APOBEC3C

General Information

Gene Name       : APOBEC3C
Gene ID             : ENSG00000244509.3
Essential Gene : No

Functions

Localization

Domains (AlphaFold: APOBEC3C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878APOBEC3CENSG00000244509.390.48114.49102.48ENCSR000AEF
HepG2APOBEC3CENSG00000244509.316.5717.1716.87ENCSR985KAT
K562APOBEC3CENSG00000244509.385.6178.2981.95ENCSR000AEO

Assays

4 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 374ENCSR739VVTAPOBEC3CK562ReleasedENCAB529HWMENCSR382QLC  
knockdown followed by RNA-seq APOBEC3C-BGKLV25-K562ENCSR963RLKAPOBEC3CK562ReleasedENCSR620PUP   shRNAKD% = 100.0,100.0
knockdown followed by RNA-seq APOBEC3C-BGHLV22-HepG2ENCSR012DAFAPOBEC3CHepG2ReleasedENCSR279HMU   shRNAKD% = 59.0,68.1
RNA Bind-n-SeqRBNS: APOBEC3CENCSR472KKUAPOBEC3Ccell-free sampleReleasedENCSR588UHH  






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
APOBEC3C374K562ENCSR739VVTENCSR382QLCENCAB529HWMGTX10216440968ReleasedENCODE4


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
APOBEC3CENCAB529HWMGTX10216440968Released, ENCODE3BGHLV22-3, Released, ENCODE3BGKLV25-3, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
APOBEC3CK562shRNAENCSR963RLKENCSR620PUPAPOBEC3C_BGKLV25-3,APOBEC3C_BGKLV25-4NT_BGKLV25-1,NT_BGKLV25-2100.0,100.0ReleasedENCODE3
APOBEC3CHepG2shRNAENCSR012DAFENCSR279HMUAPOBE-BGHLV22-3_17748,APOBE-BGHLV22-4_17749non-target-BGHLV22-1_17746,non-target-BGHLV22-2_1774759.0,68.1ReleasedENCODE3


  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
APOBEC3CAPOBEC3CReleasedENCODE4


  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
APOBEC3CProduct_ID: GTX102164
Lot_ID: 40968
Source: GeneTex
Target Name: APOBEC3C-human		 APOBEC3C_Secondary_Western.png<br>Caption: Western blot following shRNA against APOBEC3C in K562 or HepG2 whole cell lysate using APOBEC3C specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNA against APOBEC3C. Lanes 5-7 follow the same pattern, but in HepG2. APOBEC3C protein appears as the green band, Tubulin serves as a control and appears in red.
 k562_genetex_GTX102164_40968_APOBEC3C.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using APOBEC3C specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 10% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal Anti-APOBEC3C antibody (lanes under 'APOBEC3C'). This antibody passes preliminary validation and will be further pursued for primary and secondary validation
 APOBEC3C_Secondary_Western.png<br>Caption: Western blot following shRNA against APOBEC3C in K562 or HepG2 whole cell lysate using APOBEC3C specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNA against APOBEC3C. Lanes 5-7 follow the same pattern, but in HepG2. APOBEC3C protein appears as the green band, Tubulin serves as a control and appears in red.








RNA Targets
  • APOBEC3C protein binds to 968 RNA regions.  




  • The binding motifs of APOBEC3C

    • Trulli

Proteins bound to RNA
  • APOBEC3C RNA is bound by 16 proteins.  






APOBEC3C protein has 968 RNA targets:

Only display 100 entries as example. Please click "View All" button to see all 968 entries.     

RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
APOBEC3Cchr107403534674035421+3.470063.63922K562DDIT43'-UTR
APOBEC3Cchr63149813631498211-3.9591910.34321K562DDX39B, ATP6V1G2-DDX39B3'-UTR,intron-Distal
APOBEC3Cchr203428872034288750+3.819034.88797K562ROMO13'-UTR,CDS
APOBEC3Cchr14609333046093391-4.403183.08171K562GPBP1L13'-UTR,intron-Distal
APOBEC3Cchr3179306069179306186+3.195673.37451K562ACTL6A3'-UTR
APOBEC3Cchr181920372219203777+4.043243.34382K562SNRPD13'-UTR,CDS,intron-Distal,intron-Proximal
APOBEC3Cchr111842532518425360+3.0239314.39237K562LDHA3'-UTR,CDS,intron-Proximal
APOBEC3Cchr163120271931202747+3.3497313.19710K562FUS3'-UTR,CDS,intron-Proximal
APOBEC3Cchr16447736447843+7.7841254.12206K562NME45'-UTR,intron-Distal,intron-Proximal
APOBEC3Cchr9100777644100777689+3.211159.11449K562ANP32BCDS,intron-Proximal
APOBEC3Cchr125655375956553781+3.3738510.67753K562MYL6CDS,intron-Proximal
APOBEC3Cchr114772831477378-3.732499.66665K562SSU723'-UTR,intron-Distal
APOBEC3Cchr193613926336139305+3.4346910.56549K562COX6B15'-UTR
APOBEC3Cchr223834973638349808+3.261294.25476K562POLR2F5'-UTR,CDS,intron-Distal
APOBEC3Cchr205760535757605454-3.540977.85297K562ATP5E3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal
APOBEC3Cchr1173837097173837124-3.4393119.66679K562GAS5intron-Distal,intron-Proximal
APOBEC3Cchr129625910096259152+3.295325.22473K562SNRPFCDS,intron-Distal,intron-Proximal
APOBEC3Cchr5314760314814+4.460924.41043K562PDCD6, AHRR3'-UTR,intron-Distal
APOBEC3Cchr195019160250191647+4.335723.34382K562PRMT13'-UTR
APOBEC3Cchr79905686099056886-3.4961611.30791K562PTCD1, ATP5J2-PTCD1, ATP5J2CDS,intron-Distal
APOBEC3Cchr63163566731635720+3.666467.46892K562CSNK2B-LY6G5B-1181, CSNK2BCDS
APOBEC3Cchr222011447720114519+3.491958.28500K562RANBP13'-UTR,CDS,intron-Proximal
APOBEC3Cchr10106027053106027176+3.803179.43142K562GSTO13'-UTR,CDS
APOBEC3Cchr1911483711148482-4.528955.43716K562SBNO2intron-Distal
APOBEC3Cchr1152908515290863-3.4188440.18057K562HBE1, HBG2CDS,intron-Distal
APOBEC3Cchr1203823139203823185+3.999513.08171K562ZC3H11A3'-UTR
APOBEC3Cchr79905679299056857-3.2449514.14372K562ATP5J2, PTCD1, ATP5J2-PTCD1CDS,intron-Distal,intron-Proximal
APOBEC3Cchr173691866236918743+3.8964611.11900K562PSMB33'-UTR,CDS,intron-Proximal
APOBEC3Cchr1117740181774110-3.321443.77414K562CTSD, RP11-295K3.13'-UTR,intron-Distal
APOBEC3Cchr48373994883740031-4.0004114.03285K562SEC31A3'-UTR,intron-Distal
APOBEC3Cchr7100276571100276645+3.596256.92895K562GNB23'-UTR
APOBEC3Cchr177622039376220447+3.154435.32782K562BIRC53'-UTR
APOBEC3Cchr222011473520114803+3.4687627.92281K562RANBP13'-UTR
APOBEC3Cchr195470502654705038+4.0228443.79555K562RPS95'-UTR,intron-Proximal
APOBEC3Cchr224230319942303266+4.403189.31920K562SREBF23'-UTR
APOBEC3Cchr168887647788876525-3.121893.50415K562APRT3'-UTR,CDS,intron-Distal,intron-Proximal
APOBEC3Cchr174846007748460135-3.510694.44552K562LRRC593'-UTR,intron-Distal
APOBEC3Cchr147817451178174552+3.123474.25476K562SLIRPCDS,intron-Proximal
APOBEC3Cchr1914350881435132+5.8309911.88773K562DAZAP13'-UTR
APOBEC3Cchr33303837833038430-4.060713.64914K562GLB13'-UTR,intron-Distal
APOBEC3Cchr1228333211228333309+4.374723.34382K562GUK13'-UTR,5'-UTR,CDS,intron-Proximal
APOBEC3Cchr158944234189442403-4.097717.03647K562MFGE83'-UTR,intron-Distal
APOBEC3Cchr82343261323432680+3.403184.08506K562SLC25A37, FP157373'-UTR
APOBEC3Cchr147793574277935794+4.195673.60623K562AHSA13'-UTR
APOBEC3Cchr147818213778182205+3.811754.80893K562SLIRP3'-UTR,CDS,intron-Distal
APOBEC3Cchr1226548610226548653-3.149704.49644K562PARP13'-UTR,intron-Distal
APOBEC3CchrX4883020348830282-3.265636.68298K562GRIPAP13'-UTR,intron-Distal
APOBEC3CchrX153063783153063791+3.560713.19473K562SSR4CDS,intron-Proximal
APOBEC3Cchr214533806945338199+4.714043.64914K562AGPAT3intron-Distal
APOBEC3Cchr63455555334555608-3.311365.70735K562C6orf1063'-UTR,intron-Distal
APOBEC3Cchr111452666314526705-4.403184.02861K562PSMA13'-UTR,intron-Distal,intron-Proximal
APOBEC3Cchr22729419327294212-4.204203.34382K562OST45'-UTR,intron-Distal,intron-Proximal
APOBEC3Cchr2198351341198351388-3.514384.08506K562HSPD13'-UTR,intron-Distal
APOBEC3CchrX4744607647446167+3.224848.32125K562TIMP13'-UTR,CDS
APOBEC3Cchr6160199798160199878+4.629773.27240K562ACAT23'-UTR,CDS
APOBEC3Cchr214054739840547502-4.961915.95623K562PSMG13'-UTR,intron-Distal,intron-Proximal
APOBEC3Cchr1152897785289806-3.7072955.41090K562HBG2, HBE1CDS,intron-Distal
APOBEC3Cchr8101734099101734103-3.39081400.00000K562PABPC13'-UTR,5'-UTR,intron-Distal
APOBEC3CchrX119005848119005914+3.1914112.05620K562NDUFA15'-UTR,CDS
APOBEC3Cchr5140025114140025184-5.333957.23527K562NDUFA23'-UTR,CDS,intron-Distal
APOBEC3Cchr6150123356150123473+3.306866.97623K562PCMT1CDS
APOBEC3Cchr1228682432228682500+3.8271210.88983K562RNF1873'-UTR
APOBEC3Cchr9127624187127624191-4.1821023.35409K562RPL35CDS,intron-Distal
APOBEC3CchrX102930631102930659-4.0478614.06476K562MORF4L23'-UTR,intron-Distal
APOBEC3Cchr10105156165105156198-3.261293.37451K562USMG55'-UTR,intron-Distal
APOBEC3Cchr19330744893307475+3.356633.67652K562RPL53'-UTR
APOBEC3Cchr168871351688713583-3.626005.88546K562CYBACDS,intron-Distal
APOBEC3Cchr116234130262341333-3.0227931.62231K562MIR3654, EEF1G3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal
APOBEC3Cchr125655214156552189+4.0633211.66456K562MYL6B, MYL65'-UTR,CDS,intron-Distal,intron-Proximal
APOBEC3Cchr63325767033257697+5.4377711.02823K562PFDN6CDS
APOBEC3Cchr194999969349999728+3.70929400.00000K562RPS115'-UTR,CDS
APOBEC3Cchr116244504962445104-4.291993.60623K562UBXN1CDS,intron-Distal,intron-Proximal
APOBEC3Cchr125406635854066391-3.169439.50203K562ATP5G25'-UTR,CDS,intron-Distal,intron-Proximal
APOBEC3Cchr3141644513141644588+3.013464.18209K562ATP1B33'-UTR,CDS
APOBEC3Cchr177316394073163964-3.682674.44552K562HN1, SUMO23'-UTR,intron-Distal,intron-Proximal
APOBEC3Cchr206073543060735518+5.043245.56712K562SS18L1intron-Distal
APOBEC3Cchr149258384192583952-3.390193.91821K562NDUFB1CDS,intron-Distal,intron-Proximal
APOBEC3Cchr63317208433172134+3.896725.54337K562SLC39A73'-UTR
APOBEC3Cchr171634490316344959+3.0259445.06718K562C17orf76-AS1intron-Distal
APOBEC3Cchr6166733587166733697-4.271674.13104K562SFT2D13'-UTR,intron-Distal,intron-Proximal
APOBEC3Cchr191080022510800286+3.966199.25045K562ILF33'-UTR
APOBEC3Cchr1922732082273247+4.429536.67531K562OAZ13'-UTR
APOBEC3Cchr3186507698186507756-4.490538.47309K562RFC43'-UTR,intron-Distal
APOBEC3Cchr14104378941104378998-3.381947.71511K562C14orf23'-UTR,intron-Distal
APOBEC3Cchr168870991488709980-3.034154.23726K562CYBACDS,intron-Distal,intron-Proximal
APOBEC3Cchr81170186011701899-4.218214.13104K562CTSB3'-UTR,intron-Distal,intron-Proximal
APOBEC3Cchr5179155591179155596+4.234673.86870K562CANX3'-UTR,CDS,intron-Distal,intron-Proximal
APOBEC3Cchr191839057218390652-3.291197.18983K562JUND3'-UTR
APOBEC3Cchr194095378940953871-3.4057413.43740K562BLVRB3'-UTR,CDS,intron-Distal
APOBEC3Cchr1912589051258968+3.250764.89563K562MIDN3'-UTR
APOBEC3Cchr125643620756436231+3.052613.86182K562RPS26CDS,intron-Proximal
APOBEC3Cchr174046535340465401-3.543245.95517K562STAT33'-UTR,intron-Distal
APOBEC3Cchr111842699418427055+3.3628418.46713K562LDHA3'-UTR,CDS,intron-Distal,intron-Proximal
APOBEC3Cchr173417390934173938+3.286963.72790K562TAF15CDS,intron-Distal,intron-Proximal
APOBEC3Cchr178001580380015948-4.253404.39312K562DUS1L3'-UTR,CDS,intron-Distal,intron-Proximal
APOBEC3Cchr111081910010819208-3.4911916.40793K562EIF4G23'-UTR,intron-Distal,intron-Proximal
APOBEC3Cchr157857570778575864-4.195673.60623K562WDR613'-UTR,CDS,intron-Distal,intron-Proximal
APOBEC3Cchr154501026845010321+3.790744.16027K562B2M3'-UTR,intron-Distal
APOBEC3Cchr2232576653232576693+3.1087911.70137K562PTMA3'-UTR,CDS
APOBEC3Cchr125643714556437165+3.644265.71161K562RPS26CDS,intron-Proximal




