CIRBP

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CIRBP	ENSG00000099622.13	95.99	212.95	154.47	ENCSR000AEF
HepG2	CIRBP	ENSG00000099622.13	165.23	126.06	145.64	ENCSR985KAT
K562	CIRBP	ENSG00000099622.13	249.02	149.18	199.10	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Controls	Method	Note
knockdown followed by RNA-seq	CIRBP-BGKLV11-K562	ENCSR056QEW	CIRBP	K562	Released	ENCSR129RWD	shRNA	KD% = ,
knockdown followed by RNA-seq	CIRBP-BGHLV12-HepG2	ENCSR230ORC	CIRBP	HepG2	Released	ENCSR237YZT	shRNA	KD% = ,no clear bands
knockdown followed by RNA-seq	CIRBP-BGKcLV11-K562	ENCSR452KAP	CIRBP	K562	Released	ENCSR292PXV	CRISPR	KD% = 73.5,80.7
knockdown followed by RNA-seq	CIRBP-BGHcLV12-HepG2	ENCSR010XIH	CIRBP	HepG2	Released	ENCSR827PII	CRISPR	KD% = 99.7,99.7

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
CIRBP	ENCAB000BFF	RN032P	1			Released, ENCODE3	BGHcLV12-19, Released, ENCODE4	BGKcLV11-33, Released, ENCODE4

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
CIRBP	K562	shRNA	ENCSR056QEW	ENCSR129RWD	CIRBP-LV11-3,CIRBP-LV11-4	Nontarget-LV11-1,nontarget-LV11-2	,	Released	ENCODE3
CIRBP	HepG2	shRNA	ENCSR230ORC	ENCSR237YZT	CIRBP-BGHLV12-7,CIRBP-BGHLV12-8	NT-BGHLV12-01,NT-BGHLV12-02	,no clear bands	Released	ENCODE3
CIRBP	K562	CRISPR			BGKcLV11-31,BGKcLV11-32	BGKcLV11-1,BGKcLV11-2	42.5,52.6	NotSatisfied	ENCODE4
CIRBP	K562	CRISPR	ENCSR452KAP	ENCSR292PXV	CIRBP-BGKcLV11-33,CIRBP-BGKcLV11-34	NT-BGKcLV11-1,NT-BGKcLV11-2	73.5,80.7	Released	ENCODE4
CIRBP	HepG2	CRISPR	ENCSR010XIH	ENCSR827PII	CIRBP-BGHcLV12-19,CIRBP-BGHcLV12-20	NT-BGHcLV12-1,NT-BGHcLV12-2	99.7,99.7	Released	ENCODE4
CIRBP	HepG2	CRISPR			BGHcLV12-21,BGHcLV12-22	BGHcLV12-1,BGHcLV12-2	99.0,99.1	NotSatisfied	ENCODE4

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CIRBP is not avaliable on ENCORE database.

Proteins bound to RNA

CIRBP RNA is bound by 41 proteins.

eCLIP assay for CIRBP is not avaliable on ENCORE database.

