FUBP3

General Information

Gene Name       : FUBP3
Gene ID             : ENSG00000107164.15
Essential Gene : No

Functions

Localization(RBPImage: FUBP3)

Domains (AlphaFold: FUBP3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FUBP3ENSG00000107164.1518.8928.0023.45ENCSR000AEF
HepG2FUBP3ENSG00000107164.1548.8835.3142.09ENCSR985KAT
K562FUBP3ENSG00000107164.1551.1538.3544.75ENCSR000AEO

Assays

5 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 571ENCSR486YGPFUBP3HepG2ReleasedENCAB964AJFENCSR056RZV  
knockdown followed by RNA-seq FUBP3-BGKLV08-K562ENCSR373KOFFUBP3K562ReleasedENCSR913CAE   shRNAKD% = 44.8,32.0
knockdown followed by RNA-seq FUBP3-BGHLV12-HepG2ENCSR755KOMFUBP3HepG2ReleasedENCSR376RJN   shRNAKD% = 81.2,86.7
knockdown followed by RNA-seq FUBP3-BGKcLV08-K562ENCSR619GGEFUBP3K562ReleasedENCSR015KGT   CRISPRKD% = 67.3,65.5
RNA Bind-n-SeqRBNS: FUBP3ENCSR697VZNFUBP3cell-free sampleReleasedENCSR490BSK  






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
FUBP3571HepG2ENCSR486YGPENCSR056RZVENCAB964AJFA303-012A1ReleasedENCODE3


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
FUBP3ENCAB964AJFA303-012A1Released, ENCODE3Released, ENCODE3BGHLV12-27, Released, ENCODE3BGKcLV08-35, Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
FUBP3K562shRNAENCSR373KOFENCSR913CAEFUBP3-LV08-27,FUBP3-LV08-28Nontarget-LV08-1_00003527,nontarget-LV08-2_0000352744.8,32.0ReleasedENCODE3
FUBP3HepG2shRNAENCSR755KOMENCSR376RJNFUBP3-BGHLV12-27_17744,FUBP3-BGHLV12-28_17745NT-BGHLV12-a_17742,NT-BGHLV12-b_1774381.2,86.7ReleasedENCODE3
FUBP3K562CRISPRENCSR619GGEENCSR015KGTFUBP3-BGKcLV08-35,FUBP3-BGKcLV08-36NT-BGKcLV08-1,NT-BGKcLV08-267.3,65.5ReleasedENCODE4
FUBP3K562CRISPRBGKcLV08-37,BGKcLV08-38BGKcLV08-1,BGKcLV08-262.6,67.7NotSatisfiedENCODE4


  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
FUBP3FUBP3ReleasedENCODE3


  Localization Image in HepG2  
    FUBP3: Click to RBP Image Database
  • Cytoplasm
  • Compartment/Organelle
  • Mitochondria
  • Cell Cortex












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    FUBP3Product_ID: A303-012A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: FUBP3-human    		 HepG2_Bethyl_A303-012A_1_FUBP3.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using FUBP3 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-FUBP3 antibody (lanes under 'FUBP3').
    		 FUBP3_Secondary_Western.png<br>Caption: Western blot following shRNA against FUBP3 in HepG2 whole cell lysate using FUBP3 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against FUBP3. FUBP3 protein appears as the green band, Tubulin serves as a control and appears in red.
    		 K562_Bethyl_A303-012A_1_FUBP3.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using FUBP3 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 10% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-FUBP3 antibody (lanes under 'FUBP3').
    		 FUBP3-K562-CRISPR.png<br>Caption: Western blot following CRISPR against FUBP3 in K562 whole cell lysate using FUBP3 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against FUBP3.FUBP3 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.








    RNA Targets
    • FUBP3 protein binds to 2,657 RNA regions.  




    • The binding motifs of FUBP3

      • Trulli

    Proteins bound to RNA
    • FUBP3 RNA is bound by 45 proteins.  






