ARF5

General Information

Gene Name       : ARF5
Gene ID             : ENSG00000004059.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ARF5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ARF5ENSG00000004059.1050.5158.6254.56ENCSR000AEF
HepG2ARF5ENSG00000004059.10123.8391.76107.80ENCSR985KAT
K562ARF5ENSG00000004059.10122.7781.81102.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ARF5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ARF5 RNA is bound by 25 proteins.  







eCLIP assay for ARF5 is not avaliable on ENCORE database.





25 proteins are bound to ARF5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7127231644127231712+3'-UTR4.3035020.67473HepG2PRPF4
chr7127231644127231704+3'-UTR4.4050724.35359HepG2TIAL1
chr7127231645127231726+3'-UTR4.8332623.66552HepG2TIA1
chr7127231652127231726+3'-UTR3.251527.29350HepG2FAM120A
chr7127231475127231573+3'-UTR3.5314022.11954HepG2DDX55
chr7127231493127231557+3'-UTR4.9812213.40011HepG2SUB1
chr7127231441127231556+3'-UTR5.150299.16654HepG2UPF1
chr7127231649127231737+3'-UTR,polyA_signal4.1603775.78840K562PABPC4
chr7127231642127231733+3'-UTR4.0981921.22061K562UPF1
chr7127231463127231501+3'-UTR3.9503149.07412K562PABPC4
chr7127231645127231736+3'-UTR,polyA_signal3.9611423.77819K562LARP4
chr7127231653127231713+3'-UTR3.271195.25426HepG2PCBP2
chr7127231650127231735+3'-UTR,polyA_signal3.74011400.00000K562TIA1
chr7127231651127231726+3'-UTR3.0285011.52218HepG2DDX6
chr7127231474127231569+3'-UTR3.7225024.00443K562DDX6
chr7127231644127231709+3'-UTR4.1221219.34050HepG2DDX55
chr7127231462127231613+3'-UTR4.6500418.60488K562PCBP1
chr7127231646127231714+3'-UTR3.6659113.72317K562CPEB4
chr7127231645127231735+3'-UTR,polyA_signal3.8589354.66977K562DDX6
chr7127231649127231738+3'-UTR,polyA_signal3.712427.85297K562APOBEC3C
chr7127231441127231500+3'-UTR3.1305616.46615K562DDX55
chr7127231457127231510+3'-UTR3.4857822.58186K562TIA1
chr7127231647127231722+3'-UTR3.4292816.89891K562FASTKD2
chr7127231641127231714+3'-UTR4.6538214.61601HepG2UPF1
chr7127231643127231730+3'-UTR4.2770619.37664HepG2LARP4
chr7127231505127231565+3'-UTR4.9631246.41760K562PABPC4
chr7127231647127231726+3'-UTR3.240734.48801HepG2RBFOX2
chr7127231469127231558+3'-UTR3.7901619.52972HepG2LARP4
chr7127228454127228533+5'-UTR3.375115.34452K562PCBP1
chr7127228456127228503+5'-UTR4.478247.63030HepG2DDX3X
chr7127228464127228557+5'-UTR,CDS4.4090312.98309K562DDX3X
chr7127228503127228568+5'-UTR,CDS5.5849518.21641HepG2DDX3X
chr7127230101127230147+CDS,intron-Proximal3.560864.65237HepG2U2AF2
chr7127229214127229217+CDS3.9361513.55292K562YBX3
chr7127229135127229176+CDS,intron-Proximal3.1587116.90696K562DDX3X
chr7127231267127231288+CDS3.414674.70209K562YBX3
chr7127230093127230155+CDS,intron-Proximal3.4677512.24675K562PRPF8
chr7127229134127229218+CDS,intron-Proximal3.4486410.36528K562FTO
chr7127229646127229665+CDS,intron-Proximal3.535718.62380K562PRPF8
chr7127229538127229547+CDS,intron-Proximal4.3038917.92515K562YBX3
chr7127230097127230174+CDS,intron-Proximal3.715219.70941HepG2PRPF8
chr7127230115127230191+CDS,intron-Proximal3.632456.13978HepG2PPIG
chr7127230102127230131+CDS,intron-Proximal4.9847210.10245K562U2AF2
chr7127228568127228620+CDS,intron-Proximal5.110885.35746HepG2DDX3X
chr7127229136127229167+CDS,intron-Proximal4.534263.32488HepG2DDX3X
chr7127229637127229688+CDS,intron-Proximal4.539799.68645HepG2AQR
chr7127229607127229631+CDS3.260057.19068K562YBX3
chr7127229647127229682+CDS,intron-Proximal6.6093654.69331K562AQR
chr7127228557127228620+CDS,intron-Proximal3.9684720.38397K562DDX3X
chr7127231063127231101+CDS5.3316612.54578K562YBX3
chr7127229550127229554+CDS4.3617114.77508K562YBX3
chr7127229143127229215+CDS3.9478318.82161K562PUM2
chr7127230088127230188+CDS,intron-Proximal5.7570254.97453K562AQR
chr7127229199127229214+CDS3.6786612.74581K562YBX3
chr7127228608127228617+CDS3.730256.09386K562DDX55
chr7127230083127230211+CDS,intron-Proximal3.374316.32386HepG2AQR
chr7127229647127229708+CDS,intron-Proximal3.335208.46497K562BUD13
chr7127229647127229658+CDS,intron-Proximal4.319037.56654HepG2PRPF8
chr7127229560127229607+CDS3.5792916.30734K562YBX3
chr7127229765127229843+intron-Distal3.995628.82110K562PRPF8
chr7127229691127229739+intron-Proximal5.7245519.39840K562AQR
chr7127230086127230088+intron-Proximal6.2108113.18785K562AQR
chr7127229658127229741+intron-Proximal4.8279916.45654HepG2PRPF8
chr7127229682127229691+intron-Proximal7.0807454.47108K562AQR
chr7127229665127229689+intron-Proximal4.1028810.26009K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ARF5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ARF5 is not available on ENCORE database.

