COX6B1

General Information

Gene Name       : COX6B1
Gene ID             : ENSG00000126267.9
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: COX6B1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COX6B1ENSG00000126267.9482.59605.80544.19ENCSR000AEF
HepG2COX6B1ENSG00000126267.9562.36511.93537.14ENCSR985KAT
K562COX6B1ENSG00000126267.91230.86969.371100.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COX6B1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • COX6B1 RNA is bound by 24 proteins.  







eCLIP assay for COX6B1 is not avaliable on ENCORE database.





24 proteins are bound to COX6B1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193614955036149629+3'-UTR4.7804024.47218HepG2PCBP1
chr193614956036149638+3'-UTR3.777657.68538HepG2AKAP1
chr193614954536149624+3'-UTR,CDS3.1457230.27729K562RPS3
chr193614961236149641+3'-UTR3.9301144.09087K562PABPC4
chr193614955836149644+3'-UTR3.0577625.87585K562IGF2BP2
chr193614949636149521+3'-UTR,CDS3.8510612.79542HepG2LARP4
chr193614955936149640+3'-UTR4.2626528.89015K562LARP4
chr193614958136149612+3'-UTR3.1577420.68575K562PABPC4
chr193614958236149639+3'-UTR5.9142372.00285HepG2LARP4
chr193614953836149582+3'-UTR,CDS6.2239569.00703HepG2LARP4
chr193614958036149627+3'-UTR7.17025400.00000K562PCBP1
chr193614955536149628+3'-UTR3.019818.21362HepG2DDX55
chr193614949536149516+3'-UTR,CDS,intron-Proximal3.600235.20919K562LARP4
chr193614949636149518+3'-UTR,CDS4.5528123.33089K562RPS3
chr193614957536149623+3'-UTR3.209475.12571K562ZC3H11A
chr193614953936149580+3'-UTR,CDS6.64439400.00000K562PCBP1
chr193614954236149641+3'-UTR,CDS3.0672914.44208HepG2PCBP2
chr193614955836149624+3'-UTR4.4704827.00351HepG2RPS3
chr193613926336139305+5'-UTR3.4346910.56549K562APOBEC3C
chr193613926836139306+5'-UTR,intron-Proximal3.4459524.50450K562GEMIN5
chr193613926136139302+5'-UTR4.1158971.42176K562PABPC4
chr193614213436142164+5'-UTR,CDS,intron-Proximal3.726784.40704K562EIF3G
chr193614213436142169+5'-UTR,CDS,intron-Proximal3.4779152.53964K562DDX3X
chr193613928436139300+5'-UTR3.339708.91984HepG2LARP4
chr193614213436142164+5'-UTR,CDS,intron-Proximal3.9530745.79708K562PABPC4
chr193614213436142165+5'-UTR,CDS,intron-Proximal3.112117.91912K562APOBEC3C
chr193613924136139305+5'-UTR3.1578113.73339HepG2SUB1
chr193614213436142156+5'-UTR,CDS,intron-Proximal4.030215.86205K562DROSHA
chr193613930236139305+5'-UTR3.9390738.88250K562PABPC4