    FUBP3 protein has 2,657 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 2,657 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    FUBP3chr10114926569114926647+6.3130614.59694HepG2TCF7L23'-UTR
    FUBP3chr204950686749506956-4.237565.98925HepG2ADNP3'-UTR,intron-Distal
    FUBP3chr79429752794297572+3.2948029.38981HepG2PEG103'-UTR,intron-Distal
    FUBP3chr28700483787004876+3.829303.12167HepG2RMND5A3'-UTR
    FUBP3chr203025250230252523-3.454779.74153HepG2BCL2L13'-UTR,intron-Distal
    FUBP3chr214019556140195625+4.5581618.24105HepG2ETS23'-UTR
    FUBP3chr32741757627417634-4.038284.01064HepG2SLC4A73'-UTR,intron-Distal
    FUBP3chr204825078148250865-3.8085710.43622HepG2B4GALT53'-UTR,intron-Distal
    FUBP3chr5171290063171290111-5.656019.77446HepG2FBXW113'-UTR,intron-Distal
    FUBP3chrX119570382119570442-4.654159.53754HepG2LAMP23'-UTR,intron-Distal
    FUBP3chr54076247140762612-4.036827.17500HepG2PRKAA13'-UTR,intron-Distal
    FUBP3chr31548361615483678+4.177056.46185HepG2EAF13'-UTR
    FUBP3chr3186507556186507618+3.4584325.47638HepG2EIF4A23'-UTR
    FUBP3chr4159045927159045972-4.771577.89476HepG2FAM198B3'-UTR,intron-Distal,intron-Proximal
    FUBP3chr204370846443708583+3.308575.07440HepG2STK43'-UTR
    FUBP3chr4124324715124324831+5.6824420.77776HepG2SPRY13'-UTR
    FUBP3chr6132269685132269694-5.99191400.00000HepG2CTGF3'-UTR,intron-Distal
    FUBP3chrX152916706152916762+3.7764614.20734HepG2DUSP93'-UTR
    FUBP3chr29752561297525708-3.216356.52721HepG2SEMA4C3'-UTR,intron-Distal
    FUBP3chr153527079835270855-3.308574.82028HepG2ZNF7703'-UTR,intron-Distal
    FUBP3chr2223808012223808063+5.1752413.48076HepG2ACSL33'-UTR
    FUBP3chr106492704564927065-4.440083.83835HepG2JMJD1C3'-UTR,intron-Distal
    FUBP3chr3193415095193415284+3.834805.80402HepG2OPA13'-UTR
    FUBP3chr26840619768406243-3.732564.59124HepG2RP11-474G23.1, PPP3R13'-UTR,intron-Distal
    FUBP3chr1268571806857219-3.712243.68079HepG2MLF23'-UTR,intron-Distal
    FUBP3chr6132269661132269684-5.81710400.00000HepG2CTGF3'-UTR,intron-Distal
    FUBP3chr68295034882950444-4.708804.80693HepG2IBTK5'-UTR,intron-Distal,intron-Proximal
    FUBP3chr118289606782896162+3.393533.23424HepG2PCF113'-UTR
    FUBP3chr35257942752579483-4.551283.35973HepG2PBRM13'-UTR,intron-Distal
    FUBP3chr3123210468123210503-3.969533.68079HepG2PTPLB3'-UTR,intron-Distal
    FUBP3chr54328990143289933-3.462186.23463HepG2HMGCS13'-UTR,intron-Distal
    FUBP3chr73262821532628283+3.525053.23424HepG2AVL93'-UTR,intron-Distal
    FUBP3chr3119150668119150717-3.366306.26843HepG2TMEM39A3'-UTR,intron-Distal
    FUBP3chr59636987596369892+3.606374.03249HepG2LNPEP3'-UTR
    FUBP3chr3150260444150260553-5.4790821.21006HepG2SERP13'-UTR,intron-Distal
    FUBP3chr152523341225233466+4.8663016.07854HepG2SNURF, SNHG14intron-Distal
    FUBP3chr116946850469468522+4.640054.32097HepG2CCND13'-UTR
    FUBP3chr211633357016333608-4.784119.89284HepG2NRIP13'-UTR,intron-Distal
    FUBP3chr49998381699983937+4.7443416.07854HepG2METAP13'-UTR
    FUBP3chr8121549200121549239-4.877325.29571HepG2SNTB13'-UTR,intron-Distal
    FUBP3chr81742793017427990+5.3759515.72151HepG2SLC7A23'-UTR
    FUBP3chr29924105999241159-3.6583410.08768HepG2MGAT4A3'-UTR,intron-Distal
    FUBP3chr205614128456141380+7.5946323.55213HepG2PCK13'-UTR
    FUBP3chr1169101618169101668+3.6494823.16655HepG2ATP1B13'-UTR
    FUBP3chr133962404339624162+3.205344.27074HepG2NHLRC33'-UTR
    FUBP3chr147418186074181943-4.988514.80693HepG2ELMSAN13'-UTR,intron-Distal
    FUBP3chr288242748824363+4.4019825.49949HepG2ID23'-UTR
    FUBP3chr2109301218109301372+4.634338.82933HepG2LIMS13'-UTR
    FUBP3chrX4985739349857458+4.419764.32097HepG2CLCN53'-UTR
    FUBP3chr6132269702132269717-6.31232400.00000HepG2CTGF3'-UTR,intron-Distal
    FUBP3chr24255949942559560+3.0937221.27982HepG2EML43'-UTR
    FUBP3chr1205578992205579062-3.051284.39733HepG2ELK43'-UTR,intron-Distal
    FUBP3chr74593291845932969+5.68753400.00000HepG2IGFBP13'-UTR
    FUBP3chr203614636536146448-3.579579.64749HepG2BLCAP3'-UTR,intron-Distal
    FUBP3chr127642360676423643-3.442314.46783HepG2PHLDA13'-UTR,intron-Distal
    FUBP3chr13947012239470179+3.3475718.29344HepG2AKIRIN13'-UTR
    FUBP3chr15924708759247158-4.997824.01944HepG2JUN3'-UTR
    FUBP3chr39851484298514924-4.009048.70671HepG2DCBLD23'-UTR,intron-Distal
    FUBP3chr175339933253399479+3.6202651.20226HepG2HLF3'-UTR
    FUBP3chr37242710272427168-3.771574.56889HepG2RYBP3'-UTR,intron-Distal
    FUBP3chr10714545714583-4.601054.72618HepG2DIP2Cintron-Distal
    FUBP3chr134905588849055979+5.020586.28020HepG2RB13'-UTR
    FUBP3chr86153350061533623+5.669808.26964HepG2RAB2A3'-UTR
    FUBP3chr2170940183170940285+4.882766.15718HepG2UBR33'-UTR
    FUBP3chr5179204063179204136+5.258807.27204HepG2MAML13'-UTR,intron-Distal
    FUBP3chrX9988414199884233-3.908227.63804HepG2TSPAN63'-UTR,intron-Distal
    FUBP3chr8133025163133025249+4.369999.51401HepG2EFR3A3'-UTR
    FUBP3chr66429238464292424+4.0965210.20013HepG2PTP4A13'-UTR
    FUBP3chr2100017421100017477-4.343763.83835HepG2REV13'-UTR,intron-Distal
    FUBP3chr191662876916628837-3.855124.03249HepG2CHERP, CTD-3222D19.23'-UTR,intron-Distal
    FUBP3chr1183113414183113482+6.8706321.99591HepG2LAMC13'-UTR
    FUBP3chr12429585524295927-3.258804.03249HepG2SRSF103'-UTR,intron-Distal
    FUBP3chr36642926966429317-4.488513.32080HepG2LRIG13'-UTR,intron-Distal
    FUBP3chr10119042459119042489-3.130494.82028HepG2PDZD83'-UTR,intron-Distal
    FUBP3chr59636824496368276+4.909385.29571HepG2LNPEP3'-UTR
    FUBP3chr101896602018966075+3.237893.65614HepG2ARL5B3'-UTR
    FUBP3chr5130727562130727613+3.790305.01462HepG2CDC42SE23'-UTR,intron-Distal,intron-Proximal
    FUBP3chr182912836729128402+4.004724.01064HepG2DSG23'-UTR
    FUBP3chr10105360697105360754-4.559824.32097HepG2SH3PXD2A3'-UTR,intron-Distal
    FUBP3chr2191799882191799946+4.3659610.20013HepG2GLS3'-UTR,intron-Distal
    FUBP3chr59636635396366407+4.551284.37192HepG2LNPEP3'-UTR
    FUBP3chrX102930936102931019-3.8905519.29252HepG2MORF4L23'-UTR,intron-Distal
    FUBP3chr288243668824408+5.220787.77020HepG2ID23'-UTR
    FUBP3chr134500805745008113-4.479083.35973HepG2TSC22D13'-UTR,CDS,intron-Distal
    FUBP3chr1196109149610982+5.1480216.27399HepG2WEE13'-UTR,intron-Distal
    FUBP3chr116408423364084294-3.417217.04519HepG2TRMT1123'-UTR,intron-Distal
    FUBP3chr147749099877491160-5.0115616.43601HepG2IRF2BPL3'-UTR
    FUBP3chr142379530423795345+3.308575.24860HepG2PABPN13'-UTR
    FUBP3chr12371904423719187-4.442317.63804HepG2TCEA3intron-Distal
    FUBP3chr2021290372129139+3.398429.91179HepG2STK353'-UTR,intron-Distal
    FUBP3chr1178887547178887629+3.366303.12167HepG2RALGPS23'-UTR
    FUBP3chr2228682099228682121+3.9989717.34752HepG2CCL203'-UTR
    FUBP3chr1235274449235274513-3.3720512.90466HepG2TOMM203'-UTR,intron-Distal
    FUBP3chr172090305420903167-4.5035813.49201HepG2USP223'-UTR,intron-Distal
    FUBP3chr204588620445886263-5.027275.78691HepG2ZMYND8intron-Distal
    FUBP3chr3149235061149235156-4.440083.66896HepG2WWTR13'-UTR,intron-Distal
    FUBP3chr124675216446752197-5.4490034.60937HepG2SLC38A23'-UTR,intron-Distal,intron-Proximal
    FUBP3chr7137559751137559835-3.430408.59527HepG2CREB3L23'-UTR,intron-Distal
    FUBP3chr12124147061124147126+4.435063.32080HepG2GTF2H33'-UTR
    FUBP3chr126564076865640816+4.584844.80693HepG2LEMD33'-UTR




