ABCF1

General Information

Gene Name       : ABCF1
Gene ID             : ENSG00000204574.12
Essential Gene : Yes

Functions

Localization(RBPImage: ABCF1)

Domains (AlphaFold: ABCF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ABCF1ENSG00000204574.1243.1854.1448.66ENCSR000AEF
HepG2ABCF1ENSG00000204574.1297.7082.3490.02ENCSR985KAT
K562ABCF1ENSG00000204574.12140.16129.77134.97ENCSR000AEO

Assays

3 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 734ENCSR089BXOABCF1K562ReleasedENCAB710VEDENCSR857ORY  
knockdown followed by RNA-seq ABCF1-BGKLV29-K562ENCSR721MXZABCF1K562ReleasedENCSR032YMP   shRNAKD% = 69.0,69.7
knockdown followed by RNA-seq ABCF1-BGHLV30-HepG2ENCSR610VTAABCF1HepG2ReleasedENCSR067GHD   shRNAKD% = 80.3,78.6






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
ABCF1734K562ENCSR089BXOENCSR857ORYENCAB710VEDA301-999A1ReleasedENCODE4


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
ABCF1ENCAB710VEDA301-999A1Released, ENCODE3BGHLV30-3, Released, ENCODE3BGKLV29-3, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ABCF1K562shRNAENCSR721MXZENCSR032YMPABCF1_BGKLV29-3,ABCF1_BGKLV29-4NT_BGKLV29-1,NT_BGKLV29-269.0,69.7ReleasedENCODE3
ABCF1HepG2shRNAENCSR610VTAENCSR067GHDABCF1_BGHLV30-3,ABCF1_BGHLV30-4NT_BGHLV30-1,NT_BGHLV30-280.3,78.6ReleasedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    ABCF1: Click to RBP Image Database
  • Nuclei
  • Nucleolus
  • Cytoplasm
  • Compartment/Organelle
  • Mitochondria
  • Cell Cortex












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    ABCF1Product_ID: A301-999A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: ABCF1-human    		 ABCF1-HEPG2.png<br>Caption: Western blot following shRNA against ABCF1 in HepG2 whole cell lysate using ABCF1 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against ABCF1.ABCF1 protein appears as the green band, Tubulin serves as a control and appears in red.
    		 K562_Bethyl_A301-999A_1_ABCF1.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using ABCF1 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-ABCF1 antibody (lanes under 'ABCF1').
    		 ABCF1-K562.png<br>Caption: Western blot following shRNA against ABCF1 in K562 whole cell lysate using ABCF1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against ABCF1. ABCF1 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.








    RNA Targets
    • ABCF1 protein binds to 55 RNA regions.  





    Proteins bound to RNA
    • ABCF1 RNA is bound by 35 proteins.  






    ABCF1 protein has 55 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 55 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    ABCF1chr103562562135625713+4.195926.25092K562CCNYintron-Distal
    ABCF1chr139200065392000689+3.075424.34275K562MIR17HGintron-Distal
    ABCF1chr112844701284523-3.135957.69340K562DVL15'-UTR,intron-Distal,intron-Proximal
    ABCF1chr9139734926139735004+3.930665.16194K562RABL63'-UTR,CDS,intron-Proximal
    ABCF1chr1628093722809401+3.031274.49144K562SRRM2CDS
    ABCF1chr63180303731803047+3.225374.47766K562C6orf48intron-Distal,intron-Proximal
    ABCF1chr191281443812814489-3.011347.50862K562TNPO2intron-Distal,intron-Proximal
    ABCF1chr1722324592232488-3.3064714.86748K562TSR1intron-Distal
    ABCF1chr2203141152203141217+4.8343412.16984K562NOP58intron-Distal
    ABCF1chr2203142832203142879+3.136699.73018K562NOP58intron-Distal,intron-Proximal
    ABCF1chr8144940490144940702-3.4833943.29510K562EPPK1CDS,intron-Distal
    ABCF1chr817801871780276+5.367904.49804K562ARHGEF10intron-Distal
    ABCF1chr63180304731803077+3.320185.29406K562C6orf485'-UTR,intron-Distal,intron-Proximal
    ABCF1chr168569009985690236+3.559368.08357K562GSE1CDS
    ABCF1chr896297389629802+5.202824.74220K562TNKSintron-Distal,intron-Proximal
    ABCF1chr5648070648152+4.280883.46318K562CEP72intron-Distal,intron-Proximal
    ABCF1chr5137896764137896766-3.0504014.46045K562HSPA9intron-Distal
    ABCF1chr171634287016342936+3.8751510.59195K562C17orf76-AS1intron-Distal,intron-Proximal
    ABCF1chr5137896792137896799-3.0996013.84433K562HSPA9intron-Distal
    ABCF1chr222180027321800339+3.458954.72525K562HIC2CDS
    ABCF1chr168896019288960277-4.223143.89029K562CBFA2T3intron-Distal
    ABCF1chr178004527580045313-3.124648.19150K562FASNCDS,intron-Distal
    ABCF1chr74514434145144438-3.301156.70536K562TBRG4intron-Distal,intron-Proximal
    ABCF1chr12110719410110719563+3.0019110.72253K562ATP2A25'-UTR,intron-Distal
    ABCF1chr6133136452133136483+3.7421313.75731K562RPS12intron-Distal,intron-Proximal
    ABCF1chr5651515651616+6.041869.58866K562CEP72intron-Distal
    ABCF1chr12890529228905333-4.6268210.36604K562SNHG12intron-Distal
    ABCF1chrX2015432020154409-3.860573.69615K562EIF1AXintron-Distal
    ABCF1chr9100777688100777736+3.231708.19150K562ANP32B3'-UTR,CDS
    ABCF1chr5137896776137896792-3.0996013.84433K562HSPA9intron-Distal
    ABCF1chr1984993985070+3.085594.64607K562AGRNCDS
    ABCF1chr1234744898234744971-3.189937.76988K562IRF2BP2CDS,intron-Distal
    ABCF1chr172704756327047625+3.3922619.14606K562RPL23A5'-UTR,intron-Distal
    ABCF1chr5137896766137896776-3.0767814.64054K562HSPA9intron-Distal
    ABCF1chr12890734728907386-3.723143.54619K562SNHG12intron-Distal
    ABCF1chr191022043910220449+3.604277.82347K562PPAN-P2RY11, PPANintron-Proximal
    ABCF1chr119345490193455012+3.2070247.17521K562KIAA1731intron-Distal
    ABCF1chr139200077792000858+4.0029714.32157K562MIR17HGintron-Distal
    ABCF1chr119345467893454774+3.1004123.24399K562KIAA1731intron-Distal
    ABCF1chr13144104331441065-3.369235.49713K562PUM1intron-Distal,intron-Proximal
    ABCF1chr74514423645144341-3.4969817.04962K562TBRG4CDS,intron-Distal,intron-Proximal
    ABCF1chr222352277823522841+4.1157510.49480K562BCR5'-UTR,intron-Distal
    ABCF1chr1940373234037373+3.945546.28146K562PIAS4CDS,intron-Proximal
    ABCF1chr1939825363982562-3.693706.11930K562EEF2intron-Distal,intron-Proximal
    ABCF1chr191022044910220472+3.554638.63937K562PPAN, PPAN-P2RY11intron-Proximal
    ABCF1chrX2015423520154320-3.1866112.56952K562EIF1AXintron-Distal
    ABCF1chr12123994842123994932-3.860573.69615K562RILPL1intron-Distal
    ABCF1chr172704959927049611+3.3919414.06246K562RPL23Aintron-Distal
    ABCF1chr13144106631441080-3.550405.89802K562PUM1intron-Distal,intron-Proximal
    ABCF1chr9136217701136217737+3.1960416.96102K562RPL7Aintron-Distal
    ABCF1chr221941902419419168-3.082676.47196K562HIRA, C22orf395'-UTR,intron-Distal
    ABCF1chr896295749629689+5.681915.48931K562TNKSintron-Distal
    ABCF1chr168902341989023508-5.299155.48931K562CBFA2T3intron-Distal
    ABCF1chr1173836029173836079-3.1004810.90260K562GAS5intron-Distal,intron-Proximal
    ABCF1chr172705070827050730+4.736387.43081K562RPL23ACDS,intron-Proximal




