PGM3

General Information

Gene Name       : PGM3
Gene ID             : ENSG00000013375.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PGM3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PGM3ENSG00000013375.1512.478.8310.65ENCSR000AEF
HepG2PGM3ENSG00000013375.1551.9354.1153.02ENCSR985KAT
K562PGM3ENSG00000013375.1520.5420.4920.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PGM3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PGM3 RNA is bound by 20 proteins.  







eCLIP assay for PGM3 is not avaliable on ENCORE database.





20 proteins are bound to PGM3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr68387858983878651-3'-UTR,intron-Distal3.443196.74819K562YBX3
chr68387889583878937-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.066963.37074K562TIA1
chr68387691083877007-3'-UTR,intron-Distal3.153869.62434K562UPF1
chr68387512883875193-3'-UTR,intron-Distal3.588523.23847HepG2CSTF2
chr68389673283896806-3'-UTR,CDS,intron-Distal,intron-Proximal6.1455445.16100K562U2AF2
chr68389675583896813-3'-UTR,CDS,intron-Distal,intron-Proximal5.5798150.74415HepG2U2AF2
chr68389674583896807-3'-UTR,CDS,intron-Distal,intron-Proximal5.6167515.28596K562U2AF1
chr68387700783877071-3'-UTR,intron-Distal3.078939.73684K562UPF1
chr68387864383878754-3'-UTR,intron-Distal,intron-Proximal5.005855.29045K562IGF2BP1
chr68389672483896796-3'-UTR,CDS,intron-Distal,intron-Proximal3.543026.41974HepG2PPIG
chr68387767483877775-3'-UTR,intron-Distal3.762133.14313K562SAFB
chr68387707183877140-3'-UTR,intron-Distal3.057449.77472K562UPF1
chr68389836083898421-5'-UTR,CDS,intron-Distal,intron-Proximal3.630115.97823HepG2BCLAF1
chr68388171883881779-CDS,intron-Distal,intron-Proximal3.138716.59678HepG2BCLAF1
chr68388417583884256-CDS,intron-Distal,intron-Proximal4.0837415.34537K562SF3B4
chr68389160283891681-CDS,intron-Distal,intron-Proximal3.853207.42414K562U2AF2
chr68388003383880159-CDS,intron-Distal3.626263.05512HepG2PRPF4
chr68388414083884177-CDS,intron-Distal,intron-Proximal5.054106.58593HepG2BCLAF1
chr68389162683891678-CDS,intron-Distal,intron-Proximal4.230564.52791K562U2AF1
chr68388574983885791-CDS,intron-Distal,intron-Proximal3.527133.13705K562BUD13
chr68388843183888476-CDS,intron-Distal,intron-Proximal3.134604.79538HepG2BCLAF1
chr68388002283880094-CDS,intron-Distal,intron-Proximal3.015676.05740HepG2GRWD1
chr68389160783891677-CDS,intron-Distal,intron-Proximal4.2606212.08856HepG2U2AF2
chr68389159083891656-CDS,intron-Distal,intron-Proximal3.2672410.70004HepG2BCLAF1
chr68389145483891587-CDS,intron-Distal,intron-Proximal4.750864.83675HepG2G3BP1
chr68388614783886214-intron-Distal3.411833.12080HepG2XPO5
chr68389913783899177-intron-Distal3.164345.58362HepG2U2AF2
chr68389681383896858-intron-Distal,intron-Proximal3.059365.79202HepG2U2AF2
chr68389238383892464-intron-Distal4.944055.51162HepG2U2AF2
chr68388584583885912-intron-Distal,intron-Proximal3.545715.04794HepG2KHSRP
chr68389906983899118-intron-Distal3.277349.93565HepG2U2AF2
chr68388894083889034-intron-Distal3.267454.23034HepG2HNRNPC
chr68389966983899736-intron-Distal4.319245.13071HepG2HNRNPK
chr68388546383885513-intron-Distal3.426563.38150K562KHSRP
chr68388582483885894-intron-Distal,intron-Proximal3.227577.34034HepG2U2AF2
chr68389043183890667-intron-Distal3.003574.68136K562HNRNPL
chr68389270183892823-intron-Distal,intron-Proximal3.222683.55116K562KHSRP
chr68389922683899355-intron-Distal3.087899.22986HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PGM3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PGM3 is not available on ENCORE database.

  • 126 RBPs can affect the levels of PGM3.  








The Knockdown/knockout RNA-Seq assay for PGM3 is not available on ENCORE database.