    45 proteins are bound to FUBP3 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr9133512908133512937+3'-UTR5.8773211.28711HepG2FUBP3
    chr9133513012133513079+3'-UTR4.1285712.38312HepG2FUBP3
    chr9133513079133513149+3'-UTR4.7950816.43601HepG2FUBP3
    chr9133513075133513154+3'-UTR3.051103.08258K562TIA1
    chr9133513400133513482+3'-UTR5.1476014.26643HepG2FUBP3
    chr9133512884133512908+3'-UTR4.417187.41486HepG2FUBP3
    chr9133513656133513715+3'-UTR4.004473.61803HepG2ZC3H11A
    chr9133513696133513736+3'-UTR6.5706928.28769K562PABPC4
    chr9133512937133512977+3'-UTR3.332225.24860HepG2FUBP3
    chr9133512750133512799+3'-UTR3.158346.23463HepG2FUBP3
    chr9133455038133455131+5'-UTR,CDS3.195265.82976HepG2PRPF4
    chr9133454978133455108+5'-UTR,CDS3.136518.78447HepG2NCBP2
    chr9133454997133455074+5'-UTR,CDS4.4796219.70553HepG2DDX3X
    chr9133454990133455060+5'-UTR3.390494.17442HepG2SRSF1
    chr9133455066133455116+5'-UTR,CDS3.826437.37356K562DDX3X
    chr9133501750133501815+CDS,intron-Proximal4.370765.79396K562DDX24
    chr9133491742133491781+CDS3.416744.06757K562UCHL5
    chr9133491736133491796+CDS,intron-Proximal4.244577.39346K562DDX24
    chr9133501773133501885+CDS3.181094.76957K562LIN28B
    chr9133507617133507720+CDS,intron-Proximal3.594618.43093HepG2PRPF8
    chr9133498998133499099+CDS,intron-Proximal4.662776.50203HepG2GRWD1
    chr9133510009133510058+CDS,intron-Proximal4.170708.59763HepG2SF3A3
    chr9133487819133487885+CDS,intron-Proximal3.043703.70059HepG2U2AF2
    chr9133488382133488447+CDS,intron-Proximal4.752466.23016HepG2PRPF8
    chr9133498997133499064+CDS,intron-Proximal3.9517612.49274K562DDX24
    chr9133510034133510082+CDS,intron-Proximal4.126968.79285K562AQR
    chr9133498994133499067+CDS,intron-Proximal4.141776.53930HepG2G3BP1
    chr9133511401133511513+CDS3.526864.02291HepG2GRWD1
    chr9133491687133491768+CDS,intron-Proximal4.373495.67400HepG2SF3A3
    chr9133485325133485388+CDS,intron-Proximal4.100188.67675K562U2AF2
    chr9133498099133498195+CDS3.639139.45444K562UCHL5
    chr9133488385133488413+CDS4.308414.50440HepG2PPIG
    chr9133491672133491753+CDS,intron-Proximal3.834455.47851K562SF3B4
    chr9133491865133491949+CDS,intron-Proximal4.0302214.10710HepG2PRPF8
    chr9133493245133493283+CDS,intron-Proximal3.428504.70460K562DDX24
    chr9133470938133471014+CDS,intron-Proximal5.964659.75034HepG2PRPF8
    chr9133491853133491905+CDS,intron-Proximal3.955853.79347HepG2GRWD1
    chr9133470921133470996+CDS,intron-Proximal3.137324.57360K562SRSF1
    chr9133493272133493351+CDS,intron-Proximal5.0023311.43008HepG2PRPF8
    chr9133506159133506217+CDS,intron-Proximal3.926426.18341HepG2PRPF8
    chr9133491726133491774+CDS,intron-Proximal3.867625.09028HepG2U2AF2
    chr9133455116133455155+CDS,intron-Proximal5.431888.37602K562DDX3X
    chr9133505923133506056+CDS,intron-Proximal4.369658.28159K562SF3B4
    chr9133509997133510094+CDS,intron-Proximal3.768977.64838K562BUD13
    chr9133455070133455118+CDS3.594005.00225K562GEMIN5
    chr9133507335133507413+CDS,intron-Proximal3.077366.00788HepG2PPIG
    chr9133501753133501793+CDS3.548264.49347K562UCHL5
    chr9133493144133493189+CDS,intron-Proximal4.972876.02529K562SF3B4
    chr9133498096133498162+CDS3.8210010.53109K562DDX24
    chr9133498997133499062+CDS,intron-Proximal3.286104.39623HepG2PPIG
    chr9133510032133510072+CDS,intron-Proximal3.9177912.87095K562SF3B4
    chr9133505994133506074+CDS,intron-Proximal3.539795.63071HepG2AQR
    chr9133507664133507722+CDS,intron-Proximal4.077075.63763K562AQR
    chr9133495746133495782+CDS3.480813.26275K562BUD13
    chr9133506939133506972+CDS,intron-Proximal3.515933.86355HepG2PPIG
    chr9133485320133485389+CDS,intron-Proximal3.783326.75956HepG2U2AF2
    chr9133501887133501971+CDS,intron-Proximal4.469288.96422HepG2PRPF8
    chr9133488342133488407+CDS,intron-Proximal3.913305.42720K562UCHL5
    chr9133498997133499094+CDS,intron-Proximal4.9063611.46466K562UCHL5
    chr9133469016133469104+intron-Distal3.870833.67656K562U2AF2
    chr9133471668133471810+intron-Distal3.194066.92889K562KHSRP
    chr9133455203133455270+intron-Distal,intron-Proximal4.629085.93727HepG2CSTF2T
    chr9133488000133488069+intron-Distal3.410665.32296K562PRPF8
    chr9133455202133455271+intron-Distal,intron-Proximal3.400063.94332HepG2FAM120A
    chr9133455217133455268+intron-Distal,intron-Proximal4.154735.47093K562DDX51
    chr9133490263133490370+intron-Distal5.1881021.23060HepG2QKI
    chr9133455190133455281+intron-Distal,intron-Proximal5.5488513.74349HepG2PRPF4
    chr9133475505133475579+intron-Distal6.0667924.72806HepG2PCBP2
    chr9133494704133494755+intron-Distal4.637115.07478HepG2U2AF2
    chr9133485232133485284+intron-Distal,intron-Proximal4.173984.49508K562U2AF2
    chr9133508689133508756+intron-Distal4.212083.97974HepG2RBFOX2
    chr9133509324133509371+intron-Distal3.995603.40087HepG2RBFOX2
    chr9133473755133473840+intron-Distal3.210774.01540K562TARDBP
    chr9133508864133508964+intron-Distal4.354788.48132HepG2RBFOX2
    chr9133455198133455306+intron-Distal,intron-Proximal6.0262514.85235K562GTF2F1
    chr9133469004133469097+intron-Distal4.020059.18134HepG2U2AF2
    chr9133455234133455425+intron-Distal,intron-Proximal3.415195.03073K562FUS
    chr9133490022133490095+intron-Distal3.185137.61934HepG2U2AF2
    chr9133455292133455338+intron-Distal3.083673.07461K562DROSHA
    chr9133509000133509046+intron-Distal4.075404.07948K562RBFOX2
    chr9133455289133455351+intron-Distal3.480664.60046HepG2CSTF2T
    chr9133490279133490361+intron-Distal4.170795.51743K562QKI
    chr9133473483133473541+intron-Distal4.348885.29141K562XRCC6
    chr9133475470133475568+intron-Distal5.472109.51434HepG2PTBP1
    chr9133484732133484794+intron-Distal3.104973.53619HepG2HNRNPM
    chr9133509231133509291+intron-Distal3.204313.58507HepG2XPO5
    chr9133507964133508055+intron-Distal3.390867.44808HepG2RBFOX2
    chr9133458952133459098+intron-Distal3.755165.82272HepG2HNRNPL
    chr9133468997133469110+intron-Distal3.851063.07225K562U2AF1
    chr9133491290133491336+intron-Distal4.245034.30850HepG2QKI
    chr9133468942133469068+intron-Distal3.5555011.56901K562KHSRP
    chr9133490759133490789+intron-Distal4.434624.80665HepG2QKI
    chr9133488526133488599+intron-Distal3.296673.14650K562TIA1
    chr9133496422133496523+intron-Distal3.874363.49011K562KHSRP
    chr9133455208133455265+intron-Distal,intron-Proximal3.363163.92966HepG2GTF2F1
    chr9133455222133455322+intron-Distal,intron-Proximal4.8264116.86925HepG2EFTUD2
    chr9133455203133455270+intron-Distal,intron-Proximal3.127144.48980K562PRPF8
    chr9133483086133483176+intron-Distal3.902503.34600K562SAFB
    chr9133475377133475454+intron-Distal4.723356.08961HepG2PTBP1
    chr9133475312133475397+intron-Distal4.3350713.11176HepG2PCBP2
    chr9133509097133509174+intron-Distal3.553545.35619K562AQR
    chr9133487638133487830+intron-Distal,intron-Proximal3.3207212.81645K562KHSRP
    chr9133507800133507864+intron-Distal4.887596.64533HepG2RBFOX2
    chr9133475587133475643+intron-Distal3.917073.47525K562MATR3
    chr9133475515133475571+intron-Distal4.232124.69074K562PTBP1
    chr9133475485133475565+intron-Distal4.486384.83379HepG2HNRNPK
    chr9133507868133507944+intron-Distal4.154768.21449HepG2RBFOX2
    chr9133458328133458405+intron-Distal3.248844.40834HepG2QKI
    chr9133509891133509932+intron-Distal4.954456.34163HepG2XRN2
    chr9133464545133464616+intron-Distal3.259473.68839K562KHSRP
    chr9133455214133455360+intron-Distal,intron-Proximal3.395098.85764K562CSTF2T
    chr9133509882133509941+intron-Distal3.955393.77433K562XRN2
    chr9133472886133472953+intron-Distal4.221074.48994K562RBM15
    chr9133455207133455337+intron-Distal,intron-Proximal4.883673.77881HepG2PCBP2
    chr9133456898133456992+intron-Distal,intron-Proximal3.233068.23127K562KHSRP
    chr9133490022133490093+intron-Distal4.045963.65740K562U2AF2
    chr9133463925133464001+intron-Distal3.169613.39857HepG2HNRNPM
    chr9133455281133455349+intron-Distal3.776696.65823HepG2PRPF4
    chr9133485226133485280+intron-Distal,intron-Proximal3.902825.67291HepG2U2AF2
    chr9133509077133509155+intron-Distal4.326243.95187HepG2AQR
    chr9133471003133471045+intron-Proximal5.126366.55845K562RBM22
    chr9133509989133510032+intron-Proximal5.0306111.52732K562SF3B4
    chr9133489759133489811+intron-Proximal4.303746.97875K562RBM22
    chr9133501892133501937+intron-Proximal4.747594.13847K562AQR
    chr9133489760133489811+intron-Proximal3.127144.48980K562PRPF8
    chr9133509969133510027+intron-Proximal3.161783.65567HepG2BUD13
    chr9133489732133489802+intron-Proximal4.743364.65563K562AQR
    chr9133493282133493328+intron-Proximal3.922025.35619K562AQR
    chr9133493306133493359+intron-Proximal3.882134.34418HepG2RBM22
    chr9133506194133506218+intron-Proximal3.986075.26367K562AQR
    chr9133509977133510035+intron-Proximal4.735956.23935HepG2AQR
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    The FUBP3 protein binds to its own RNA.