    35 proteins are bound to ABCF1 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr63055896630559026+3'-UTR,intron-Proximal5.177487.93248K562RBM15
    chr63055883230558906+3'-UTR5.067926.29854K562UPF1
    chr63055840030558483+3'-UTR,CDS4.215707.34858HepG2RBM15
    chr63054559730545677+3'-UTR,CDS3.178944.43060HepG2FXR2
    chr63054564730545688+3'-UTR,CDS4.258063.11282HepG2G3BP1
    chr63054585630545959+3'-UTR,CDS,intron-Proximal3.0208322.43851K562PUM1
    chr63054559830545688+3'-UTR,CDS4.187187.03021HepG2TRA2A
    chr63055850930558569+3'-UTR3.663538.08165HepG2RBM15
    chr63054559630545677+3'-UTR,CDS6.2461213.23445HepG2BCLAF1
    chr63054560630545681+3'-UTR,CDS3.294825.00238K562SRSF1
    chr63054589230545967+3'-UTR,CDS,intron-Proximal5.9132342.17581K562UCHL5
    chr63055866330558728+3'-UTR4.392717.43980K562IGF2BP1
    chr63054592630545978+3'-UTR,CDS,intron-Proximal3.469127.75026HepG2GRWD1
    chr63054585530545908+3'-UTR,CDS3.054677.25626HepG2AQR
    chr63055865530558722+3'-UTR5.210318.98006K562RBM15
    chr63055874830558806+3'-UTR3.959513.74246K562ZC3H11A
    chr63054562230545679+3'-UTR,CDS4.373514.00109HepG2FASTKD2
    chr63055888930558939+3'-UTR,intron-Proximal3.018783.05408HepG2UPF1
    chr63054559430545683+3'-UTR,CDS,intron-Proximal4.487539.35085K562TRA2A
    chr63055879030558880+3'-UTR4.796255.14974HepG2UPF1
    chr63054560830545690+3'-UTR,CDS4.5798835.06920K562UCHL5
    chr63054560330545677+3'-UTR,CDS4.233078.94272HepG2GRWD1
    chr63054559630545608+3'-UTR,CDS4.7098217.73437K562UCHL5
    chr63055881430558876+3'-UTR3.598177.39702K562RBM15
    chr63054590530545982+3'-UTR,CDS,intron-Proximal3.966587.61375HepG2ZNF800
    chr63055890630559044+3'-UTR,intron-Distal,intron-Proximal4.7244310.23575K562UPF1
    chr63054586230545956+3'-UTR,CDS,intron-Proximal3.556834.27226HepG2FTO
    chr63054589830545942+3'-UTR,CDS5.0594021.88422K562ZNF622
    chr63054589730545971+3'-UTR,CDS,intron-Proximal4.456115.53098HepG2FXR2
    chr63055842030558478+3'-UTR,CDS4.002404.70007K562FXR2
    chr63055851030558588+3'-UTR3.8511110.25633K562RBM15
    chr63054559030545691+3'-UTR,CDS,intron-Proximal3.4302722.06329HepG2AQR
    chr63055887630558928+3'-UTR3.956933.45275HepG2LARP4
    chr63054587130545980+3'-UTR,CDS,intron-Proximal3.180176.27464K562TRA2A
    chr63054560130545672+3'-UTR,CDS4.4843020.84762K562ZNF622
    chr63055851630558580+3'-UTR4.230533.45012HepG2UPF1
    chr63053931230539325+5'-UTR,CDS3.847637.79255K562UCHL5
    chr63053923030539335+5'-UTR,CDS3.716633.59926K562DDX3X
    chr63053925730539337+5'-UTR,CDS4.233278.80468K562TRA2A
    chr63053933230539374+5'-UTR,CDS,intron-Proximal3.648417.17852HepG2AQR
    chr63053929730539330+5'-UTR,CDS3.188418.41511K562ZNF622
    chr63055192830551993+CDS,intron-Distal,intron-Proximal4.690549.10443HepG2PRPF8
    chr63054627730546369+CDS,intron-Distal,intron-Proximal5.145275.88588HepG2TRA2A
    chr63055084230550938+CDS,intron-Distal,intron-Proximal7.6544353.15288K562UCHL5
    chr63055017630550275+CDS,intron-Distal3.1941921.54860K562GRWD1
    chr63055834230558383+CDS4.236254.25741HepG2G3BP1
    chr63054625630546280+CDS,intron-Distal3.623035.74981HepG2GRWD1
    chr63055084330550893+CDS,intron-Distal4.041827.24602HepG2GRWD1
    chr63054612330546156+CDS,intron-Distal,intron-Proximal3.4196211.99038K562ZNF800
    chr63055441630554502+CDS,intron-Distal,intron-Proximal3.447696.39581HepG2EFTUD2
    chr63055444230554486+CDS,intron-Distal3.841978.07380HepG2GRWD1
    chr63054625830546342+CDS,intron-Distal4.6613924.59039K562ZNF622
    chr63054612130546203+CDS,intron-Distal,intron-Proximal3.509749.25476HepG2PRPF8
    chr63054612430546154+CDS,intron-Distal,intron-Proximal4.2000214.25049K562ZNF622
    chr63055836430558390+CDS4.436564.15208K562RBM15
    chr63055017030550183+CDS,intron-Distal,intron-Proximal3.042625.77981K562TRA2A
    chr63055019030550269+CDS,intron-Distal4.723485.69206K562CPEB4
    chr63055197030551998+CDS,intron-Distal4.789246.03821HepG2GRWD1
    chr63055022230550279+CDS,intron-Distal5.8981312.56307HepG2BCLAF1
    chr63055746530557481+CDS,intron-Distal4.073443.11282HepG2G3BP1
    chr63055333530553375+CDS,intron-Distal3.427067.65887HepG2GRWD1
    chr63054630230546353+CDS,intron-Distal3.9956817.66426K562UCHL5
    chr63055202030552089+CDS,intron-Distal4.180204.31023HepG2LIN28B
    chr63055019830550284+CDS,intron-Distal3.932619.60693HepG2G3BP1
    chr63055213630552212+CDS,intron-Distal,intron-Proximal4.9681814.08818HepG2EFTUD2
    chr63054625730546289+CDS,intron-Distal4.6988421.44620K562UCHL5
    chr63055745330557507+CDS,intron-Distal,intron-Proximal3.196908.22619K562EFTUD2
    chr63055017030550259+CDS,intron-Distal,intron-Proximal3.481784.45747HepG2TRA2A
    chr63055774930557792+CDS,intron-Proximal4.247767.08947HepG2PRPF8
    chr63054594430545970+CDS,intron-Proximal3.197495.00751HepG2BCLAF1
    chr63055362830553671+CDS,intron-Distal,intron-Proximal4.876005.32906HepG2AQR
    chr63055018330550249+CDS,intron-Distal4.773446.04040HepG2SRSF1
    chr63055133730551395+CDS,intron-Distal,intron-Proximal3.852169.49597K562PRPF8
    chr63055194730551982+CDS,intron-Distal,intron-Proximal3.251814.50819HepG2AQR
    chr63055084430550861+CDS,intron-Distal4.599419.61116K562ZNF622
    chr63054820330548297+CDS,intron-Distal,intron-Proximal3.189136.76493K562TRA2A
    chr63055403930554065+CDS,intron-Distal3.175704.50748HepG2GRWD1
    chr63055345830553468+CDS,intron-Distal,intron-Proximal4.8344813.90015K562AQR
    chr63055794830557967+CDS3.667215.86107HepG2PPIG
    chr63055334730553391+CDS,intron-Distal3.912708.40792HepG2PPIG
    chr63054628030546304+CDS,intron-Distal3.706085.96568HepG2GRWD1
    chr63055444730554488+CDS,intron-Distal3.598434.04629HepG2G3BP1
    chr63055747630557490+CDS,intron-Distal3.849946.06308HepG2PPIG
    chr63054518330545232+CDS,intron-Distal,intron-Proximal4.577386.46081K562TRA2A
    chr63055018730550262+CDS,intron-Distal3.689355.26921K562MTPAP
    chr63055407630554099+CDS,intron-Distal,intron-Proximal4.1252010.32093HepG2PRPF8
    chr63055018230550280+CDS,intron-Distal3.919177.65887HepG2GRWD1
    chr63055193530551997+CDS,intron-Distal,intron-Proximal3.8039213.51777K562AQR
    chr63054612430546161+CDS,intron-Distal,intron-Proximal6.7762424.58044K562UCHL5
    chr63055089230550942+CDS,intron-Distal3.0385411.03347K562ZNF622
    chr63055085830550935+CDS,intron-Distal3.119268.98582K562PUM1
    chr63054818330548205+CDS,intron-Distal3.392923.80498K562PUM1
    chr63055166530551717+CDS,intron-Distal,intron-Proximal3.785358.08346HepG2PRPF8
    chr63054826230548297+CDS,intron-Distal,intron-Proximal3.671244.01301HepG2FTO