41 proteins are bound to CIRBP RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	1274247	1274344	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.31797	65.10775	HepG2	SF3A3
chr19	1271506	1271567	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.35987	5.89769	K562	XRN2
chr19	1272059	1272099	+	3'-UTR,CDS,intron-Distal,intron-Proximal	5.62949	400.00000	HepG2	PRPF8
chr19	1272094	1272132	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.05947	10.39638	HepG2	BUD13
chr19	1272078	1272118	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.15373	7.48125	HepG2	SF3B4
chr19	1271446	1271466	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.01814	11.86893	K562	DDX24
chr19	1273064	1273097	+	3'-UTR,intron-Distal,intron-Proximal	3.38763	3.31456	K562	TIA1
chr19	1270911	1270943	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.64022	10.70520	HepG2	BUD13
chr19	1274311	1274360	+	3'-UTR,intron-Proximal	3.18100	6.05650	K562	XRN2
chr19	1271530	1271558	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.48912	54.15875	K562	EFTUD2
chr19	1272038	1272100	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.25072	7.80035	K562	UCHL5
chr19	1274247	1274343	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.97497	9.17937	HepG2	AQR
chr19	1274643	1274716	+	3'-UTR,intron-Proximal	3.23479	6.68027	K562	ZC3H11A
chr19	1271214	1271244	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.86058	9.58474	HepG2	PPIG
chr19	1274670	1274731	+	3'-UTR	4.20103	17.07964	HepG2	PABPN1
chr19	1274483	1274500	+	3'-UTR,intron-Proximal	4.44234	10.30697	K562	AQR
chr19	1272047	1272058	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.52229	8.62097	K562	SF3B4
chr19	1274399	1274442	+	3'-UTR,intron-Proximal	3.91628	7.36708	HepG2	SRSF9
chr19	1272773	1272826	+	3'-UTR,intron-Distal	3.21367	9.48947	HepG2	SUB1
chr19	1274261	1274299	+	3'-UTR,intron-Proximal	6.54075	400.00000	K562	SF3B4
chr19	1271332	1271347	+	3'-UTR,CDS	3.12789	7.61685	HepG2	PPIG
chr19	1274304	1274354	+	3'-UTR,CDS,intron-Proximal	3.82436	11.12357	HepG2	PABPN1
chr19	1271563	1271624	+	3'-UTR,5'-UTR,CDS,intron-Distal	4.04824	40.73414	HepG2	PPIG
chr19	1272371	1272448	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.96335	27.16672	K562	BUD13
chr19	1274659	1274759	+	3'-UTR	3.88882	10.64971	HepG2	LSM11
chr19	1270926	1270935	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.78610	6.98305	HepG2	PPIG
chr19	1271268	1271330	+	3'-UTR,CDS,intron-Proximal	4.24941	21.15493	HepG2	SF3B4
chr19	1272295	1272316	+	3'-UTR,CDS,intron-Distal	3.95325	19.30377	HepG2	RBFOX2
chr19	1271549	1271563	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.78084	15.94708	HepG2	PPIG
chr19	1274384	1274445	+	3'-UTR,intron-Proximal	3.80115	14.33719	HepG2	SRSF1
chr19	1271553	1271564	+	3'-UTR,5'-UTR,CDS,intron-Distal	3.39296	10.67121	K562	DDX24
chr19	1272326	1272374	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.39303	12.93682	K562	PRPF8
chr19	1272781	1272797	+	3'-UTR,intron-Distal	3.26996	7.56145	K562	HNRNPC
chr19	1274303	1274369	+	3'-UTR,CDS,intron-Proximal	5.43868	48.86595	K562	SF3B4
chr19	1273601	1273621	+	3'-UTR,CDS,intron-Distal	4.16960	17.16849	HepG2	EFTUD2
chr19	1271980	1272051	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.33652	4.60832	HepG2	UCHL5
chr19	1271137	1271203	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.01296	5.93824	K562	LIN28B
chr19	1272023	1272117	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.74785	15.06963	K562	DDX24
chr19	1271667	1271713	+	3'-UTR,intron-Distal,intron-Proximal	4.13787	17.16885	K562	EFTUD2
chr19	1272246	1272310	+	3'-UTR,CDS,intron-Distal	4.22566	26.56618	HepG2	EFTUD2
chr19	1272367	1272439	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.19063	17.87926	K562	SF3B4
chr19	1271558	1271626	+	3'-UTR,5'-UTR,CDS,intron-Distal	4.19134	60.79621	K562	EFTUD2
chr19	1272758	1272812	+	3'-UTR,intron-Distal	3.10631	12.50675	HepG2	HNRNPC
chr19	1271624	1271631	+	3'-UTR,5'-UTR,CDS,intron-Distal	4.04913	12.35970	HepG2	PPIG
chr19	1274308	1274346	+	3'-UTR,intron-Proximal	4.46896	5.23082	K562	DDX24
chr19	1271279	1271353	+	3'-UTR,CDS,intron-Proximal	3.31047	8.33968	K562	SMNDC1
chr19	1274386	1274437	+	3'-UTR	3.05796	4.85261	K562	DDX24
chr19	1272368	1272427	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.42408	9.69737	HepG2	SF3B4
chr19	1273696	1273702	+	3'-UTR,CDS,intron-Distal	3.70403	6.87008	HepG2	PRPF8
chr19	1272812	1272830	+	3'-UTR,intron-Distal	3.21699	11.67442	HepG2	HNRNPC
chr19	1274284	1274350	+	3'-UTR,CDS,intron-Proximal	3.22799	8.80090	HepG2	U2AF2
chr19	1273586	1273601	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.26066	18.20722	HepG2	EFTUD2
chr19	1272093	1272117	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.96766	19.32372	K562	AQR
chr19	1273336	1273462	+	3'-UTR,intron-Distal,intron-Proximal	3.43879	54.14389	HepG2	EFTUD2
chr19	1274575	1274672	+	3'-UTR,intron-Proximal	5.47805	8.16909	HepG2	AQR
chr19	1274239	1274283	+	3'-UTR,intron-Distal,intron-Proximal	3.63142	13.45985	K562	BUD13
chr19	1273322	1273365	+	3'-UTR,intron-Distal	3.09503	3.76473	K562	DROSHA
chr19	1274254	1274359	+	3'-UTR,CDS,intron-Proximal	3.63883	40.47296	HepG2	SF3B4
chr19	1274362	1274485	+	3'-UTR,intron-Proximal	3.81652	16.92908	HepG2	PABPN1
chr19	1272310	1272369	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.29862	49.64415	HepG2	EFTUD2
chr19	1274397	1274411	+	3'-UTR	3.98196	14.22868	HepG2	PPIG
chr19	1271459	1271492	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.72677	21.06360	K562	EFTUD2
chr19	1271503	1271558	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.33927	10.61179	HepG2	SF3B4
chr19	1271565	1271632	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.66047	4.44552	K562	APOBEC3C
chr19	1271546	1271562	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.15093	12.10237	HepG2	GRSF1
chr19	1274647	1274661	+	3'-UTR,intron-Proximal	3.46791	4.11623	HepG2	SRSF9
chr19	1274633	1274670	+	3'-UTR,intron-Proximal	3.86061	12.29841	HepG2	PABPN1
chr19	1274382	1274399	+	3'-UTR	3.77647	7.31809	HepG2	GRWD1
chr19	1274443	1274521	+	3'-UTR,intron-Proximal	4.18785	20.82091	HepG2	PRPF8
chr19	1271549	1271631	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.41794	13.59535	K562	DDX6
chr19	1273177	1273259	+	3'-UTR,intron-Distal	3.03707	5.17059	HepG2	CSTF2
chr19	1273337	1273435	+	3'-UTR,intron-Distal,intron-Proximal	3.08942	4.48415	HepG2	GTF2F1
chr19	1274299	1274303	+	3'-UTR,intron-Proximal	6.09419	60.12810	K562	SF3B4
chr19	1272087	1272093	+	3'-UTR,CDS,intron-Distal,intron-Proximal	6.62126	68.84228	K562	AQR
chr19	1274428	1274494	+	3'-UTR,intron-Proximal	3.16796	8.48054	HepG2	AQR
chr19	1271424	1271446	+	3'-UTR,CDS,intron-Proximal	4.14137	29.08938	HepG2	PPIG
chr19	1272797	1272857	+	3'-UTR,intron-Distal	3.96852	12.09532	K562	HNRNPC
chr19	1271274	1271331	+	3'-UTR,CDS,intron-Proximal	4.33656	27.85883	K562	EFTUD2
chr19	1271552	1271615	+	3'-UTR,5'-UTR,CDS,intron-Distal	3.05531	13.78845	K562	DDX55
chr19	1271381	1271424	+	3'-UTR,CDS,intron-Proximal	3.72211	20.41646	HepG2	PPIG
chr19	1271979	1272040	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.78245	25.32640	HepG2	PPIG
chr19	1271500	1271567	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.19219	4.24990	K562	SMNDC1
chr19	1271518	1271563	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.48258	8.96794	HepG2	SF3A3
chr19	1271546	1271621	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.24461	73.71402	HepG2	EFTUD2
chr19	1274646	1274656	+	3'-UTR,intron-Proximal	4.16552	9.28206	HepG2	PPIG
