UPF1

General Information

Gene Name       : UPF1
Gene ID             : ENSG00000005007.12
Essential Gene : Yes

Functions

Localization(RBPImage: UPF1)

Domains (AlphaFold: UPF1)


Antibody Validation

 View validation images for all UPF1 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UPF1ENSG00000005007.1216.5322.7919.66ENCSR000AEF
HepG2UPF1ENSG00000005007.1247.7129.1738.44ENCSR985KAT
K562UPF1ENSG00000005007.1235.4531.7033.58ENCSR000AEO

Assays

4 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 465ENCSR456ASBUPF1K562ReleasedENCAB730BOOENCSR461LGW  
eCLIPeCLIP: 726ENCSR539BEVUPF1HepG2ReleasedENCAB730BOOENCSR042RCU  
knockdown followed by RNA-seq UPF1-BGKLV34-K562ENCSR251ABPUPF1K562ReleasedENCSR174OYC   shRNAKD% = 66.6,53.2
knockdown followed by RNA-seq UPF1-BGHLV33-HepG2ENCSR689MIYUPF1HepG2ReleasedENCSR691IVR   shRNAKD% = 51.6,67.3






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
UPF1465K562ENCSR456ASBENCSR461LGWENCAB730BOORN108PW1ReleasedENCODE3
UPF1726HepG2ENCSR539BEVENCSR042RCUENCAB730BOORN108PW1ReleasedENCODE4


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
UPF1ENCAB730BOORN108PW1Released, ENCODE3Released, ENCODE3BGHLV33-33, Released, ENCODE3BGKLV34-43, Released, ENCODE3
UPF112040S3Released, ENCODE3Submitted, ENCORE2BGHLV33-33, Released, ENCODE3BGKLV34-43, Submitted, ENCORE2


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
UPF1K562shRNAENCSR251ABPENCSR174OYCUPF1_BGKLV34-43,UPF1_BGKLV34-44NT_BGKLV34-1,NT_BGKLV34-266.6,53.2ReleasedENCODE3
UPF1K562shRNABGKLV34-45,BGKLV34-46BGKLV34-1,BGKLV34-2NotSatisfiedENCODE3
UPF1HepG2shRNAENCSR689MIYENCSR691IVRUPF1_BGHLV33-33,UPF1_BGHLV33-34NT_BGHLV33-1,NT_BGHLV33-251.6,67.3ReleasedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    UPF1: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Cytoplasm
  • Compartment/Organelle
  • Unknown Cyto Foci
  • Cytosolic
  • Mitotic-Apparatus (Spindle; Centrosomes)












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    UPF1Product_ID: RN108PW
    Lot_ID: 1
    Source: MBLI
    Target Name: UPF1-human    		 HepG2_MBLI_RN108PW_001_UPF1.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using UPF1 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-UPF1 antibody (lanes under 'UPF1').
    		 UPF1-HEPG2.png<br>Caption: Western blot following shRNA against UPF1 in HepG2 whole cell lysate using UPF1 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against UPF1. UPF1 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
    		 K562_MBLI_RN108PW_001_UPF1.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using UPF1 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 10% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-UPF1 antibody (lanes under 'UPF1').
    		 UPF1-K562.png<br>Caption: Western blot following shRNA against UPF1 in K562 whole cell lysate using UPF1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against UPF1. UPF1 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
    UPF1Product_ID: 12040S
    Lot_ID: 3
    Source: Cell Signaling Technology
    Target Name: UPF1-human    		 CST_12040S_3_UPF1.png<br>Caption: IP-WB analysis of 12040S whole cell lysate using the UPF1 specific antibody, 12040S. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the UPF1-specific antibody, 12040S. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
    		 UPF1-K562-12040S.png<br>Caption: Western blot following shRNA against UPF1 in K562 whole cell lysate using UPF1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNA against UPF1. UPF1 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








    RNA Targets
    • UPF1 protein binds to 22,887 RNA regions.  





    Proteins bound to RNA
    • UPF1 RNA is bound by 47 proteins.  