126 RBPs can affect the gene expression of PGM3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PGM3ENSG00000013375.111612.117902665.05630-0.725209.338707.76600HepG2ABCF1
PGM3ENSG00000013375.112162.208402779.06270-0.362107.218206.33170HepG2ACO1
PGM3ENSG00000013375.111317.889702087.69110-0.663708.481806.85350HepG2ADAR
PGM3ENSG00000013375.111809.009103972.31790-1.1348012.7753011.71970HepG2AKAP1
PGM3ENSG00000013375.111806.818402331.77520-0.368002.482101.49410HepG2AKAP8
PGM3ENSG00000013375.112066.540202792.01650-0.434108.646707.38650HepG2AKAP8L
PGM3ENSG00000013375.112461.501303286.88420-0.417202.834802.04200HepG2ASCC1
PGM3ENSG00000013375.111271.169301884.62760-0.568106.964606.06390HepG2BOP1
PGM3ENSG00000013375.111625.306003054.87180-0.910405.138803.79130HepG2CCAR1
PGM3ENSG00000013375.112507.942103122.72600-0.316302.078901.40250HepG2CIRBP
PGM3ENSG00000013375.112014.894002778.33490-0.4635012.3758011.17290HepG2CKAP4
PGM3ENSG00000013375.111339.726902287.37910-0.771805.913904.79330HepG2CNOT7
PGM3ENSG00000013375.11971.672001423.89910-0.551305.513004.07100HepG2CSTF2
PGM3ENSG00000013375.111863.630402570.17790-0.4638011.403609.94300HepG2DDX19B
PGM3ENSG00000013375.111465.702702143.91270-0.5487010.066008.08340HepG2DDX1
PGM3ENSG00000013375.111862.173502215.60540-0.250701.928101.34930HepG2DDX21
PGM3ENSG00000013375.112487.496203805.44770-0.613405.375904.53050HepG2DDX3X
PGM3ENSG00000013375.111265.139001641.97930-0.376103.639302.08880HepG2DDX52
PGM3ENSG00000013375.111780.103702266.15380-0.348301.992401.32490HepG2DDX55
PGM3ENSG00000013375.112465.158503268.32790-0.406903.035002.39120HepG2DDX6
PGM3ENSG00000013375.111636.251902102.25140-0.361504.984404.06620HepG2DNAJC21
PGM3ENSG00000013375.111616.468502083.57910-0.366207.264306.27720HepG2DNAJC2
PGM3ENSG00000013375.111393.228802021.41320-0.536907.800105.95860HepG2EIF2S2
PGM3ENSG00000013375.111635.377502092.09640-0.355303.851802.60460HepG2EIF3G
PGM3ENSG00000013375.112112.872403473.18830-0.717106.589505.60210HepG2EIF4A3
PGM3ENSG00000013375.112249.775104382.84240-0.9621043.5937041.75120HepG2ETF1
PGM3ENSG00000013375.111952.580102715.53090-0.475906.282305.02450HepG2EWSR1
PGM3ENSG00000013375.112598.677702111.247400.299602.687501.55760HepG2FASTKD2
PGM3ENSG00000013375.111692.268602690.99470-0.669207.457706.25800HepG2FIP1L1
PGM3ENSG00000013375.112405.820901886.308700.350902.611401.37470HepG2FKBP4
PGM3ENSG00000013375.111914.670302633.17500-0.459702.899801.75820HepG2FUS
PGM3ENSG00000013375.112515.241503503.38560-0.478103.787402.98750HepG2FXR1
PGM3ENSG00000013375.111443.884103250.38560-1.1707013.8878012.46000HepG2G3BP1
PGM3ENSG00000013375.111105.666401416.18680-0.357102.580601.72050HepG2GEMIN5
PGM3ENSG00000013375.111361.606002117.38780-0.637004.734003.28800HepG2GRSF1
PGM3ENSG00000013375.112143.605102653.13420-0.307704.677403.43900HepG2HDGF
PGM3ENSG00000013375.111447.756002122.39040-0.551907.299806.32500HepG2HNRNPA1
PGM3ENSG00000013375.111262.969202360.73080-0.9024017.3211015.73560HepG2HNRNPC
PGM3ENSG00000013375.111389.228801856.46990-0.418304.740303.53320HepG2HNRNPM
PGM3ENSG00000013375.11928.632502345.12570-1.3365063.7143061.20950HepG2HNRNPU
PGM3ENSG00000013375.112104.744802395.47450-0.186702.676101.95510HepG2ILF2
PGM3ENSG00000013375.111886.562902540.33470-0.4293010.519108.65990HepG2KIF1C
PGM3ENSG00000013375.112049.402803524.36840-0.782208.167807.13190HepG2MATR3
PGM3ENSG00000013375.112099.458103607.50810-0.781008.046906.99220HepG2NCBP2