    chr63055020130550257+CDS,intron-Distal3.307649.91328HepG2PPIG
    chr63055086130550892+CDS,intron-Distal3.7555614.17655K562ZNF622
    chr63054612430546159+CDS,intron-Distal,intron-Proximal3.335319.02397K562GRWD1
    chr63055217030552203+CDS,intron-Distal,intron-Proximal3.581727.39410K562BUD13
    chr63055018230550275+CDS,intron-Distal5.5219153.45525K562UCHL5
    chr63055442130554442+CDS,intron-Distal3.929297.27605HepG2GRWD1
    chr63055305830553106+CDS,intron-Distal4.277484.54659HepG2G3BP1
    chr63055154130551589+CDS,intron-Distal,intron-Proximal4.193165.26108K562SF3B4
    chr63054628930546302+CDS,intron-Distal4.5084117.85310K562UCHL5
    chr63055345730553508+CDS,intron-Distal,intron-Proximal5.3912210.09256HepG2PRPF8
    chr63054631330546349+CDS,intron-Distal5.215077.49561HepG2BCLAF1
    chr63055017230550182+CDS,intron-Distal4.3317813.34503K562UCHL5
    chr63055145830551462+CDS,intron-Distal4.376013.56019HepG2GRWD1
    chr63055018130550285+CDS,intron-Distal,intron-Proximal4.017395.54422HepG2FXR2
    chr63054597730546021+CDS,intron-Proximal4.414059.61639HepG2PRPF8
    chr63054594230545980+CDS,intron-Proximal5.7372925.79132K562ZNF622
    chr63055084230550862+CDS,intron-Distal,intron-Proximal4.754075.70640HepG2BCLAF1
    chr63055337530553393+CDS,intron-Distal4.917548.86021HepG2GRWD1
    chr63055363830553680+CDS,intron-Distal,intron-Proximal4.229449.10472K562AQR
    chr63055373030553766+CDS,intron-Distal3.458384.04629HepG2G3BP1
    chr63055194130551982+CDS,intron-Distal,intron-Proximal3.229016.04408K562SF3B4
    chr63054824730548295+CDS,intron-Distal5.6399723.26250K562UCHL5
    chr63055141630551486+CDS,intron-Distal,intron-Proximal3.754886.47483K562PUM2
    chr63054818430548247+CDS,intron-Distal5.8598128.12248K562UCHL5
    chr63054518830545231+CDS,intron-Distal3.4633011.29985K562UCHL5
    chr63055016830550285+CDS,intron-Distal,intron-Proximal3.2340119.14307K562PUM1
    chr63055089330550934+CDS,intron-Distal3.818576.59473HepG2GRWD1
    chr63055087930550947+CDS,intron-Distal4.084629.37631HepG2BCLAF1
    chr63055216830552236+CDS,intron-Distal,intron-Proximal3.638679.76884HepG2BUD13
    chr63054594530545981+CDS,intron-Proximal3.055584.29582HepG2HLTF
    chr63055795230558028+CDS,intron-Proximal4.2315512.49465HepG2PRPF8
    chr63055335630553429+CDS,intron-Distal3.178249.17096K562YBX3
    chr63055084430550936+CDS,intron-Distal5.228645.38533HepG2ZNF800
    chr63055165130551666+CDS,intron-Distal3.375815.60389HepG2PPIG
    chr63054625630546302+CDS,intron-Distal5.428579.32793HepG2BCLAF1
    chr63055018330550255+CDS,intron-Distal3.973958.25074K562TRA2A
    chr63055019330550281+CDS,intron-Distal5.7451835.26909K562ZNF622
    chr63054824630548289+CDS,intron-Distal4.102545.65086HepG2BCLAF1
    chr63055202330552070+CDS,intron-Distal3.575598.81096HepG2PPIG
    chr63054770930547719+CDS,intron-Distal4.5486810.92483K562UCHL5
    chr63055399330554003+CDS,intron-Distal3.973727.10975K562UCHL5
    chr63055843130558473+CDS3.097845.00751HepG2BCLAF1
    chr63055027530550284+CDS,intron-Distal3.331033.06626K562GRWD1
    chr63055826030558323+CDS,intron-Proximal4.162935.60471HepG2U2AF2
    chr63054596730545979+CDS,intron-Proximal6.6734323.82270K562UCHL5
    chr63054771930547748+CDS,intron-Distal4.1506111.51254K562UCHL5
    chr63055220430552233+CDS,intron-Distal3.694724.41784HepG2GRWD1
    chr63054626930546322+CDS,intron-Distal4.261776.79646HepG2PRPF8
    chr63055794630557989+CDS3.697404.04629HepG2G3BP1
    chr63055084730550856+CDS,intron-Distal3.815964.97821K562BUD13
    chr63055342830553457+CDS,intron-Distal3.572514.45914HepG2PRPF8
    chr63055841630558471+CDS4.821505.85529K562RBM15
    chr63055333330553356+CDS,intron-Distal,intron-Proximal3.5147210.97175K562YBX3
    chr63055794830557976+CDS3.368975.73981HepG2GRWD1
    chr63055027530550284+CDS,intron-Distal5.3407418.80297K562UCHL5
    chr63055178030551846+intron-Distal4.497356.46853K562EFTUD2
    chr63055380330553826+intron-Distal,intron-Proximal5.050814.24111K562EFTUD2
    chr63055314830553183+intron-Distal,intron-Proximal5.2786614.48971HepG2PCBP2
    chr63055323330553304+intron-Distal,intron-Proximal5.3693923.97953HepG2PCBP2
    chr63055963930559696+intron-Distal3.272023.27901HepG2UPF1
    chr63056097630561073+intron-Distal4.028265.91795HepG2UPF1
    chr63055980330559877+intron-Distal3.297894.17280HepG2AKAP1
    chr63055318330553233+intron-Distal,intron-Proximal6.0877537.92990HepG2PCBP2
    chr63055242530552470+intron-Distal,intron-Proximal3.559684.06013K562PRPF8
    chr63055362930553638+intron-Distal,intron-Proximal5.908569.41643K562AQR
    chr63055234430552391+intron-Distal,intron-Proximal4.112419.03062K562AQR
    chr63055097030551002+intron-Distal,intron-Proximal3.874884.98250K562AQR
    chr63055363430553655+intron-Distal,intron-Proximal4.227075.32062K562EFTUD2
    chr63056059430560706+intron-Distal5.263558.00788K562UPF1
    chr63054636730546393+intron-Distal,intron-Proximal4.812115.17615K562AQR
    chr63055211030552134+intron-Distal,intron-Proximal4.414054.94356HepG2PRPF8
    chr63055128230551313+intron-Distal,intron-Proximal4.288113.12843K562PRPF8
    chr63055096730551003+intron-Distal,intron-Proximal5.056306.69228HepG2PRPF8
    chr63055346830553494+intron-Distal,intron-Proximal6.5273118.62356K562AQR
    chr63055328230553326+intron-Distal,intron-Proximal4.435279.23765K562SF3B4
    chr63056076930560869+intron-Distal3.730536.15198HepG2UPF1
    chr63055117130551319+intron-Distal,intron-Proximal3.741534.75223HepG2RBFOX2
    chr63055349430553501+intron-Distal,intron-Proximal6.4395218.07825K562AQR
    chr63055409930554122+intron-Distal,intron-Proximal4.3246410.95071HepG2PRPF8
    chr63055377730553840+intron-Distal,intron-Proximal4.008395.64238K562PRPF8
    chr63055981530559897+intron-Distal3.352493.05408HepG2UPF1
    chr63054635430546387+intron-Distal,intron-Proximal4.864996.01989HepG2PRPF8
    chr63055178730551809+intron-Distal4.463794.59919HepG2AQR
    chr63055320930553319+intron-Distal,intron-Proximal3.642109.39438K562EFTUD2
    chr63054597930546016+intron-Proximal4.292565.47926K562AQR
    chr63055788230557926+intron-Proximal4.5642012.17993HepG2SF3A3
    chr63053933730539380+intron-Proximal5.388896.22530K562AQR
    chr63053935330539374+intron-Proximal4.809485.93128HepG2PRPF8
    chr63053933730539353+intron-Proximal3.848785.61068HepG2PRPF8
    chr63055827230558303+intron-Proximal3.542983.54718K562PRPF8
    chr63055826230558287+intron-Proximal4.932626.04760K562AQR
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein ABCF1 and its RNA.