16 proteins are bound to APOBEC3C RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223941621839416261+3'-UTR,intron-Distal4.166813.02541K562IGF2BP2
chr223941504539415099+3'-UTR,intron-Distal4.2926841.19149K562UPF1
chr223941474639414801+3'-UTR,intron-Distal5.1899614.80429HepG2UPF1
chr223941517739415228+3'-UTR,intron-Distal4.5094620.87273K562UPF1
chr223941599039416097+3'-UTR,intron-Distal3.002553.17663HepG2AKAP1
chr223941505639415082+3'-UTR,intron-Distal3.8725310.70139K562FAM120A
chr223941527039415337+3'-UTR,intron-Distal5.6855414.88045K562IGF2BP1
chr223941533839415368+3'-UTR,intron-Distal3.094159.04859K562FAM120A
chr223941539139415435+3'-UTR,intron-Distal4.1524315.64327K562UPF1
chr223941503239415135+3'-UTR,intron-Distal3.0903221.79847K562PUM2
chr223941468639414740+3'-UTR,intron-Distal3.8933512.87392K562PABPC4
chr223941458839414698+3'-UTR,intron-Distal4.513365.38389HepG2PCBP2
chr223941474839414852+3'-UTR,intron-Distal3.922713.05053K562DROSHA
chr223941582339415907+3'-UTR,intron-Distal4.625569.30447HepG2UPF1
chr223941463039414780+3'-UTR,intron-Distal3.6508729.39113K562QKI
chr223941512039415168+3'-UTR,intron-Distal3.505337.59764K562IGF2BP2
chr223941484939414893+3'-UTR,intron-Distal4.8103821.11344K562UPF1
chr223941486139414932+3'-UTR,intron-Distal4.213283.19379HepG2AKAP1
chr223941474639414796+3'-UTR,intron-Distal6.1528844.99707K562UPF1
chr223941611739416142+3'-UTR,intron-Distal3.9341811.88509K562UPF1
chr223941531239415336+3'-UTR,intron-Distal3.368725.09613K562IGF2BP2
chr223941455439414623+3'-UTR,intron-Distal3.207125.81564K562PABPC4
chr223941448439414561+3'-UTR,intron-Distal3.2873410.58132K562IGF2BP2
chr223941541439415434+3'-UTR,intron-Distal3.461393.82829K562IGF2BP2
chr223941604239416102+3'-UTR,intron-Distal4.122414.25018HepG2STAU2
chr223941467539414746+3'-UTR,intron-Distal4.2739421.74439HepG2UPF1
chr223941440339414543+3'-UTR,intron-Distal3.211336.50122K562PCBP1
chr223941610739416151+3'-UTR,intron-Distal3.906883.25872K562IGF2BP1
chr223941511039415159+3'-UTR,intron-Distal3.357306.75417K562IGF2BP1
chr223941401939414028+3'-UTR,CDS,intron-Distal3.271827.87605K562YBX3
chr223941474239414794+3'-UTR,intron-Distal3.5843010.05167K562ILF3
chr223941508239415168+3'-UTR,intron-Distal4.1887739.73967K562FAM120A
chr223941396439414038+3'-UTR,CDS,intron-Distal3.974463.03355K562METAP2
chr223941605539416117+3'-UTR,intron-Distal4.3551825.99650K562UPF1
chr223941475339414801+3'-UTR,intron-Distal4.770355.05488HepG2QKI
chr223941619939416268+3'-UTR,intron-Distal4.282004.53890K562PCBP1
chr223941558739415615+3'-UTR,intron-Distal3.239809.95554K562UPF1
chr223941538739415448+3'-UTR,intron-Distal3.0393410.52243K562FAM120A
chr223941565839415697+3'-UTR,intron-Distal3.8408213.04606K562UPF1
chr223941598439416103+3'-UTR,intron-Distal4.8930421.41483HepG2UPF1
chr223941468739414743+3'-UTR,intron-Distal3.7297829.76917K562UPF1
chr223941467939414753+3'-UTR,intron-Distal5.3516216.61164HepG2QKI
chr223941526239415309+3'-UTR,intron-Distal3.8378519.94458K562UPF1
chr223941484239414878+3'-UTR,intron-Distal5.5334910.44987K562PABPC4
chr223941486339414950+3'-UTR,intron-Distal5.3583117.73545HepG2UPF1
chr223941509939415159+3'-UTR,intron-Distal4.7548358.87837K562UPF1
chr223941509039415152+3'-UTR,intron-Distal4.041235.09017HepG2UPF1
chr223941489339414992+3'-UTR,intron-Distal5.6228938.37259K562UPF1
chr223941467939414741+3'-UTR,intron-Distal3.416408.60968K562IGF2BP1
chr223941443439414484+3'-UTR,intron-Distal3.776848.67572K562IGF2BP2
chr223941554339415642+3'-UTR,intron-Distal4.1444227.41524K562FAM120A
chr223941592639415963+3'-UTR,intron-Distal3.8623212.46167K562UPF1
chr223941518639415224+3'-UTR,intron-Distal4.6186515.42939K562FAM120A
chr223941474039414787+3'-UTR,intron-Distal3.8664911.88113K562PABPC4
chr223941382239413857+CDS,intron-Distal3.618713.49838K562SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




No autoregularoty interactions between protein APOBEC3C and its RNA.



Diffrential Expression
  • 2,141 differentially expressed genes after Knockdown/Knockout APOBEC3C protein.  





  • 123 RBPs can affect the levels of APOBEC3C.  







2,141 differentially expressed genes after Knockdown/Knockout APOBEC3C protein :

Only display 100 entries as example. Please click "View All" button to see all 2,141 entries.     