chr193613923536139305+5'-UTR4.263118.92185K562EIF3G
chr193613925036139302+5'-UTR3.552503.85266K562NOLC1
chr193613928336139301+5'-UTR3.4964547.17374K562DDX3X
chr193613925136139306+5'-UTR,intron-Proximal4.2738112.26553K562DROSHA
chr193613924636139306+5'-UTR,intron-Proximal4.214317.30480HepG2DDX3X
chr193613923336139268+5'-UTR4.0725434.53524K562DDX3X
chr193613930136139305+5'-UTR3.4897535.96549K562DDX3X
chr193613926836139283+5'-UTR3.8303842.64009K562DDX3X
chr193614547536145523+CDS,intron-Distal3.792808.41482K562METAP2
chr193614553436145573+CDS,intron-Distal4.4814336.56742K562RPS3
chr193614218936142218+CDS3.0525618.03481K562PABPC4
chr193614553036145565+CDS,intron-Distal3.470994.71371HepG2GRWD1
chr193614222136142235+CDS3.2575026.90361K562YBX3
chr193614553836145569+CDS,intron-Distal4.4726943.20310K562PABPC4
chr193614553736145571+CDS,intron-Distal6.1892513.27723HepG2RPS3
chr193614549436145510+CDS,intron-Distal3.2107038.30024K562YBX3
chr193614553936145571+CDS,intron-Distal4.4971518.65776HepG2LARP4
chr193614547236145494+CDS,intron-Distal,intron-Proximal3.7333743.39819K562YBX3
chr193614220036142214+CDS4.9760011.76286HepG2LARP4
chr193614553636145572+CDS,intron-Distal3.582737.81588K562DDX6
chr193614219936142215+CDS3.543245.95517K562APOBEC3C
chr193614553836145572+CDS,intron-Distal4.0470212.65232K562LARP4
chr193614223536142240+CDS3.1800219.90497K562YBX3
chr193614224036142251+CDS4.2812833.19556K562YBX3
chr193614547036145555+CDS,intron-Distal,intron-Proximal3.053535.02671K562PUM1
chr193614945336149509+CDS,intron-Proximal3.784695.02403K562SF3B4
chr193614547236145509+CDS,intron-Distal,intron-Proximal3.028413.84932K562ZNF800
chr193614949536149502+CDS,intron-Proximal4.3158015.38759K562PABPC4
chr193614220036142219+CDS3.1479030.51187K562YBX3
chr193614553036145573+CDS,intron-Distal3.439919.78362K562APOBEC3C
chr193614552336145572+CDS,intron-Distal3.439037.28897K562METAP2
chr193614553036145572+CDS,intron-Distal3.818287.75202HepG2DDX55
chr193614218936142240+CDS3.4457611.91719K562GEMIN5
chr193614671336146769+intron-Distal3.079864.30137HepG2PTBP1
chr193614676936146823+intron-Distal5.4499026.19104K562PTBP1
chr193614677036146809+intron-Distal4.707265.75114HepG2PTBP1
chr193614666736146769+intron-Distal4.2775515.01438K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COX6B1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COX6B1 is not available on ENCORE database.