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    FUBP3chr9133512908133512937+5.8773211.28711HepG2FUBP33'-UTR
    FUBP3chr9133513012133513079+4.1285712.38312HepG2FUBP33'-UTR
    FUBP3chr9133513079133513149+4.7950816.43601HepG2FUBP33'-UTR
    FUBP3chr9133513400133513482+5.1476014.26643HepG2FUBP33'-UTR
    FUBP3chr9133512884133512908+4.417187.41486HepG2FUBP33'-UTR
    FUBP3chr9133512937133512977+3.332225.24860HepG2FUBP33'-UTR
    FUBP3chr9133512750133512799+3.158346.23463HepG2FUBP33'-UTR


    Diffrential Expression
    • 5,015 differentially expressed genes after Knockdown/Knockout FUBP3 protein.  





    • 53 RBPs can affect the levels of FUBP3.  







    5,015 differentially expressed genes after Knockdown/Knockout FUBP3 protein :

    Only display 100 entries as example. Please click "View All" button to see all 5,015 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    TSPAN6ENSG00000000003.10507.380601127.85580-1.1524021.6905019.59370HepG2FUBP3
    SCYL3ENSG00000000457.9135.1253077.265600.806302.888702.08610HepG2FUBP3
    GCLCENSG00000001084.61527.87820986.964800.630408.358207.02930HepG2FUBP3
    NIPAL3ENSG00000001461.12370.87800231.306600.681004.503103.51490HepG2FUBP3
    LAS1LENSG00000001497.12717.07140493.519300.538904.419603.44000HepG2FUBP3
    ANKIB1ENSG00000001629.51021.46090617.946900.725009.017007.63920HepG2FUBP3
    CYP51A1ENSG00000001630.112361.209407364.53790-1.6411014.5203012.77940HepG2FUBP3
    KRIT1ENSG00000001631.10667.30670403.817100.724507.223105.99190HepG2FUBP3
    RAD52ENSG00000002016.12219.19350122.778100.836104.424303.44400HepG2FUBP3
    BADENSG00000002330.975.70200189.67260-1.325104.137803.18460HepG2FUBP3
    LASP1ENSG00000002834.133702.223305016.56000-0.438305.077804.02490HepG2FUBP3
    M6PRENSG00000003056.3985.310401677.95820-0.7681012.2541010.65870HepG2FUBP3
    CASP10ENSG00000003400.10936.56810600.919200.640107.312406.07250HepG2FUBP3
    CFLARENSG00000003402.152115.432501353.769000.643909.874808.43640HepG2FUBP3
    TFPIENSG00000003436.1015299.5414012068.884500.342104.353403.38010HepG2FUBP3
    NDUFAF7ENSG00000003509.11447.10680335.838200.412802.371501.64130HepG2FUBP3
    RBM5ENSG00000003756.123105.062001530.498701.0205024.5718022.34850HepG2FUBP3
    ARF5ENSG00000004059.6632.521601293.91740-1.0326019.0636017.08600HepG2FUBP3
    POLDIP2ENSG00000004142.71297.427302021.23990-0.639609.598308.18030HepG2FUBP3
    RBM6ENSG00000004534.104686.769202226.141401.0739029.1911026.79480HepG2FUBP3
    NDUFAB1ENSG00000004779.51114.676901471.16840-0.400303.700802.79950HepG2FUBP3
    CDC27ENSG00000004897.72126.544801641.390800.373503.921902.99390HepG2FUBP3
    HCCSENSG00000004961.10144.54840247.38400-0.775204.229803.26840HepG2FUBP3
    SLC25A5ENSG00000005022.54440.436506123.08390-0.463605.720204.60100HepG2FUBP3
    POLR2JENSG00000005075.11514.02320801.83890-0.641505.420504.33060HepG2FUBP3
    DHX33ENSG00000005100.8811.10670566.936700.516604.501703.51370HepG2FUBP3
    ACSM3ENSG00000005187.7670.789201081.92780-0.689708.387907.05620HepG2FUBP3
    CIAPIN1ENSG00000005194.10642.91670833.91950-0.375302.694101.91780HepG2FUBP3
    PON1ENSG00000005421.451.4797018.603201.468403.051502.22860HepG2FUBP3
    CROTENSG00000005469.7298.01570143.952001.049708.186906.86950HepG2FUBP3
    ABCB4ENSG00000005471.11955.73140726.445800.395703.172802.33440HepG2FUBP3
    KMT2EENSG00000005483.151862.642201461.212000.350103.107202.27790HepG2FUBP3
    RHBDD2ENSG00000005486.12353.93600663.94940-0.907608.349107.02130HepG2FUBP3
    IBTKENSG00000005700.101827.648601430.826900.353002.825902.03060HepG2FUBP3
    ITGA3ENSG00000005884.133.5170017.91970-2.349102.283901.56400HepG2FUBP3
    GGNBP2ENSG00000005955.81165.77170810.680200.524005.429504.33910HepG2FUBP3
    ASB4ENSG00000005981.897.4813023.179802.072209.020207.64150HepG2FUBP3
    GDE1ENSG00000006007.71393.735601713.82680-0.298302.428801.69140HepG2FUBP3
    CRLF1ENSG00000006016.62494.630403325.77900-0.414901.995201.31910HepG2FUBP3
    OSBPL7ENSG00000006025.7245.31450115.987501.080606.936005.72700HepG2FUBP3
    TMEM98ENSG00000006042.71372.741101710.60290-0.317402.584501.82320HepG2FUBP3
    SYNRGENSG00000006114.11883.72820525.421400.750008.977707.60360HepG2FUBP3
    TMEM132AENSG00000006118.10449.72280615.83700-0.453503.274902.42430HepG2FUBP3
    CX3CL1ENSG00000006210.61812.969803079.62980-0.7644012.1363010.54990HepG2FUBP3
    TNFRSF12AENSG00000006327.9254.79130383.69830-0.590703.777902.86770HepG2FUBP3
    JHDM1DENSG00000006459.63172.954901182.431601.4240022.0358019.92330HepG2FUBP3
    ALDH3B1ENSG00000006534.1165.91330115.55670-0.810002.661201.89100HepG2FUBP3
    PHTF2ENSG00000006576.12344.81070216.507400.671304.427203.44670HepG2FUBP3
    VPS41ENSG00000006715.11738.49380493.876000.580305.147004.08520HepG2FUBP3
    ARSDENSG00000006756.11292.99660206.626200.503802.458801.71750HepG2FUBP3
    PNPLA4ENSG00000006757.7242.60490342.70290-0.498302.666901.89580HepG2FUBP3
    PROM1ENSG00000007062.7243.49530389.83500-0.679004.863003.83550HepG2FUBP3
    TRAPPC6AENSG00000007255.6124.40450257.88910-1.051707.229305.99740HepG2FUBP3
    RPUSD1ENSG00000007376.398.35970191.42580-0.960604.825603.80250HepG2FUBP3
    LUC7LENSG00000007392.121587.17470732.612401.1152013.3849011.71330HepG2FUBP3
    BAIAP3ENSG00000007516.9248.60460132.139000.911705.403504.31550HepG2FUBP3
    TSR3ENSG00000007520.3230.72500339.35970-0.556603.241202.39430HepG2FUBP3
    PIGQENSG00000007541.10101.79180241.54450-1.246708.907007.53790HepG2FUBP3
    CRAMP1LENSG00000007545.11679.62310524.633500.373302.274901.55630HepG2FUBP3
    DNAJC11ENSG00000007923.111360.64290996.296100.449504.500403.51260HepG2FUBP3
    PSMB1ENSG00000008018.82516.263603047.25470-0.276202.396001.66350HepG2FUBP3
    CDK11AENSG00000008128.18572.50040389.656500.555004.130103.17810HepG2FUBP3
    NADKENSG00000008130.11849.053901242.22410-0.549006.079104.93410HepG2FUBP3
    SPAG9ENSG00000008294.163788.874202514.403100.591509.647208.22710HepG2FUBP3
    CELSR3ENSG00000008300.10896.55220642.092100.481503.924502.99600HepG2FUBP3
    AASSENSG00000008311.10777.89260344.471101.1751017.0051015.13890HepG2FUBP3
    PLEKHG6ENSG00000008323.11359.85070612.12240-0.766407.688906.41690HepG2FUBP3
    MPNDENSG00000008382.11138.41010206.56670-0.577702.486001.73990HepG2FUBP3
    PKD1ENSG00000008710.13768.509301016.57840-0.403603.423502.55270HepG2FUBP3
    MAPK8IP2ENSG00000008735.1015.5700065.03680-2.062506.430305.25990HepG2FUBP3
    RHOBTB2ENSG00000008853.12188.47270283.71330-0.590103.159502.32330HepG2FUBP3
    HEATR5BENSG00000008869.7641.18560419.953600.610405.199304.13260HepG2FUBP3
    RPS20ENSG00000008988.57334.667009366.58990-0.352804.352003.37920HepG2FUBP3
    REV3LENSG00000009413.11856.92980606.877300.497704.466603.48310HepG2FUBP3
    MASP2ENSG00000009724.12188.17810350.41470-0.897007.064405.84390HepG2FUBP3