    UPF1 protein has 22,887 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 22,887 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    UPF1chr172879251728792589+4.736835.07111HepG2CPD3'-UTR,intron-Distal
    UPF1chr204395460243954683-5.7009057.00133HepG2SDC43'-UTR,intron-Distal
    UPF1chr203075466830754728+4.7187624.16307HepG2TM9SF43'-UTR
    UPF1chr14384973843849798-3.373039.82186K562MED83'-UTR,intron-Distal
    UPF1chr11207224912072356+6.7039868.84366K562MFN23'-UTR
    UPF1chr174073207140732105-4.1411410.38393K562FAM134C3'-UTR,intron-Distal
    UPF1chr83761340037613450+4.828035.67997HepG2ERLIN23'-UTR
    UPF1chr71272878512728871+3.884419.01626K562ARL4A3'-UTR,polyA_site
    UPF1chr13209559532095661-4.3510915.61943K562PEF13'-UTR,intron-Distal
    UPF1chr1150547481150547521-3.2131711.13067K562MCL13'-UTR,intron-Distal
    UPF1chr162967738629677463+5.5651445.95094K562SPN, QPRT3'-UTR,intron-Distal
    UPF1chr203075343030753516+4.0485923.75073HepG2TM9SF43'-UTR
    UPF1chr1266795756679654-5.320049.46220HepG2CHD43'-UTR,intron-Distal
    UPF1chr12109887146109887218-4.168737.49447K562KCTD103'-UTR,intron-Distal
    UPF1chr107557258375572647-4.349217.89119K562CAMK2G3'-UTR,intron-Distal
    UPF1chr221938192919382005-3.4510912.53535K562C22orf39, HIRA3'-UTR,CDS,intron-Distal
    UPF1chr116462077864620822-5.4318819.33267K562EHD13'-UTR,intron-Distal
    UPF1chr174843795248438091+5.4871529.11344HepG2XYLT23'-UTR,intron-Distal
    UPF1chr12679748526797560+4.137238.62096K562DHDDS3'-UTR
    UPF1chr1224380591224380697+5.0176528.42816HepG2DEGS13'-UTR,intron-Proximal
    UPF1chr191855422418554355-5.9240940.29965K562AC010335.1, ELL3'-UTR,intron-Distal
    UPF1chr1230417314230417370+6.9444734.83661HepG2GALNT23'-UTR
    UPF1chr15552522755525251+3.543809.27333HepG2PCSK93'-UTR,CDS,intron-Distal
    UPF1chr1154555333154555428-3.9953019.37461K562ADAR3'-UTR,intron-Distal
    UPF1chr194602962746029704+4.720976.52213HepG2VASP3'-UTR
    UPF1chr184638905646389189+5.413859.83131K562CTIF3'-UTR,intron-Distal,intron-Proximal
    UPF1chr1620363112036448+5.7305312.32677HepG2GFER3'-UTR
    UPF1chr2242384350242384403+3.343187.59462K562FARP23'-UTR,intron-Distal
    UPF1chr1719636981963877-5.098065.93974HepG2SMG63'-UTR,intron-Distal
    UPF1chr418091901809227+5.6957064.70038HepG2FGFR33'-UTR
    UPF1chr162422766124227703+3.1144710.91218K562PRKCB3'-UTR,intron-Distal
    UPF1chr10114575843114575899+4.171143.31330K562VTI1A3'-UTR
    UPF1chr5141000722141000783-3.291894.44982K562HDAC33'-UTR,intron-Distal
    UPF1chr429402602940330-4.571446.86497HepG2NOP143'-UTR,intron-Distal
    UPF1chr158973919789739301+4.9888123.17234HepG2ABHD23'-UTR
    UPF1chr59513085795130936+3.6817126.83183K562RHOBTB33'-UTR,intron-Distal
    UPF1chr5175934549175934594+3.556734.14964K562FAF23'-UTR
    UPF1chr142331532723315438+5.074887.21030HepG2MMP143'-UTR,intron-Distal
    UPF1chr194670056946700664-3.553918.52451K562AC006262.5intron-Distal
    UPF1chr154408666944086725+3.9474110.31199K562SERF23'-UTR,intron-Distal
    UPF1chr35246914552469231-4.6839711.31667HepG2SEMA3G3'-UTR,intron-Distal
    UPF1chr22081843920818515-4.548237.50817K562HS1BP33'-UTR,intron-Distal
    UPF1chr117031844470318574-4.235264.20997HepG2SHANK23'-UTR,intron-Distal
    UPF1chr22726441227264481+4.8054014.32215HepG2TMEM2143'-UTR
    UPF1chr174073268640732759-5.7803357.23745HepG2FAM134C3'-UTR,intron-Distal
    UPF1chr168786546687865486-5.7235439.15044HepG2SLC7A53'-UTR,intron-Distal
    UPF1chr68932030189320375-4.406954.46422K562RNGTT3'-UTR,intron-Distal
    UPF1chr1156219610156219712-4.0150517.39480HepG2SMG53'-UTR,CDS,intron-Distal
    UPF1chr1269755796975631+5.074888.73200HepG2USP53'-UTR