    Diffrential Expression
    • 5,438 differentially expressed genes after Knockdown/Knockout ABCF1 protein.  





    • 94 RBPs can affect the levels of ABCF1.  







    5,438 differentially expressed genes after Knockdown/Knockout ABCF1 protein :

    Only display 100 entries as example. Please click "View All" button to see all 5,438 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    TSPAN6ENSG00000000003.101932.303701537.646100.329502.337901.46960HepG2ABCF1
    CFHENSG00000000971.1116.521400.0000099999.999903.426502.38310HepG2ABCF1
    FUCA2ENSG00000001036.92287.339703144.49210-0.459203.641602.56560HepG2ABCF1
    SEMA3FENSG00000001617.7593.84800803.89550-0.436902.512601.61380HepG2ABCF1
    CYP51A1ENSG00000001630.112902.256305185.02160-0.837209.736908.13680HepG2ABCF1
    RAD52ENSG00000002016.12338.43310214.081700.660602.696001.76520HepG2ABCF1
    LASP1ENSG00000002834.1311436.347709222.744400.310302.457101.56910HepG2ABCF1
    KLHL13ENSG00000003096.951.1296013.775701.891903.701602.61820HepG2ABCF1
    DBNDD1ENSG00000003249.91072.443001413.13050-0.398002.970101.99140HepG2ABCF1
    TFPIENSG00000003436.105849.1661013750.31620-1.2332030.1152027.73620HepG2ABCF1
    SLC7A2ENSG00000003989.123215.576406526.38560-1.0212019.7436017.64820HepG2ABCF1
    POLDIP2ENSG00000004142.73109.267302235.809000.475704.157303.01990HepG2ABCF1
    PLXND1ENSG00000004399.81561.126903111.41140-0.995007.808306.33920HepG2ABCF1
    FKBP4ENSG00000004478.51213.956001972.76720-0.700507.701806.24100HepG2ABCF1
    UPF1ENSG00000005007.83272.887702380.949500.458904.211503.06790HepG2ABCF1
    SKAP2ENSG00000005020.8962.37390605.047400.669404.736403.53320HepG2ABCF1
    POLR2JENSG00000005075.111683.974601305.954800.366702.282401.42270HepG2ABCF1
    DHX33ENSG00000005100.81023.110201512.47070-0.563904.364003.20180HepG2ABCF1
    ACSM3ENSG00000005187.72302.071401125.614301.0321017.3807015.39790HepG2ABCF1
    CIAPIN1ENSG00000005194.101254.81570873.033800.523303.805002.70940HepG2ABCF1
    WDR54ENSG00000005448.1252.03690180.77610-1.796603.625002.55140HepG2ABCF1
    CROTENSG00000005469.7351.32150190.878100.880005.473904.19890HepG2ABCF1
    ABCB4ENSG00000005471.11439.16020826.99500-0.913108.666407.13680HepG2ABCF1
    RHBDD2ENSG00000005486.121028.97000746.924900.462102.662001.73710HepG2ABCF1
    IBTKENSG00000005700.101872.398802582.62380-0.463903.101102.10200HepG2ABCF1
    PDK2ENSG00000005882.71299.84160848.636600.615005.700204.40220HepG2ABCF1
    ITGA3ENSG00000005884.1356.66660107.06160-0.917902.533301.63080HepG2ABCF1
    ZFXENSG00000005889.112212.880601127.217700.9731015.0647013.17680HepG2ABCF1
    LAMP2ENSG00000005893.112591.788404028.12610-0.636207.341205.90590HepG2ABCF1
    ASB4ENSG00000005981.824.3009080.98370-1.736604.967203.74190HepG2ABCF1
    C19orf60ENSG00000006015.13203.75300111.767700.866203.173402.16240HepG2ABCF1
    CRLF1ENSG00000006016.61222.815805287.16830-2.1123011.8193010.09640HepG2ABCF1
    OSBPL7ENSG00000006025.7487.78070286.986700.765104.546203.36060HepG2ABCF1
    TMEM98ENSG00000006042.71367.521001753.74100-0.358902.264101.40700HepG2ABCF1
    CX3CL1ENSG00000006210.64689.678703313.875100.500905.117803.87830HepG2ABCF1
    MAP3K9ENSG00000006432.11535.63560735.82650-0.458103.198702.18350HepG2ABCF1
    JHDM1DENSG00000006459.6786.295802401.00330-1.6105036.6615034.10640HepG2ABCF1
    ELAC2ENSG00000006744.141411.03350996.869700.501204.362403.20070HepG2ABCF1
    ADIPOR2ENSG00000006831.91727.230203141.66580-0.8631012.0545010.32010HepG2ABCF1
    PROM1ENSG00000007062.7313.18550548.89650-0.809505.175203.92780HepG2ABCF1
    PAFAH1B1ENSG00000007168.81334.060301841.44390-0.465004.165003.02640HepG2ABCF1
    SLC13A2ENSG00000007216.1037.493400.0000099999.999908.037306.54790HepG2ABCF1
    PIGQENSG00000007541.10594.96870387.443100.618703.914302.80700HepG2ABCF1
    CDKL5ENSG00000008086.6298.30560176.791100.754603.555202.49410HepG2ABCF1
    NADKENSG00000008130.111837.177301339.203200.456003.798702.70430HepG2ABCF1
    ADAM22ENSG00000008277.10617.47690332.874400.891307.641706.18450HepG2ABCF1
    SPAG9ENSG00000008294.163084.061203982.99180-0.369003.450002.40150HepG2ABCF1
    PLEKHG6ENSG00000008323.11698.68930423.088800.723605.189603.94050HepG2ABCF1
    MGST1ENSG00000008394.81600.161502612.20520-0.707109.415807.83570HepG2ABCF1
    RHOBTB2ENSG00000008853.12654.41420446.769500.550603.413802.37260HepG2ABCF1
    SEC62ENSG00000008952.122359.146303388.36680-0.522305.157603.91210HepG2ABCF1
    CSDE1ENSG00000009307.1110086.4820013108.89330-0.378103.481502.42840HepG2ABCF1
    REV3LENSG00000009413.112276.339001642.123400.471102.708701.77580HepG2ABCF1
    MASP2ENSG00000009724.12573.40930391.298200.551203.178102.16620HepG2ABCF1
    MLXIPLENSG00000009950.1110082.777105401.180200.9004015.2585013.35940HepG2ABCF1
    CD9ENSG00000010278.7132.68450261.30290-0.977704.804303.59450HepG2ABCF1
    IFFO1ENSG00000010295.15657.36910485.715000.436502.532101.62990HepG2ABCF1
    GIPRENSG00000010310.49.4887053.85770-2.504902.217101.37000HepG2ABCF1
    SEMA3GENSG00000010319.2310.69210829.54330-1.416802.904301.93900HepG2ABCF1
    IDSENSG00000010404.13805.772101095.72820-0.443402.924101.95440HepG2ABCF1
    CD4ENSG00000010610.511.2156044.71540-1.995303.362602.32820HepG2ABCF1
    FYNENSG00000010810.13397.70050689.84480-0.794606.832105.43120HepG2ABCF1
    HIVEP2ENSG00000010818.4933.241401632.13100-0.806409.191607.63390HepG2ABCF1
    PTBP1ENSG00000011304.126033.218607364.76010-0.287702.427201.54550HepG2ABCF1
    ANLNENSG00000011426.62362.852103582.16060-0.600306.610905.22590HepG2ABCF1
    WIZENSG00000011451.131446.088501082.850500.417202.379501.50530HepG2ABCF1
    QPCTLENSG00000011478.7271.10090641.80390-1.2433011.670809.95890HepG2ABCF1
    MAP4K3ENSG00000011566.102147.011703586.10970-0.7401010.278208.64800HepG2ABCF1