    FAM76AENSG00000009780.11140.1616077.369700.857203.269202.41940HepG2FUBP3
    ZNF207ENSG00000010244.123127.219702269.678600.462305.950604.81860HepG2FUBP3
    CD9ENSG00000010278.7108.61610281.21750-1.3724011.6424010.07940HepG2FUBP3
    IFFO1ENSG00000010295.15385.75670266.893300.531302.613601.84880HepG2FUBP3
    SEMA3GENSG00000010319.2535.71230721.48260-0.429503.408702.54030HepG2FUBP3
    IDSENSG00000010404.13885.94420701.393800.336902.313401.59040HepG2FUBP3
    SCMH1ENSG00000010803.12837.156801215.29940-0.537706.023604.88470HepG2FUBP3
    HIVEP2ENSG00000010818.41732.18970836.117801.0507021.0673019.01010HepG2FUBP3
    LYPLA2ENSG00000011009.6892.872801426.62060-0.676104.828703.80470HepG2FUBP3
    BTBD7ENSG00000011114.10578.67000359.775900.685506.429105.25910HepG2FUBP3
    MBTD1ENSG00000011258.111591.088501087.440500.549004.174303.21740HepG2FUBP3
    TTC19ENSG00000011295.11475.44710357.323900.412002.346701.61930HepG2FUBP3
    SYT7ENSG00000011347.5219.89340520.44320-1.242906.998805.78470HepG2FUBP3
    PIK3C2AENSG00000011405.92184.828401620.691900.430804.879703.85130HepG2FUBP3
    WIZENSG00000011451.13424.79200580.17580-0.449703.206102.36380HepG2FUBP3
    MAP4K3ENSG00000011566.103313.171102733.021200.277602.661401.89110HepG2FUBP3
    SEMA3BENSG00000012171.132202.305901369.859900.6849010.590409.10200HepG2FUBP3
    NR1H4ENSG00000012504.9410.35310943.48850-1.2011016.7794014.92720HepG2FUBP3
    KDM5DENSG00000012817.111694.18010898.079000.9156016.3716014.53970HepG2FUBP3
    CALCOCO1ENSG00000012822.111602.19630863.116200.8923010.972009.45330HepG2FUBP3
    MAP4K5ENSG00000012983.7801.71480551.691800.539104.921403.88790HepG2FUBP3
    SLC25A39ENSG00000013306.112063.776403000.35820-0.539807.192305.96270HepG2FUBP3
    MVPENSG00000013364.14446.79820696.16330-0.639806.369205.20540HepG2FUBP3
    DDX11ENSG00000013573.12601.83530339.671500.825108.207006.88710HepG2FUBP3
    UFL1ENSG00000014123.91165.62980825.836800.497105.301704.22230HepG2FUBP3
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    53 RBPs can affect the gene expression of FUBP3 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    FUBP3ENSG00000107164.151262.864701449.64890-0.199001.947301.42050HepG2ACO1
    FUBP3ENSG00000107164.15821.549801390.01000-0.7587012.7309011.27560HepG2CALR
    FUBP3ENSG00000107164.151334.620601653.67800-0.309202.052501.37960HepG2CIRBP
    FUBP3ENSG00000107164.151665.793701191.434200.483402.572901.83670HepG2CNOT7
    FUBP3ENSG00000107164.152044.518201659.385300.301003.675102.95490HepG2CELF1
    FUBP3ENSG00000107164.151232.925301784.32110-0.5333012.6419011.24580HepG2DAZAP1
    FUBP3ENSG00000107164.151482.769002015.13400-0.442603.648602.94010HepG2DDX3X
    FUBP3ENSG00000107164.15890.881701218.43960-0.451702.999602.20020HepG2DDX55
    FUBP3ENSG00000107164.151091.937201731.02840-0.664706.334305.42910HepG2DDX6
    FUBP3ENSG00000107164.151262.335301664.09290-0.398602.964702.35080HepG2EIF2S1
    FUBP3ENSG00000107164.151289.939101022.594100.335002.891301.78810HepG2EIF3G
    FUBP3ENSG00000107164.153075.172202416.480700.347705.882505.06040HepG2ETF1
    FUBP3ENSG00000107164.15213.069101182.22390-2.4721078.3075074.55910HepG2FUBP3
    FUBP3ENSG00000107164.151020.550601401.22480-0.457302.648101.55560HepG2FUS
    FUBP3ENSG00000107164.151427.860901174.505300.281701.983401.38550HepG2HNRNPC
    FUBP3ENSG00000107164.151379.606901625.40260-0.236503.090302.38080HepG2HNRNPL
    FUBP3ENSG00000107164.152588.703901857.191000.479003.828802.95100HepG2NSUN2
    FUBP3ENSG00000107164.152018.116701688.955000.256801.958701.44520HepG2PUF60
    FUBP3ENSG00000107164.152237.280201792.876000.319405.031304.27960HepG2PUM1
    FUBP3ENSG00000107164.152278.038601791.581500.346503.892303.09990HepG2PUM2
    FUBP3ENSG00000107164.151909.134201280.126800.576503.111402.36690HepG2RAVER1
    FUBP3ENSG00000107164.151658.633901977.97110-0.254002.091001.33180HepG2RBM15
    FUBP3ENSG00000107164.151148.131602019.72190-0.8149019.7427018.61950HepG2RBM22
    FUBP3ENSG00000107164.151451.481601015.660300.515006.155505.27960HepG2RPS19
    FUBP3ENSG00000107164.151261.014501039.021600.279302.438701.82770HepG2SAFB2
    FUBP3ENSG00000107164.151225.410201753.05630-0.516609.229208.24610HepG2SF3B4
    FUBP3ENSG00000107164.151836.139301619.394600.181101.923401.32050HepG2SLBP
    FUBP3ENSG00000107164.152257.328601829.864200.302804.584204.01380HepG2SRSF1
    FUBP3ENSG00000107164.151905.888001667.567900.192601.887901.35740HepG2SRSF5
    FUBP3ENSG00000107164.151396.462401644.90030-0.236202.126901.62360HepG2TAF15
    FUBP3ENSG00000107164.151583.868501133.635200.482406.406505.70400HepG2TIAL1
    FUBP3ENSG00000107164.15805.158801285.30860-0.674804.848502.93030HepG2TRA2A
    FUBP3ENSG00000107164.152003.103301649.997800.279702.410301.59920HepG2TUFM
    FUBP3ENSG00000107164.152112.376301723.859500.293102.428101.83630HepG2U2AF1
    FUBP3ENSG00000107164.151595.672402058.45480-0.367406.289205.30610HepG2UPF1
    FUBP3ENSG00000107164.15776.962701258.73870-0.696104.980803.26560HepG2XRCC5
    FUBP3ENSG00000107164.15898.602601193.99420-0.410002.914902.17040HepG2XRN2
    FUBP3ENSG00000107164.15991.261501476.06090-0.5744012.5506011.29130HepG2ZC3H8
    FUBP3ENSG00000107164.151612.745602263.91310-0.4893013.0176012.05290HepG2ZNF622
    FUBP3ENSG00000107164.153639.486302493.677900.545406.837705.98180K562AQR
    FUBP3ENSG00000107164.154751.222503844.367100.305503.902902.73470K562CELF1
    FUBP3ENSG00000107164.153656.223302889.239900.339606.178205.25870K562DDX47
    FUBP3ENSG00000107164.151682.512302185.05100-0.377005.364804.41130K562EIF2S2
    FUBP3ENSG00000107164.151443.002101006.203900.520102.746801.74840K562EIF3A
    FUBP3ENSG00000107164.15541.761701275.29200-1.2351031.9207027.56100K562FUBP3
    FUBP3ENSG00000107164.151934.697701405.812100.460607.545106.61190K562FXR1
    FUBP3ENSG00000107164.152470.962402988.87340-0.274502.205301.49280K562HSPD1
    FUBP3ENSG00000107164.153207.067702666.208100.266402.678501.78810K562MBNL1
    FUBP3ENSG00000107164.152183.168502440.66660-0.160902.217001.54150K562NSUN2
    FUBP3ENSG00000107164.151780.457801445.934500.300102.316901.42600K562PCBP2
    FUBP3ENSG00000107164.151882.770402502.33910-0.410404.025803.01180K562PPIG
    FUBP3ENSG00000107164.154505.042803411.333900.401104.195803.19700K562PUF60
    FUBP3ENSG00000107164.152786.139002408.220300.210202.265001.52100K562SF3A3
    FUBP3ENSG00000107164.151997.213001688.504700.242102.074401.36310K562SYNCRIP
    FUBP3ENSG00000107164.151693.139501280.083400.403404.747303.69900K562U2AF2
    FUBP3ENSG00000107164.152185.629002587.88550-0.243703.313002.53060K562UPF1
    FUBP3ENSG00000107164.152105.913602771.91100-0.396403.087701.81090K562UTP3
    FUBP3ENSG00000107164.153038.536602302.641800.400007.991206.62370K562WDR43
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    559 alternative splicing events after Knockdown/Knockout FUBP3 protein :