chr19	1274290	1274340	+	3'-UTR,CDS,intron-Proximal	3.39691	8.06637	K562	SMNDC1
chr19	1274372	1274447	+	3'-UTR,intron-Proximal	3.46153	8.73292	K562	SRSF1
chr19	1272058	1272109	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.81602	12.41492	K562	SF3B4
chr19	1271564	1271632	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.25894	47.93074	K562	DDX24
chr19	1274305	1274368	+	3'-UTR,CDS,intron-Proximal	3.63129	20.28633	K562	BUD13
chr19	1271236	1271268	+	3'-UTR,CDS,intron-Proximal	3.31636	3.63065	HepG2	SF3B4
chr19	1271564	1271589	+	3'-UTR,5'-UTR,CDS,intron-Distal	3.39277	8.84351	HepG2	PRPF4
chr19	1274437	1274483	+	3'-UTR,intron-Proximal	4.59739	24.89966	K562	AQR
chr19	1272085	1272170	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.38931	70.67377	HepG2	EFTUD2
chr19	1271978	1271996	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.58998	4.54145	K562	DDX6
chr19	1272087	1272139	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.31026	29.09133	K562	EFTUD2
chr19	1272400	1272433	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.14447	4.90153	K562	AQR
chr19	1272040	1272096	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.16395	15.76739	HepG2	PPIG
chr19	1272052	1272058	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.25996	40.70329	K562	AQR
chr19	1272365	1272426	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.03195	11.36995	HepG2	SF3A3
chr19	1272830	1272857	+	3'-UTR,intron-Distal	3.92816	5.79256	HepG2	HNRNPC
chr19	1271451	1271467	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.17544	7.36319	HepG2	GRSF1
chr19	1274619	1274732	+	3'-UTR,intron-Proximal	4.63149	36.92639	K562	AQR
chr19	1272058	1272087	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.81251	58.21840	K562	AQR
chr19	1271663	1271707	+	3'-UTR,intron-Distal,intron-Proximal	5.11357	32.25208	HepG2	EFTUD2
chr19	1272049	1272052	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.24509	42.41954	K562	AQR
chr19	1274500	1274527	+	3'-UTR,intron-Proximal	5.16263	13.40185	K562	AQR
chr19	1272023	1272085	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.35528	54.03202	HepG2	EFTUD2
chr19	1274411	1274449	+	3'-UTR,intron-Proximal	4.38851	21.69919	HepG2	PPIG
chr19	1271979	1271993	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.29476	14.57455	K562	DDX24
chr19	1273702	1273752	+	3'-UTR,intron-Distal,intron-Proximal	4.41421	18.39343	HepG2	PRPF8
chr19	1274392	1274486	+	3'-UTR,intron-Proximal	3.32467	12.43190	HepG2	BUD13
chr19	1271548	1271557	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.10664	3.80339	HepG2	PRPF4
chr19	1274307	1274355	+	3'-UTR,intron-Proximal	3.24467	11.00118	K562	GPKOW
chr19	1274353	1274377	+	3'-UTR	3.56600	11.04639	HepG2	PPIG
chr19	1274306	1274383	+	3'-UTR,CDS,intron-Proximal	3.23505	9.66252	HepG2	SRSF1
chr19	1274283	1274305	+	3'-UTR,intron-Proximal	4.08777	17.41286	K562	BUD13
chr19	1271446	1271467	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.49480	25.64474	HepG2	PPIG
chr19	1274325	1274378	+	3'-UTR,intron-Proximal	3.68323	3.40562	HepG2	SRSF9
chr19	1272316	1272375	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.34434	19.81023	HepG2	RBFOX2
chr19	1272020	1272059	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.38552	400.00000	HepG2	PRPF8
chr19	1270922	1270949	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.45348	6.35230	K562	DDX3X
chr19	1274377	1274397	+	3'-UTR	3.86686	13.79768	HepG2	PPIG
chr19	1271428	1271476	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.40264	29.58152	HepG2	EFTUD2
chr19	1273708	1273755	+	3'-UTR,intron-Distal,intron-Proximal	3.11746	18.61645	K562	PRPF8
chr19	1274258	1274261	+	3'-UTR,intron-Proximal	6.65121	72.43401	K562	SF3B4
chr19	1272158	1272233	+	3'-UTR,CDS,intron-Distal	4.14505	35.33748	K562	PRPF8
chr19	1274818	1274878	+	3'-UTR	3.05308	5.22945	HepG2	CSTF2T
chr19	1274631	1274641	+	3'-UTR,intron-Proximal	3.40771	4.77481	HepG2	BUD13
chr19	1274644	1274657	+	3'-UTR,intron-Proximal	3.60359	5.88140	HepG2	LSM11
chr19	1274642	1274665	+	3'-UTR,intron-Proximal	3.78502	12.48179	HepG2	PRPF8
chr19	1272016	1272087	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.83682	32.69880	K562	EFTUD2
chr19	1271986	1272158	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.18521	400.00000	K562	PRPF8
chr19	1271337	1271363	+	3'-UTR,CDS,intron-Proximal	4.20084	7.39346	K562	DDX24
chr19	1269383	1269406	+	5'-UTR,intron-Distal	3.18833	4.63145	K562	BUD13
chr19	1269361	1269411	+	5'-UTR,intron-Distal,intron-Proximal	3.26497	11.25618	HepG2	PPIG
chr19	1269336	1269407	+	5'-UTR,intron-Distal,intron-Proximal	3.35253	5.05623	K562	NCBP2
chr19	1266625	1266706	+	5'-UTR,intron-Distal,intron-Proximal	4.27728	4.92128	HepG2	CSTF2T
chr19	1269337	1269414	+	5'-UTR,intron-Distal,intron-Proximal	3.02917	11.78486	HepG2	NCBP2
chr19	1270264	1270344	+	5'-UTR,intron-Distal	3.79288	3.29491	K562	HNRNPA1
chr19	1269403	1269453	+	5'-UTR,intron-Distal,intron-Proximal	3.78563	6.28005	HepG2	XPO5
chr19	1269350	1269409	+	5'-UTR,intron-Distal,intron-Proximal	4.90977	8.08662	K562	DDX24
chr19	1270812	1270909	+	5'-UTR,intron-Distal,intron-Proximal	4.17143	3.29026	K562	KHDRBS1
chr19	1270966	1271031	+	5'-UTR,CDS	3.19990	4.56648	HepG2	GRSF1
chr19	1269402	1269454	+	5'-UTR,intron-Distal,intron-Proximal	3.29332	8.48786	HepG2	PRPF8
chr19	1270871	1270904	+	5'-UTR,intron-Proximal	4.22120	4.32536	HepG2	SF3B4
chr19	1267170	1267279	+	5'-UTR,intron-Distal,intron-Proximal	3.53584	7.44912	HepG2	CSTF2T
chr19	1269335	1269411	+	5'-UTR,intron-Distal,intron-Proximal	3.55444	10.73037	K562	DDX3X
chr19	1266911	1266977	+	5'-UTR,intron-Distal	3.37809	3.48399	HepG2	CSTF2T
chr19	1269389	1269451	+	5'-UTR,intron-Distal,intron-Proximal	5.17785	8.16909	HepG2	AQR
chr19	1271284	1271312	+	CDS,intron-Proximal	6.07701	19.27235	HepG2	EFTUD2
chr19	1271495	1271546	+	CDS,intron-Distal,intron-Proximal	6.65073	53.52908	HepG2	EFTUD2
chr19	1271091	1271137	+	CDS,intron-Distal,intron-Proximal	4.25624	4.38082	K562	SMNDC1
chr19	1271269	1271323	+	CDS,intron-Proximal	3.39426	8.58707	K562	XRN2
chr19	1271492	1271530	+	CDS,intron-Distal,intron-Proximal	5.27611	41.56454	K562	EFTUD2
chr19	1271273	1271328	+	CDS,intron-Proximal	5.30436	42.11544	K562	SF3B4
chr19	1271471	1271477	+	CDS,intron-Distal,intron-Proximal	4.13715	10.64040	HepG2	PRPF8
chr19	1271498	1271535	+	CDS,intron-Distal,intron-Proximal	3.47845	4.28981	HepG2	RBM22
chr19	1271505	1271548	+	CDS,intron-Distal,intron-Proximal	4.94441	15.72959	K562	SF3B4
chr19	1270985	1271034	+	CDS	3.00819	7.87037	HepG2	PPIG
chr19	1271089	1271133	+	CDS,intron-Proximal	3.88374	7.06426	HepG2	SF3B4
chr19	1271278	1271319	+	CDS,intron-Proximal	5.01000	9.84788	HepG2	SF3A3
chr19	1271031	1271075	+	CDS,intron-Proximal	4.06377	14.92191	HepG2	PRPF8
chr19	1271088	1271138	+	CDS,intron-Distal,intron-Proximal	4.97820	14.61447	K562	SF3B4
chr19	1269509	1269596	+	intron-Distal	3.46293	4.20880	HepG2	GTF2F1
chr19	1269475	1269597	+	intron-Distal,intron-Proximal	3.89863	7.43919	K562	AKAP8L
chr19	1269761	1269814	+	intron-Distal,intron-Proximal	3.02624	7.56265	HepG2	XPO5
chr19	1269510	1269549	+	intron-Distal	3.89217	11.20406	HepG2	EFTUD2
chr19	1270083	1270189	+	intron-Distal	3.49285	6.76916	HepG2	HNRNPK
chr19	1267752	1267805	+	intron-Distal	3.32704	3.92299	HepG2	CSTF2T
chr19	1269497	1269558	+	intron-Distal,intron-Proximal	3.49912	3.77433	K562	XRN2
chr19	1268416	1268462	+	intron-Distal	3.87360	3.63902	HepG2	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CIRBP is not avaliable on ENCORE database.