    UPF1chr1110174574110174640+4.195966.48274K562AMPD23'-UTR
    UPF1chr11052004910520101-3.305583.48322HepG2DFFA3'-UTR,intron-Distal
    UPF1chr11620080816200891+4.3185111.65401K562SPENCDS,intron-Distal,intron-Proximal
    UPF1chr34789352447893574-5.5938073.19000K562MAP43'-UTR,intron-Distal,intron-Proximal
    UPF1chr165802969658029792-5.084376.81621K562ZNF3193'-UTR,intron-Distal
    UPF1chr166723215567232238+4.946305.94150HepG2E2F43'-UTR
    UPF1chr175616688856166924+4.7647011.31667HepG2DYNLL23'-UTR
    UPF1chr203082518930825217+5.6818623.93403HepG2POFUT13'-UTR
    UPF1chr3185764236185764288-3.749263.07786HepG2ETV53'-UTR,intron-Distal
    UPF1chr168871871688718778-4.3741446.46931K562MVD3'-UTR,intron-Distal,intron-Proximal
    UPF1chr5137804358137804403+3.185954.63459K562EGR13'-UTR
    UPF1chr12860788428607948+4.9138526.35251K562SESN23'-UTR
    UPF1chr167299381972993939-4.360465.17229HepG2ZFHX3CDS,intron-Distal
    UPF1chr14768341747683494-4.3132139.78010K562TAL13'-UTR,intron-Distal
    UPF1chr11118915174118915240-4.5687871.68546K562HYOU13'-UTR,intron-Distal
    UPF1chr29749888097498987+4.3644123.74598HepG2CNNM33'-UTR
    UPF1chr59611160296111707-3.315494.00430HepG2ERAP13'-UTR,intron-Distal,intron-Proximal
    UPF1chr5177637848177637921+3.814085.64146HepG2HNRNPAB3'-UTR
    UPF1chr224080632440806408-4.595145.24231K562MKL13'-UTR,intron-Distal
    UPF1chr1156713128156713178-6.7554527.46297HepG2HDGF3'-UTR,intron-Distal,intron-Proximal
    UPF1chr1113456184113456263-3.246629.16145HepG2SLC16A13'-UTR,intron-Distal
    UPF1chr26840753368407628-4.661489.59063HepG2RP11-474G23.1, PPP3R13'-UTR,intron-Distal
    UPF1chr2120195754120195811+4.6839711.02367HepG2TMEM373'-UTR
    UPF1chr174712679947126886+7.23833400.00000HepG2IGF2BP13'-UTR,CDS
    UPF1chr2038469193846949+4.532969.30447HepG2MAVS3'-UTR
    UPF1chr223913115839131230-6.7213448.41295HepG2SUN23'-UTR,intron-Distal
    UPF1chr5133308182133308385-3.8761412.56785HepG2VDAC13'-UTR,intron-Distal,intron-Proximal
    UPF1chr9132399837132399966-3.788263.07786HepG2ASB63'-UTR,intron-Distal,intron-Proximal
    UPF1chr724199652420036+5.9562012.58146HepG2EIF3B3'-UTR
    UPF1chr154364483343644882+4.504144.22051K562ADAL3'-UTR
    UPF1chr5150869353150869443+3.239895.09741K562SLC36A13'-UTR
    UPF1chr1952082475208276-3.475054.27354HepG2PTPRSCDS,intron-Distal,intron-Proximal
    UPF1chr194711174247111768+4.2981426.28553K562CALM3CDS,intron-Distal
    UPF1chr173807808338078152-6.69229400.00000HepG2ORMDL33'-UTR,intron-Distal,intron-Proximal
    UPF1chr63294026032940317+3.357813.47114HepG2BRD25'-UTR,intron-Distal
    UPF1chr93346149333461600-3.926727.87505K562NOL63'-UTR,intron-Distal
    UPF1chr191743539717435479-3.926083.07786HepG2ANO8intron-Distal,intron-Proximal
    UPF1chr12133348412133348472-3.179743.47114HepG2GOLGA33'-UTR,intron-Distal
    UPF1chr1829172642917301-3.430966.74785K562LPIN23'-UTR,intron-Distal
    UPF1chr116548676165486895+3.543804.81659HepG2KAT53'-UTR
    UPF1chr163078561330785674+3.883225.09017HepG2RNF403'-UTR,intron-Proximal
    UPF1chr191080241110802461+4.411279.04751K562ILF33'-UTR
    UPF1chr191080256010802625+4.3762512.80730K562ILF33'-UTR
    UPF1chr125760683057606853+3.056443.63807HepG2LRP13'-UTR
    UPF1chr23896173138961807+3.8510910.48414K562GALM3'-UTR,intron-Distal
    UPF1chr12115109472115109549-4.239963.35877HepG2TBX33'-UTR,intron-Distal
    UPF1chr194540680745406870+3.257006.74785K562TOMM403'-UTR
    UPF1chr82892717628927247-5.164308.57616HepG2KIF13B3'-UTR,intron-Distal
    UPF1chr222094157220941630+4.3809130.33753K562MED153'-UTR
    UPF1chr124941493949415044-4.7631380.84964K562KMT2D3'-UTR,intron-Distal
    UPF1chr1228286624228286686+4.86100400.00000K562ARF13'-UTR