    Only display 100 entries as example. Please click "View All" button to see all 559 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SESPIRE2ENSG00000204991.6chr16+8990262289902841898951058989520289911729899117730.575000.000310.07006includedHepG2FUBP3
    SECHRDENSG00000090539.11chr3+1840988631840989181840984791840985831840990221840991520.425000.000170.04643includedHepG2FUBP3
    SECATENSG00000121691.4chr11+3447932234479394344782113447836434482797344829360.061000.000000.00086includedHepG2FUBP3
    SEC20orf96ENSG00000196476.7chr20-2701992703172646032647222708992709480.216000.000000.00085includedHepG2FUBP3
    SEKAT2AENSG00000108773.6chr17-4027107140271191402703144027042140271262402714540.233000.000030.01248includedHepG2FUBP3
    SEMGRN1ENSG00000102858.8chr16+4736259473630447338434733933473879647390400.303000.000000.00000includedHepG2FUBP3
    SENUP85ENSG00000125450.6chr17+7322509273225226732222027322225273227434732275180.216000.000000.00006includedHepG2FUBP3
    SETPM1ENSG00000140416.15chr15+6335391163353987633533966335347263354413633544760.130000.000000.00107includedHepG2FUBP3
    SEZNF207ENSG00000010244.12chr17+3069368330693776306923483069250630694790306950330.195000.000000.00006includedHepG2FUBP3
    SESREK1ENSG00000153914.11chr5+6545189265454760654492906544942465455046654551620.290000.000010.00345includedHepG2FUBP3
    SEAPOC1ENSG00000130208.5chr19+4541792845417990454175034541774645418128454182060.126000.000000.00000includedHepG2FUBP3
    SESF3B3ENSG00000189091.8chr16+7058455270584581705822727058234570588348705885000.064000.000280.06592includedHepG2FUBP3
    SEEDEM2ENSG00000088298.8chr20-3372190733721958337194443371958633722540337227520.237000.000130.03892includedHepG2FUBP3
    SESEC31AENSG00000138674.12chr4-8375208983752128837501528375021183763292837636340.145000.000140.04143includedHepG2FUBP3
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.364000.000000.00000includedHepG2FUBP3
    SESF3B1ENSG00000115524.11chr2-1982836191982836751982832321982833121982851511982852660.061000.000000.00238includedHepG2FUBP3
    SEMCF2LENSG00000126217.16chr13+1137454341137455091137439491137440421137488271137489490.166000.000050.01775includedHepG2FUBP3
    SEABCC6ENSG00000091262.10chr16-1624964816249711162487291624888816251519162516660.374000.000000.00000includedHepG2FUBP3
    SEANKHD1ENSG00000131503.16chr5+1399189431399190111399185541399186681399217561399218660.285000.000030.01121includedHepG2FUBP3
    SESAT1ENSG00000130066.12chrX+2380241023802520238019162380200023803444238035460.146000.000000.00000includedHepG2FUBP3
    SEAP1B1ENSG00000100280.12chr22-2972570029725709297236702972488429726366297265210.390000.000000.00073includedHepG2FUBP3
    SESRSF6ENSG00000124193.10chr20+4208779242088060420870004208714942088410420885350.219000.000070.02595includedHepG2FUBP3
    SESYNE4ENSG00000181392.10chr19-3649911836499269364980263649817036499455364996950.311000.000510.09920includedHepG2FUBP3
    SEHMGN1ENSG00000205581.6chr21-4071775540717884407170714071720040720217407202650.091000.000000.00000includedHepG2FUBP3
    SEMPGENSG00000103152.7chr16+1291371293301282551283321294231296990.211000.000030.01336includedHepG2FUBP3
    SESLC17A9ENSG00000101194.13chr20+6158449761584624615840586158424161588116615882880.123000.000000.00020includedHepG2FUBP3
    SEBCORENSG00000183337.12chrX-3993088939930943399302253993041239931601399344330.382000.000000.00000includedHepG2FUBP3
    SEKIAA1109ENSG00000138688.11chr4+1232375021232377031232366161232368431232378861232380170.238000.000170.04620includedHepG2FUBP3
    SETBCBENSG00000105254.7chr19+3661297836613075366124283661262036616352366164250.095000.000000.00082includedHepG2FUBP3
    SENASPENSG00000132780.12chr1+4606036546060445460568944605694246067926460680370.068000.000200.05118includedHepG2FUBP3
    SENASPENSG00000132780.12chr1+4607299246074009460721534607226346078840460789200.226000.000000.00003includedHepG2FUBP3
    SERBM38ENSG00000132819.12chr20+5596833455968389559677095596783355982598559843890.128000.000250.06262includedHepG2FUBP3
    SEENTPD6ENSG00000197586.8chr20+2520186725201969251991852519925025203473252036060.132000.000020.01050includedHepG2FUBP3
    SETCF25ENSG00000141002.14chr16+8994486889945035899400518994026789949758899499200.122000.000010.00554includedHepG2FUBP3
    SEWBP5ENSG00000185222.7chrX+1026120101026120891026113721026115341026125421026133970.140000.000450.09110includedHepG2FUBP3
    SETRIM15ENSG00000204610.8chr6+3013875230138785301382773013839330139608301404730.120000.000390.08251includedHepG2FUBP3
    SETIA1ENSG00000116001.11chr2-7045259670452700704516857045176170454866704549540.116000.000120.03692includedHepG2FUBP3
    SESTRA13ENSG00000169689.10chr17-7997751679977570799771687997725779977733799777850.191000.000120.03639includedHepG2FUBP3
    SEAP2M1ENSG00000161203.9chr3+1838984321838984381838979561838980391838986361838987720.072000.000280.06592includedHepG2FUBP3
    SESORBS1ENSG00000095637.16chr10-9718194697181973971817179718183097192204971923330.383000.000000.00209includedHepG2FUBP3
    SEABCC2ENSG00000023839.6chr10+1015768201015769531015727741015729011015770641015772410.171000.000030.01324includedHepG2FUBP3
    SEALDH2ENSG00000111275.8chr12+1122134081122135241122047511122049001122197211122198260.075000.000030.01283includedHepG2FUBP3
    SEHNMTENSG00000150540.9chr2+1387598531387599131387596331387597641387627011387627950.123000.000060.02043includedHepG2FUBP3
    SESSBP3ENSG00000157216.11chr1-5472374154723822547227995472285954747110547472000.266000.000440.09046includedHepG2FUBP3
    SEBPIFB2ENSG00000078898.6chr20+3159600531596184315954053159556631596346315964890.149000.000000.00000includedHepG2FUBP3
    SEDHRS2ENSG00000100867.10chr14+2411087424110988241090022410910424112360241124280.089000.000000.00000includedHepG2FUBP3
    SEMBNL2ENSG00000139793.14chr13+9801871298018807980097359800988998043575980463740.212000.000370.08017includedHepG2FUBP3
    SECOPS5ENSG00000121022.9chr8-6795991967960094679580466795819567963464679635760.108000.000010.00537includedHepG2FUBP3
    SELUC7LENSG00000007392.12chr16-2585992586632580762581872706472707460.242000.000020.00780includedHepG2FUBP3
    SEPCED1AENSG00000132635.12chr20-2816684281696028159592816355281887728191240.088000.000330.07274includedHepG2FUBP3