Diffrential Expression

6,478 differentially expressed genes after Knockdown/Knockout CIRBP protein.

107 RBPs can affect the levels of CIRBP.

6,478 differentially expressed genes after Knockdown/Knockout CIRBP protein :

Only display 100 entries as example. Please click "View All" button to see all 6,478 entries.

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TSPAN6	ENSG00000000003.10	4501.58300	2206.28760	1.02870	20.78210	18.90250	HepG2	CIRBP
DPM1	ENSG00000000419.8	1309.05580	2069.44910	-0.66070	7.87360	6.62160	HepG2	CIRBP
SCYL3	ENSG00000000457.9	217.51920	100.85260	1.10880	6.28290	5.14690	HepG2	CIRBP
C1orf112	ENSG00000000460.12	166.95510	252.50320	-0.59680	2.58510	1.83560	HepG2	CIRBP
GCLC	ENSG00000001084.6	2040.06890	1453.73490	0.48880	4.70970	3.71570	HepG2	CIRBP
NFYA	ENSG00000001167.10	1150.41780	819.68520	0.48890	3.95650	3.04190	HepG2	CIRBP
STPG1	ENSG00000001460.13	153.37990	93.57290	0.71280	2.45840	1.72530	HepG2	CIRBP
LAS1L	ENSG00000001497.12	537.44580	754.19050	-0.48880	3.46080	2.60170	HepG2	CIRBP
SEMA3F	ENSG00000001617.7	223.87080	472.08810	-1.07640	5.96080	4.85500	HepG2	CIRBP
ANKIB1	ENSG00000001629.5	1415.92310	1096.46580	0.36880	2.63320	1.87770	HepG2	CIRBP
CYP51A1	ENSG00000001630.11	7890.72090	12662.18890	-0.68230	10.38170	8.96950	HepG2	CIRBP
CD99	ENSG00000002586.13	3898.32870	2952.33150	0.40090	3.72710	2.83890	HepG2	CIRBP
LASP1	ENSG00000002834.13	9308.52320	6676.18200	0.47940	5.47920	4.41170	HepG2	CIRBP
M6PR	ENSG00000003056.3	983.03660	2135.17370	-1.11900	20.51070	18.63820	HepG2	CIRBP
CFLAR	ENSG00000003402.15	2499.48520	1826.90410	0.45210	4.30090	3.34940	HepG2	CIRBP
TFPI	ENSG00000003436.10	13227.37790	19513.08870	-0.56090	6.56780	5.41230	HepG2	CIRBP
RBM5	ENSG00000003756.12	2522.75970	2064.16140	0.28930	2.04600	1.37440	HepG2	CIRBP
SLC7A2	ENSG00000003989.12	5059.00200	12350.15970	-1.28760	34.65240	32.40140	HepG2	CIRBP
ARF5	ENSG00000004059.6	1565.33500	1262.14990	0.31050	2.09650	1.41730	HepG2	CIRBP
AK2	ENSG00000004455.12	2770.10090	3668.85150	-0.40540	3.73600	2.84660	HepG2	CIRBP
FKBP4	ENSG00000004478.5	1360.97390	1831.19780	-0.42810	3.59970	2.72620	HepG2	CIRBP
CAMKK1	ENSG00000004660.10	21.91140	50.80970	-1.21340	2.25540	1.55310	HepG2	CIRBP
NDUFAB1	ENSG00000004779.5	1649.69780	2022.52050	-0.29400	1.99240	1.32900	HepG2	CIRBP
ZMYND10	ENSG00000004838.9	19.95480	4.29230	2.21680	2.24130	1.54080	HepG2	CIRBP
SLC25A13	ENSG00000004864.9	2395.92810	1649.45360	0.53850	5.81400	4.71990	HepG2	CIRBP
ST7	ENSG00000004866.14	760.00020	453.31460	0.74540	7.04380	5.84960	HepG2	CIRBP
SKAP2	ENSG00000005020.8	881.37980	541.90870	0.70160	6.68950	5.52070	HepG2	CIRBP
SLC25A5	ENSG00000005022.5	13304.09980	9520.81230	0.48260	5.77600	4.68380	HepG2	CIRBP
DHX33	ENSG00000005100.8	1324.98610	849.25030	0.64160	6.71990	5.54780	HepG2	CIRBP
LIG3	ENSG00000005156.7	425.48740	692.86190	-0.70350	6.02410	4.91390	HepG2	CIRBP
ACSM3	ENSG00000005187.7	1895.37810	1458.94160	0.37750	2.19110	1.49830	HepG2	CIRBP
AC004381.6	ENSG00000005189.15	164.08980	247.18050	-0.59110	2.51360	1.77170	HepG2	CIRBP
PON1	ENSG00000005421.4	149.16980	23.46460	2.66830	6.78640	5.61070	HepG2	CIRBP
WDR54	ENSG00000005448.12	34.84690	194.27650	-2.47900	18.43970	16.65550	HepG2	CIRBP
CROT	ENSG00000005469.7	828.69210	278.23370	1.57440	24.51000	22.51540	HepG2	CIRBP
ABCB4	ENSG00000005471.11	1581.20010	1040.91760	0.60310	6.31890	5.18110	HepG2	CIRBP
RHBDD2	ENSG00000005486.12	412.00480	768.78570	-0.89990	4.78810	3.78420	HepG2	CIRBP
MYCBP2	ENSG00000005810.13	1398.98180	989.72970	0.49920	4.37090	3.41100	HepG2	CIRBP
ITGAL	ENSG00000005844.13	328.87500	232.72410	0.49880	2.32010	1.60690	HepG2	CIRBP
PDK2	ENSG00000005882.7	297.94120	657.27610	-1.14150	13.37210	11.81190	HepG2	CIRBP
ZFX	ENSG00000005889.11	2675.04620	1655.78260	0.69200	9.32390	7.97680	HepG2	CIRBP
ITGA2B	ENSG00000005961.13	6.92670	51.09590	-2.88300	7.00050	5.81020	HepG2	CIRBP
ASB4	ENSG00000005981.8	9.79200	30.11480	-1.62080	2.08960	1.41120	HepG2	CIRBP
TMEM98	ENSG00000006042.7	1372.53700	2468.24650	-0.84660	12.79690	11.26670	HepG2	CIRBP
SYNRG	ENSG00000006114.11	1224.75750	747.05840	0.71310	7.88490	6.63260	HepG2	CIRBP
AP2B1	ENSG00000006125.12	3769.29840	5362.24560	-0.50850	5.87800	4.77990	HepG2	CIRBP
CX3CL1	ENSG00000006210.6	4289.65610	3417.99990	0.32760	2.67820	1.91730	HepG2	CIRBP
MAP3K9	ENSG00000006432.11	573.97100	395.92470	0.53570	3.43090	2.57510	HepG2	CIRBP