    47 proteins are bound to UPF1 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr191897856818978644+3'-UTR4.019639.52145K562AKAP1
    chr191897741018977479+3'-UTR3.555999.93776K562PABPC4
    chr191897768218977782+3'-UTR3.3948710.26761K562AKAP1
    chr191897875818978830+3'-UTR4.1805910.82072K562AKAP1
    chr191897887518978945+3'-UTR5.7394136.73164K562UPF1
    chr191897749718977579+3'-UTR6.2391740.25634HepG2UPF1
    chr191897822018978269+3'-UTR4.103747.03532HepG2UPF1
    chr191897884518978919+3'-UTR5.0127917.10746HepG2UPF1
    chr191897773618977775+3'-UTR5.1860930.90967K562UPF1
    chr191897798518978031+3'-UTR4.3946417.96493K562UPF1
    chr191897770118977778+3'-UTR3.563444.68928K562RBM15
    chr191897829118978368+3'-UTR3.594884.22460K562RBM15
    chr191897843918978485+3'-UTR5.0694620.74309K562UPF1
    chr191897821818978280+3'-UTR3.702536.27135HepG2RBM15
    chr191897771418977768+3'-UTR5.511099.73101HepG2AKAP1
    chr191897874918978812+3'-UTR4.0604532.16511K562UPF1
    chr191897855418978590+3'-UTR5.0795420.23853K562UPF1
    chr191897793318977985+3'-UTR4.8311433.34254K562UPF1
    chr191897790418977933+3'-UTR4.4453617.70314K562UPF1
    chr191897805418978147+3'-UTR4.792238.41727HepG2RBM15
    chr191897860718978654+3'-UTR4.2227315.55454K562UPF1
    chr191897742518977554+3'-UTR5.0070948.06247K562UPF1
    chr191897803118978180+3'-UTR3.530168.91653K562AKAP1
    chr191897829218978371+3'-UTR5.9391743.54384K562UPF1
    chr191897881218978843+3'-UTR4.4270416.64138K562UPF1
    chr191897813418978169+3'-UTR5.2603722.21976K562UPF1
    chr191897697418977017+3'-UTR,intron-Proximal5.120946.59451HepG2PRPF8
    chr191897816118978213+3'-UTR4.557315.85041HepG2AKAP1
    chr191897767018977715+3'-UTR5.5890641.87180K562UPF1
    chr191897769018977791+3'-UTR3.9023815.84143HepG2UPF1
    chr191897789118977999+3'-UTR5.221256.65399HepG2AKAP1
    chr191897743018977497+3'-UTR5.0913833.45043HepG2UPF1
    chr191897766918977714+3'-UTR5.305697.76785HepG2AKAP1
    chr191897742818977504+3'-UTR3.532009.70384HepG2AKAP1
    chr191897874618978845+3'-UTR4.8802222.37098HepG2UPF1
    chr191897891318978946+3'-UTR5.274376.24531K562AKAP1
    chr191897757918977623+3'-UTR5.4789810.64766HepG2UPF1
    chr191897747718977565+3'-UTR4.4907710.79732K562AKAP1
    chr191897868018978713+3'-UTR5.303576.86827K562AKAP1
    chr191897726918977350+3'-UTR,intron-Proximal3.455943.33980HepG2SF3B4
    chr191897822518978270+3'-UTR4.7835023.89344K562UPF1
    chr191897805718978134+3'-UTR5.7153743.07891K562UPF1
    chr191897816018978188+3'-UTR4.822497.39978HepG2UPF1
    chr191897755418977628+3'-UTR6.3045335.54329K562UPF1
    chr191897739518977410+3'-UTR4.782249.84602K562PABPC4
    chr191897806618978133+3'-UTR4.0524513.67204HepG2UPF1
    chr191897771618977736+3'-UTR4.4466823.45029K562UPF1
    chr191897750418977594+3'-UTR3.935099.96705HepG2AKAP1
    chr191897874818978923+3'-UTR4.1065015.94889HepG2AKAP1
    chr191897850518978539+3'-UTR5.3896218.31248K562UPF1
    chr191894297218943055+5'-UTR,CDS3.562375.93591K562FXR2
    chr191894278418942838+5'-UTR4.161733.84029K562DROSHA
    chr191894284818942989+5'-UTR3.093917.14284HepG2DDX3X
