RETSAT

General Information

Gene Name       : RETSAT
Gene ID             : ENSG00000042445.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RETSAT)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RETSATENSG00000042445.1312.8819.5716.23ENCSR000AEF
HepG2RETSATENSG00000042445.1332.2429.5030.87ENCSR985KAT
K562RETSATENSG00000042445.1313.5314.5214.02ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RETSAT is not avaliable on ENCORE database.



Proteins bound to RNA
  • RETSAT RNA is bound by 18 proteins.  







eCLIP assay for RETSAT is not avaliable on ENCORE database.





18 proteins are bound to RETSAT RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr28556954985569609-3'-UTR,intron-Distal3.494325.98135HepG2UPF1
chr28556963185569698-3'-UTR,intron-Distal3.897795.09017HepG2UPF1
chr28557141385571509-3'-UTR,CDS,intron-Distal,intron-Proximal4.092934.98250K562AQR
chr28556930885569394-3'-UTR,intron-Distal3.780404.25147HepG2LSM11
chr28557131185571391-3'-UTR,CDS,intron-Distal,intron-Proximal3.1441713.55182HepG2PRPF8
chr28557016985570221-3'-UTR,intron-Distal,intron-Proximal4.580754.78313HepG2UPF1
chr28557136285571401-3'-UTR,CDS,intron-Distal,intron-Proximal3.035263.50639HepG2PPIG
chr28556933185569393-3'-UTR,intron-Distal4.368347.59881HepG2UPF1
chr28556945685569538-3'-UTR,intron-Distal4.3362812.90774HepG2UPF1
chr28556927185569430-3'-UTR,intron-Distal5.0309413.57407HepG2LARP4
chr28557166685571730-3'-UTR,CDS,intron-Distal,intron-Proximal3.194158.75624HepG2PRPF8
chr28557016685570262-3'-UTR,intron-Distal,intron-Proximal3.170026.83494HepG2PABPN1
chr28557050085570516-3'-UTR,CDS,intron-Distal4.701345.47569HepG2U2AF2
chr28557255385572665-3'-UTR,intron-Distal,intron-Proximal3.580566.80032HepG2RBFOX2
chr28556939385569456-3'-UTR,intron-Distal5.7092612.73103HepG2UPF1
chr28558157385581650-5'-UTR,CDS,intron-Distal,intron-Proximal4.7063327.38685HepG2DDX3X
chr28557642785576524-CDS,intron-Distal,intron-Proximal4.600303.59236HepG2AQR
chr28557804185578104-CDS,intron-Distal,intron-Proximal3.820207.11560HepG2GRWD1
chr28557305785573123-CDS,intron-Distal,intron-Proximal3.788998.78144HepG2PRPF8
chr28557803785578125-CDS,intron-Distal,intron-Proximal4.0641410.65228HepG2SND1
chr28557317185573210-CDS,intron-Distal4.635254.06516HepG2SND1
chr28557796285578041-CDS,intron-Distal,intron-Proximal4.822807.25648HepG2GRWD1
chr28557799585578101-CDS,intron-Distal,intron-Proximal3.188484.30739HepG2SRSF1
chr28558157485581615-CDS,intron-Distal4.700329.72581HepG2RPS3
chr28557719485577246-CDS,intron-Distal3.957616.19394HepG2RPS3
chr28557311385573203-CDS,intron-Distal3.614895.58683HepG2GRWD1
chr28557712585577183-CDS,intron-Distal,intron-Proximal3.1014213.15429HepG2PRPF8
chr28557669285576771-CDS,intron-Distal,intron-Proximal4.240753.31322HepG2SF3B4
chr28557810685578160-CDS,intron-Distal,intron-Proximal3.701343.62357HepG2U2AF2
chr28557804085578129-CDS,intron-Distal,intron-Proximal4.482203.02572K562SND1
chr28557887085578942-CDS,intron-Distal3.283825.40132HepG2BCLAF1
chr28557654285576624-CDS,intron-Distal,intron-Proximal3.494218.24547HepG2SND1
chr28557309685573124-CDS,intron-Distal,intron-Proximal4.919394.06516HepG2SND1
chr28557315785573218-CDS,intron-Distal,intron-Proximal3.2322210.03769HepG2PPIG
chr28557883085578969-CDS,intron-Distal4.2018414.06184HepG2SND1
chr28557651785576543-CDS,intron-Distal,intron-Proximal3.110917.61685HepG2PPIG
chr28557119485571255-CDS,intron-Distal5.8206711.22354HepG2SND1
chr28557126885571283-CDS,intron-Distal,intron-Proximal4.674573.48040HepG2SND1
chr28557641885576472-intron-Distal,intron-Proximal3.061743.97082HepG2PRPF8
chr28557186085571979-intron-Distal,intron-Proximal4.097528.03271HepG2SF3A3
chr28557243685572521-intron-Distal3.009234.88853HepG2PRPF4
chr28558141485581459-intron-Distal4.549099.76577HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RETSAT is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RETSAT is not available on ENCORE database.