JHDM1D	ENSG00000006459.6	1084.11810	1898.46690	-0.80830	11.19220	9.73770	HepG2	CIRBP
AGK	ENSG00000006530.11	360.85650	539.67710	-0.58070	3.89730	2.98920	HepG2	CIRBP
ALDH3B1	ENSG00000006534.11	295.43760	122.60040	1.26880	9.56650	8.20130	HepG2	CIRBP
PHTF2	ENSG00000006576.12	486.14000	341.41650	0.50970	2.26560	1.56110	HepG2	CIRBP
FARP2	ENSG00000006607.9	1326.46950	985.83900	0.42810	3.30620	2.46600	HepG2	CIRBP
DBF4	ENSG00000006634.3	219.89300	396.04960	-0.84890	6.00620	4.89770	HepG2	CIRBP
PAF1	ENSG00000006712.10	1095.18050	797.06770	0.45830	3.50550	2.64140	HepG2	CIRBP
VPS41	ENSG00000006715.11	1088.43960	869.17830	0.32440	2.03960	1.36960	HepG2	CIRBP
ARHGAP44	ENSG00000006740.12	57.85240	101.09280	-0.80520	2.14910	1.46140	HepG2	CIRBP
ARSD	ENSG00000006756.11	217.29660	365.72880	-0.75110	4.70160	3.70920	HepG2	CIRBP
PNPLA4	ENSG00000006757.7	505.23280	326.97170	0.62770	4.36500	3.40610	HepG2	CIRBP
ADIPOR2	ENSG00000006831.9	3495.39210	6087.86510	-0.80050	13.50430	11.94130	HepG2	CIRBP
UPP2	ENSG00000007001.8	36.08010	5.31100	2.76400	4.96750	3.94740	HepG2	CIRBP
MARK4	ENSG00000007047.10	599.36000	967.52610	-0.69090	4.63670	3.64960	HepG2	CIRBP
TRAPPC6A	ENSG00000007255.6	169.64420	297.89960	-0.81230	2.87230	2.08480	HepG2	CIRBP
LUC7L	ENSG00000007392.12	696.76040	914.22050	-0.39190	2.56750	1.82010	HepG2	CIRBP
MYLIP	ENSG00000007944.10	245.05890	104.14890	1.23440	8.05660	6.79080	HepG2	CIRBP
PSMB1	ENSG00000008018.8	6300.83060	4750.06800	0.40750	4.07610	3.14720	HepG2	CIRBP
CDKL5	ENSG00000008086.6	100.54390	53.47650	0.91070	2.63780	1.88170	HepG2	CIRBP
CDK11A	ENSG00000008128.18	508.78430	383.63120	0.40720	2.14900	1.46140	HepG2	CIRBP
SYPL1	ENSG00000008282.3	2631.65820	1969.68450	0.41790	3.77600	2.88240	HepG2	CIRBP
CYB561	ENSG00000008283.11	19.99200	54.67840	-1.45150	2.97400	2.17260	HepG2	CIRBP
SPAG9	ENSG00000008294.16	2641.73720	4658.89900	-0.81850	13.68260	12.11120	HepG2	CIRBP
AASS	ENSG00000008311.10	1136.72180	504.38780	1.17220	13.13780	11.58980	HepG2	CIRBP
MGST1	ENSG00000008394.8	4623.16600	2383.91110	0.95550	18.10020	16.33970	HepG2	CIRBP
ST3GAL1	ENSG00000008513.10	3518.92640	2483.09420	0.50290	5.43150	4.36850	HepG2	CIRBP
IL32	ENSG00000008517.12	2503.11140	3265.71990	-0.38370	3.10480	2.28770	HepG2	CIRBP
RHOBTB2	ENSG00000008853.12	583.45690	382.24600	0.61000	4.31850	3.36570	HepG2	CIRBP
HEATR5B	ENSG00000008869.7	924.39570	619.90350	0.57640	4.83480	3.82780	HepG2	CIRBP
SEC62	ENSG00000008952.12	2443.82110	3533.26640	-0.53190	4.40320	3.43910	HepG2	CIRBP
RPS20	ENSG00000008988.5	7635.30490	13053.41770	-0.77370	13.36730	11.80840	HepG2	CIRBP
UBE3C	ENSG00000009335.13	1988.77270	1313.56570	0.59830	6.65500	5.48960	HepG2	CIRBP
REV3L	ENSG00000009413.11	1302.86130	963.28870	0.43550	3.44410	2.58710	HepG2	CIRBP
VTA1	ENSG00000009844.11	2606.84470	2111.27390	0.30410	2.23430	1.53440	HepG2	CIRBP
MLXIPL	ENSG00000009950.11	4418.98030	2942.91830	0.58640	2.30540	1.59440	HepG2	CIRBP
RANBP9	ENSG00000010017.9	1034.77840	1690.71830	-0.70830	8.49090	7.19490	HepG2	CIRBP
SPRTN	ENSG00000010072.11	236.41700	132.90180	0.83090	4.28710	3.33760	HepG2	CIRBP
METTL13	ENSG00000010165.15	680.80180	518.26080	0.39350	2.29160	1.58360	HepG2	CIRBP
CD9	ENSG00000010278.7	235.56380	461.19010	-0.96920	8.21260	6.93870	HepG2	CIRBP
NCAPD2	ENSG00000010292.8	2358.66960	3065.27020	-0.37800	3.30860	2.46790	HepG2	CIRBP
GIPR	ENSG00000010310.4	7.83540	47.21550	-2.59120	5.65160	4.57060	HepG2	CIRBP
STAB1	ENSG00000010327.6	32.93660	9.32870	1.81980	2.68260	1.92130	HepG2	CIRBP
SLC6A13	ENSG00000010379.11	18.95340	2.85010	2.73330	2.68700	1.92460	HepG2	CIRBP
HFE	ENSG00000010704.14	307.73320	223.26970	0.46280	1.97670	1.31660	HepG2	CIRBP
HIVEP2	ENSG00000010818.4	701.26700	1058.83160	-0.59440	5.39550	4.33530	HepG2	CIRBP
NME2	ENSG00000011052.17	251.95730	547.60820	-1.12000	2.02530	1.35730	HepG2	CIRBP
TSPAN9	ENSG00000011105.7	2055.62870	2968.49510	-0.53020	5.88900	4.78990	HepG2	CIRBP
BTBD7	ENSG00000011114.10	919.29570	596.93040	0.62290	5.54800	4.47600	HepG2	CIRBP
ABHD5	ENSG00000011198.3	250.27960	102.36340	1.28970	8.79110	7.47640	HepG2	CIRBP
SYT7	ENSG00000011347.5	334.53120	542.35630	-0.69710	4.11890	3.18640	HepG2	CIRBP
LARS2	ENSG00000011376.5	413.72040	940.91210	-1.18540	16.79880	15.09190	HepG2	CIRBP
PIK3C2A	ENSG00000011405.9	2095.55680	2625.67760	-0.32540	2.48960	1.75180	HepG2	CIRBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