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC7A2ENSG00000003989.126522.6893011017.59720-0.756303.648101.73970HepG2APOBEC3C
ITGA3ENSG00000005884.13127.9381036.420701.812506.878904.05520HepG2APOBEC3C
SCN4AENSG00000007314.726.845204.350502.625303.562201.67590HepG2APOBEC3C
NCAPD2ENSG00000010292.81527.979902904.94720-0.926903.771301.82840HepG2APOBEC3C
CD4ENSG00000010610.5122.3606049.942301.292703.921001.92980HepG2APOBEC3C
HIVEP2ENSG00000010818.41394.971002475.76950-0.827604.009101.99160HepG2APOBEC3C
ANLNENSG00000011426.6612.218701197.82670-0.968303.790801.84140HepG2APOBEC3C
DPEP1ENSG00000015413.5333.1845062.543602.413304.273002.16300HepG2APOBEC3C
WWTR1ENSG00000018408.102050.919604096.42070-0.998105.741203.18850HepG2APOBEC3C
CYP24A1ENSG00000019186.5815.41710460.480300.824303.494201.62910HepG2APOBEC3C
SLC7A9ENSG00000021488.871.3606011.404302.645507.702304.69630HepG2APOBEC3C
DEPDC1ENSG00000024526.12209.55490458.04370-1.128205.600003.10860HepG2APOBEC3C
RNASET2ENSG00000026297.114438.361008016.29670-0.852904.263702.15840HepG2APOBEC3C
SARSENSG00000031698.82335.121603835.81480-0.716003.185701.39550HepG2APOBEC3C
SLC4A7ENSG00000033867.121428.392302427.11930-0.764903.623201.72230HepG2APOBEC3C
UHRF1ENSG00000034063.9245.89250115.790301.086404.157602.09080HepG2APOBEC3C
RNF19AENSG00000034677.72470.543504751.65730-0.943603.235501.43360HepG2APOBEC3C
CC2D2AENSG00000048342.11111.7646050.467901.146903.068201.30900HepG2APOBEC3C
LTBP1ENSG00000049323.11182.2711040.695702.1630010.632107.34350HepG2APOBEC3C
PIK3CBENSG00000051382.41284.272702359.10640-0.877304.530302.32690HepG2APOBEC3C
FNIP2ENSG00000052795.81630.827203281.95800-1.009005.765603.19600HepG2APOBEC3C
MSMO1ENSG00000052802.81691.720803399.02860-1.006605.835803.22390HepG2APOBEC3C
FSTL4ENSG00000053108.12105.0607042.352901.310603.826201.86160HepG2APOBEC3C
CREB3L3ENSG00000060566.9251.7950085.291801.561707.630404.64290HepG2APOBEC3C
DGAT2ENSG00000062282.10484.32530246.578300.973804.337502.20600HepG2APOBEC3C
BCAS1ENSG00000064787.8140.3557047.789701.554205.602603.10860HepG2APOBEC3C
GSTO2ENSG00000065621.10109.7693036.390501.592705.077002.70200HepG2APOBEC3C
ASPMENSG00000066279.12458.901501301.16390-1.5035010.837307.46960HepG2APOBEC3C
STOML1ENSG00000067221.946.9943015.209001.627503.096501.32540HepG2APOBEC3C
PRR11ENSG00000068489.8393.22410853.05840-1.117306.021303.36380HepG2APOBEC3C
MAOBENSG00000069535.12446.80890223.628900.998504.236502.14520HepG2APOBEC3C
RORAENSG00000069667.111387.391102342.67290-0.755803.510201.63660HepG2APOBEC3C
ASNSENSG00000070669.121977.223603812.83470-0.947404.381402.23370HepG2APOBEC3C
VASH1ENSG00000071246.636.103508.125002.151603.593601.70300HepG2APOBEC3C
NTN4ENSG00000074527.7431.67060210.763701.034204.465702.28130HepG2APOBEC3C
SEMA3AENSG00000075213.655.98060137.92230-1.300904.437402.26550HepG2APOBEC3C
PAG1ENSG00000076641.419.4009066.30820-1.773104.521402.32100HepG2APOBEC3C
EDN1ENSG00000078401.6241.33550536.50530-1.152606.047703.37050HepG2APOBEC3C
SCGNENSG00000079689.960.6664016.260201.899504.388902.23860HepG2APOBEC3C
NDC80ENSG00000080986.8122.67810234.67870-0.935803.451101.59660HepG2APOBEC3C
ARG2ENSG00000081181.3854.233901926.14510-1.173004.931202.60090HepG2APOBEC3C
HSD17B2ENSG00000086696.6341.74020818.08870-1.259407.173204.26790HepG2APOBEC3C
AURKAENSG00000087586.13822.189101611.88040-0.971204.473302.28460HepG2APOBEC3C
TPX2ENSG00000088325.111237.610502615.87510-1.079704.063102.02190HepG2APOBEC3C
SLC26A3ENSG00000091138.8159.0083042.883501.890507.952304.88560HepG2APOBEC3C
BAMBIENSG00000095739.7403.78220792.80550-0.973404.649402.39990HepG2APOBEC3C
C19orf77ENSG00000095932.5103.9725035.309201.558004.753702.46780HepG2APOBEC3C
PGCENSG00000096088.121368.329002821.01800-1.043805.865803.23840HepG2APOBEC3C
GGT5ENSG00000099998.1377.1044025.562101.592703.137101.35710HepG2APOBEC3C
LGALS2ENSG00000100079.5150.0824068.900801.123103.605501.71200HepG2APOBEC3C
HMOX1ENSG00000100292.12795.10120405.938700.969804.752802.46780HepG2APOBEC3C
FOXRED2ENSG00000100350.10646.06200355.264500.862703.709401.78750HepG2APOBEC3C
CDKN3ENSG00000100526.15143.50720303.20480-1.079204.481502.28700HepG2APOBEC3C
C14orf105ENSG00000100557.547.976806.518202.879706.276803.55250HepG2APOBEC3C
PIGHENSG00000100564.4210.08380376.34030-0.841103.182701.39480HepG2APOBEC3C
SERPINA4ENSG00000100665.7940.09770487.259700.948004.579302.34900HepG2APOBEC3C
TUBB1ENSG00000101162.3955.96130427.753701.160106.509003.73240HepG2APOBEC3C
FAM83DENSG00000101447.9330.54730678.31070-1.037103.761401.82090HepG2APOBEC3C
LPIN2ENSG00000101577.53293.554105626.98530-0.772703.616901.71900HepG2APOBEC3C
SYPENSG00000102003.696.19540237.38700-1.303205.431702.97770HepG2APOBEC3C
ASB9ENSG00000102048.11146.5378028.770902.3485010.713107.38680HepG2APOBEC3C
PHF16ENSG00000102221.9276.13150547.39910-0.987204.647102.39990HepG2APOBEC3C
COTL1ENSG00000103187.6423.19040194.498501.121405.276602.85330HepG2APOBEC3C
KIAA1199ENSG00000103888.11315.99090157.607601.003404.029802.00020HepG2APOBEC3C
ANXA13ENSG00000104537.1276.8476023.359201.717904.557502.33850HepG2APOBEC3C
ABHD11ENSG00000106077.1461.4145022.288001.462203.175401.39080HepG2APOBEC3C
TSPAN13ENSG00000106537.7196.2229094.478001.054303.546401.66230HepG2APOBEC3C
KANK1ENSG00000107104.144747.007607807.84270-0.717903.250601.44280HepG2APOBEC3C
PHYHENSG00000107537.91168.46420552.810801.079705.765203.19600HepG2APOBEC3C
PALD1ENSG00000107719.857.8548010.317902.487206.150303.45470HepG2APOBEC3C
PBLDENSG00000108187.11255.6572020.064903.6714025.8932021.52540HepG2APOBEC3C
CHIC2ENSG00000109220.673.51450154.29820-1.069603.307401.47880HepG2APOBEC3C
NCAPGENSG00000109805.5237.16340489.70910-1.046003.520401.64400HepG2APOBEC3C
PPARGC1AENSG00000109819.4674.577901263.19890-0.905004.460402.28020HepG2APOBEC3C
FNBP4ENSG00000109920.82667.868404586.96460-0.781903.723501.79670HepG2APOBEC3C
SH2B3ENSG00000111252.6285.48030493.67210-0.790203.079301.31470HepG2APOBEC3C
VDRENSG00000111424.635.483807.053802.330603.878501.90170HepG2APOBEC3C
NEDD9ENSG00000111859.125446.714209703.77160-0.833204.160502.09160HepG2APOBEC3C
RBM24ENSG00000112183.10469.27080976.95870-1.057905.730803.18850HepG2APOBEC3C
ALDH5A1ENSG00000112294.81195.83830615.568000.957904.730502.45620HepG2APOBEC3C
KIAA1244ENSG00000112379.81114.728501874.04240-0.749503.376801.53540HepG2APOBEC3C
TTKENSG00000112742.5128.70160290.77460-1.175903.682001.76750HepG2APOBEC3C
MEP1AENSG00000112818.5223.2042042.388102.396508.740405.60310HepG2APOBEC3C
KIF20AENSG00000112984.7294.58730711.57290-1.272303.366301.52750HepG2APOBEC3C
NR3C1ENSG00000113580.10994.280301669.23330-0.747503.408101.55760HepG2APOBEC3C
STC2ENSG00000113739.62667.617704433.23730-0.732803.240701.43650HepG2APOBEC3C
EHHADHENSG00000113790.6957.24660466.912901.035605.246602.83310HepG2APOBEC3C
SMC4ENSG00000113810.11686.973001184.41800-0.785903.583301.69410HepG2APOBEC3C
BCL6ENSG00000113916.133141.385505628.02190-0.841204.168702.09540HepG2APOBEC3C
ECT2ENSG00000114346.9821.871901740.01540-1.082105.773103.19600HepG2APOBEC3C
NCBP2ENSG00000114503.62525.442004242.40490-0.748303.457601.59960HepG2APOBEC3C
PLSCR4ENSG00000114698.101292.381802508.56100-0.956805.184502.77580HepG2APOBEC3C
CCL20ENSG00000115009.71404.267103172.19770-1.175707.463104.51040HepG2APOBEC3C
ZAP70ENSG00000115085.9132.3140051.654901.356904.070002.02390HepG2APOBEC3C
TP53I3ENSG00000115129.9264.28800133.632200.983703.721501.79620HepG2APOBEC3C
CENPAENSG00000115163.10132.53330312.51690-1.237604.915302.58890HepG2APOBEC3C
FN1ENSG00000115414.14319061.46430558712.10230-0.808304.049602.01220HepG2APOBEC3C
FAM20BENSG00000116199.7890.783401640.94490-0.881404.349502.21220HepG2APOBEC3C
ERRFI1ENSG00000116285.814445.0113025704.11080-0.831404.275702.16330HepG2APOBEC3C
WLSENSG00000116729.955.4061011.939902.214205.117202.72260HepG2APOBEC3C
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