  • 120 RBPs can affect the levels of RETSAT.  








The Knockdown/knockout RNA-Seq assay for RETSAT is not available on ENCORE database.





120 RBPs can affect the gene expression of RETSAT :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RETSATENSG00000042445.91062.527201425.61610-0.424103.902102.64530HepG2AATF
RETSATENSG00000042445.91298.942702053.54900-0.6608018.4111017.13950HepG2ACO1
RETSATENSG00000042445.92264.161804132.78680-0.8681011.6951010.67510HepG2AKAP1
RETSATENSG00000042445.93040.755202062.985000.5596014.0042012.46140HepG2AKAP8L
RETSATENSG00000042445.92268.417603419.50590-0.592106.909505.69430HepG2ASCC1
RETSATENSG00000042445.93333.106202755.343900.274504.232303.41520HepG2AUH
RETSATENSG00000042445.92199.557901316.184100.740808.688307.20790HepG2BCLAF1
RETSATENSG00000042445.92751.311801109.815301.3097034.5108032.81610HepG2BOP1
RETSATENSG00000042445.91934.332701251.783700.6278010.357009.00780HepG2CALR
RETSATENSG00000042445.92292.825003248.77510-0.502805.351504.29370HepG2CIRBP
RETSATENSG00000042445.91475.442502052.91920-0.476502.549001.81640HepG2CNOT7
RETSATENSG00000042445.91589.919501018.866800.641907.575306.48350HepG2CPSF6
RETSATENSG00000042445.92202.966101719.333600.357503.292202.08510HepG2CPSF7
RETSATENSG00000042445.92925.769502034.360800.5241011.5804010.44090HepG2CELF1
RETSATENSG00000042445.91665.121601899.12130-0.189702.149101.40710HepG2DDX19B
RETSATENSG00000042445.92529.240601572.495100.6855010.823209.58180HepG2DDX21
RETSATENSG00000042445.91907.861301539.132300.309702.929001.98600HepG2DDX24
RETSATENSG00000042445.92839.875902028.727200.485205.765703.94450HepG2DDX47
RETSATENSG00000042445.91822.032001156.999400.655103.775402.64000HepG2DDX59
RETSATENSG00000042445.92282.930901646.326300.471502.763601.75310HepG2DDX5
RETSATENSG00000042445.92612.480803400.86500-0.380502.719302.10710HepG2DDX6
RETSATENSG00000042445.92281.966201237.168400.8831016.8570014.78910HepG2DHX30
RETSATENSG00000042445.91735.698901282.723500.436206.391405.35970HepG2DNAJC21
RETSATENSG00000042445.91785.406301271.322100.489808.213007.16380HepG2DNAJC2
RETSATENSG00000042445.93998.710103269.192600.290502.019401.50360HepG2EIF2S1
RETSATENSG00000042445.91996.499403517.67280-0.817108.341207.17910HepG2EIF4B
RETSATENSG00000042445.93168.910602158.021400.5542014.3945012.78230HepG2EIF4G1
RETSATENSG00000042445.92489.655702067.222000.268202.057101.34660HepG2EIF4G2
RETSATENSG00000042445.92602.735503163.36990-0.281404.127803.41870HepG2ETF1
RETSATENSG00000042445.91679.588202108.57710-0.328202.304801.59880HepG2FIP1L1
RETSATENSG00000042445.91665.938901239.647000.426303.067701.73350HepG2FKBP4
RETSATENSG00000042445.91492.103902278.96540-0.611009.194507.80590HepG2FUBP3
RETSATENSG00000042445.92172.786403645.34430-0.7465010.603009.33320HepG2FXR1
RETSATENSG00000042445.92366.395903381.48240-0.515004.920904.04440HepG2G3BP1
RETSATENSG00000042445.91705.649001154.953500.562405.093204.24160HepG2GPKOW
RETSATENSG00000042445.92330.064301584.611900.556103.082701.61920HepG2HLTF
RETSATENSG00000042445.91640.404201295.011500.341002.920802.25790HepG2HNRNPA1
RETSATENSG00000042445.92620.297901663.165500.6557017.5313015.92470HepG2HNRNPF
RETSATENSG00000042445.92387.372303424.31160-0.520406.382505.35240HepG2HNRNPK
RETSATENSG00000042445.91630.792701992.39630-0.288904.437903.59960HepG2HNRNPL
RETSATENSG00000042445.92682.955001102.194501.2833028.5707026.89870HepG2HNRNPLL
RETSATENSG00000042445.91202.311901454.58950-0.274802.307701.43890HepG2HNRNPM
RETSATENSG00000042445.93226.744101637.742900.9783026.7626024.80020HepG2IGF2BP1
RETSATENSG00000042445.91256.160801461.63620-0.218602.570001.86110HepG2ILF2
