PLOD2

General Information

Gene Name : PLOD2
Gene ID : ENSG00000152952.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PLOD2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PLOD2	ENSG00000152952.11	0.01	0.02	0.01	ENCSR000AEF
HepG2	PLOD2	ENSG00000152952.11	48.22	105.64	76.93	ENCSR985KAT
K562	PLOD2	ENSG00000152952.11	0.42	0.37	0.40	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PLOD2 is not avaliable on ENCORE database.

Proteins bound to RNA

PLOD2 RNA is bound by 24 proteins.

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eCLIP assay for PLOD2 is not avaliable on ENCORE database.

24 proteins are bound to PLOD2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	145878775	145878875	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.74403	400.00000	HepG2	DDX3X
chr3	145878714	145878775	-	5'-UTR,CDS,intron-Distal	5.18859	75.24741	HepG2	DDX3X
chr3	145878875	145878903	-	5'-UTR,intron-Distal,intron-Proximal	5.37513	72.83033	HepG2	DDX3X
chr3	145828177	145828236	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.76024	68.06759	HepG2	BCLAF1
chr3	145878670	145878713	-	5'-UTR,CDS,intron-Distal	4.51293	53.28672	HepG2	DDX3X
chr3	145878903	145878952	-	5'-UTR,intron-Distal	4.89368	52.08860	HepG2	DDX3X
chr3	145790373	145790421	-	CDS,intron-Distal	3.52127	34.34200	HepG2	BCLAF1
chr3	145838910	145838937	-	3'-UTR,CDS,intron-Distal	4.70861	33.39883	HepG2	BCLAF1
chr3	145838897	145838910	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.91924	33.26610	HepG2	BCLAF1
chr3	145802974	145803006	-	CDS,intron-Distal	4.08413	28.30426	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 131 entries

eCLIP assay for PLOD2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PLOD2 is not available on ENCORE database.
133 RBPs can affect the levels of PLOD2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PLOD2 is not available on ENCORE database.

133 RBPs can affect the gene expression of PLOD2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PLOD2	ENSG00000152952.7	3797.72390	18598.36310	-2.29200	99999.99999	99999.99999	HepG2	PUM1
PLOD2	ENSG00000152952.7	6381.37290	23171.71760	-1.86040	252.39240	249.85710	HepG2	SRSF1
PLOD2	ENSG00000152952.7	5054.99460	21323.29060	-2.07660	246.69890	243.46350	HepG2	PTBP1
PLOD2	ENSG00000152952.7	3142.21810	14038.89960	-2.15960	159.17660	156.42200	HepG2	TIAL1
PLOD2	ENSG00000152952.7	8617.82700	23730.34730	-1.46130	136.72280	134.45390	HepG2	NELFE
PLOD2	ENSG00000152952.7	6912.73010	15004.91610	-1.11810	128.03810	125.11730	HepG2	SMN1
PLOD2	ENSG00000152952.7	2279.36400	23134.60240	-3.34330	117.95530	114.17740	HepG2	EIF4B
PLOD2	ENSG00000152952.7	4798.93290	13688.43640	-1.51220	115.24330	112.54480	HepG2	PUS1
PLOD2	ENSG00000152952.7	9099.66010	22199.37440	-1.28660	109.81590	107.16950	HepG2	SF3B4
PLOD2	ENSG00000152952.7	5322.60800	13122.09990	-1.30180	80.34810	78.57600	HepG2	SSB
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 138 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PLOD2 is not available on ENCORE database.

32 RBPs can affect the splicing of PLOD2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PLOD2	ENSG00000152952.7	chr3	-	145795648	145795711	145794568	145794682	145796902	145797044	0.27200	0.00000	included	HepG2	G3BP1
SE	PLOD2	ENSG00000152952.7	chr3	-	145795648	145795711	145794568	145794682	145796902	145797044	0.60400	0.00000	included	HepG2	HNRNPK
SE	PLOD2	ENSG00000152952.7	chr3	-	145795648	145795711	145794568	145794682	145796902	145797044	0.28900	0.00007	included	HepG2	U2AF2
SE	PLOD2	ENSG00000152952.7	chr3	-	145795648	145795711	145794568	145794682	145796902	145797044	0.17600	0.00000	included	HepG2	AKAP1
SE	PLOD2	ENSG00000152952.7	chr3	-	145795648	145795711	145794568	145794682	145796902	145797044	0.19000	0.00000	included	HepG2	BCLAF1
SE	PLOD2	ENSG00000152952.7	chr3	-	145795648	145795711	145794568	145794682	145796902	145797044	0.33600	0.00000	included	HepG2	PTBP1
SE	PLOD2	ENSG00000152952.7	chr3	-	145795648	145795711	145794568	145794682	145796902	145797044	0.25700	0.00000	included	HepG2	UPF1
SE	PLOD2	ENSG00000152952.7	chr3	-	145795648	145795711	145794568	145794682	145796902	145797044	0.26600	0.00000	included	HepG2	IGF2BP3
SE	PLOD2	ENSG00000152952.7	chr3	-	145795648	145795711	145794568	145794682	145796902	145797044	0.24900	0.00000	included	HepG2	SUPV3L1
SE	PLOD2	ENSG00000152952.7	chr3	-	145795648	145795711	145794568	145794682	145796902	145797044	0.17200	0.00000	included	HepG2	PCBP1

Showing 1 to 10 of 55 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PLOD2

General Information

Functions

Localization

Domains (AlphaFold: PLOD2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PLOD2 is not avaliable on ENCORE database.

24 proteins are bound to PLOD2 RNA:

eCLIP assay for PLOD2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PLOD2 is not available on ENCORE database.

133 RBPs can affect the gene expression of PLOD2 :

The Knockdown/knockout RNA-Seq assay for PLOD2 is not available on ENCORE database.

32 RBPs can affect the splicing of PLOD2 :

The Knockdown/knockout RNA-Seq assay for PLOD2 is not avaliable on ENCORE database.