    chr191894296818943053+5'-UTR,CDS4.6336710.20791K562FMR1
    chr191894276818942896+5'-UTR4.000437.38342HepG2NCBP2
    chr191894285118942981+5'-UTR3.536407.98234K562DDX3X
    chr191894277318942851+5'-UTR3.556745.34973K562GEMIN5
    chr191894288518942946+5'-UTR3.517703.04831K562RBM15
    chr191896584018965860+CDS,intron-Proximal3.564965.34140HepG2PRPF8
    chr191896305018963099+CDS4.538895.85983HepG2GRWD1
    chr191896699518967017+CDS3.101484.39623HepG2PPIG
    chr191896541718965480+CDS3.538128.12996HepG2PPIG
    chr191896309218963119+CDS,intron-Proximal4.6178114.13178HepG2PRPF8
    chr191894305318943106+CDS5.8191710.99684K562FMR1
    chr191896298318963029+CDS3.419383.72202HepG2G3BP1
    chr191896777418967825+CDS4.150787.79455HepG2PPIG
    chr191895691218956976+CDS,intron-Proximal5.0563013.10719HepG2PRPF8
    chr191897170218971748+CDS3.310646.35478K562YBX3
    chr191896812818968262+CDS,intron-Proximal4.7966113.32758K562FXR2
    chr191895855518958632+CDS3.424347.52043HepG2GRWD1
    chr191896701218967084+CDS4.388976.26041K562FXR2
    chr191895678918956857+CDS3.739267.14100K562FMR1
    chr191897622618976260+CDS,intron-Proximal3.131234.85880HepG2PPIG
    chr191896087318960910+CDS,intron-Proximal3.869945.81804K562BUD13
    chr191897293718972997+CDS,intron-Proximal4.686184.28193HepG2AQR
    chr191896291718962991+CDS,intron-Proximal5.0323012.21485K562AQR
    chr191896676318966819+CDS3.662147.26626HepG2PPIG
    chr191896775618967828+CDS4.5996120.80485K562FXR2
    chr191894306018943078+CDS4.444453.48187K562RBM15
    chr191896667618966765+CDS,intron-Proximal3.688274.83230K562AQR
    chr191896149518961539+CDS,intron-Proximal3.839935.29272K562BUD13
    chr191896406018964147+CDS,intron-Proximal3.917607.63447K562FMR1
    chr191896776618967828+CDS4.318703.67707K562METAP2
    chr191896761318967689+CDS,intron-Proximal3.391134.94119K562SF3B4
    chr191896775718967830+CDS,intron-Proximal5.2368910.00238K562FXR1
    chr191896293918963038+CDS,intron-Proximal3.0857810.00177HepG2BUD13
    chr191896775718967828+CDS5.5361218.67838K562FMR1
    chr191896295218963036+CDS3.789336.98424K562UCHL5
    chr191897605318976108+CDS,intron-Proximal4.422564.92499HepG2AQR
    chr191896386218963877+CDS3.258643.34848HepG2PPIG
    chr191896384418963882+CDS,intron-Proximal3.274443.21251K562DDX24
    chr191896304618963099+CDS4.710459.05846K562FMR1
    chr191894314018943187+CDS4.7045911.24739K562FXR2
    chr191896667918966757+CDS,intron-Proximal3.470634.84742HepG2SF3B4
    chr191896543318965482+CDS3.993415.66107K562FXR2
    chr191897163418971695+CDS,intron-Proximal4.418585.16762K562YBX3
    chr191896103018961048+CDS3.127683.39477K562BUD13
    chr191896679318966861+CDS4.366918.53601K562FMR1
    chr191896408418964133+CDS5.115828.49462K562FXR2
    chr191896548618965519+CDS,intron-Proximal3.313737.09278HepG2PPIG
    chr191896102818961091+CDS,intron-Proximal3.142638.54207HepG2PRPF8
    chr191896813518968216+CDS5.7424711.29529K562FMR1
    chr191895689018956928+CDS3.852795.29818K562FXR2
    chr191896167318961713+CDS,intron-Proximal5.0275612.09955HepG2PRPF8