123 RBPs can affect the gene expression of APOBEC3C :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
APOBEC3CENSG00000244509.3749.111401075.27460-0.521505.025903.62190HepG2AATF
APOBEC3CENSG00000244509.31033.809101365.50980-0.401502.840502.22580HepG2ACO1
APOBEC3CENSG00000244509.3707.220301074.25940-0.603105.918504.53370HepG2ADAR
APOBEC3CENSG00000244509.32333.744203153.45720-0.434303.374202.79500HepG2AKAP1
APOBEC3CENSG00000244509.31261.922001610.92210-0.352302.372201.40410HepG2AKAP8
APOBEC3CENSG00000244509.3280.42420660.60690-1.236206.965804.10900HepG2APOBEC3C
APOBEC3CENSG00000244509.31149.161802609.07690-1.1830023.0733021.10570HepG2ASCC1
APOBEC3CENSG00000244509.3965.665801405.03510-0.541005.088604.30730HepG2BOP1
APOBEC3CENSG00000244509.31156.487601583.05510-0.453005.373004.34310HepG2CALR
APOBEC3CENSG00000244509.31317.057001101.646400.257602.302401.37440HepG2YBX3
APOBEC3CENSG00000244509.3785.969201544.20150-0.9743025.8066024.25210HepG2CELF1
APOBEC3CENSG00000244509.32115.054001660.411400.349104.926203.97780HepG2DAZAP1
APOBEC3CENSG00000244509.3948.050501262.76790-0.413603.585902.65130HepG2DDX19B
APOBEC3CENSG00000244509.32089.758901186.091800.8170014.0838012.69450HepG2DDX21
APOBEC3CENSG00000244509.3721.938701160.89940-0.685309.429207.77840HepG2DDX24
APOBEC3CENSG00000244509.31947.307303020.46400-0.633307.408706.43080HepG2DDX3X
APOBEC3CENSG00000244509.3951.199401464.80350-0.622903.327402.25800HepG2DDX59
APOBEC3CENSG00000244509.33469.868701723.442801.009503.871202.68310HepG2DDX5
APOBEC3CENSG00000244509.3886.649602595.36980-1.5495031.0532029.31610HepG2DDX6
APOBEC3CENSG00000244509.31346.520501043.319800.368003.126602.08700HepG2DHX30
APOBEC3CENSG00000244509.3966.507701306.34800-0.434702.892002.19960HepG2DKC1
APOBEC3CENSG00000244509.32501.983501081.714801.2097046.0684043.70130HepG2DNAJC21
APOBEC3CENSG00000244509.3714.899301072.19120-0.5848010.997609.79470HepG2DNAJC2
APOBEC3CENSG00000244509.31021.932401374.54850-0.427703.401202.38740HepG2EEF2
APOBEC3CENSG00000244509.3634.087701092.40020-0.784707.000505.26930HepG2AGO1
APOBEC3CENSG00000244509.3637.531401120.21720-0.8132012.7137010.75740HepG2EIF3G
APOBEC3CENSG00000244509.31480.723202131.49160-0.525603.798601.71540HepG2EIF3H
APOBEC3CENSG00000244509.31455.444302756.11020-0.9212012.4724011.14250HepG2EIF4A3
APOBEC3CENSG00000244509.3757.632202684.12790-1.8249033.9231031.71340HepG2EIF4B
APOBEC3CENSG00000244509.31276.986701638.08430-0.359305.023403.95140HepG2EIF4G1
APOBEC3CENSG00000244509.3793.222101772.24450-1.159807.310106.41200HepG2ETF1
APOBEC3CENSG00000244509.3929.295301334.09010-0.521603.922702.92780HepG2EWSR1
APOBEC3CENSG00000244509.31321.442302781.85840-1.0739017.3532015.78510HepG2FXR1
APOBEC3CENSG00000244509.3893.430802580.02460-1.5300024.2652022.38050HepG2G3BP1
APOBEC3CENSG00000244509.31510.072402739.75470-0.8594013.5383011.58510HepG2G3BP2
APOBEC3CENSG00000244509.31120.639501462.33880-0.384002.513101.89990HepG2GPKOW
APOBEC3CENSG00000244509.3953.361901303.49540-0.451304.127102.94850HepG2HDGF
APOBEC3CENSG00000244509.31779.622201496.128900.250202.024001.40400HepG2HNRNPF
APOBEC3CENSG00000244509.31528.948202613.80900-0.7736010.779709.48310HepG2HNRNPK
APOBEC3CENSG00000244509.32001.082301512.512400.403708.202507.09730HepG2HNRNPL
APOBEC3CENSG00000244509.32191.562201395.528000.651008.168107.14900HepG2HNRNPLL
APOBEC3CENSG00000244509.32194.858401473.252900.575002.593201.89220HepG2IGF2BP1
APOBEC3CENSG00000244509.31758.396702622.34050-0.576606.548405.55000HepG2IGF2BP2
APOBEC3CENSG00000244509.3878.858202461.75140-1.486009.360107.63630HepG2IGF2BP3
APOBEC3CENSG00000244509.3999.075801232.61550-0.303104.040203.17160HepG2ILF2
APOBEC3CENSG00000244509.31624.028201248.067200.379804.784403.45100HepG2KIF1C
APOBEC3CENSG00000244509.31209.542601752.70500-0.535103.610902.17790HepG2KRR1
APOBEC3CENSG00000244509.31188.224002782.83440-1.2277021.9286020.17430HepG2MAGOH
APOBEC3CENSG00000244509.31669.675502798.23730-0.745008.878507.80070HepG2MATR3
APOBEC3CENSG00000244509.32247.215301423.043800.659105.095803.75420HepG2MTPAP
APOBEC3CENSG00000244509.32797.122601368.530801.0312014.9704012.21200HepG2NAA15
APOBEC3CENSG00000244509.31118.282602864.01150-1.3568027.0415025.20260HepG2NCBP2
APOBEC3CENSG00000244509.3865.227001662.21570-0.942009.509406.96850HepG2NKRF
APOBEC3CENSG00000244509.31393.007401646.45970-0.241202.104101.43690HepG2NOL12
APOBEC3CENSG00000244509.3357.00460646.58270-0.856905.103403.86660HepG2PABPC1
APOBEC3CENSG00000244509.31530.284802549.94580-0.736709.451608.13540HepG2PABPC4
APOBEC3CENSG00000244509.3725.856702630.52120-1.85760112.49790109.60040HepG2PCBP1
APOBEC3CENSG00000244509.31044.897801461.29040-0.483902.786001.74180HepG2PCBP2
APOBEC3CENSG00000244509.31020.578201536.19500-0.590003.788302.37180HepG2PRPF6
APOBEC3CENSG00000244509.31136.177602676.74620-1.2363053.9153052.17620HepG2PTBP1
APOBEC3CENSG00000244509.3933.771801668.40830-0.8373027.7445026.25700HepG2PUM1
APOBEC3CENSG00000244509.3813.237601667.19290-1.0357024.4527022.57980HepG2PUM2
APOBEC3CENSG00000244509.31012.915801390.81800-0.457403.976503.26290HepG2PUS1
APOBEC3CENSG00000244509.31502.211402898.78510-0.9484027.4135025.74350HepG2QKI
APOBEC3CENSG00000244509.3401.151401410.23010-1.8137021.4599019.67600HepG2RAVER1
APOBEC3CENSG00000244509.31693.848602402.70130-0.504403.404702.46250HepG2RBM15
APOBEC3CENSG00000244509.31604.862502630.90830-0.7131012.9947011.59430HepG2RBM25
APOBEC3CENSG00000244509.3819.968201278.06210-0.640306.533905.00340HepG2RBM27
APOBEC3CENSG00000244509.31457.383701037.841300.489703.538802.33960HepG2RCC2