  • 92 RBPs can affect the levels of ARF5.  








The Knockdown/knockout RNA-Seq assay for ARF5 is not available on ENCORE database.





92 RBPs can affect the gene expression of ARF5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ARF5ENSG00000004059.6413.75910634.89620-0.617705.108903.69230HepG2AATF
ARF5ENSG00000004059.61104.31160834.068800.404805.465204.66720HepG2ACO1
ARF5ENSG00000004059.61101.26890666.730700.723904.050202.91730HepG2BCCIP
ARF5ENSG00000004059.61565.335001262.149900.310502.096501.41730HepG2CIRBP
ARF5ENSG00000004059.6878.76390584.031900.589303.139802.32150HepG2CNOT7
ARF5ENSG00000004059.61246.80630996.469800.323202.624401.99640HepG2CELF1
ARF5ENSG00000004059.61184.68760771.336900.6190012.7722011.25690HepG2DDX19B
ARF5ENSG00000004059.6842.75810670.115300.330602.670701.53330HepG2DDX1
ARF5ENSG00000004059.6928.38140699.828900.407603.228202.49920HepG2DDX21
ARF5ENSG00000004059.6972.61650657.067400.565707.641906.52020HepG2DNAJC21
ARF5ENSG00000004059.6922.51280651.354600.502007.753106.73390HepG2DNAJC2
ARF5ENSG00000004059.61121.53450799.540700.488103.716802.66030HepG2EEF2
ARF5ENSG00000004059.6436.30440644.89750-0.563702.729001.63160HepG2AGO1
ARF5ENSG00000004059.61752.860601403.512900.320601.845801.31930HepG2EIF4A3
ARF5ENSG00000004059.61002.06510814.923600.298102.107101.37970HepG2EWSR1
ARF5ENSG00000004059.6632.521601293.91740-1.0326019.0636017.08600HepG2FUBP3
ARF5ENSG00000004059.6522.670101313.69810-1.3297021.7499019.95910HepG2G3BP1
ARF5ENSG00000004059.6820.88270577.774700.506603.697802.64760HepG2GEMIN5
ARF5ENSG00000004059.61043.06820796.221400.389504.699003.45820HepG2HDGF
ARF5ENSG00000004059.61051.41140663.363200.664407.775506.77510HepG2HNRNPA1
ARF5ENSG00000004059.61027.28880737.898600.477202.911302.20180HepG2HNRNPC
ARF5ENSG00000004059.6710.275601330.45520-0.9055013.0375011.62630HepG2HNRNPK
ARF5ENSG00000004059.61203.81390975.948300.302603.860303.07290HepG2HNRNPL
ARF5ENSG00000004059.61168.74020733.017900.6729010.345209.23420HepG2HNRNPU
ARF5ENSG00000004059.61125.16320900.316400.321502.648601.93910HepG2IGF2BP1
ARF5ENSG00000004059.6923.76150748.748400.302903.385202.58050HepG2ILF2
ARF5ENSG00000004059.6892.84840673.741200.406102.698301.50440HepG2LIN28B
ARF5ENSG00000004059.6996.732101416.75750-0.507304.196803.39190HepG2MAGOH
ARF5ENSG00000004059.61335.661501062.400700.330103.312202.47920HepG2NOL12
ARF5ENSG00000004059.6747.18500479.234700.640603.598001.95960HepG2NOLC1
ARF5ENSG00000004059.6910.65210725.525100.327803.129402.23330HepG2PARN
ARF5ENSG00000004059.6983.790801321.72580-0.426006.218305.36420HepG2PCBP1
ARF5ENSG00000004059.6700.02910536.682300.383202.839801.59280HepG2PKM
ARF5ENSG00000004059.6945.83970653.788200.532706.780705.66780HepG2PPIL4