PGM3ENSG00000013375.112323.940403331.54450-0.519608.060606.78030HepG2NOL12
PGM3ENSG00000013375.111313.381802080.61330-0.663703.501802.26370HepG2NONO
PGM3ENSG00000013375.113710.825402090.564800.827706.206004.84170HepG2PABPC1
PGM3ENSG00000013375.112003.837602321.31810-0.212202.373801.58400HepG2PARN
PGM3ENSG00000013375.112873.044403311.78590-0.205002.478501.89690HepG2PCBP1
PGM3ENSG00000013375.111073.430501315.31580-0.293202.490701.32850HepG2PKM
PGM3ENSG00000013375.111603.206902091.67110-0.383705.409104.40870HepG2PPIL4
PGM3ENSG00000013375.111391.102101962.07740-0.496209.329408.03090HepG2PRPF4
PGM3ENSG00000013375.111930.404402620.62960-0.441002.489501.32910HepG2PRPF6
PGM3ENSG00000013375.111342.477001748.48550-0.381202.557401.78000HepG2PRPF8
PGM3ENSG00000013375.111986.707703369.96990-0.7624025.1864023.85250HepG2PTBP1
PGM3ENSG00000013375.112263.479003180.16860-0.490606.877205.99290HepG2PUF60
PGM3ENSG00000013375.112463.289303375.79310-0.4546014.1355013.01310HepG2PUM1
PGM3ENSG00000013375.111806.741602830.63750-0.6477020.6847019.28140HepG2PUS1
PGM3ENSG00000013375.112777.149003649.53900-0.394105.978905.10940HepG2QKI
PGM3ENSG00000013375.112353.816703139.72920-0.415605.263104.12590HepG2RBM15
PGM3ENSG00000013375.112129.003803663.21970-0.7829024.2654023.03430HepG2RBM22
PGM3ENSG00000013375.112087.845902749.80110-0.397302.381401.46980HepG2RBM27
PGM3ENSG00000013375.112128.849603750.36660-0.8170029.5939028.21790HepG2NELFE
PGM3ENSG00000013375.112222.830503493.11350-0.6521019.8675018.47230HepG2RECQL
PGM3ENSG00000013375.111281.527402285.64070-0.834709.223808.09390HepG2RPLP0
PGM3ENSG00000013375.11674.254001547.58570-1.1987024.8667023.32620HepG2RPS19
PGM3ENSG00000013375.111686.330902536.18290-0.588805.714404.58790HepG2RPS2
PGM3ENSG00000013375.111789.713402296.56860-0.359802.016701.33410HepG2RPS3A
PGM3ENSG00000013375.111906.828402588.74410-0.441103.825802.54830HepG2RPS5
PGM3ENSG00000013375.111280.489301729.64660-0.433802.937402.13000HepG2RRP9
PGM3ENSG00000013375.112945.599102088.459400.4960013.4323012.17160HepG2SAFB2
PGM3ENSG00000013375.11980.925202113.98540-1.107803.144501.67710HepG2SF1
PGM3ENSG00000013375.111722.887103013.86170-0.806808.092806.89680HepG2SF3A3
PGM3ENSG00000013375.112475.136303508.38720-0.5033012.2237011.12050HepG2SF3B4
PGM3ENSG00000013375.111383.720002435.53250-0.8157034.2596032.42570HepG2SMN1
PGM3ENSG00000013375.111877.570102451.51100-0.384802.261001.40450HepG2SMNDC1
PGM3ENSG00000013375.112795.457904137.42660-0.5656019.0113018.00650HepG2SRFBP1
PGM3ENSG00000013375.114207.168103662.072800.200102.878302.39840HepG2SRSF1
PGM3ENSG00000013375.111269.304101993.40610-0.651205.780404.29290HepG2SRSF3
PGM3ENSG00000013375.112308.729703139.83780-0.443609.953008.86390HepG2SRSF5
PGM3ENSG00000013375.112612.632302979.35680-0.189502.332301.81650HepG2SRSF9
PGM3ENSG00000013375.111860.965702529.57670-0.442803.441402.02850HepG2SSRP1
PGM3ENSG00000013375.111345.007601997.65720-0.570704.502603.06580HepG2STIP1
PGM3ENSG00000013375.112504.729003570.95940-0.5117016.1850014.88160HepG2SUCLG1
PGM3ENSG00000013375.111517.708202256.01710-0.571904.859404.00200HepG2SUPV3L1
PGM3ENSG00000013375.112180.121603291.82500-0.5945013.5542012.45150HepG2TAF15
PGM3ENSG00000013375.111202.829702278.86320-0.9219023.1334021.95060HepG2TIAL1
PGM3ENSG00000013375.112632.358403106.73270-0.239002.200701.42780HepG2TUFM
PGM3ENSG00000013375.111095.112402301.78930-1.0717020.8956019.10920HepG2U2AF1
PGM3ENSG00000013375.111188.810402198.20850-0.886802.303001.41370HepG2U2AF2