    SEPTP4A3ENSG00000184489.7chr8+1424378491424379241424370381424371691424410261424416200.147000.000000.00176includedHepG2FUBP3
    SEPHPT1ENSG00000054148.13chr9+1397449541397450121397444641397445891397452061397454760.083000.000000.00000includedHepG2FUBP3
    SEAMDHD1ENSG00000139344.3chr12+9634946096349600963486889634875396350462963507400.324000.000160.04528includedHepG2FUBP3
    SECEACAM1ENSG00000079385.17chr19-4301572743015780430150404301507243016501430166310.227000.000000.00082includedHepG2FUBP3
    SEETV4ENSG00000175832.8chr17-4162234241622379416136834161384741622641416227350.778000.000040.01405includedHepG2FUBP3
    SECPNE1ENSG00000214078.7chr20-3424685134246936342207163422084534252723342527590.142000.000160.04528includedHepG2FUBP3
    SEFN1ENSG00000115414.14chr2-2162576532162579262162563542162565372162592502162594420.073000.000000.00000includedHepG2FUBP3
    SESORBS2ENSG00000154556.13chr4-1865729371865729821865706201865708101865738151865738820.245000.000300.06951includedHepG2FUBP3
    SENOP58ENSG00000055044.6chr2+2031647012031648602031625672031626292031649562031650900.086000.000300.06951includedHepG2FUBP3
    SERBM39ENSG00000131051.16chr20-3432844634328519343268893432693934328745343288090.158000.000000.00030includedHepG2FUBP3
    SEHDLBPENSG00000115677.12chr2-2422082432422084812422078912422079562422121752422122460.101000.000060.02177includedHepG2FUBP3
    SEBPHLENSG00000137274.8chr6+3150256315037931406193140743315272131532800.058000.000140.04056includedHepG2FUBP3
    SEHOXD-AS1ENSG00000224189.2chr2-1770424381770425841770420591770422221770531461770532590.386000.000010.00439includedHepG2FUBP3
    SECSNK1DENSG00000141551.10chr17-8020757380208055802073068020747880209254802092900.414000.000000.00000includedHepG2FUBP3
    SERRN3ENSG00000085721.8chr16-1518022115180311151799851518011515185171151852280.303000.000000.00025includedHepG2FUBP3
    SEGSDMBENSG00000073605.14chr17-3806521038065295380623633806252438066008380661770.455000.000020.01050includedHepG2FUBP3
    SESULT1C4ENSG00000198075.5chr2+1089995481089996751089981671089983431089998711089999660.236000.000160.04558includedHepG2FUBP3
    SECANT1ENSG00000171302.12chr17-7699618176996352769939217699404577005745770058750.404000.000000.00123includedHepG2FUBP3
    SEKIAA0195ENSG00000177728.10chr17+7348831973488418734878377348798173488554734888230.132000.000500.09721includedHepG2FUBP3
    SECCDC92ENSG00000119242.4chr12-1244288181244289111244278931244280401244570751244573710.496000.000400.08360includedHepG2FUBP3
    SEBROXENSG00000162819.7chr1+2228884862228886112228859002228862842228890252228891420.832000.000010.00702includedHepG2FUBP3
    SEGNASENSG00000087460.19chr20+5747399557474040574706665747073957478585574786400.104000.000220.05541includedHepG2FUBP3
    SEFBXO44ENSG00000132879.9chr1+1171538411715756117149131171500911715862117161570.539000.000080.02595includedHepG2FUBP3
    SESRSF11ENSG00000116754.9chr1+7069754170697658706941047069423870697950706980580.295000.000000.00000includedHepG2FUBP3
    SESREBF2ENSG00000198911.7chr22+4229602342296126422946524229478542296333422965020.076000.000000.00032includedHepG2FUBP3
    SESREBF2ENSG00000198911.7chr22+4227466242274762422739454227412742276719422769960.131000.000200.05196includedHepG2FUBP3
    SEMTO1ENSG00000135297.11chr6+7419001574190090741896587418984974190397741905280.267000.000380.08222includedHepG2FUBP3
    SEMTO1ENSG00000135297.11chr6+7418118274181280741762117417632974183087741831970.107000.000310.06968includedHepG2FUBP3
    SEMARCH7ENSG00000136536.10chr2+1606211361606211851606193901606195041606237941606238800.123000.000000.00019includedHepG2FUBP3
    SEBMP1ENSG00000168487.13chr8+2205677622056900220547522205493322058630220587130.435000.000460.09156includedHepG2FUBP3
    SETIAL1ENSG00000151923.13chr10-1213363581213364171213361221213362621213365911213366970.208000.000000.00000includedHepG2FUBP3
    SELGR5ENSG00000139292.8chr12+7194685271947068719288947192896671950398719504700.117000.000140.04072includedHepG2FUBP3
    SERBMS1ENSG00000153250.13chr2-1611387671611388151611378241611378751611412851611413790.164000.000100.03296includedHepG2FUBP3
    SEPCBP2ENSG00000197111.11chr12+5386158853861627538610045386107753862560538626160.104000.000040.01689includedHepG2FUBP3
    SESEPT6ENSG00000125354.18chrX-1187592971187593421187526751187527491187632801187634710.291000.000370.08058includedHepG2FUBP3
    SECARM1ENSG00000142453.7chr19+1103205011032119110317251103180311032290110334480.232000.000000.00094includedHepG2FUBP3
    SEUSMG5ENSG00000173915.8chr10-105155502105155789105152127105152223105156165105156198-0.115000.000020.00780excludedHepG2FUBP3
    SESAR1BENSG00000152700.9chr5-133967766133967885133959651133959727133968417133968464-0.165000.000080.02595excludedHepG2FUBP3
    SETMEM63BENSG00000137216.14chr6+441030644410310344102753441028334410408544104176-0.119000.000070.02595excludedHepG2FUBP3
    SEPLOD2ENSG00000152952.7chr3-145795648145795711145794568145794682145796902145797044-0.091000.000120.03692excludedHepG2FUBP3
    SEUAP1ENSG00000117143.9chr1+162562521162562572162560112162560301162567581162567648-0.185000.000380.08222excludedHepG2FUBP3
    SETEX261ENSG00000144043.7chr2-712189597121911371216706712169467122082571220905-0.152000.000100.03078excludedHepG2FUBP3
    SESLC26A6ENSG00000225697.6chr3-486696774866982948669312486694774867040648670465-0.129000.000490.09583excludedHepG2FUBP3
    SENDUFV3ENSG00000160194.13chr21+443232914432438644317036443171574432897344329215-0.074000.000000.00170excludedHepG2FUBP3
    SEQPRTENSG00000103485.13chr16+297059842970607629690502296905312970831629708448-0.099000.000350.07794excludedHepG2FUBP3
    SEABCC6ENSG00000091262.10chr16-163141291631424516313678163138041631550516315688-0.133000.000120.03706excludedHepG2FUBP3
    SEMLLT4ENSG00000130396.16chr6+168314082168314103168311963168312169168314847168314993-0.094000.000010.00688excludedHepG2FUBP3
    SEAHSGENSG00000145192.8chr3+186336079186336280186334975186335139186338374186339107-0.167000.000030.01248excludedHepG2FUBP3
    SEARHGEF10LENSG00000074964.12chr1+179610421796105717958815179589611796132917961511-0.425000.000000.00000excludedHepG2FUBP3
    SEEPB41ENSG00000159023.14chr1+293869332938699629379615293798242939149329391670-0.226000.000190.04980excludedHepG2FUBP3