RETSATENSG00000042445.92830.344101877.042600.5924019.9077017.51110HepG2KIF1C
RETSATENSG00000042445.91231.899801534.87450-0.317202.446301.38430HepG2LARP7
RETSATENSG00000042445.91688.991801124.119900.587303.819102.66840HepG2MTPAP
RETSATENSG00000042445.92976.258503753.34470-0.334702.420201.82530HepG2NCBP2
RETSATENSG00000042445.91775.969602168.91020-0.288402.914402.13190HepG2NOL12
RETSATENSG00000042445.91411.09400977.314400.529805.330704.30760HepG2NSUN2
RETSATENSG00000042445.93017.145801876.639000.684904.387403.25460HepG2PABPC1
RETSATENSG00000042445.94511.655203342.472500.432603.970303.11590HepG2PABPC4
RETSATENSG00000042445.91136.861801416.39150-0.317203.741502.77430HepG2PARN
RETSATENSG00000042445.92420.115703528.68260-0.5441014.6571013.44060HepG2PCBP1
RETSATENSG00000042445.92190.335803590.53970-0.7130023.3749022.07900HepG2PTBP1
RETSATENSG00000042445.93246.637002070.458300.6489011.2672010.17400HepG2PUF60
RETSATENSG00000042445.9998.753702197.93410-1.1379054.9247052.98570HepG2PUM1
RETSATENSG00000042445.94100.160102196.296800.9005020.9585019.22080HepG2PUM2
RETSATENSG00000042445.93125.916502091.635500.5795017.5566016.24250HepG2PUS1
RETSATENSG00000042445.93242.573903888.70020-0.262103.105702.45090HepG2QKI
RETSATENSG00000042445.9870.873101509.37090-0.793405.173804.22560HepG2RAVER1
RETSATENSG00000042445.92608.353303995.94820-0.6154018.6261017.46390HepG2NELFE
RETSATENSG00000042445.92253.478203721.64230-0.7238025.1377023.60760HepG2RECQL
RETSATENSG00000042445.95083.558301791.642001.5045049.9638047.94420HepG2RPLP0
RETSATENSG00000042445.92568.806901483.002700.792506.731305.30540HepG2RPS10
RETSATENSG00000042445.91965.121201050.323100.9037018.0754016.70750HepG2RPS19
RETSATENSG00000042445.92423.769201706.944400.505705.533304.42540HepG2RPS2
RETSATENSG00000042445.93117.943702062.271600.596304.857903.79630HepG2RPS3A
RETSATENSG00000042445.91751.208801274.307400.458503.947303.20080HepG2SAFB2
RETSATENSG00000042445.91477.957601054.111900.487504.617303.41880HepG2SERBP1
RETSATENSG00000042445.91284.861502342.91180-0.866708.882207.62130HepG2SF3A3
RETSATENSG00000042445.91919.953303738.26330-0.9613041.6365039.86050HepG2SF3B4
RETSATENSG00000042445.92434.417101985.351800.294105.412504.48650HepG2SLBP
RETSATENSG00000042445.91985.946301213.873600.710105.337204.24090HepG2SNRNP70
RETSATENSG00000042445.91654.924702986.37220-0.8516023.5963022.50700HepG2SRFBP1
RETSATENSG00000042445.92805.216403901.91790-0.4761012.9271012.06800HepG2SRSF1
RETSATENSG00000042445.9544.991901173.88270-1.1070012.5549010.33190HepG2SRSF3
RETSATENSG00000042445.92669.414502044.337300.384807.345406.39230HepG2SRSF5
RETSATENSG00000042445.93108.308301634.006400.9276035.8412033.91260HepG2SRSF7
RETSATENSG00000042445.92176.062803174.40120-0.5448015.1854014.07810HepG2SRSF9
RETSATENSG00000042445.93390.124202592.964200.386606.635705.90600HepG2SSB
RETSATENSG00000042445.92538.119501408.043100.850009.374507.28610HepG2STAU1
RETSATENSG00000042445.92971.016601482.605901.0027015.1660013.80470HepG2SUPV3L1
RETSATENSG00000042445.92238.329703507.14160-0.6479016.2974015.10150HepG2TAF15
RETSATENSG00000042445.91724.961801074.328400.683009.018507.81560HepG2TARDBP
RETSATENSG00000042445.94230.309002843.326800.573102.439601.43480HepG2TBRG4
RETSATENSG00000042445.91462.54100993.719400.557503.932802.76870HepG2TFIP11
RETSATENSG00000042445.92675.659703222.64300-0.268302.718901.88940HepG2TIA1
RETSATENSG00000042445.93007.096801390.493701.1127035.5877034.16410HepG2TIAL1
RETSATENSG00000042445.91015.480901402.82410-0.466207.245106.40810HepG2TRIM56
RETSATENSG00000042445.93070.822002022.833600.6021010.542608.64290HepG2TUFM