107 RBPs can affect the gene expression of CIRBP :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CIRBP	ENSG00000099622.9	3667.45000	2995.10790	0.29210	2.17560	1.33710	HepG2	ABCF1
CIRBP	ENSG00000099622.9	3618.69420	2477.21910	0.54660	5.26870	3.96860	HepG2	BCCIP
CIRBP	ENSG00000099622.9	2854.98850	2152.56600	0.40730	2.48430	1.63270	HepG2	BCLAF1
CIRBP	ENSG00000099622.9	1198.58970	3278.36480	-1.45160	36.52870	34.21180	HepG2	CIRBP
CIRBP	ENSG00000099622.9	3677.69880	3315.50460	0.14950	1.96920	1.39600	HepG2	CKAP4
CIRBP	ENSG00000099622.9	1858.86020	1418.42890	0.39000	3.06500	2.34640	HepG2	CPSF6
CIRBP	ENSG00000099622.9	1942.89640	1530.24150	0.34430	3.00730	1.88830	HepG2	CSTF2
CIRBP	ENSG00000099622.9	2273.65730	1811.17770	0.32800	4.21840	2.80780	HepG2	DDX1
CIRBP	ENSG00000099622.9	3711.70610	2683.13400	0.46810	6.03930	5.08160	HepG2	DDX21
CIRBP	ENSG00000099622.9	3585.58900	2278.97950	0.65370	6.35140	4.48840	HepG2	DDX27
CIRBP	ENSG00000099622.9	2877.58060	1845.19250	0.64100	7.97590	5.81030	HepG2	DDX28
CIRBP	ENSG00000099622.9	2849.82330	3994.81650	-0.48730	4.83700	4.02860	HepG2	DDX3X
CIRBP	ENSG00000099622.9	2590.38660	3432.05540	-0.40590	3.14820	2.49330	HepG2	DDX6
CIRBP	ENSG00000099622.9	2296.68620	1712.91910	0.42300	3.18790	2.13970	HepG2	DHX30
CIRBP	ENSG00000099622.9	4550.35890	3172.78880	0.52010	14.20850	12.92140	HepG2	DKC1
CIRBP	ENSG00000099622.9	2406.75040	1775.93340	0.43840	7.32850	6.22740	HepG2	DNAJC21
CIRBP	ENSG00000099622.9	2523.31320	1760.39070	0.51930	14.02490	12.67380	HepG2	DNAJC2
CIRBP	ENSG00000099622.9	6753.89800	3298.89590	1.03360	20.36450	18.85210	HepG2	EIF2S1
CIRBP	ENSG00000099622.9	1597.43650	2042.68690	-0.35470	2.45100	1.59500	HepG2	EIF3D
CIRBP	ENSG00000099622.9	3051.58660	2534.97370	0.26750	2.64370	1.58640	HepG2	EIF3G
CIRBP	ENSG00000099622.9	4650.17690	3645.46350	0.35110	2.49060	1.88290	HepG2	EIF4A3
CIRBP	ENSG00000099622.9	3579.43270	2594.48960	0.46420	5.36990	3.89630	HepG2	ESF1
CIRBP	ENSG00000099622.9	6947.39450	5833.52970	0.25200	4.14110	3.43120	HepG2	ETF1
CIRBP	ENSG00000099622.9	2229.31190	1420.84440	0.64970	2.59490	1.61320	HepG2	FTO
CIRBP	ENSG00000099622.9	3094.20570	2142.66560	0.53010	7.43740	6.18530	HepG2	FUBP3
CIRBP	ENSG00000099622.9	4798.35910	3412.24370	0.49170	4.68710	3.83160	HepG2	G3BP1
CIRBP	ENSG00000099622.9	5036.78330	3622.95900	0.47520	5.11090	3.88720	HepG2	G3BP2
CIRBP	ENSG00000099622.9	4024.70690	3239.15080	0.31320	2.34490	1.41030	HepG2	GNB2L1
CIRBP	ENSG00000099622.9	2820.64740	1607.92040	0.81070	10.85500	9.64420	HepG2	GPKOW
CIRBP	ENSG00000099622.9	3659.06280	3166.07570	0.20870	2.70520	1.73650	HepG2	HDGF
CIRBP	ENSG00000099622.9	2941.71560	1792.94890	0.71420	8.36690	7.33180	HepG2	HNRNPA1
CIRBP	ENSG00000099622.9	5508.29730	3455.96510	0.67240	10.89520	9.58870	HepG2	HNRNPK
CIRBP	ENSG00000099622.9	4651.37440	3668.53720	0.34240	6.53000	5.53750	HepG2	HNRNPL
CIRBP	ENSG00000099622.9	2827.69150	1534.46610	0.88180	14.78640	13.48960	HepG2	HNRNPLL
CIRBP	ENSG00000099622.9	1670.73510	2086.62600	-0.32070	3.08040	2.07940	HepG2	HNRNPM
CIRBP	ENSG00000099622.9	2737.69910	1981.18140	0.46650	10.37740	9.26520	HepG2	HNRNPU
CIRBP	ENSG00000099622.9	2711.40850	3468.35550	-0.35520	2.90150	2.21340	HepG2	IGF2BP2
CIRBP	ENSG00000099622.9	5179.59710	3255.36780	0.66990	2.91020	1.90210	HepG2	IGF2BP3
CIRBP	ENSG00000099622.9	4537.35570	3488.78930	0.37900	2.47020	1.53240	HepG2	KHSRP
CIRBP	ENSG00000099622.9	3543.97930	3031.47080	0.22530	3.37600	2.24960	HepG2	KIF1C
CIRBP	ENSG00000099622.9	2880.52340	3700.52120	-0.36140	2.62090	2.00600	HepG2	MATR3
CIRBP	ENSG00000099622.9	1959.05710	2447.64470	-0.32120	3.20470	2.33630	HepG2	MSI2
CIRBP	ENSG00000099622.9	2339.14470	1564.91080	0.57980	4.01310	2.83460	HepG2	MTPAP
CIRBP	ENSG00000099622.9	2515.20020	2055.30820	0.29120	2.59000	1.41550	HepG2	NAA15
CIRBP	ENSG00000099622.9	2643.76810	3787.60740	-0.51870	5.12210	4.27250	HepG2	NCBP2
CIRBP	ENSG00000099622.9	3622.03560	2869.21600	0.33600	3.25600	1.72270	HepG2	NIP7
CIRBP	ENSG00000099622.9	2036.49200	1360.58270	0.58180	6.98640	5.83360	HepG2	NSUN2
CIRBP	ENSG00000099622.9	2615.89850	1960.97250	0.41560	7.78410	6.47850	HepG2	PARN
CIRBP	ENSG00000099622.9	3979.26310	3296.14490	0.27160	2.61780	2.02320	HepG2	PCBP1
CIRBP	ENSG00000099622.9	2318.26460	1767.04750	0.39160	4.88460	3.93420	HepG2	PPIL4
CIRBP	ENSG00000099622.9	2397.33460	2103.85770	0.18830	1.98320	1.32060	HepG2	PRPF4
CIRBP	ENSG00000099622.9	2557.48650	1879.02460	0.44460	4.20020	3.22880	HepG2	PRPF8
CIRBP	ENSG00000099622.9	4183.75310	3354.24830	0.31870	3.33850	2.74890	HepG2	PTBP1
CIRBP	ENSG00000099622.9	2894.21480	3812.10620	-0.39740	4.75570	4.00040	HepG2	PUF60
CIRBP	ENSG00000099622.9	4450.14350	4046.73030	0.13700	2.02710	1.50320	HepG2	PUM1
CIRBP	ENSG00000099622.9	4611.57860	3377.86530	0.44900	12.76240	11.60410	HepG2	PUS1
CIRBP	ENSG00000099622.9	1420.72950	2620.44400	-0.88320	6.69330	5.62260	HepG2	RAVER1
CIRBP	ENSG00000099622.9	3411.76250	2891.89860	0.23840	2.37700	1.57640	HepG2	RBM15
CIRBP	ENSG00000099622.9	2744.96000	4875.71300	-0.82880	28.82150	27.50100	HepG2	RBM22
CIRBP	ENSG00000099622.9	2665.32710	3296.60340	-0.30670	1.96940	1.39310	HepG2	RBM25
CIRBP	ENSG00000099622.9	3588.21410	2735.04300	0.39160	2.41150	1.66220	HepG2	RPS3A