  • 77 RBPs can affect the levels of COX6B1.  








The Knockdown/knockout RNA-Seq assay for COX6B1 is not available on ENCORE database.





77 RBPs can affect the gene expression of COX6B1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COX6B1ENSG00000126267.41955.798401644.728500.249803.255102.60380HepG2ACO1
COX6B1ENSG00000126267.43311.684002404.257800.461904.480503.49110HepG2ASCC1
COX6B1ENSG00000126267.41284.55480856.565900.584506.379005.51270HepG2BOP1
COX6B1ENSG00000126267.42812.188902284.202800.299902.224401.52660HepG2CIRBP
COX6B1ENSG00000126267.4850.784901091.70710-0.359703.007001.59500HepG2DDX52
COX6B1ENSG00000126267.43087.802302390.968700.368902.571201.97520HepG2DDX6
COX6B1ENSG00000126267.41114.897901389.61910-0.317803.362902.59280HepG2DNAJC21
COX6B1ENSG00000126267.41299.672401602.22070-0.301902.732501.65760HepG2EIF3G
COX6B1ENSG00000126267.41603.236402595.26400-0.694904.731003.68370HepG2EIF4G2
COX6B1ENSG00000126267.42445.312702750.91280-0.169901.827101.31770HepG2ETF1
COX6B1ENSG00000126267.41990.237701606.974100.308502.790601.95210HepG2EWSR1
COX6B1ENSG00000126267.41268.899901620.63170-0.353002.145701.44650HepG2FUBP3
COX6B1ENSG00000126267.41865.226802523.94200-0.436303.953702.87880HepG2G3BP2
COX6B1ENSG00000126267.41342.30020941.317200.511902.487601.64380HepG2GEMIN5
COX6B1ENSG00000126267.41181.91990850.649100.474402.116301.55810HepG2HNRNPLL
COX6B1ENSG00000126267.41123.547201550.14840-0.464307.990907.00100HepG2HNRNPU
COX6B1ENSG00000126267.41358.175701733.43500-0.352003.132201.84180HepG2LIN28B
COX6B1ENSG00000126267.41872.218402563.77360-0.453503.958403.17460HepG2MAGOH
COX6B1ENSG00000126267.41890.062302638.90370-0.481504.269603.48910HepG2NCBP2
COX6B1ENSG00000126267.41538.143202350.22110-0.611606.578405.47250HepG2PABPC4
COX6B1ENSG00000126267.41860.436302806.38350-0.5931015.6309014.37850HepG2PCBP1
COX6B1ENSG00000126267.41074.320901382.61520-0.364004.220903.33100HepG2PPIL4
COX6B1ENSG00000126267.41682.031102855.62020-0.7636023.4968022.19700HepG2PTBP1
COX6B1ENSG00000126267.42241.056902759.34570-0.300101.817901.31490HepG2PUM1
COX6B1ENSG00000126267.41872.295603092.66450-0.7240017.3829016.01060HepG2QKI
COX6B1ENSG00000126267.41910.488602806.80790-0.555008.517507.38400HepG2RBM25
COX6B1ENSG00000126267.42009.601303178.01450-0.6612019.3139018.13630HepG2NELFE
COX6B1ENSG00000126267.41576.782802959.91870-0.9086034.1642032.45540HepG2RECQL
COX6B1ENSG00000126267.41470.197301874.45960-0.350503.065601.93340HepG2RPS5
COX6B1ENSG00000126267.4706.058801150.65920-0.704606.529905.37840HepG2RRP9
COX6B1ENSG00000126267.42040.649502973.03330-0.5429013.3707012.22330HepG2SF3B4
COX6B1ENSG00000126267.42271.161302596.94370-0.193402.235901.76980HepG2SRFBP1
COX6B1ENSG00000126267.42419.698803103.21780-0.358907.106506.43180HepG2SRSF1
COX6B1ENSG00000126267.41687.552402524.64560-0.5811010.361509.41220HepG2SRSF9
COX6B1ENSG00000126267.41747.742002254.78420-0.367506.326205.60860HepG2SSB
COX6B1ENSG00000126267.42162.327002918.65860-0.432703.076502.42740HepG2SUCLG1
COX6B1ENSG00000126267.42100.179401501.105100.484403.978403.18950HepG2SUPV3L1
COX6B1ENSG00000126267.42311.258302789.33380-0.271203.141102.54880HepG2TAF15
COX6B1ENSG00000126267.41717.514802562.97460-0.577509.567908.02800HepG2TIA1
COX6B1ENSG00000126267.41310.396801519.71430-0.213802.069701.56880HepG2TRIM56
COX6B1ENSG00000126267.41951.761601477.673500.401303.190302.41430HepG2XRN2
COX6B1ENSG00000126267.41556.234101371.592800.182101.948701.46790HepG2ZNF622