RETSATENSG00000042445.91203.220301803.53520-0.583906.701905.73610HepG2U2AF1
RETSATENSG00000042445.93084.219002141.192500.526404.816203.69460HepG2UBE2L3
RETSATENSG00000042445.9642.84770875.79920-0.446103.238102.41810HepG2UCHL5
RETSATENSG00000042445.93080.498602077.807000.5680016.4405015.01700HepG2UPF1
RETSATENSG00000042445.91699.144402006.03730-0.239502.770902.17380HepG2UTP3
RETSATENSG00000042445.92514.810101847.227900.445002.805401.69910HepG2XPO5
RETSATENSG00000042445.92048.034801476.276500.4722010.683509.50720HepG2ZC3H8
RETSATENSG00000042445.93893.838302285.186500.7688038.8184037.38940HepG2ZNF622
RETSATENSG00000042445.9273.98540436.99810-0.673504.924503.29230K562AARS
RETSATENSG00000042445.9651.28310914.97860-0.490504.631702.95910K562APOBEC3C
RETSATENSG00000042445.9407.02110284.751600.515302.772701.89760K562BOP1
RETSATENSG00000042445.9434.85250302.760700.522203.440002.56310K562CPSF6
RETSATENSG00000042445.9859.511801275.28770-0.569207.901206.28560K562CELF1
RETSATENSG00000042445.9808.17040565.037200.516205.004503.54440K562DDX3X
RETSATENSG00000042445.9491.41880699.08300-0.508503.907103.15170K562DDX47
RETSATENSG00000042445.9735.43740515.045700.513805.328904.37810K562EIF2S2
RETSATENSG00000042445.9187.67960333.96900-0.831403.679302.50270K562EIF3A
RETSATENSG00000042445.9327.39180458.50320-0.485902.714101.68960K562EIF3D
RETSATENSG00000042445.9678.292201036.98300-0.612409.444107.74710K562EIF4G2
RETSATENSG00000042445.9501.20130308.075100.702005.421204.21650K562FMR1
RETSATENSG00000042445.9390.72620613.93140-0.651907.012906.11070K562FXR1
RETSATENSG00000042445.9587.69110755.38080-0.362102.703201.64340K562HNRNPA1
RETSATENSG00000042445.9234.66500478.08390-1.0267010.529709.42600K562HNRNPC
RETSATENSG00000042445.9543.95540836.52900-0.620907.906206.40300K562HNRNPU
RETSATENSG00000042445.9695.52580534.149200.380802.470401.71470K562HSPD1
RETSATENSG00000042445.9454.48300675.40810-0.571505.315304.13910K562MAGOH
RETSATENSG00000042445.9480.03720673.97950-0.489604.218903.05980K562MATR3
RETSATENSG00000042445.9393.72240282.151400.480602.596301.75200K562METAP2
RETSATENSG00000042445.9823.54860589.468700.482304.644403.04510K562NCBP2
RETSATENSG00000042445.9870.94800564.756200.624902.618801.66240K562PABPN1
RETSATENSG00000042445.9346.45050600.87580-0.794407.795506.12590K562PCBP2
RETSATENSG00000042445.9231.98270416.85160-0.845506.495105.34430K562PRPF8
RETSATENSG00000042445.9572.49760428.662100.417302.621501.74520K562PSIP1
RETSATENSG00000042445.9502.80660656.23000-0.384202.862602.18870K562PTBP1
RETSATENSG00000042445.9886.708101131.39520-0.351602.748701.93550K562PUF60
RETSATENSG00000042445.9766.895801203.63930-0.650309.528807.47940K562PUM1
RETSATENSG00000042445.91424.133601179.100600.272302.211501.35130K562PUM2
RETSATENSG00000042445.91498.65910947.571300.661308.171207.28680K562PUS1
RETSATENSG00000042445.9233.72840424.50480-0.860905.874604.67950K562RPS19
RETSATENSG00000042445.9346.71290556.95220-0.683804.894703.51690K562RPS3
RETSATENSG00000042445.9279.30990426.09880-0.609303.214801.78330K562RRP9
RETSATENSG00000042445.9215.70570356.61400-0.725303.621501.81620K562SERBP1
RETSATENSG00000042445.9349.88630496.18990-0.504004.024602.98480K562SF3B4
RETSATENSG00000042445.9471.92210614.68470-0.381303.286002.27560K562SRPK2
RETSATENSG00000042445.9345.41580651.03670-0.9144010.114708.62860K562TARDBP
RETSATENSG00000042445.9882.52560644.686600.452905.395204.42750K562UPF1
RETSATENSG00000042445.9372.87280573.64980-0.621507.276805.96610K562WDR43
RETSATENSG00000042445.91034.36350604.391400.775103.613901.61050K562XPO5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RETSAT is not available on ENCORE database.