APOBEC3CENSG00000244509.31031.903302978.88470-1.5295081.8191079.92190HepG2NELFE
APOBEC3CENSG00000244509.3963.751902774.56560-1.5255081.7810079.44900HepG2RECQL
APOBEC3CENSG00000244509.33283.655001611.801401.0265022.5047020.94200HepG2RPLP0
APOBEC3CENSG00000244509.3949.710401385.18280-0.544503.262602.23690HepG2RPS10
APOBEC3CENSG00000244509.31900.057901085.753200.8072014.5057013.24620HepG2RPS19
APOBEC3CENSG00000244509.31506.331401089.684800.467004.421203.24430HepG2SERBP1
APOBEC3CENSG00000244509.31129.739501681.49300-0.573803.951003.13920HepG2SF3A3
APOBEC3CENSG00000244509.3856.179001381.35330-0.690106.970805.89320HepG2SF3B1
APOBEC3CENSG00000244509.31087.933402786.67240-1.3570065.8763063.73260HepG2SF3B4
APOBEC3CENSG00000244509.31243.431002908.75040-1.2261059.7334058.17930HepG2SRSF1
APOBEC3CENSG00000244509.31329.229501551.80420-0.223402.221201.65330HepG2SRSF5
APOBEC3CENSG00000244509.31748.624101469.921200.250402.649401.96820HepG2SRSF7
APOBEC3CENSG00000244509.3641.910002366.48170-1.88230115.42410113.00370HepG2SRSF9
APOBEC3CENSG00000244509.3965.728001452.84750-0.589202.902602.38070HepG2SSB
APOBEC3CENSG00000244509.31209.482501747.60160-0.531004.279902.70990HepG2SSRP1
APOBEC3CENSG00000244509.3369.23390618.12060-0.743405.485503.88710HepG2STIP1
APOBEC3CENSG00000244509.31228.684601764.83430-0.5224011.4766010.35680HepG2SUCLG1
APOBEC3CENSG00000244509.3960.208402614.68620-1.4452061.3211059.11210HepG2TAF15
APOBEC3CENSG00000244509.3972.971101716.54490-0.819004.261002.95500HepG2TBRG4
APOBEC3CENSG00000244509.3305.90590627.21920-1.0359010.115208.44830HepG2TFIP11
APOBEC3CENSG00000244509.31482.596702402.34100-0.6963012.6581010.89880HepG2TIA1
APOBEC3CENSG00000244509.32580.891101172.511601.1382035.4462034.02640HepG2TIAL1
APOBEC3CENSG00000244509.3902.896501415.93390-0.649104.663102.78760HepG2TRA2A
APOBEC3CENSG00000244509.3618.51950886.62630-0.519503.457901.70450HepG2TROVE2
APOBEC3CENSG00000244509.31146.055101535.46170-0.422004.458203.31810HepG2TUFM
APOBEC3CENSG00000244509.31059.094001625.25640-0.617805.797704.55560HepG2UBE2L3
APOBEC3CENSG00000244509.3348.11430552.79240-0.667205.139104.09650HepG2UCHL5
APOBEC3CENSG00000244509.32281.743301491.228300.613504.219803.38650HepG2UPF1
APOBEC3CENSG00000244509.31100.341901532.76580-0.478204.402503.11610HepG2UTP18
APOBEC3CENSG00000244509.3671.878301439.72060-1.0995032.7742031.06230HepG2UTP3
APOBEC3CENSG00000244509.31018.605401278.18060-0.327502.227601.61560HepG2ZC3H8
APOBEC3CENSG00000244509.31923.610201640.064100.230003.206702.63150HepG2ZNF622
APOBEC3CENSG00000244509.3637.677401408.84930-1.1436013.8167010.86760HepG2ZRANB2
APOBEC3CENSG00000244509.34454.999003541.029500.331206.169105.37360K562AGGF1
APOBEC3CENSG00000244509.3581.097404792.49410-3.04390184.23490179.83080K562APOBEC3C
APOBEC3CENSG00000244509.32199.608603760.96460-0.7739013.9490012.77550K562AQR
APOBEC3CENSG00000244509.34472.660703865.880700.210202.126201.33300K562ATP5C1
APOBEC3CENSG00000244509.33152.930302257.157400.482104.902803.40770K562CCAR1
APOBEC3CENSG00000244509.33452.366104446.67980-0.365104.713303.69270K562CPSF6
APOBEC3CENSG00000244509.31669.507102031.64190-0.283202.762701.70820K562CSTF2
APOBEC3CENSG00000244509.33242.528802526.938200.359603.089801.68180K562DHX30
APOBEC3CENSG00000244509.33307.477502508.557300.398802.729701.45990K562EEF2
APOBEC3CENSG00000244509.31540.270202183.78340-0.503606.059204.85400K562EIF4A3
APOBEC3CENSG00000244509.33643.906102732.689700.415103.700002.36970K562FKBP4
APOBEC3CENSG00000244509.33590.962804524.26320-0.333302.167301.40730K562FMR1
APOBEC3CENSG00000244509.32987.122003834.66560-0.360303.082002.11160K562FTO
APOBEC3CENSG00000244509.33458.940904245.53780-0.295602.824802.02180K562GPKOW
APOBEC3CENSG00000244509.33150.643604573.60260-0.537708.720907.35870K562GRSF1
APOBEC3CENSG00000244509.33044.532403742.93830-0.298003.847802.79220K562HNRNPU
APOBEC3CENSG00000244509.33867.324205971.54610-0.626807.520906.22790K562HSPD1
APOBEC3CENSG00000244509.32210.438202690.05560-0.283302.454401.65940K562MAGOH
APOBEC3CENSG00000244509.31956.014502629.85010-0.427105.573003.58710K562PCBP1
APOBEC3CENSG00000244509.31604.405002393.35630-0.577007.954306.26650K562PCBP2
APOBEC3CENSG00000244509.34041.813804999.44670-0.306802.710101.89950K562PPIG
APOBEC3CENSG00000244509.34254.472505925.95750-0.478106.746305.47110K562PUF60
APOBEC3CENSG00000244509.35277.071403654.435900.530002.133801.64440K562PUS1
APOBEC3CENSG00000244509.31378.768701998.00380-0.535203.159901.62740K562RAVER1
APOBEC3CENSG00000244509.34737.164303560.387400.411906.972306.05900K562RBM15
APOBEC3CENSG00000244509.33997.345902990.993700.418302.294101.31380K562SAFB
APOBEC3CENSG00000244509.33659.382604362.15160-0.253402.968602.12610K562SF3A3
APOBEC3CENSG00000244509.33190.406204037.46450-0.339702.527101.59880K562SF3B1
APOBEC3CENSG00000244509.31806.355702177.04310-0.269302.632601.80040K562SF3B4
APOBEC3CENSG00000244509.33017.722702440.545400.306202.669101.66870K562SRFBP1
APOBEC3CENSG00000244509.32988.118904469.09380-0.5807022.5171020.26160K562SRPK2
APOBEC3CENSG00000244509.32183.715302562.28690-0.230601.951201.34490K562SRSF1
APOBEC3CENSG00000244509.31788.562502283.58480-0.352502.468701.51490K562SUPV3L1
APOBEC3CENSG00000244509.33442.066802713.781100.342902.678501.75940K562TIAL1
APOBEC3CENSG00000244509.33966.926305153.19180-0.377403.537001.92800K562TRIP6
APOBEC3CENSG00000244509.31781.425702096.06720-0.234702.073001.37870K562U2AF2
APOBEC3CENSG00000244509.34028.384904687.69370-0.218703.087102.33010K562UPF1
APOBEC3CENSG00000244509.33306.308804170.95200-0.335206.266305.04570K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