    CD22ENSG00000012124.1074.7368029.253401.353102.438001.55400HepG2ABCF1
    MBTPS2ENSG00000012174.7602.73360882.52330-0.550103.758102.66870HepG2ABCF1
    NR1H4ENSG00000012504.92063.92570903.635401.1915019.1068017.03510HepG2ABCF1
    ELOVL5ENSG00000012660.92196.126003317.15260-0.595004.169403.02950HepG2ABCF1
    KDM5DENSG00000012817.112405.983701548.667200.635506.667905.28030HepG2ABCF1
    CALCOCO1ENSG00000012822.111930.071801507.749900.356202.381301.50650HepG2ABCF1
    CLDN11ENSG00000013297.682.01840164.17760-1.001204.094102.96400HepG2ABCF1
    SLC25A39ENSG00000013306.114572.799103409.760800.423303.618602.54650HepG2ABCF1
    MVPENSG00000013364.14596.78620833.14880-0.481403.135402.13120HepG2ABCF1
    PGM3ENSG00000013375.111612.117902665.05630-0.725209.338707.76600HepG2ABCF1
    ANGEL1ENSG00000013523.51151.00460869.048800.405302.658801.73510HepG2ABCF1
    GPRC5AENSG00000013588.528.7338098.30320-1.774506.218704.87050HepG2ABCF1
    TACC3ENSG00000013810.141454.025401900.54190-0.386402.613301.69780HepG2ABCF1
    DPEP1ENSG00000015413.5134.59060288.65730-1.100807.099205.68380HepG2ABCF1
    NPC1L1ENSG00000015520.101054.839401406.04840-0.414602.245401.39270HepG2ABCF1
    XYLT2ENSG00000015532.5584.074901049.48780-0.845504.681703.48360HepG2ABCF1
    CHDHENSG00000016391.64883.833703188.280100.615107.346605.90980HepG2ABCF1
    GLT8D1ENSG00000016864.122013.876401422.786800.501203.752902.66390HepG2ABCF1
    SLC38A5ENSG00000017483.10634.348401180.61860-0.896209.308607.73860HepG2ABCF1
    WWTR1ENSG00000018408.101743.243003262.04070-0.9040014.9191013.03660HepG2ABCF1
    AGPSENSG00000018510.81947.689703025.78780-0.635507.494306.04890HepG2ABCF1
    PHLDB1ENSG00000019144.12666.96710871.31620-0.385602.407001.52780HepG2ABCF1
    CYP24A1ENSG00000019186.5119.76070242.96660-1.020602.967801.98980HepG2ABCF1
    SYT13ENSG00000019505.315.3642040.43470-1.396002.236101.38580HepG2ABCF1
    SNAI2ENSG00000019549.439.594204.591903.108004.466003.28980HepG2ABCF1
    RUNX3ENSG00000020633.143.8632021.11760-2.450602.391301.51510HepG2ABCF1
    PLEKHB1ENSG00000021300.9924.339202446.56410-1.4043028.4327026.12060HepG2ABCF1
    CYP3A43ENSG00000021461.12142.9398030.457102.2305010.420208.78310HepG2ABCF1
    CPS1ENSG00000021826.102256.604701573.717300.519904.900303.68120HepG2ABCF1
    C8BENSG00000021852.8428.56750233.030400.878905.481004.20540HepG2ABCF1
    RB1CC1ENSG00000023287.81815.823802459.85170-0.437903.645502.56860HepG2ABCF1
    ERP44ENSG00000023318.71406.584901785.03330-0.343802.244101.39170HepG2ABCF1
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    94 RBPs can affect the gene expression of ABCF1 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    ABCF1ENSG00000204574.82301.812303545.75230-0.623306.579105.19840HepG2ABCF1
    ABCF1ENSG00000204574.83315.462902636.799500.330306.527305.67420HepG2ACO1
    ABCF1ENSG00000204574.84851.609502660.307900.8668011.8364010.80990HepG2AKAP1
    ABCF1ENSG00000204574.83376.321403880.73020-0.200902.571801.90670HepG2AUH
    ABCF1ENSG00000204574.81765.455802215.79200-0.327802.539101.67630HepG2BCLAF1
    ABCF1ENSG00000204574.85205.738304192.399900.312203.000602.38030HepG2BOP1
    ABCF1ENSG00000204574.82161.125901620.155800.415602.062501.40770HepG2CNOT7
    ABCF1ENSG00000204574.83051.574203848.84520-0.334902.948402.24220HepG2CPSF6
    ABCF1ENSG00000204574.82081.222603182.64540-0.6128012.5544011.37690HepG2CELF1
    ABCF1ENSG00000204574.82880.361103421.61490-0.248403.521302.70210HepG2DAZAP1
    ABCF1ENSG00000204574.83143.404404370.64850-0.475502.370701.46570HepG2DDX59
    ABCF1ENSG00000204574.82078.210902522.72450-0.279603.909603.13130HepG2DKC1
    ABCF1ENSG00000204574.81554.847501921.64820-0.305603.573702.78080HepG2DNAJC21
    ABCF1ENSG00000204574.81549.016301904.70960-0.298204.749403.93250HepG2DNAJC2
    ABCF1ENSG00000204574.83022.084402325.198600.378102.648602.02240HepG2EIF4A3
    ABCF1ENSG00000204574.83010.968402264.369900.411002.487201.83390HepG2EIF4B
    ABCF1ENSG00000204574.82185.070403233.98280-0.565607.010905.73870HepG2EIF4G2
    ABCF1ENSG00000204574.83192.470202346.761500.443904.088503.25950HepG2FXR1
    ABCF1ENSG00000204574.81734.663202157.96640-0.315002.676501.99360HepG2HNRNPC
    ABCF1ENSG00000204574.82840.931003489.70670-0.296704.907103.98590HepG2HNRNPF
    ABCF1ENSG00000204574.83141.879102204.884800.510806.032105.03010HepG2HNRNPK
    ABCF1ENSG00000204574.82872.024104163.64370-0.535806.397605.48440HepG2HNRNPLL
    ABCF1ENSG00000204574.82602.623702143.698500.279804.167303.43540HepG2HNRNPU
    ABCF1ENSG00000204574.82821.844303436.35690-0.284203.081902.32020HepG2IGF2BP1
    ABCF1ENSG00000204574.82707.893802212.308300.291502.036001.44780HepG2IGF2BP2
    ABCF1ENSG00000204574.83269.910602347.584000.478004.539703.70450HepG2MAGOH
    ABCF1ENSG00000204574.84698.827402360.603900.9930015.8303014.41430HepG2MATR3
    ABCF1ENSG00000204574.82842.527304246.41340-0.579104.298903.07820HepG2MTPAP
    ABCF1ENSG00000204574.83159.706702416.112300.387003.074602.40880HepG2NCBP2
    ABCF1ENSG00000204574.82977.184602303.663600.369903.172702.53070HepG2PCBP1
    ABCF1ENSG00000204574.81387.853302977.31770-1.1012043.8936041.60530HepG2PRPF4
    ABCF1ENSG00000204574.84174.862103438.459600.279906.780005.93660HepG2PUM1
    ABCF1ENSG00000204574.82711.983003435.84520-0.341303.979903.17970HepG2PUM2
    ABCF1ENSG00000204574.82150.881602685.76370-0.320405.718204.89090HepG2PUS1
    ABCF1ENSG00000204574.83163.249002608.773200.277902.861802.31330HepG2NELFE
    ABCF1ENSG00000204574.83037.758503759.38840-0.307502.981202.27510HepG2RPLP0
    ABCF1ENSG00000204574.82174.963601608.271400.435405.008604.20950HepG2RPS19
    ABCF1ENSG00000204574.81629.530702136.25540-0.390603.771702.84140HepG2RPS2
    ABCF1ENSG00000204574.81676.931101909.05240-0.187002.047001.47970HepG2SAFB2
    ABCF1ENSG00000204574.82084.231901614.008500.368802.984202.00570HepG2SERBP1