ARF5ENSG00000004059.6695.83150870.05850-0.322403.121602.30500HepG2PRPF4
ARF5ENSG00000004059.6989.456601344.86630-0.442806.493405.72420HepG2PTBP1
ARF5ENSG00000004059.61334.143001014.168200.395503.679303.00360HepG2PUF60
ARF5ENSG00000004059.61103.635601456.60670-0.400304.673803.89340HepG2QKI
ARF5ENSG00000004059.6324.86790689.42020-1.085507.263906.15090HepG2RAVER1
ARF5ENSG00000004059.61600.906801306.110900.293502.961502.43080HepG2RBM22
ARF5ENSG00000004059.61049.411201321.93270-0.333102.898102.21050HepG2RBM25
ARF5ENSG00000004059.6967.28460713.741400.438402.951002.12620HepG2RPS2
ARF5ENSG00000004059.6782.57220586.641200.415602.093101.39650HepG2RPS3A
ARF5ENSG00000004059.6353.54530499.86050-0.499602.021201.33950HepG2RRP9
ARF5ENSG00000004059.6839.10260652.767400.362202.708702.06950HepG2SAFB2
ARF5ENSG00000004059.61907.385301192.756300.677203.886803.08120HepG2SF3A3
ARF5ENSG00000004059.61174.44540900.146900.383602.898202.17600HepG2SF3B1
ARF5ENSG00000004059.61170.85010972.462200.267703.043302.31180HepG2SLBP
ARF5ENSG00000004059.61974.356801475.170400.420407.493206.77920HepG2SRFBP1
ARF5ENSG00000004059.61144.520001461.52870-0.352703.111102.61750HepG2SRSF1
ARF5ENSG00000004059.61183.145601001.362600.240602.288701.71260HepG2SRSF5
ARF5ENSG00000004059.6804.922001189.00680-0.5628010.054009.11710HepG2SRSF9
ARF5ENSG00000004059.61577.991301280.738100.301003.633403.06320HepG2SSB
ARF5ENSG00000004059.61359.255501138.808700.255202.998502.35540HepG2SUCLG1
ARF5ENSG00000004059.6902.683801313.59960-0.541207.907507.03840HepG2TAF15
ARF5ENSG00000004059.6788.043001207.10330-0.615208.494507.03890HepG2TIA1
ARF5ENSG00000004059.6929.10000712.152600.383503.460402.91440HepG2TIAL1
ARF5ENSG00000004059.61066.30730718.638100.569209.261608.32230HepG2TRIM56
ARF5ENSG00000004059.61257.52610990.825700.343803.015302.09870HepG2TUFM
ARF5ENSG00000004059.61033.75520597.218700.791502.748701.74760HepG2UPF2
ARF5ENSG00000004059.61269.601801021.260300.313902.939102.32500HepG2UTP3
ARF5ENSG00000004059.61243.16220642.351000.952508.617707.35410HepG2XRN2
ARF5ENSG00000004059.6731.61110858.65780-0.231001.947801.36900HepG2ZC3H8
ARF5ENSG00000004059.61608.990901163.371000.467709.216308.36720HepG2ZNF622
ARF5ENSG00000004059.64280.213502562.140900.7402027.6924026.00200K562AGGF1
ARF5ENSG00000004059.64091.043902815.406200.539007.762805.88580K562AKAP8
ARF5ENSG00000004059.63834.996002666.023900.524405.178304.27190K562AKAP8L
ARF5ENSG00000004059.61660.683201346.982900.301902.738401.70120K562DDX3X
ARF5ENSG00000004059.63369.541202868.831700.232002.814101.93170K562DKC1
ARF5ENSG00000004059.61602.338001228.428600.383304.465202.76320K562EWSR1
ARF5ENSG00000004059.62834.299701634.079300.7944012.9440010.97390K562FIP1L1
ARF5ENSG00000004059.61342.752401688.13520-0.330202.517001.70180K562FMR1