    chr191895679518956929+CDS,intron-Proximal4.6504512.79072HepG2GRWD1
    chr191896406618964158+CDS3.281938.77086HepG2BCLAF1
    chr191896379518963844+CDS,intron-Proximal3.974294.66686K562DDX24
    chr191896295018963034+CDS3.235644.41991HepG2SRSF1
    chr191897124518971288+CDS,intron-Proximal3.450884.63311K562AQR
    chr191897288218972958+CDS4.004137.93716K562FXR2
    chr191896404418964122+CDS,intron-Proximal3.693596.28780K562DDX24
    chr191896548318965519+CDS,intron-Proximal3.469145.15500HepG2BCLAF1
    chr191895692618956972+CDS,intron-Proximal5.639739.41643K562AQR
    chr191896571718965839+CDS3.5983510.39367K562YBX3
    chr191897505718975108+CDS,intron-Proximal5.181375.69951K562AQR
    chr191896294418962977+CDS4.491315.85983HepG2GRWD1
    chr191896769218967743+CDS3.053124.52956K562YBX3
    chr191897441818974455+CDS,intron-Proximal5.052197.70650HepG2PRPF8
    chr191896593818966005+CDS3.632733.39008HepG2AQR
    chr191897505518975070+CDS,intron-Proximal4.696478.44604HepG2PRPF8
    chr191895863418958729+CDS,intron-Proximal4.012788.75974K562KHSRP
    chr191896683618966891+CDS4.480306.01390HepG2GRWD1
    chr191894305518943105+CDS4.9394310.90980K562FXR2
    chr191896101218961051+CDS3.100895.21025HepG2PPIG
    chr191896092718960978+CDS3.632447.08812K562FMR1
    chr191896673118966815+CDS,intron-Proximal4.704195.71225HepG2G3BP1
    chr191895860518958712+CDS,intron-Proximal3.262479.01406K562PRPF8
    chr191896310418963113+CDS,intron-Proximal3.331157.85418K562AQR
    chr191896297718963034+CDS3.232935.73981HepG2GRWD1
    chr191896165418961687+CDS,intron-Proximal3.553986.82013HepG2PPIG
    chr191896100618961039+CDS4.712154.75028K562FXR2
    chr191897497718975033+CDS,intron-Proximal4.953968.41567K562YBX3
    chr191896708918967149+CDS,intron-Proximal4.2309013.58524HepG2PRPF8
    chr191896770718967756+CDS5.0254713.96543K562FXR2
    chr191897163418971676+CDS,intron-Proximal3.202323.12941K562UCHL5
    chr191896568718965741+CDS,intron-Proximal3.726787.98982HepG2PPIG
    chr191896305718963104+CDS3.037053.90681K562DDX24
    chr191895679518956859+CDS4.207127.24138K562FXR2
    chr191895692118956966+CDS,intron-Proximal3.337603.90373HepG2AQR
    chr191896541918965477+CDS4.230406.50481K562FMR1
    chr191896539718965460+CDS,intron-Proximal3.968785.56912HepG2AQR
    chr191894307818943107+CDS4.644083.81597K562RBM15
    chr191896604318966101+CDS,intron-Proximal3.4180912.76115HepG2PRPF8
    chr191896167618961702+CDS,intron-Proximal4.136868.29266K562AQR
    chr191894314118943231+CDS4.3681013.13398K562FMR1
    chr191896380318963873+CDS3.187845.63425HepG2BCLAF1
    chr191896158618961639+CDS3.316484.04629HepG2G3BP1
    chr191896294018963034+CDS,intron-Proximal3.4074310.79740HepG2PPIG
    chr191897497818975009+CDS,intron-Proximal3.780963.11282HepG2G3BP1
    chr191897657618976626+CDS,intron-Proximal3.450557.29769HepG2PRPF8
    chr191895688418956928+CDS3.953165.40651HepG2PPIG
    chr191896572018965801+CDS4.324807.39346K562DDX24
    chr191897496818975012+CDS,intron-Proximal4.623633.62536K562AQR
    chr191896678818966861+CDS4.311808.89719K562FXR2
    chr191896381118963858+CDS3.254043.85127HepG2GRWD1