COX6B1ENSG00000126267.41029.675001693.73490-0.718006.224704.17660HepG2ZRANB2
COX6B1ENSG00000126267.41992.510202895.25530-0.539107.336905.35850K562AARS
COX6B1ENSG00000126267.48126.397204326.165800.9094049.0546046.71230K562AGGF1
COX6B1ENSG00000126267.46841.856904753.813200.525204.258902.98430K562AKAP8
COX6B1ENSG00000126267.48708.011904501.574300.951804.770603.90580K562AKAP8L
COX6B1ENSG00000126267.45634.560504723.240200.254403.327702.31890K562ATP5C1
COX6B1ENSG00000126267.44002.657704594.31190-0.198902.779201.81730K562BCLAF1
COX6B1ENSG00000126267.42784.646803278.02760-0.235302.228401.51770K562CPSF6
COX6B1ENSG00000126267.42849.760403485.46990-0.290503.520002.30780K562CSTF2
COX6B1ENSG00000126267.43656.655505042.19220-0.463509.824008.68480K562DDX47
COX6B1ENSG00000126267.42357.889403002.88300-0.348902.854801.50370K562DHX30
COX6B1ENSG00000126267.42132.817602884.52180-0.435604.640302.88080K562DNAJC21
COX6B1ENSG00000126267.46750.723408095.99850-0.262204.160003.01420K562EIF4G2
COX6B1ENSG00000126267.44251.335303218.980200.401206.379004.23580K562EWSR1
COX6B1ENSG00000126267.46780.092404098.054900.726303.633202.65100K562FIP1L1
COX6B1ENSG00000126267.41717.321602750.47660-0.679508.444506.31240K562FKBP4
COX6B1ENSG00000126267.42099.309902827.09220-0.429402.980502.03060K562FTO
COX6B1ENSG00000126267.44272.269003478.999800.296203.658901.58240K562FUBP3
COX6B1ENSG00000126267.42249.359504062.44860-0.852807.032805.79130K562G3BP2
COX6B1ENSG00000126267.44537.490505591.52210-0.301303.342302.16060K562HNRNPA1
COX6B1ENSG00000126267.44271.835006192.55990-0.535708.579607.01930K562HNRNPU
COX6B1ENSG00000126267.41922.048202708.44540-0.494805.169303.13920K562KHDRBS1
COX6B1ENSG00000126267.46321.743104777.285900.404004.945803.78090K562KIF1C
COX6B1ENSG00000126267.43874.563503067.834500.336703.330001.77310K562LARP7
COX6B1ENSG00000126267.46537.911805351.768300.288703.005802.04830K562MBNL1
COX6B1ENSG00000126267.45854.180403751.202800.642006.292404.75700K562NAA15
COX6B1ENSG00000126267.47381.360003164.424101.221809.408007.20640K562PABPN1
COX6B1ENSG00000126267.44259.529503092.862500.461705.521803.43310K562PHF6
COX6B1ENSG00000126267.47846.477404653.227900.753702.985602.12840K562PPIG
COX6B1ENSG00000126267.46552.984003761.177800.800903.761401.96980K562PPP1R8
COX6B1ENSG00000126267.43823.884902840.338300.428904.339603.16880K562PSIP1
COX6B1ENSG00000126267.48731.190104464.307500.967608.753907.83660K562PUS1
COX6B1ENSG00000126267.47274.377004349.810800.7418023.1383021.35390K562RBM15
COX6B1ENSG00000126267.44810.912703852.675000.320403.376201.88930K562RBM25
COX6B1ENSG00000126267.43350.380002591.514900.370404.738603.43760K562RCC2
COX6B1ENSG00000126267.42835.729203933.32400-0.472004.089603.09390K562RPS19
COX6B1ENSG00000126267.46207.836802893.377601.101205.716603.78410K562SF1
COX6B1ENSG00000126267.42184.697702976.56180-0.446203.716802.58090K562SF3B1
COX6B1ENSG00000126267.43158.934302456.679200.362602.382901.44870K562SRFBP1
COX6B1ENSG00000126267.43884.393404340.98220-0.160302.259501.40450K562SRPK2
COX6B1ENSG00000126267.44450.101905783.32710-0.378105.454903.25940K562SRSF9
COX6B1ENSG00000126267.45197.891603937.219300.400603.285802.07310K562U2AF1
COX6B1ENSG00000126267.43509.242804552.81390-0.375608.340607.17670K562UPF1
COX6B1ENSG00000126267.43548.570104051.16820-0.191102.726001.88550K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COX6B1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of COX6B1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for COX6B1 is not avaliable on ENCORE database.