CIRBP	ENSG00000099622.9	2342.64770	1764.30240	0.40890	8.59380	7.55100	HepG2	SAFB2
CIRBP	ENSG00000099622.9	4152.52880	3655.23860	0.18390	2.93720	2.21610	HepG2	SLBP
CIRBP	ENSG00000099622.9	2390.13800	2057.42880	0.21620	3.24860	2.56060	HepG2	SMN1
CIRBP	ENSG00000099622.9	2353.36310	1689.96070	0.47760	2.83830	2.04770	HepG2	SNRNP70
CIRBP	ENSG00000099622.9	3774.23460	5506.87080	-0.54500	19.06270	18.05670	HepG2	SRFBP1
CIRBP	ENSG00000099622.9	2522.80080	3644.76720	-0.53080	4.19740	3.64480	HepG2	SRSF1
CIRBP	ENSG00000099622.9	2046.41210	2487.82020	-0.28180	3.80420	3.00770	HepG2	SRSF7
CIRBP	ENSG00000099622.9	6265.66800	4781.14940	0.39000	9.83910	8.98660	HepG2	SSB
CIRBP	ENSG00000099622.9	5079.20070	4280.59450	0.24670	4.90990	4.12240	HepG2	SUCLG1
CIRBP	ENSG00000099622.9	4034.14190	2424.64100	0.73440	9.66670	8.52960	HepG2	SUPV3L1
CIRBP	ENSG00000099622.9	1990.88520	1495.57460	0.41260	3.97980	3.12920	HepG2	TARDBP
CIRBP	ENSG00000099622.9	4513.43620	3010.16590	0.58430	11.38430	9.72300	HepG2	TIA1
CIRBP	ENSG00000099622.9	3403.56260	1924.91440	0.82220	21.15340	20.01000	HepG2	TIAL1
CIRBP	ENSG00000099622.9	2336.35520	1942.30810	0.26640	2.04540	1.54660	HepG2	TRIM56
CIRBP	ENSG00000099622.9	4723.31040	3724.28470	0.34270	4.16530	3.06710	HepG2	TUFM
CIRBP	ENSG00000099622.9	1943.04880	2587.08870	-0.41300	3.66350	2.94470	HepG2	U2AF1
CIRBP	ENSG00000099622.9	1945.96040	2689.96580	-0.46710	10.87540	9.65880	HepG2	UPF1
CIRBP	ENSG00000099622.9	3541.86140	2220.35300	0.67360	5.88160	4.38080	HepG2	UPF2
CIRBP	ENSG00000099622.9	1993.55820	2597.05940	-0.38150	7.14070	6.25460	HepG2	UTP3
CIRBP	ENSG00000099622.9	4184.49180	2386.79180	0.80990	13.10140	11.54410	HepG2	XRN2
CIRBP	ENSG00000099622.9	4452.00210	3982.00550	0.16090	1.91140	1.42300	K562	AGGF1
CIRBP	ENSG00000099622.9	5493.28810	4375.82800	0.32800	3.56280	2.41160	K562	AKAP8
CIRBP	ENSG00000099622.9	4883.96320	4143.50790	0.23710	2.10700	1.53430	K562	AKAP8L
CIRBP	ENSG00000099622.9	3340.65610	4984.80560	-0.57740	6.08870	5.27650	K562	AQR
CIRBP	ENSG00000099622.9	1454.39870	1860.62960	-0.35540	2.82750	1.94530	K562	BOP1
CIRBP	ENSG00000099622.9	1695.09860	3023.74490	-0.83500	15.35750	12.78130	K562	CIRBP
CIRBP	ENSG00000099622.9	1505.86950	1978.27130	-0.39360	4.36010	3.37650	K562	CPSF6
CIRBP	ENSG00000099622.9	2229.44560	2763.96210	-0.31010	2.55340	1.67970	K562	EFTUD2
CIRBP	ENSG00000099622.9	3564.20870	3040.84140	0.22900	3.03270	1.75490	K562	EIF2S1
CIRBP	ENSG00000099622.9	8160.40300	5889.07630	0.47050	6.33720	4.93410	K562	EIF4G2
CIRBP	ENSG00000099622.9	2988.25280	2524.64210	0.24310	2.63330	1.37720	K562	EWSR1
CIRBP	ENSG00000099622.9	1830.58820	2460.88370	-0.42690	3.31940	1.40140	K562	FAM120A
CIRBP	ENSG00000099622.9	3043.91170	2260.98040	0.42890	4.71960	3.58970	K562	FIP1L1
CIRBP	ENSG00000099622.9	1627.87760	2013.06060	-0.30640	2.27800	1.49930	K562	FMR1
CIRBP	ENSG00000099622.9	2295.60530	3007.79670	-0.38980	4.63550	3.87970	K562	FXR1
CIRBP	ENSG00000099622.9	3312.13570	2697.37500	0.29610	2.85990	1.40040	K562	G3BP1
CIRBP	ENSG00000099622.9	1571.77220	2247.28910	-0.51580	3.73970	2.88960	K562	G3BP2
CIRBP	ENSG00000099622.9	1935.82350	2550.26000	-0.39770	4.55610	3.80870	K562	HNRNPC
CIRBP	ENSG00000099622.9	1611.87230	2274.42280	-0.49680	4.96030	2.47730	K562	HNRNPH1
CIRBP	ENSG00000099622.9	3667.73970	3065.28770	0.25880	2.04300	1.35480	K562	HSPD1
CIRBP	ENSG00000099622.9	3772.95020	2870.13410	0.39450	4.29780	2.73620	K562	IGF2BP3
CIRBP	ENSG00000099622.9	5213.66720	4397.12000	0.24560	2.63960	1.83620	K562	KIF1C
CIRBP	ENSG00000099622.9	1846.56490	2469.62760	-0.41940	4.54050	2.69660	K562	LARP7
CIRBP	ENSG00000099622.9	3847.17910	3131.43210	0.29690	5.28500	4.19320	K562	MTPAP
CIRBP	ENSG00000099622.9	3388.05100	2510.98980	0.43210	4.65110	2.59550	K562	NUSAP1
CIRBP	ENSG00000099622.9	3157.87310	2489.85310	0.34280	2.97400	1.48790	K562	PHF6
CIRBP	ENSG00000099622.9	5872.92960	4153.37950	0.49970	5.26610	3.00870	K562	PKM
CIRBP	ENSG00000099622.9	3121.89800	2566.78520	0.28240	2.27800	1.53440	K562	PPIG
CIRBP	ENSG00000099622.9	2029.66970	2689.66510	-0.40620	3.98180	3.08230	K562	PRPF8
CIRBP	ENSG00000099622.9	3637.48350	2286.57800	0.66970	12.35550	10.16810	K562	PSIP1
CIRBP	ENSG00000099622.9	3381.89880	2880.82690	0.23130	1.91040	1.34020	K562	PTBP1
CIRBP	ENSG00000099622.9	5393.41580	4108.86100	0.39240	4.35210	3.69370	K562	PUS1
CIRBP	ENSG00000099622.9	1671.34730	2146.36500	-0.36090	2.74740	1.74730	K562	RPS3
CIRBP	ENSG00000099622.9	1514.38480	1878.73060	-0.31100	2.67920	1.61680	K562	SAFB
CIRBP	ENSG00000099622.9	1886.71370	2382.61400	-0.33670	3.43640	1.62940	K562	SND1
CIRBP	ENSG00000099622.9	3808.81230	2824.26710	0.43140	3.28580	2.51900	K562	SRSF1
CIRBP	ENSG00000099622.9	3728.11710	2667.54600	0.48280	5.70280	4.08950	K562	SRSF5
CIRBP	ENSG00000099622.9	2461.01620	3178.53410	-0.36910	6.14200	4.38590	K562	SRSF7
CIRBP	ENSG00000099622.9	3531.45330	2858.13500	0.30510	2.43830	1.77130	K562	TARDBP
CIRBP	ENSG00000099622.9	3952.85830	2757.04850	0.51970	8.42730	6.88690	K562	TIA1
CIRBP	ENSG00000099622.9	3885.52570	2705.97600	0.52190	7.02740	5.08890	K562	TRA2A
CIRBP	ENSG00000099622.9	4135.39080	3689.10040	0.16470	2.14590	1.50710	K562	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CIRBP is not available on ENCORE database.