    ABCF1ENSG00000204574.82474.688703559.70980-0.524504.047703.22500HepG2SF3A3
    ABCF1ENSG00000204574.82801.629104121.17470-0.556807.743406.61560HepG2SF3B1
    ABCF1ENSG00000204574.82881.880202440.326100.239802.363401.81140HepG2SF3B4
    ABCF1ENSG00000204574.82438.726703105.99310-0.348904.869803.97940HepG2SLBP
    ABCF1ENSG00000204574.82759.120402226.267700.309506.497805.57830HepG2SMN1
    ABCF1ENSG00000204574.83297.109204206.21960-0.351308.119207.38560HepG2SRFBP1
    ABCF1ENSG00000204574.83942.589002547.315200.6301016.3605015.41510HepG2SRSF1
    ABCF1ENSG00000204574.83560.085203198.195000.154601.932801.39770HepG2SRSF5
    ABCF1ENSG00000204574.82712.713303428.54910-0.337906.217005.24020HepG2SRSF7
    ABCF1ENSG00000204574.81761.279302392.12470-0.441702.665301.44840HepG2STAU1
    ABCF1ENSG00000204574.84435.275203637.059000.286206.638705.74860HepG2SUCLG1
    ABCF1ENSG00000204574.81989.699002496.12050-0.327102.674402.00780HepG2SUPV3L1
    ABCF1ENSG00000204574.82278.244204058.30960-0.8330015.8175014.32400HepG2TARDBP
    ABCF1ENSG00000204574.81764.379202082.96600-0.239502.092701.64560HepG2TIAL1
    ABCF1ENSG00000204574.84997.883903063.252900.7062011.8253010.49920HepG2U2AF1
    ABCF1ENSG00000204574.82090.270702938.32840-0.491309.769608.63690HepG2ZC3H8
    ABCF1ENSG00000204574.81668.578403472.00610-1.0572065.2494063.51500HepG2ZNF622
    ABCF1ENSG00000204574.83178.175508762.45620-1.4631022.2312019.22200K562ABCF1
    ABCF1ENSG00000204574.82790.273803552.84850-0.348606.550505.73160K562AGGF1
    ABCF1ENSG00000204574.89340.822807007.528800.414502.659001.44420K562APOBEC3C
    ABCF1ENSG00000204574.83858.245405105.90370-0.404204.143803.07180K562BOP1
    ABCF1ENSG00000204574.83986.082105429.00790-0.445706.876505.63170K562CPSF6
    ABCF1ENSG00000204574.86103.949909762.40880-0.6775010.605108.76500K562CELF1
    ABCF1ENSG00000204574.88947.689106801.091500.395606.775105.82080K562DDX47
    ABCF1ENSG00000204574.84570.754303978.273800.200202.231001.45590K562DKC1
    ABCF1ENSG00000204574.85162.568206639.96270-0.363106.833605.77730K562EIF2S2
    ABCF1ENSG00000204574.84037.020102686.985900.587203.770902.57680K562EIF3A
    ABCF1ENSG00000204574.84187.884502538.054000.7224016.3001014.29930K562EIF3G
    ABCF1ENSG00000204574.83707.669802490.734000.573808.297006.87640K562EIF4A3
    ABCF1ENSG00000204574.83830.467305523.95010-0.528204.783403.65660K562FMR1
    ABCF1ENSG00000204574.83525.641004682.07350-0.409303.927902.82290K562FTO
    ABCF1ENSG00000204574.85513.400402590.248001.0898050.7404048.35200K562FXR1
    ABCF1ENSG00000204574.81409.492501999.66950-0.504603.620402.78630K562G3BP2
    ABCF1ENSG00000204574.82552.241403649.90130-0.516105.357003.36070K562GEMIN5
    ABCF1ENSG00000204574.83989.749005183.34030-0.377604.340003.35180K562GPKOW
    ABCF1ENSG00000204574.86592.522308848.54290-0.424606.194905.05900K562GRSF1
    ABCF1ENSG00000204574.83623.864802770.637100.387203.376501.99520K562HNRNPK
    ABCF1ENSG00000204574.86717.850308539.43180-0.346102.928602.11130K562HSPD1
    ABCF1ENSG00000204574.82116.438902759.67840-0.382903.299501.65890K562ILF3
    ABCF1ENSG00000204574.82973.770504425.99480-0.573704.878903.59720K562KRR1
    ABCF1ENSG00000204574.84661.196602915.733900.6767010.881509.14590K562MAGOH
    ABCF1ENSG00000204574.83924.269502909.671300.431505.800704.39270K562MATR3
    ABCF1ENSG00000204574.84109.528005059.52960-0.300002.961702.05330K562METAP2
    ABCF1ENSG00000204574.84176.774405546.59390-0.4092010.546409.07340K562MTPAP
    ABCF1ENSG00000204574.85292.115406162.93760-0.219805.695904.68040K562NSUN2
    ABCF1ENSG00000204574.82709.179204402.53410-0.700502.296901.41190K562PABPN1
    ABCF1ENSG00000204574.83923.705202594.104200.596909.453207.61220K562PCBP2
    ABCF1ENSG00000204574.84228.408706231.76970-0.559506.498505.22140K562PCBP3
    ABCF1ENSG00000204574.83960.904805129.84210-0.373103.198201.51250K562PKM
    ABCF1ENSG00000204574.83669.618004779.94520-0.381405.271304.16640K562POLR2G
    ABCF1ENSG00000204574.85832.406107149.22150-0.293702.511101.73410K562PPIG
    ABCF1ENSG00000204574.85845.579803542.696900.7224012.3837010.78860K562PRPF8
    ABCF1ENSG00000204574.84621.610602832.890500.7060015.1195013.63350K562PTBP1
    ABCF1ENSG00000204574.810411.025608664.786900.264802.167701.44720K562PUF60
    ABCF1ENSG00000204574.87193.613709030.28370-0.328102.801401.83690K562PUM2
    ABCF1ENSG00000204574.83415.934302715.874200.330803.052302.16370K562RBM22
    ABCF1ENSG00000204574.86461.241904259.155500.6011011.057908.99480K562SAFB
    ABCF1ENSG00000204574.82928.358306080.98830-1.0542049.1924046.44820K562SF3A3
    ABCF1ENSG00000204574.83499.923004929.63600-0.494203.523602.42230K562SF3B1
    ABCF1ENSG00000204574.83000.014002079.107000.528908.882207.30160K562SF3B4
    ABCF1ENSG00000204574.85579.027006230.08050-0.159202.577201.66890K562SRPK2
    ABCF1ENSG00000204574.84053.967202777.286000.545609.316008.02850K562SRSF1
    ABCF1ENSG00000204574.81951.272802618.12570-0.424102.752401.48060K562SSB
    ABCF1ENSG00000204574.85233.100707558.85930-0.530505.497803.64960K562STAU1
    ABCF1ENSG00000204574.82872.711605531.74300-0.945303.651401.92560K562SUPT6H
    ABCF1ENSG00000204574.87546.413104794.457500.6543015.6268013.70560K562SYNCRIP
    ABCF1ENSG00000204574.85908.086907473.62390-0.339102.935401.62630K562TROVE2
    ABCF1ENSG00000204574.82790.888203630.49560-0.379403.325602.20240K562UCHL5
    ABCF1ENSG00000204574.85307.040606534.67960-0.300206.560505.50880K562UPF1
    ABCF1ENSG00000204574.83895.932205591.54140-0.521307.440905.96460K562WDR3
    ABCF1ENSG00000204574.85181.742403224.873600.684103.743601.83070K562XRCC6
    ABCF1ENSG00000204574.85078.808607312.94830-0.526004.124503.03510K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    125 alternative splicing events after Knockdown/Knockout ABCF1 protein :