    21 RBPs can affect the splicing of FUBP3 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEFUBP3ENSG00000107164.15chr9+1334859131334859901334853401334853741334878421334878920.206000.000040.00143includedK562SRSF1
    SEFUBP3ENSG00000107164.15chr9+1334690291334692741334549921334551511334708691334709750.059000.000240.00643includedK562SRSF1
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.081000.000390.01796includedK562PRPF8
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.141000.000010.00168includedHepG2RBM22
    SEFUBP3ENSG00000107164.15chr9+1334690521334692741334549921334551511334708691334709750.051000.001360.02660includedHepG2U2AF1
    SEFUBP3ENSG00000107164.15chr9+133507588133507665133507301133507409133510053133510125-0.067000.003710.05979excludedHepG2U2AF1
    SEFUBP3ENSG00000107164.15chr9+133470869133470975133454992133455151133485340133485374-0.063000.000450.01043excludedHepG2U2AF1
    SEFUBP3ENSG00000107164.15chr9+133506547133506680133506014133506175133506943133507017-0.179000.000000.00002excludedHepG2U2AF2
    SEFUBP3ENSG00000107164.15chr9+1334859131334859901334853401334853741334878421334878920.112000.002940.03011includedK562AQR
    SEFUBP3ENSG00000107164.15chr9+1335100531335101251335075881335076651335113851335115130.107000.000150.00243includedK562AQR
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.160000.000000.00001includedK562AQR
    SEFUBP3ENSG00000107164.15chr9+133489674133489732133488342133488414133491741133491904-0.052000.000070.00118excludedK562AQR
    SEFUBP3ENSG00000107164.15chr9+133507483133507665133507301133507409133511385133511513-0.495000.000970.01189excludedK562AQR
    SEFUBP3ENSG00000107164.15chr9+133487842133487892133470869133470975133488342133488414-0.055000.001200.01423excludedK562AQR
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.088000.000330.06629includedK562HNRNPA1
    SEFUBP3ENSG00000107164.15chr9+1335100531335101251335075881335076651335113851335115130.078000.000040.00115includedK562PUS1
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.095000.002310.09726includedHepG2PTBP1
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.058000.000210.05119includedK562GPKOW
    SEFUBP3ENSG00000107164.15chr9+133510053133510125133507588133507665133511385133511513-0.147000.000000.00123excludedK562APOBEC3C
    SEFUBP3ENSG00000107164.15chr9+133510053133510125133507588133507665133511385133511513-0.082000.001170.07160excludedK562HNRNPL
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.132000.000020.00968includedHepG2CDC40
    SEFUBP3ENSG00000107164.15chr9+133506547133506680133506014133506175133506943133507017-0.072000.000560.04310excludedHepG2TIAL1
    SEFUBP3ENSG00000107164.15chr9+133510053133510125133507588133507665133511385133511513-0.239000.000000.00064excludedHepG2TIAL1
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.120000.000110.00760includedHepG2SF3B4
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.072000.001620.05421includedK562HNRNPU
    SEFUBP3ENSG00000107164.15chr9+1334859131334859901334853431334853741334878421334878920.353000.000500.02344includedK562SF3B1
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.083000.000000.00025includedK562SF3B1
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.364000.000000.00000includedHepG2FUBP3
    SEFUBP3ENSG00000107164.15chr9+1334859131334859901334853401334853741334878421334878920.183000.000240.08882includedK562NCBP2
    SEFUBP3ENSG00000107164.15chr9+133485340133485374133470869133470975133487842133487892-0.085000.000270.01566excludedHepG2HNRNPU
    SEFUBP3ENSG00000107164.15chr9+133510053133510125133507588133507665133511385133511513-0.159000.000570.02503excludedHepG2HNRNPC
    SEFUBP3ENSG00000107164.15chr9+133510053133510125133507588133507665133511385133511513-0.127000.000210.05048excludedK562SAFB
    A5SSFUBP3ENSG00000107164.15chr9+1335060141335062371335060141335061751335069431335070170.152000.000000.00000longerK562AQR
    MXEFUBP3ENSG00000107164.15chr9+1335075881335076651335100531335101251335073281335074091335113851335115130.231000.000890.031811includedK562PTBP1
    MXEFUBP3ENSG00000107164.15chr9+133507588133507665133510053133510125133507328133507409133511385133511513-0.122000.001130.022282includedK562PUS1
    MXEFUBP3ENSG00000107164.15chr9+1335073011335074091335075881335076651335069431335070171335100531335101250.079000.000560.005521includedK562AQR
    MXEFUBP3ENSG00000107164.15chr9+133489674133489732133491741133491948133488342133488414133493183133493282-0.056000.000020.000232includedK562AQR
    MXEFUBP3ENSG00000107164.15chr9+133507613133507665133510053133510125133507328133507409133511385133511513-0.118000.000150.001772includedK562AQR
    MXEFUBP3ENSG00000107164.15chr9+133507483133507665133510053133510125133507328133507409133511385133511513-0.113000.000070.000832includedK562AQR
    MXEFUBP3ENSG00000107164.15chr9+133507478133507665133510053133510125133507328133507409133511385133511513-0.111000.000070.000852includedK562AQR

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The FUBP3 protein affects to its own RNA splicing after knockdown/knockout.

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEFUBP3ENSG00000107164.15chr9+1335065471335066801335060141335061751335069431335070170.364000.000000.00000includedHepG2FUBP3