    chr191896598018966041+CDS5.048207.14198K562FMR1
    chr191896570718965748+CDS5.249568.15057K562FXR2
    chr191896702318967070+CDS5.5564410.92461K562FMR1
    chr191896406618964134+CDS3.944767.91821HepG2GRWD1
    chr191896145618961526+CDS,intron-Proximal3.640613.96535HepG2AQR
    chr191897291118972961+CDS4.418714.65678K562METAP2
    chr191896143818961506+CDS,intron-Proximal3.610004.59518HepG2SF3B4
    chr191897434818974421+CDS3.529703.09919HepG2YBX3
    chr191894318718943229+CDS4.308897.24138K562FXR2
    chr191896831618968356+CDS,intron-Proximal3.5448316.00341HepG2PRPF8
    chr191896701718967108+CDS3.7074112.53168HepG2PPIG
    chr191896542418965474+CDS3.660223.95301K562ZNF622
    chr191897425418974310+CDS3.202955.34378K562YBX3
    chr191896673618966764+CDS4.720455.76079K562FXR2
    chr191896092818960966+CDS3.144474.24993HepG2PPIG
    chr191895863718958690+CDS,intron-Proximal5.204037.36776HepG2PRPF8
    chr191896149718961520+CDS3.264974.24993HepG2PPIG
    chr191896304718963103+CDS4.6124810.23634K562FXR2
    chr191897178118971834+CDS,intron-Proximal3.7766810.59445HepG2PRPF8
    chr191897623818976305+CDS,intron-Proximal3.329807.96871HepG2PRPF8
    chr191897296018972973+CDS,intron-Proximal4.996515.35117HepG2PRPF8
    chr191896850918968602+intron-Distal5.245376.38758HepG2SLTM
    chr191896333718963393+intron-Distal3.707328.05393HepG2U2AF2
    chr191895633018956452+intron-Distal3.913556.77154K562NONO
    chr191895107618951125+intron-Distal3.759443.89328K562EIF4G2
    chr191895224018952320+intron-Distal4.646585.59071K562NONO
    chr191896315418963212+intron-Distal,intron-Proximal3.704678.67297HepG2U2AF2
    chr191896351418963578+intron-Distal4.600683.60286K562U2AF1
    chr191896493018965019+intron-Distal4.730274.51377K562HNRNPM
    chr191896349518963572+intron-Distal5.2876510.80143HepG2U2AF1
    chr191896317318963227+intron-Distal,intron-Proximal3.892945.03105K562BUD13
    chr191896361118963690+intron-Distal4.4735016.34081HepG2U2AF2
    chr191896344718963553+intron-Distal3.9560810.31275HepG2HNRNPK
    chr191894435618944433+intron-Distal4.166094.61288HepG2PRPF4
    chr191896438118964490+intron-Distal3.384183.11000HepG2HNRNPM
    chr191896192318961998+intron-Distal,intron-Proximal3.879353.86417HepG2PRPF4
    chr191895212818952181+intron-Distal3.438444.48585K562NONO
    chr191895697018957034+intron-Distal,intron-Proximal4.023025.09344HepG2XPO5
    chr191895105618951121+intron-Distal4.048123.07834HepG2STAU2
    chr191896919418969266+intron-Distal4.039793.51664K562RBM15
    chr191895931018959366+intron-Distal,intron-Proximal3.386093.66782HepG2HNRNPM
    chr191894445218944542+intron-Distal3.764935.61877K562NONO
    chr191894437518944427+intron-Distal4.840963.59041K562DROSHA
    chr191896346118963562+intron-Distal5.028557.95088HepG2PCBP1
    chr191895146118951535+intron-Distal3.085453.89711K562NONO
    chr191896348918963569+intron-Distal4.3226020.44056HepG2U2AF2
    chr191896171318961787+intron-Distal,intron-Proximal3.770358.24855HepG2PRPF8
    chr191895143818951508+intron-Distal3.183193.72699HepG2PRPF4
    chr191896358518963680+intron-Distal4.466135.11295K562U2AF2