409 alternative splicing events after Knockdown/Knockout APOBEC3C protein :

Only display 100 entries as example. Please click "View All" button to see all 409 entries.     

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENCOR2ENSG00000196498.9chr12-1249416511249417081249343601249344131249507181249508320.117000.000590.09403includedK562APOBEC3C
SEPCBP2ENSG00000197111.11chr12+5386158853861627538610045386107753862560538626160.055000.000440.07691includedK562APOBEC3C
SELRRCC1ENSG00000133739.11chr8+8602654886026590860251668602533486027334860275100.095000.000080.02338includedK562APOBEC3C
SELRRFIP2ENSG00000093167.13chr3-3711428037114373371073003710743337116514371166070.053000.000030.01231includedK562APOBEC3C
SEMARCH8ENSG00000165406.11chr10-4608597146086022460285894602873746089682460903540.169000.000130.03488includedK562APOBEC3C
SEAC079466.1ENSG00000266976.1chr19+2910188829103061290975942909801129103345291061360.124000.000000.00000includedK562APOBEC3C
SESMIM7ENSG00000214046.4chr19-1676484516764936167579301675807216770205167702580.072000.000260.05498includedK562APOBEC3C
SEKTN1ENSG00000126777.13chr14+5613067256130759561282395612833056133958561340480.156000.000150.03694includedK562APOBEC3C
SEMRPS18CENSG00000163319.6chr4+8437949884379582843780618437811184380892843809500.066000.000370.06937includedK562APOBEC3C
SEMETAP1ENSG00000164024.7chr4+9992691999927017999168909991701899950017999500690.053000.000000.00176includedK562APOBEC3C
SEZCCHC10ENSG00000155329.7chr5-1323358231323358651323337911323345421323424501323426120.139000.000500.08343includedK562APOBEC3C
SEFAM53BENSG00000189319.9chr10-1263847261263847811263701751263709481263952041263954560.235000.000400.07183includedK562APOBEC3C
SEADD1ENSG00000087274.12chr4+2928368292840229277402927839292989729317890.075000.000000.00039includedK562APOBEC3C
SEAP3D1ENSG00000065000.11chr19-2132469213257721304062130536213700921370900.059000.000130.03387includedK562APOBEC3C
SETSFMENSG00000123297.12chr12+5818676858186856581808225818094558189959581913670.052000.000260.05508includedK562APOBEC3C
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.183000.000000.00001includedK562APOBEC3C
SESTARD4ENSG00000164211.8chr5-1108359641108361681108352821108358041108366991108368140.067000.000030.01209includedK562APOBEC3C
SEFKBP14ENSG00000106080.6chr7-3005982830059920300586113005873930062280300624320.180000.000010.00560includedK562APOBEC3C
SEMECRENSG00000116353.11chr1-2954734929547433295430992954319729557242295574090.111000.000060.01907includedK562APOBEC3C
SEIVNS1ABPENSG00000116679.11chr1-1852756161852757571852746671852747751852761451852762710.124000.000000.00001includedK562APOBEC3C
SECKLFENSG00000217555.8chr16+6659702466597120665864716658669666599788665999720.058000.000410.07320includedK562APOBEC3C
SEGPBP1ENSG00000062194.11chr5+5653293956532999565317925653185956542126565423110.120000.000250.05294includedK562APOBEC3C
SEHMMRENSG00000072571.15chr5+1628947061628947541628917281628918081628966461628968350.153000.000080.02311includedK562APOBEC3C
SEPAPD4ENSG00000164329.9chr5+7891335278913422789088337890889878915434789156080.099000.000000.00334includedK562APOBEC3C
SEEXTL2ENSG00000162694.9chr1-1013415881013418311013391111013399861013423491013424200.108000.000470.07935includedK562APOBEC3C
SESREK1ENSG00000153914.11chr5+6545189265454760654492906544942465455046654551620.163000.000010.00438includedK562APOBEC3C
SEEIF4HENSG00000106682.10chr7+7360457673604636736041517360424873609070736092080.089000.000000.00207includedK562APOBEC3C
SEPILRBENSG00000121716.14chr7+9995151799951635999509959995110699952765999528630.112000.000090.02703includedK562APOBEC3C
SERAB1AENSG00000138069.12chr2-6531811665318212653139886531582465325104653252000.065000.000000.00003includedK562APOBEC3C
SECHEK1ENSG00000149554.8chr11+1255073431255074391255053231255054281255136861255138020.085000.000000.00196includedK562APOBEC3C
SEPICALMENSG00000073921.13chr11-8570129285701442856949088569501685707868857079720.141000.000000.00069includedK562APOBEC3C
SETOP3BENSG00000100038.15chr22-2233681022336846223300112233017922337126223371630.067000.000000.00320includedK562APOBEC3C
SEAHSA2ENSG00000173209.18chr2+6141068161410754614084726140854061411846614119350.072000.000510.08454includedK562APOBEC3C
SEUGGT2ENSG00000102595.14chr13-9651304196513137965118449651192996515882965159680.607000.000000.00004includedK562APOBEC3C
SEGYPBENSG00000250361.2chr4-1449223371449224361449205631449206021449404031449404550.397000.000120.03202includedK562APOBEC3C
SEMACF1ENSG00000127603.19chr1+3994659139946702399454693994568139950272399504020.150000.000000.00139includedK562APOBEC3C
SEC14orf159ENSG00000133943.16chr14+9161412491614202915807319158087291623982916240340.124000.000330.06412includedK562APOBEC3C
SELIN9ENSG00000183814.11chr1-2264835422264836472264753932264754982264854192264855140.157000.000150.03692includedK562APOBEC3C
SEPPP5CENSG00000011485.10chr19+4688666746886733468797094687983146887036468871350.093000.000010.00560includedK562APOBEC3C
SEMORF4L2ENSG00000123562.12chrX-1029396081029396571029334261029335791029400981029401880.148000.000010.00418includedK562APOBEC3C
SECALM2ENSG00000143933.12chr2-4739955247399598473978724739790347403579474036500.299000.000120.03386includedK562APOBEC3C
SECCDC66ENSG00000180376.12chr3+5659916156599232565977115659815356600621566007340.142000.000390.07127includedK562APOBEC3C
SEEPB41ENSG00000159023.14chr1+2938693329386996293796152937982429391493293916700.097000.000030.01395includedK562APOBEC3C
SESLC25A12ENSG00000115840.9chr2-1726698481726700071726667331726667861726716301726717120.122000.000060.01934includedK562APOBEC3C
SECTD-2576D5.4ENSG00000261448.1chr16+1723005317230207172283601722840717232098172325930.182000.000460.07930includedK562APOBEC3C
SEHNRNPDENSG00000138668.14chr4-8329268083292737832806238328079283294598832951390.126000.000000.00001includedK562APOBEC3C
SESUGP2ENSG00000064607.12chr19-1910444619104549191016961910195819105174191052950.109000.000450.07822includedK562APOBEC3C
SETMEM116ENSG00000198270.8chr12-1124416031124416671124295471124296931124430601124431070.389000.000010.00467includedK562APOBEC3C
SETP73-AS1ENSG00000227372.6chr1-3658993365908136567963656951365936736594220.186000.000000.00098includedK562APOBEC3C
SESIRT2ENSG00000068903.15chr19-3938901839389065393844583938450739390145393904630.140000.000060.01934includedK562APOBEC3C
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.201000.000000.00004includedK562APOBEC3C
SETVP23C-CDRT4ENSG00000259024.2chr17-1545308515453161154503721545046215456998154571430.211000.000050.01854includedK562APOBEC3C
SERIF1ENSG00000080345.13chr2+1523193971523226341523189251523189801523245131523246600.067000.000600.09509includedK562APOBEC3C