13 RBPs can affect the splicing of RETSAT :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERETSATENSG00000042445.9chr2-855711218557128885570761855709218557136185571471-0.316000.002920.08200excludedK562PRPF8
SERETSATENSG00000042445.9chr2-855771628557736485576506855767048557790285578144-0.397000.000060.00417excludedK562PRPF8
SERETSATENSG00000042445.9chr2-8557716285577364855765068557670485577902855780140.079000.000360.09247includedHepG2BCLAF1
SERETSATENSG00000042445.9chr2-855771628557736485576506855767048557790285578014-0.392000.000100.00872excludedK562EFTUD2
SERETSATENSG00000042445.9chr2-855771628557736485576506855767048557790285578014-0.140000.000050.00267excludedHepG2SF3A3
SERETSATENSG00000042445.9chr2-855711218557128885570761855709218557136185571471-0.139000.000020.00315excludedHepG2IGF2BP3
SERETSATENSG00000042445.9chr2-855771628557736485576506855767048557790285578014-0.086000.001840.09850excludedHepG2IGF2BP3
SERETSATENSG00000042445.9chr2-855771628557736485576506855767048557790285578014-0.080000.000100.00697excludedHepG2SF3B4
SERETSATENSG00000042445.9chr2-855711218557128885570761855709218557136185571471-0.256000.001940.06615excludedK562PTBP1
SERETSATENSG00000042445.9chr2-855771628557736485576506855767048557790285578014-0.208000.006030.08054excludedK562HNRNPC
A3SSRETSATENSG00000042445.9chr2-8557309785573254855730978557321785576506855767040.128000.016920.08281longerK562AQR
MXERETSATENSG00000042445.9chr2-8557076185570921855711218557128885569804855705048557136185571471-0.186000.004560.069042includedHepG2FTO
MXERETSATENSG00000042445.9chr2-8557076185570921855711218557128885569804855705048557136185571471-0.134000.000930.095432includedHepG2SUGP2
MXERETSATENSG00000042445.9chr2-8557076185570921855711218557128885569804855705048557136185571471-0.171000.002590.068842includedHepG2HNRNPC
MXERETSATENSG00000042445.9chr2-8557076185570921855713618557147185570093855705048557171685571855-0.151000.001380.046992includedHepG2SUPV3L1
MXERETSATENSG00000042445.9chr2-8557076185570921855711218557128885569804855705048557136185571471-0.168000.000290.014232includedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RETSAT is not avaliable on ENCORE database.