ARF5ENSG00000004059.6383.48220745.58930-0.959208.681407.28550K562G3BP2
ARF5ENSG00000004059.61260.177901584.00680-0.330002.715201.92800K562GPKOW
ARF5ENSG00000004059.63128.399702415.054600.373304.180903.25440K562GRSF1
ARF5ENSG00000004059.6774.547001158.15890-0.580405.294303.54510K562HNRNPK
ARF5ENSG00000004059.62282.869401343.969400.764209.392907.47230K562HNRNPM
ARF5ENSG00000004059.61757.505501160.304700.598903.081901.97830K562IGF2BP2
ARF5ENSG00000004059.63570.941402829.317200.335803.851602.85570K562KIF1C
ARF5ENSG00000004059.61004.856701352.59490-0.428702.625301.71870K562KRR1
ARF5ENSG00000004059.63708.577702708.353200.453406.027804.21500K562MAK16
ARF5ENSG00000004059.61516.291401216.300200.317902.400301.54730K562MATR3
ARF5ENSG00000004059.62879.353602221.625000.374002.336301.54170K562NAA15
ARF5ENSG00000004059.61429.130001002.152000.511904.294702.58460K562NONO
ARF5ENSG00000004059.63481.983702380.165600.548702.442801.52640K562PABPN1
ARF5ENSG00000004059.62520.349801854.881800.442204.138303.10880K562PPIG
ARF5ENSG00000004059.61320.73850989.236500.416903.192102.38600K562PRPF8
ARF5ENSG00000004059.62847.236803493.66150-0.295202.966501.85750K562PUM1
ARF5ENSG00000004059.64427.452502643.963300.743704.674303.99230K562PUS1
ARF5ENSG00000004059.63817.683702576.144700.5674012.3161011.06920K562RBM15
ARF5ENSG00000004059.61197.72960892.441700.424403.103102.03710K562RPS3
ARF5ENSG00000004059.61884.729101454.969000.373302.990701.91320K562SRFBP1
ARF5ENSG00000004059.61518.670601161.016500.387302.629801.93860K562SRSF1
ARF5ENSG00000004059.61161.09310861.430400.430603.880202.60390K562SRSF4
ARF5ENSG00000004059.61402.934201096.652200.355202.837201.77250K562SRSF5
ARF5ENSG00000004059.61539.711001174.885500.390003.175602.41750K562TARDBP
ARF5ENSG00000004059.61525.830101133.346200.428904.722603.60930K562TIA1
ARF5ENSG00000004059.61549.223401112.478600.477704.799003.28740K562TRA2A
ARF5ENSG00000004059.62429.787502901.46710-0.256002.059901.32700K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ARF5 is not available on ENCORE database.





3 RBPs can affect the splicing of ARF5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSARF5ENSG00000004059.6chr7+127229538127230191127230119127230191127229136127229217-0.074000.000280.01360shorterHepG2U2AF1
RIARF5ENSG00000004059.6chr7+1272289901272292171272289901272289991272291361272292170.577000.000480.00350includedK562AQR
RIARF5ENSG00000004059.6chr7+1272295381272301911272295381272296481272301191272301910.079000.000000.00000includedK562AQR
MXEARF5ENSG00000004059.6chr7+1272291361272292171272295381272296481272284561272286191272301191272301910.105000.000280.012301includedK562UCHL5

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ARF5 is not avaliable on ENCORE database.