    Only display 100 entries as example. Please click "View All" button to see all 125 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SERPS24ENSG00000138326.14chr10+7979996179799983797969517979706279800372798004550.197000.000000.00000includedK562ABCF1
    SELRRFIP2ENSG00000093167.13chr3-3713295737133029371251263712529737136282371363990.283000.000000.00013includedK562ABCF1
    SESNRNP70ENSG00000104852.10chr19+4960537049606844496046464960472849607890496079920.090000.000000.00000includedK562ABCF1
    SEAZI2ENSG00000163512.9chr3-2837942728379527283782272837837628379983283801060.076000.000060.04141includedK562ABCF1
    SEUBE2D2ENSG00000131508.11chr5+1389418281389419921389407501389414001389799561389800200.053000.000010.00965includedK562ABCF1
    SEMARK3ENSG00000075413.13chr14+1039664921039665371039581131039583711039692181039694080.081000.000140.07395includedK562ABCF1
    SEMYL6ENSG00000092841.14chr12+5655440956554454565540555655410456555170565553710.102000.000030.02431includedK562ABCF1
    SECNOT6ENSG00000113300.7chr5+1799982291799984321799961091799963401800009871800054050.092000.000170.08233includedK562ABCF1
    SEDIAPH1ENSG00000131504.11chr5-1409677901409678171409666081409667641409983641409986220.209000.000010.00891includedK562ABCF1
    SEZNF207ENSG00000010244.12chr17+3069368330693776306923483069250630694790306949620.141000.000000.00003includedK562ABCF1
    SENQO2ENSG00000124588.15chr6+3004728300488530002223000319300670130067930.057000.000210.09662includedK562ABCF1
    SENQO2ENSG00000124588.15chr6+3015763301587730127773012908301711730172190.199000.000040.02973includedK562ABCF1
    SEUAP1ENSG00000117143.9chr1+1625625211625625721625601121625603011625675811625676480.088000.000000.00000includedK562ABCF1
    SESREK1ENSG00000153914.11chr5+6545189265454760654492906544942465455046654551620.099000.000160.08097includedK562ABCF1
    SENDUFV3ENSG00000160194.13chr21+4432329144324386443170364431715744328973443292150.112000.000120.06447includedK562ABCF1
    SEARF4ENSG00000168374.6chr3-5758280057582950575701105757019157583058575832350.099000.000210.09662includedK562ABCF1
    SEANKHD1ENSG00000131503.16chr5+1399272271399274251399217561399218661399284901399286610.092000.000000.00034includedK562ABCF1
    SEZNF770ENSG00000198146.4chr15-3527975735279874352705413527569135280316352804880.097000.000050.03561includedK562ABCF1
    SEDNAJB6ENSG00000105993.10chr7+1572024881572026951571782341571783051572087091572101330.135000.000110.06386includedK562ABCF1
    SEMRRFENSG00000148187.13chr9+1250483171250484451250474471250475661250540271250540770.186000.000000.00465includedK562ABCF1
    SESMIM15ENSG00000188725.3chr5-6045804360458186604569146045705460458272604582950.089000.000000.00091includedK562ABCF1
    SELTBP4ENSG00000090006.13chr19+4112885441128926411283054112857241129508411296370.164000.000170.08232includedK562ABCF1
    SEGAKENSG00000178950.12chr4-8623268624738611398612208644988646920.149000.000070.04346includedK562ABCF1
    SEEPHB6ENSG00000106123.7chr7+1425597741425598911425588091425589441425605131425605910.354000.000050.03394includedK562ABCF1
    SEAXIN1ENSG00000103126.10chr16-3411893412973394393396073434873437180.152000.000120.06398includedK562ABCF1
    SEPVT1ENSG00000249859.3chr8+1290824051290825181290606931290608551291087631291089000.090000.000020.01617includedK562ABCF1
    SEC22orf34ENSG00000188511.8chr22-4981025049810384498081754980968449810463498105770.330000.000000.00031includedK562ABCF1
    SENT5DC3ENSG00000111696.7chr12-1041826151041826971041812181041813051041869411041870430.081000.000110.06272includedK562ABCF1
    SEBPTFENSG00000171634.12chr17+6587167165871860658709326587113665887959658881500.251000.000110.06386includedK562ABCF1
    SEHNRNPDLENSG00000152795.13chr4-8334671583346820833457818334603683347189833473030.069000.000010.01270includedK562ABCF1
    SEOXSR1ENSG00000172939.4chr3+3823477238234909382322213823233038240212382403540.070000.000000.00265includedK562ABCF1
    SESNHG1ENSG00000255717.2chr11-6262235962622410626219906262202362622604626227080.103000.000100.05692includedK562ABCF1
    SEHMGA1ENSG00000137309.15chr6+3420498034205087342046553420474034208513342086590.080000.000000.00000includedK562ABCF1
    SEFANCAENSG00000187741.10chr16-8980920789809346898072118980727489811366898114790.153000.000000.00388includedK562ABCF1
    SEABI1ENSG00000136754.12chr10-2706000327060018270591732705927427065993270661700.121000.000150.07490includedK562ABCF1
    SEABCA7ENSG00000064687.8chr19+1057913105805810573121057428105814410582680.084000.000010.00730includedK562ABCF1
    SEPRKAR2AENSG00000114302.11chr3-4878960848789750487890174878915148793811487938770.199000.000000.00388includedK562ABCF1
    SESETD8ENSG00000183955.8chr12+1238739791238741011238683191238687551238751761238753330.220000.000000.00019includedK562ABCF1
    SEAUP1ENSG00000115307.12chr2-7475652374756626747558777475640974756706747570660.123000.000160.08144includedK562ABCF1
    SERPL17ENSG00000265681.2chr18-4701810547018203470178864701795447018644470187690.159000.000000.00101includedK562ABCF1
    SESRRM1ENSG00000133226.12chr1+2497356924973699249731572497328024975349249755200.205000.000000.00000includedK562ABCF1
    SESCLT1ENSG00000151466.7chr4-1299977491299978121299651471299652061300034601300035280.075000.000040.02721includedK562ABCF1
    SEPPFIA1ENSG00000131626.11chr11+7019602870196145701942947019452670200406702005580.138000.000010.00912includedK562ABCF1
    SEZNF711ENSG00000147180.12chrX+8450193584502189845009088450102884502552845026570.695000.000020.01944includedK562ABCF1
    SEPSMG1ENSG00000183527.7chr21-4055184940551912405503744055057340552210405523320.115000.000000.00067includedK562ABCF1
    SEIFT46ENSG00000118096.3chr11-1184284521184286051184276201184277601184304991184305790.161000.000020.01617includedK562ABCF1
    SEATAD3AENSG00000197785.9chr1+1451016145123814475301447853145139114514680.068000.000060.03954includedK562ABCF1
    SEMAXENSG00000125952.14chr14-6554406165544146655431796554338165544630655447540.099000.000000.00000includedK562ABCF1
    SEEEF1DENSG00000104529.13chr8-1446728141446729081446718131446722511446795171446795850.270000.000040.03280includedK562ABCF1
    SETIAL1ENSG00000151923.13chr10-1213399821213403581213394461213395221213414331213415210.296000.000000.00050includedK562ABCF1
    SERSRC2ENSG00000111011.13chr12-1230050501230051281230033851230035761230059311230059750.052000.000080.04898includedK562ABCF1
    SESTAU1ENSG00000124214.15chr20-477956584779578147790731477908064780465247804904-0.148000.000030.02257excludedK562ABCF1
    SEXYLBENSG00000093217.5chr3+384138273841403438411546384116653841414538414227-0.114000.000220.09768excludedK562ABCF1
    SEEIF4HENSG00000106682.10chr7+736045767360463673604151736042487360907073609208-0.058000.000030.02257excludedK562ABCF1
    SECHMP3ENSG00000115561.10chr2-867563408675652086737480867376028679042686790602-0.137000.000010.01093excludedK562ABCF1
    SESEC31AENSG00000138674.12chr4-837632928376363483750152837502118376553883765662-0.072000.000000.00186excludedK562ABCF1
    SEENDOGENSG00000167136.6chr9+131583966131584093131583017131583127131584606131584956-0.095000.000180.08606excludedK562ABCF1
    SEMORF4L2ENSG00000123562.12chrX-102941558102941675102940098102940188102942916102942955-0.095000.000050.03565excludedK562ABCF1
    SEHMBOX1ENSG00000147421.13chr8+289036862890393328902877289029602890487428904970-0.113000.000070.04486excludedK562ABCF1
    SESZRD1ENSG00000055070.12chr1+167178691671791916693577166938031671972516719977-0.125000.000220.09770excludedK562ABCF1
    SECARS2ENSG00000134905.12chr13-111296411111296529111294661111294868111296731111296830-0.254000.000160.08097excludedK562ABCF1
    SEHNRNPCENSG00000092199.13chr14-217314692173149521702111217023882173745621737582-0.055000.000210.09662excludedK562ABCF1
    SEHUWE1ENSG00000086758.11chrX-535897915358989053589071535892055359070653590782-0.068000.000020.01980excludedK562ABCF1
    SER3HDM4ENSG00000198858.5chr19-902241902434901975902130913086913204-0.204000.000020.01538excludedK562ABCF1
    SEKIF13AENSG00000137177.14chr6-177713441777144917764385177651771777213817772290-0.381000.000000.00012excludedK562ABCF1
    SERP11-1L9.1ENSG00000226434.1chrX+133977161339791713395306133954541341338013413511-0.491000.000110.06398excludedK562ABCF1
    SECSE1LENSG00000124207.12chr20+477127124771276447711268477115004771288547713123-0.061000.000020.01617excludedK562ABCF1
    SEZNF195ENSG00000005801.12chr11-339884633990323392806339293334002673400330-0.099000.000140.07217excludedK562ABCF1
    SEADD3ENSG00000148700.9chr10+111892062111892158111890120111890244111893083111893969-0.276000.000010.01207excludedK562ABCF1
    SEECT2ENSG00000114346.9chr3+172473272172473365172473084172473164172474772172474955-0.100000.000040.03280excludedK562ABCF1
    SEEIF4A2ENSG00000156976.10chr3+186506098186506209186505591186505671186506913186507080-0.076000.000020.01538excludedK562ABCF1
    SEPRKDCENSG00000253729.3chr8-486947224869481548691564486916544869493848695159-0.103000.000000.00000excludedK562ABCF1
    SEMIR4435-1HGENSG00000172965.10chr2-112005724112005818111954496111954771112101637112101814-0.317000.000000.00098excludedK562ABCF1
    SECNOT1ENSG00000125107.12chr16-586571855865731358633166586334155866363158663789-0.052000.000010.01126excludedK562ABCF1
    SECIB1ENSG00000185043.6chr15-907749159077502090774588907747399077690090776935-0.390000.000060.04119excludedK562ABCF1
    SECAPN7ENSG00000131375.5chr3+152870321528717815283684152837601528823815288301-0.120000.000020.01944excludedK562ABCF1
    SESRPK2ENSG00000135250.12chr7-104909252104909316104844169104844232105029094105029149-0.137000.000100.05692excludedK562ABCF1
    SETRMUENSG00000100416.8chr22+467391584673926546733675467338414674231846742441-0.215000.000070.04204excludedK562ABCF1
    SESMCHD1ENSG00000101596.10chr18+272251627226612718312271843227248962724993-0.158000.000030.02257excludedK562ABCF1
    SEPTPRCENSG00000081237.14chr1+198668692198668833198661475198661502198672426198672501-0.240000.000000.00002excludedK562ABCF1
    SEMARCH7ENSG00000136536.10chr2+160621136160621185160619390160619504160623794160623880-0.103000.000000.00091excludedK562ABCF1
    SEHSD17B4ENSG00000133835.10chr5+118807330118807395118792009118792063118809602118809710-0.061000.000120.06447excludedK562ABCF1
    SEDCTDENSG00000129187.10chr4-183837571183837692183836613183836728183838463183838596-0.255000.000180.08606excludedK562ABCF1
    SEPTCD3ENSG00000132300.14chr2+863466668634673786346073863461678634860186348714-0.070000.000050.03555excludedK562ABCF1
    A3SSSNRPD1ENSG00000167088.6chr18+1920383119203900192038351920390019202685192027620.096000.000000.01183longerK562ABCF1
    A3SSNACAENSG00000196531.6chr12-5711823557118356571182355711830757118745571188200.196000.000000.00122longerK562ABCF1
    A3SSGLYR1ENSG00000140632.12chr16-4871380487158048713804871454487287548729320.092000.000030.04941longerK562ABCF1
    A3SSZNF711ENSG00000147180.12chrX+8450193584502657845025528450265784500908845010280.724000.000010.03357longerK562ABCF1
    A3SSPFDN6ENSG00000204220.5chr6+332575463325769733257618332576973325707833257397-0.232000.000000.00000shorterK562ABCF1
    A3SSC17orf76-AS1ENSG00000175061.13chr17+163428411634301716342894163430171634264016342728-0.129000.000020.03357shorterK562ABCF1
    A3SSGAS5ENSG00000234741.3chr1-173835665173835817173835665173835705173835898173835934-0.064000.000000.00002shorterK562ABCF1
    A3SSACTR5ENSG00000101442.8chr20+373948803739502037394899373950203739404437394161-0.295000.000050.07021shorterK562ABCF1
    RIDDX47ENSG00000213782.3chr12+1297613612976950129761361297625312976803129769500.062000.000010.00599includedK562ABCF1
    RISTAT2ENSG00000170581.9chr12-5674856156749135567485615674864756749059567491350.105000.000020.01253includedK562ABCF1
    RIDMTNENSG00000158856.13chr8+2192652621927029219265262192657121926929219270290.139000.000020.01101includedK562ABCF1
    RIAKT2ENSG00000105221.12chr19-4074216340743998407421634074229240743875407439980.089000.000070.02495includedK562ABCF1
    RIVPS28ENSG00000160948.9chr8-1456503281456511551456503281456503831456510651456511550.148000.000290.08177includedK562ABCF1
    RIDDX39AENSG00000123136.10chr19-1452011414520457145201141452025914520347145204570.080000.000050.02014includedK562ABCF1
    RISRRM1ENSG00000133226.12chr1+2497315724975520249731572497328024975349249755200.157000.000000.00023includedK562ABCF1
    RIPI4KAENSG00000241973.6chr22-2106698021067678210669802106708521067568210676780.214000.000010.00455includedK562ABCF1