PGM3ENSG00000013375.111006.613201332.76430-0.404902.841302.07210HepG2UCHL5
PGM3ENSG00000013375.112156.764902672.83590-0.309505.219204.30790HepG2UPF1
PGM3ENSG00000013375.111074.479202580.51600-1.2640059.8212057.59960HepG2UTP3
PGM3ENSG00000013375.111505.607102057.02510-0.450202.809601.70260HepG2XPO5
PGM3ENSG00000013375.111671.327602220.79860-0.410103.061102.29940HepG2XRN2
PGM3ENSG00000013375.111512.781901936.35370-0.356106.350705.40210HepG2ZC3H8
PGM3ENSG00000013375.111871.723702939.60590-0.6513025.0256023.79430HepG2ZNF622
PGM3ENSG00000013375.113184.340804298.47570-0.432809.941308.95070K562AGGF1
PGM3ENSG00000013375.112378.557503308.99580-0.476305.703203.82020K562APOBEC3C
PGM3ENSG00000013375.115083.579303413.143700.574605.346804.57730K562AQR
PGM3ENSG00000013375.112121.608101284.414300.723909.703508.02060K562BOP1
PGM3ENSG00000013375.11576.68810814.16010-0.497504.052802.72740K562CCAR1
PGM3ENSG00000013375.115789.832104612.393100.327903.506202.40600K562CELF1
PGM3ENSG00000013375.112122.925002529.12200-0.252602.469501.84900K562DDX47
PGM3ENSG00000013375.11663.43900911.40320-0.458103.464501.95890K562DHX30
PGM3ENSG00000013375.111462.329302035.67980-0.477207.668606.34900K562EIF3G
PGM3ENSG00000013375.113020.290903750.27030-0.312303.324602.29750K562EIF4G2
PGM3ENSG00000013375.112825.110702177.834300.375304.087802.12460K562FASTKD2
PGM3ENSG00000013375.111787.832801389.635200.363402.368901.57620K562FMR1
PGM3ENSG00000013375.111608.665502808.07650-0.8037023.6759022.02300K562FXR1
PGM3ENSG00000013375.114428.673103061.535100.532504.291103.36800K562G3BP2
PGM3ENSG00000013375.112165.064901303.780400.731608.162306.79510K562GPKOW
PGM3ENSG00000013375.111801.359202207.73360-0.293502.673301.92910K562GRSF1
PGM3ENSG00000013375.11992.213601370.29480-0.465804.960303.37390K562HNRNPF
PGM3ENSG00000013375.111936.623402506.32400-0.372003.520602.51350K562HNRNPU
PGM3ENSG00000013375.112771.692501973.974800.489605.662004.53800K562HSPD1
PGM3ENSG00000013375.112897.335401942.214700.576903.203701.66150K562ILF2
PGM3ENSG00000013375.111618.282901113.418700.539403.896302.77370K562KRR1
PGM3ENSG00000013375.112559.328703340.99440-0.384504.462403.38890K562MAGOH
PGM3ENSG00000013375.112723.277603334.34310-0.292102.890801.94560K562MATR3
PGM3ENSG00000013375.111608.651901272.659800.337902.818201.93250K562METAP2
PGM3ENSG00000013375.113381.681302696.336100.326603.893202.41320K562NCBP2
PGM3ENSG00000013375.112270.333402014.289500.172502.387401.68990K562NSUN2
PGM3ENSG00000013375.112009.187402972.80960-0.565208.115906.40720K562PCBP2
PGM3ENSG00000013375.111138.697301466.02930-0.364503.706202.77230K562POLR2G
PGM3ENSG00000013375.111796.761103245.92310-0.8532020.0668018.35350K562PTBP1
PGM3ENSG00000013375.115142.475304091.676400.329702.804301.98290K562PUF60
PGM3ENSG00000013375.113072.549904435.63660-0.529706.913106.10000K562PUS1
PGM3ENSG00000013375.113588.056304321.96820-0.268503.200702.57030K562RBM15
PGM3ENSG00000013375.112615.824402093.532800.321203.271001.51890K562RBM17
PGM3ENSG00000013375.112435.383703112.90730-0.354103.375502.44200K562RBM22
PGM3ENSG00000013375.112032.587503275.73060-0.688509.160807.10870K562NELFE
PGM3ENSG00000013375.111770.810102524.38690-0.511505.191103.75780K562RPS3
PGM3ENSG00000013375.112437.393303184.34060-0.385705.128403.94440K562SF3B4
PGM3ENSG00000013375.112026.927202436.96320-0.265802.311001.36380K562SRSF4
PGM3ENSG00000013375.112646.363902099.804800.333704.401802.73240K562SSB
PGM3ENSG00000013375.112746.472901747.141200.652508.209505.99540K562STAU1