40 RBPs can affect the splicing of CIRBP :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CIRBP	ENSG00000099622.9	chr19	+	1273599	1273714			1271979	1272050	1274305	1274439	0.32800	0.00000	0.00006	included	HepG2	G3BP1
SE	CIRBP	ENSG00000099622.9	chr19	+	1271119	1271245			1270926	1271035	1271327	1271466	-0.05300	0.00000	0.00003	excluded	K562	PRPF8
SE	CIRBP	ENSG00000099622.9	chr19	+	1273492	1273714			1271979	1272050	1274305	1274443	0.47500	0.00003	0.02161	included	HepG2	DHX30
SE	CIRBP	ENSG00000099622.9	chr19	+	1272425	1272517			1271979	1272050	1274305	1274809	0.12500	0.00000	0.00000	included	HepG2	HNRNPK
SE	CIRBP	ENSG00000099622.9	chr19	+	1273599	1273714			1271979	1272050	1274305	1274439	0.43400	0.00004	0.00652	included	HepG2	TBRG4
SE	CIRBP	ENSG00000099622.9	chr19	+	1270926	1271035			1269348	1269409	1271327	1271466	0.83300	0.00099	0.01397	included	HepG2	U2AF2
SE	CIRBP	ENSG00000099622.9	chr19	+	1271119	1271245			1270926	1271035	1271327	1271466	-0.06600	0.00003	0.00069	excluded	HepG2	U2AF2
SE	CIRBP	ENSG00000099622.9	chr19	+	1272425	1272522			1271979	1272050	1274305	1274809	0.14200	0.00000	0.00000	included	HepG2	AKAP1
SE	CIRBP	ENSG00000099622.9	chr19	+	1272425	1272517			1271979	1272050	1274305	1274809	-0.28900	0.00000	0.00000	excluded	K562	AQR
SE	CIRBP	ENSG00000099622.9	chr19	+	1272425	1272517			1271979	1272050	1274305	1274809	-0.28800	0.00000	0.00000	excluded	HepG2	SRSF7
SE	CIRBP	ENSG00000099622.9	chr19	+	1272425	1272517			1271979	1272050	1274305	1274809	-0.20000	0.00000	0.00010	excluded	K562	HNRNPA1
SE	CIRBP	ENSG00000099622.9	chr19	+	1271979	1272050			1271334	1271364	1272425	1272641	-0.05400	0.00030	0.02956	excluded	K562	SUPV3L1
SE	CIRBP	ENSG00000099622.9	chr19	+	1271157	1271245			1269348	1269409	1271327	1271432	-0.11000	0.00000	0.00000	excluded	K562	SUPV3L1
SE	CIRBP	ENSG00000099622.9	chr19	+	1273492	1273714			1271979	1272050	1274305	1274443	0.41700	0.00044	0.06472	included	HepG2	HNRNPA1
SE	CIRBP	ENSG00000099622.9	chr19	+	1271138	1271245			1269335	1269409	1271327	1271466	-0.06600	0.00000	0.00000	excluded	K562	EFTUD2
SE	CIRBP	ENSG00000099622.9	chr19	+	1273487	1273714			1271979	1272050	1274305	1274580	-0.06500	0.00162	0.07266	excluded	K562	EFTUD2
SE	CIRBP	ENSG00000099622.9	chr19	+	1273599	1273714			1271979	1272050	1274305	1274439	0.46800	0.00000	0.00000	included	HepG2	MATR3
SE	CIRBP	ENSG00000099622.9	chr19	+	1273492	1273714			1271979	1272050	1274305	1274443	0.24900	0.00003	0.00601	included	HepG2	SSB
SE	CIRBP	ENSG00000099622.9	chr19	+	1272425	1272522			1271979	1272050	1274305	1274809	0.13800	0.00000	0.00000	included	HepG2	IGF2BP3
SE	CIRBP	ENSG00000099622.9	chr19	+	1272425	1272522			1271979	1272050	1274305	1274809	0.12100	0.00075	0.09999	included	K562	EIF4G2
SE	CIRBP	ENSG00000099622.9	chr19	+	1273599	1273714			1271979	1272050	1274305	1274439	-0.05300	0.00039	0.06515	excluded	K562	UPF1
SE	CIRBP	ENSG00000099622.9	chr19	+	1272425	1272522			1271979	1272050	1274305	1274809	-0.16600	0.00000	0.00004	excluded	HepG2	XRN2
SE	CIRBP	ENSG00000099622.9	chr19	+	1273492	1273714			1271979	1272050	1274305	1274443	-0.26300	0.00023	0.09878	excluded	HepG2	SLTM
SE	CIRBP	ENSG00000099622.9	chr19	+	1273492	1273714			1271979	1272050	1274305	1274443	0.20900	0.00041	0.05680	included	HepG2	KHSRP
A3SS	CIRBP	ENSG00000099622.9	chr19	+	1271138	1271466			1271327	1271466	1270926	1271035	-0.06400	0.00000	0.00000	shorter	HepG2	U2AF2
A5SS	CIRBP	ENSG00000099622.9	chr19	+	1271153	1271388			1271153	1271364	1272425	1272802	-0.09900	0.00001	0.00450	shorter	K562	SUPV3L1
A5SS	CIRBP	ENSG00000099622.9	chr19	+	1271327	1271466			1271327	1271364	1271549	1271631	0.09900	0.00008	0.04158	longer	K562	NPM1
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	0.13600	0.00009	0.01095	included	HepG2	TBRG4
RI	CIRBP	ENSG00000099622.9	chr19	+	1270926	1271466			1270926	1271035	1271327	1271466	-0.31200	0.00204	0.08333	excluded	K562	DROSHA
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	-0.13900	0.00103	0.05662	excluded	K562	DROSHA
RI	CIRBP	ENSG00000099622.9	chr19	+	1270926	1271466			1270926	1271035	1271327	1271466	0.38000	0.00090	0.02117	included	HepG2	PCBP2
RI	CIRBP	ENSG00000099622.9	chr19	+	1270926	1271466			1270926	1271035	1271327	1271466	0.14900	0.00844	0.04835	included	K562	PUS1
RI	CIRBP	ENSG00000099622.9	chr19	+	1274305	1274809			1274305	1274439	1274647	1274809	0.25100	0.00095	0.01305	included	HepG2	SF3A3
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	-0.41700	0.00000	0.00000	excluded	K562	HNRNPC
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	0.24300	0.00042	0.00437	included	HepG2	U2AF2
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	-0.17100	0.00360	0.06577	excluded	K562	SRSF1
RI	CIRBP	ENSG00000099622.9	chr19	+	1274305	1274809			1274305	1274439	1274647	1274809	-0.44700	0.00001	0.00387	excluded	K562	TIA1
RI	CIRBP	ENSG00000099622.9	chr19	+	1270926	1271466			1270926	1271035	1271327	1271466	-0.32100	0.00163	0.07004	excluded	K562	NCBP2
RI	CIRBP	ENSG00000099622.9	chr19	+	1274305	1274809			1274305	1274439	1274647	1274809	-0.36800	0.00011	0.01079	excluded	HepG2	SUPV3L1
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	-0.21900	0.00002	0.00419	excluded	K562	UPF1
RI	CIRBP	ENSG00000099622.9	chr19	+	1274305	1274809			1274305	1274439	1274647	1274809	-0.14600	0.01020	0.09061	excluded	K562	AGGF1
RI	CIRBP	ENSG00000099622.9	chr19	+	1270926	1271466			1270926	1271035	1271327	1271466	-0.31400	0.00972	0.09272	excluded	K562	PRPF8
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	0.29800	0.00000	0.00008	included	HepG2	IGF2BP3
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	0.24400	0.00008	0.00474	included	HepG2	MATR3
RI	CIRBP	ENSG00000099622.9	chr19	+	1271138	1271466			1271138	1271245	1271327	1271466	0.06500	0.00000	0.00000	included	HepG2	U2AF1
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	-0.19300	0.00016	0.01142	excluded	K562	SUPV3L1
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	0.24000	0.00000	0.00010	included	HepG2	G3BP1
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	0.20100	0.00022	0.00742	included	HepG2	KHSRP
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	-0.27600	0.00000	0.00008	excluded	K562	XRCC6
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	0.14900	0.00168	0.03063	included	HepG2	TIAL1
RI	CIRBP	ENSG00000099622.9	chr19	+	1274305	1274809			1274305	1274439	1274647	1274809	-0.32200	0.00029	0.07488	excluded	HepG2	BCLAF1
RI	CIRBP	ENSG00000099622.9	chr19	+	1270926	1271466			1270926	1271035	1271327	1271466	0.28300	0.01194	0.09876	included	HepG2	HNRNPK
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	0.26300	0.00000	0.00001	included	HepG2	HNRNPK
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	-0.15200	0.00016	0.03803	excluded	K562	HNRNPA1
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	-0.29900	0.00000	0.00071	excluded	HepG2	SRSF7
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	-0.22800	0.00000	0.00002	excluded	K562	AQR
RI	CIRBP	ENSG00000099622.9	chr19	+	1274305	1274809			1274305	1274439	1274647	1274809	-0.41200	0.00007	0.00504	excluded	K562	TARDBP
RI	CIRBP	ENSG00000099622.9	chr19	+	1271979	1274439			1271979	1272050	1274305	1274439	-0.18800	0.00389	0.06206	excluded	K562	PTBP1
RI	CIRBP	ENSG00000099622.9	chr19	+	1274305	1274809			1274305	1274439	1274647	1274809	-0.40800	0.00025	0.00713	excluded	K562	PTBP1
RI	CIRBP	ENSG00000099622.9	chr19	+	1270926	1271466			1270926	1271035	1271327	1271466	-0.33500	0.00020	0.00516	excluded	K562	FXR1
MXE	CIRBP	ENSG00000099622.9	chr19	+	1271138	1271245	1271327	1271466	1270926	1271035	1271549	1271631	-0.41800	0.00000	0.00000	2included	HepG2	FTO
MXE	CIRBP	ENSG00000099622.9	chr19	+	1271138	1271245	1271327	1271466	1270926	1271035	1271549	1271631	-0.08500	0.00000	0.00000	2included	K562	SRSF1
MXE	CIRBP	ENSG00000099622.9	chr19	+	1271138	1271245	1271327	1271466	1270926	1271035	1271549	1271631	-0.17400	0.00000	0.00000	2included	HepG2	DDX55
MXE	CIRBP	ENSG00000099622.9	chr19	+	1270865	1271035	1271327	1271364	1269330	1269409	1271549	1271631	0.23100	0.00001	0.00640	1included	K562	NPM1
MXE	CIRBP	ENSG00000099622.9	chr19	+	1270865	1271015	1271327	1271388	1269329	1269409	1274305	1274809	-0.23000	0.00055	0.01541	2included	K562	SUPV3L1
MXE	CIRBP	ENSG00000099622.9	chr19	+	1270865	1271035	1271327	1271364	1269330	1269409	1271549	1271631	0.17600	0.00204	0.03682	1included	K562	HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CIRBP

General Information

Functions

Localization

Domains (AlphaFold: CIRBP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CIRBP is not avaliable on ENCORE database.

41 proteins are bound to CIRBP RNA:

eCLIP assay for CIRBP is not avaliable on ENCORE database.

Diffrential Expression

6,478 differentially expressed genes after Knockdown/Knockout CIRBP protein :

107 RBPs can affect the gene expression of CIRBP :

The Knockdown/knockout RNA-Seq assay for CIRBP is not available on ENCORE database.

40 RBPs can affect the splicing of CIRBP :

The Knockdown/knockout RNA-Seq assay for CIRBP is not avaliable on ENCORE database.