SEASPMENSG00000066279.12chr1-1970695601970743151970651271970652941970869181970871130.160000.000030.01156includedK562APOBEC3C
SEDMTF1ENSG00000135164.14chr7+8679727286797359867957988679592186800310868003730.063000.000030.01307includedK562APOBEC3C
SEDLEU1ENSG00000176124.7chr13+5065727750657330506563065065669350678839506794330.165000.000010.00418includedK562APOBEC3C
SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.248000.000270.05530includedK562APOBEC3C
SEHNRNPCENSG00000092199.13chr14-2173146921731495217021112170238821737456217375820.062000.000000.00197includedK562APOBEC3C
SEEXOC7ENSG00000182473.16chr17-7408722374087316740852557408540174090494740906620.168000.000000.00040includedK562APOBEC3C
SEEXOC1ENSG00000090989.13chr4+5675505356755098567499885675009456756388567565520.143000.000010.00408includedK562APOBEC3C
SEMTDHENSG00000147649.5chr8+9871198198712080987031889870341698718853987189780.102000.000620.09749includedK562APOBEC3C
SEUPF3AENSG00000169062.10chr13+1150517761150518751150474951150476021150519931150521040.109000.000640.09935includedK562APOBEC3C
SEZNF675ENSG00000197372.5chr19-2384306023843168238372132383750823844915238450110.082000.000480.08082includedK562APOBEC3C
SESPATS2ENSG00000123352.13chr12+4976501049765073497613024976137049854552498548200.279000.000350.06755includedK562APOBEC3C
SEZNF638ENSG00000075292.14chr2+7163525171635377716332577163339271645731716457690.071000.000120.03285includedK562APOBEC3C
SEERVK3-1ENSG00000142396.6chr19+5882356258823828588174005881758258826113588265680.066000.000130.03488includedK562APOBEC3C
SENOL9ENSG00000162408.10chr1-6601889660198765933396593501660963066097580.274000.000050.01744includedK562APOBEC3C
SEPIEZO1ENSG00000103335.15chr16-8878394488784023887834308878361988785981887861290.145000.000000.00000includedK562APOBEC3C
SEPCM1ENSG00000078674.13chr8+1779221417792367177822211778228917793097177932150.072000.000030.01307includedK562APOBEC3C
SEEAPPENSG00000129518.4chr14-3499856334998681349939023499401335002649350027450.093000.000030.01164includedK562APOBEC3C
SEGOLGA4ENSG00000144674.12chr3+3732750437327552373235823732376337330725373307820.133000.000410.07304includedK562APOBEC3C
SEGOLGA4ENSG00000144674.12chr3+3740273337402796373965913739667837407570374082420.179000.000010.00452includedK562APOBEC3C
SESNX14ENSG00000135317.8chr6-8624855586248582862465098624664286251702862517610.054000.000270.05526includedK562APOBEC3C
SEADARENSG00000160710.11chr1-1545975381545976291545745711545751021546003301546004740.065000.000000.00355includedK562APOBEC3C
SEGORASP1ENSG00000114745.9chr3-3914300039143061391425063914259339144168391443720.077000.000160.03798includedK562APOBEC3C
SEDDX42ENSG00000198231.8chr17+6185246761852538618512226185173661864393618646300.129000.000050.01753includedK562APOBEC3C
SETHAP9-AS1ENSG00000251022.2chr4-8381684483816927838159478381600083821229838213760.197000.000020.01054includedK562APOBEC3C
SEANKLE2ENSG00000176915.10chr12-1333105811333106571333068181333068561333109701333110820.069000.000370.06937includedK562APOBEC3C
SEPBRM1ENSG00000163939.14chr3-5265891252658957526512775265155452661288526613860.160000.000070.02266includedK562APOBEC3C
SEMAEAENSG00000090316.11chr4+1316168131629113091841309388132654413266530.073000.000590.09417includedK562APOBEC3C
SECOL4A3BPENSG00000113163.11chr5-7469513474695212746854167468551274696029746961220.133000.000010.00614includedK562APOBEC3C
SETTC3ENSG00000182670.9chr21+3846284138462889384625323846258638463592384637130.143000.000310.06161includedK562APOBEC3C
SEPPIP5K1ENSG00000168781.17chr15-4385706443857190438509924385113043860660438607140.410000.000260.05454includedK562APOBEC3C
SECSNK2A1ENSG00000101266.12chr20-5085765086934890944893045243155244650.093000.000000.00234includedK562APOBEC3C
SEPRKCBENSG00000166501.8chr16+2422597824226194242024102420255124231281242319320.107000.000040.01474includedK562APOBEC3C
SERBM48ENSG00000127993.10chr7+9216574792165788921637159216428492166164921668480.091000.000410.07379includedK562APOBEC3C
SEPOLE2ENSG00000100479.8chr14-5014106750141145501408405014093450146442501465180.171000.000480.08023includedK562APOBEC3C
SEPISDENSG00000241878.5chr22-3202307432023206320217483202200232023988320242070.483000.000450.07722includedK562APOBEC3C
SESHPRHENSG00000146414.11chr6-1462620591462621591462618581462619371462627581462630100.051000.000240.05255includedK562APOBEC3C
SEPPP2R5CENSG00000078304.15chr14+1022762491022763731022523541022525201023230221023232220.096000.000000.00000includedK562APOBEC3C
SEDNAJC19ENSG00000205981.2chr3-1807047301807048101807031971807037841807058101807058840.054000.000510.08435includedK562APOBEC3C
SETEX30ENSG00000151287.12chr13-1034223611034224361034216601034218911034260311034261610.180000.000320.06277includedK562APOBEC3C
SEFLNAENSG00000196924.10chrX-1535856181535856421535831921535834401535858011535859910.133000.000000.00046includedK562APOBEC3C
SEEIF4A2ENSG00000156976.10chr3+1865060981865062091865056161865056711865069131865070800.160000.000000.00000includedK562APOBEC3C
SEZMYND8ENSG00000101040.15chr20-4584128645841370458394054583954245848908458489750.130000.000640.09930includedK562APOBEC3C
SECSNK1DENSG00000141551.10chr17-8020385180203915802022698020270780206750802073720.135000.000430.07566includedK562APOBEC3C
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.364000.000000.00063includedK562APOBEC3C
SEKMT2DENSG00000167548.10chr12-4941783549417883494163724941665849418360494185200.078000.000040.01526includedK562APOBEC3C
SEAC016723.4ENSG00000235335.2chr2-1686882811686883321686715621686717411687572411687572920.176000.000400.07189includedK562APOBEC3C
SEALDOCENSG00000109107.9chr17-2690298226903038269024382690256226903818269039660.057000.000040.01451includedK562APOBEC3C





5 RBPs can affect the splicing of APOBEC3C :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAPOBEC3CENSG00000244509.3chr22+394115993941175639410087394103843941377039414050-0.058000.000020.00049excludedK562AQR
SEAPOBEC3CENSG00000244509.3chr22+394115993941175639410087394103843941377039414050-0.193000.000000.00000excludedK562APOBEC3C
SEAPOBEC3CENSG00000244509.3chr22+394115993941170339410087394103843941377039414050-0.056000.000280.01700excludedHepG2SF3B4
SEAPOBEC3CENSG00000244509.3chr22+394115993941175639410087394103843941377039414050-0.065000.000040.00449excludedHepG2SRSF9
SEAPOBEC3CENSG00000244509.3chr22+394115993941175639410087394103843941377039414050-0.137000.000000.00000excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The APOBEC3C protein affects to its own RNA splicing after knockdown/knockout.

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAPOBEC3CENSG00000244509.3chr22+394115993941175639410087394103843941377039414050-0.193000.000000.00000excludedK562APOBEC3C