PGM3ENSG00000013375.111670.054101320.246700.339002.264601.35100K562SUPV3L1
PGM3ENSG00000013375.111044.231201470.39980-0.493806.191104.95580K562SYNCRIP
PGM3ENSG00000013375.112251.163303220.58620-0.516705.993704.92350K562TARDBP
PGM3ENSG00000013375.112142.484101702.820800.331302.714701.34800K562TRIP6
PGM3ENSG00000013375.112637.600001951.910200.434205.001903.28000K562TROVE2
PGM3ENSG00000013375.111968.864501397.317800.494604.933603.53260K562UCHL5
PGM3ENSG00000013375.113178.896002135.802300.5736016.4999014.91380K562UPF1
PGM3ENSG00000013375.112373.235501827.524900.376903.786102.75950K562WDR3
PGM3ENSG00000013375.115657.381304045.779400.483603.250201.83930K562WRN
PGM3ENSG00000013375.115389.421003844.118000.487403.646402.62960K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PGM3 is not available on ENCORE database.





12 RBPs can affect the splicing of PGM3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPGM3ENSG00000013375.11chr6-839005278390073383898332838985178390289783902950-0.351000.000000.00000excludedK562SRSF1
SEPGM3ENSG00000013375.11chr6-839005278390073383898332838985178390289783902950-0.063000.000100.00295excludedK562SF3B4
SEPGM3ENSG00000013375.11chr6-838816558388177883880023838801978388409283884206-0.057000.000240.00641excludedK562SF3B4
SEPGM3ENSG00000013375.11chr6-838883918388847583885680838857798389145483891650-0.206000.001930.06087excludedK562PRPF8
SEPGM3ENSG00000013375.11chr6-838776458387779383875848838761858387896083879042-0.226000.000130.00366excludedHepG2U2AF1
SEPGM3ENSG00000013375.11chr6-839005278390073383898332838985178390289783903012-0.154000.000000.00000excludedK562AQR
SEPGM3ENSG00000013375.11chr6-838883918388847583885680838857798389145483891650-0.120000.000160.00260excludedK562AQR
SEPGM3ENSG00000013375.11chr6-838856808388577983884092838842068388839183888475-0.051000.000410.00805excludedK562PUS1
SEPGM3ENSG00000013375.11chr6-838816558388177883880023838801978388409283884206-0.052000.000520.02568excludedHepG2MATR3
SEPGM3ENSG00000013375.11chr6-839005278390073383898332838985178390289783902950-0.076000.000010.00034excludedK562U2AF1
SEPGM3ENSG00000013375.11chr6-838883918388847583885680838857798389145483891650-0.122000.000510.01304excludedK562U2AF1
SEPGM3ENSG00000013375.11chr6-839005278390073383898332838985178390289783902950-0.069000.000140.00494excludedHepG2SRSF1
SEPGM3ENSG00000013375.11chr6-838883918388847583885680838857798389145483891650-0.096000.001940.05134excludedHepG2SF3A3
SEPGM3ENSG00000013375.11chr6-8388165583881778838800238388019783884092838842060.081000.000240.03508includedHepG2RBFOX2
SEPGM3ENSG00000013375.11chr6-839005518390073383898332838985178390289783902967-0.067000.000040.00287excludedK562UTP18
SEPGM3ENSG00000013375.11chr6-839005278390073383898332838985178390289783902950-0.106000.000000.00001excludedK562TARDBP
A3SSPGM3ENSG00000013375.11chr6-838983328389851783898332838985138390052783900733-0.057000.001890.06788shorterHepG2U2AF1
MXEPGM3ENSG00000013375.11chr6-8389145483891650838925638389269783885680838857798389672683896794-0.094000.001280.024032includedK562U2AF1
MXEPGM3ENSG00000013375.11chr6-83889528838896868389261083892733838883918388847583896726838967940.087000.000010.000131includedK562AQR
MXEPGM3ENSG00000013375.11chr6-8388568083885779838883918388847583884092838842068388952883889686-0.151000.000740.038352includedK562TIA1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PGM3 is not avaliable on ENCORE database.