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.157000.000000.00002includedK562AQR
RIDDX47ENSG00000213782.3chr12+129761361297695012976136129762531297680312976950-0.124000.000010.00022excludedK562FXR1
MXEDDX47ENSG00000213782.3chr12+12974084129743301297455512974660129670641296715812974898129750170.051000.015880.091631includedK562AQR
MXEDDX47ENSG00000213782.3chr12+12976136129762531297680312976950129755941297566612977473129776110.058000.001090.036991includedK562DDX55
MXEDDX47ENSG00000213782.3chr12+1297613612976253129768031297695012975594129756661297747312977611-0.126000.004210.066142includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for DDX47 is not avaliable on ENCORE database.