    7 RBPs can affect the splicing of ABCF1 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEABCF1ENSG00000204574.8chr6+305451573054523230539209305393373054559430545690-0.052000.000150.00400excludedHepG2U2AF1
    SEABCF1ENSG00000204574.8chr6+305451853054523230539209305393373054559430545690-0.063000.000000.00000excludedHepG2U2AF2
    SEABCF1ENSG00000204574.8chr6+305451853054523230539209305393373054559430545690-0.063000.000410.00956excludedK562U2AF2
    A3SSABCF1ENSG00000204574.8chr6+3054584930545979305458523054597930545594305456900.199000.000190.03103longerHepG2PCBP1
    A5SSABCF1ENSG00000204574.8chr6+3055441730554584305544173055448830557464305574970.054000.000000.00000longerK562AQR
    A5SSABCF1ENSG00000204574.8chr6+305512853055148530551285305514713055158130551667-0.070000.000010.00262shorterHepG2SF3A3
    MXEABCF1ENSG00000204574.8chr6+30548182305482963055017030550284305477073054778230550842305509650.051000.000000.000041includedHepG2FTO
    MXEABCF1ENSG00000204574.8chr6+30548182305482963055017030550284305477073054778230550842305509650.113000.003880.071051includedHepG2DDX55
    MXEABCF1ENSG00000204574.8chr6+3054770730547782305481823054829630546246305463543055017030550284-0.080000.007560.043122includedHepG2U2AF2

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein ABCF1 and its RNA.