    chr191894333218943380+intron-Distal,intron-Proximal4.411015.17013K562RBM15
    chr191895135718951403+intron-Distal3.102383.61506K562NONO
    chr191895092518950974+intron-Distal3.808133.43867K562CSTF2T
    chr191896333518963405+intron-Distal4.408854.38653HepG2U2AF1
    chr191896345918963557+intron-Distal5.240779.47642K562PCBP1
    chr191895079018950844+intron-Distal4.821255.15564HepG2FAM120A
    chr191895120818951270+intron-Distal3.256373.04847HepG2CSTF2T
    chr191896346418963570+intron-Distal6.8741240.51599HepG2PCBP2
    chr191895839518958468+intron-Distal,intron-Proximal4.465085.46313K562KHSRP
    chr191895102418951129+intron-Distal3.759644.17049K562TARDBP
    chr191895454318954607+intron-Distal4.054683.91772K562TARDBP
    chr191896312918963211+intron-Distal,intron-Proximal3.8089513.64989HepG2BUD13
    chr191896502618965109+intron-Distal4.391234.51377K562HNRNPM
    chr191897455118974639+intron-Distal5.030827.21051K562PRPF8
    chr191894438518944441+intron-Distal4.317784.84226K562NONO
    chr191895152718951689+intron-Distal3.997804.56225K562FUS
    chr191896316018963229+intron-Distal,intron-Proximal5.6838820.29902HepG2EFTUD2
    chr191896347618963571+intron-Distal3.025867.88810HepG2DDX59
    chr191896835618968388+intron-Proximal3.6716513.84285HepG2PRPF8
    chr191896105118961058+intron-Proximal4.869559.08030K562AQR
    chr191896607618966139+intron-Proximal3.723464.58287K562PRPF8
    chr191896372118963777+intron-Proximal5.061397.30082HepG2SF3B4
    chr191896783018967858+intron-Proximal3.959985.61068HepG2PRPF8
    chr191897507018975104+intron-Proximal5.8542212.15317HepG2PRPF8
    chr191897297118973035+intron-Proximal4.188324.17531HepG2RBFOX2
    chr191896311918963166+intron-Proximal4.3745517.14065HepG2PRPF8
    chr191896399118964048+intron-Proximal5.550938.42776K562SF3B4
    chr191896311318963158+intron-Proximal4.2174412.78085K562AQR
    chr191896710918967158+intron-Proximal5.8121111.02807K562AQR
    chr191894324918943289+intron-Proximal4.072514.45914HepG2PRPF8
    chr191897631518976368+intron-Proximal4.922257.84160HepG2SF3B4
    chr191897629518976356+intron-Proximal4.353013.93614HepG2AQR
    chr191896834218968384+intron-Proximal4.612279.08030K562AQR
    chr191896416418964238+intron-Proximal4.527317.92018K562AQR
    chr191896761018967668+intron-Proximal4.3596210.14692HepG2SF3B4
    chr191896606918966099+intron-Proximal4.8121110.08262K562AQR
    chr191896109818961128+intron-Proximal5.199637.23718K562AQR
    chr191896311518963160+intron-Proximal4.233988.08764HepG2EFTUD2
    chr191896170218961721+intron-Proximal5.0135810.60410K562AQR
    chr191896169918961777+intron-Proximal4.5229210.18833HepG2EFTUD2
    chr191896105818961095+intron-Proximal6.6208017.35737K562AQR
    chr191896419818964253+intron-Proximal5.232096.15027K562EFTUD2
    chr191896609918966140+intron-Proximal5.284597.28294K562AQR
    chr191896586018965897+intron-Proximal4.241628.17589HepG2PRPF8
    chr191896606218966130+intron-Proximal4.439735.45992HepG2SUPV3L1
    chr191897658718976658+intron-Proximal5.278567.63570K562AQR
    chr191896556518965650+intron-Proximal4.308094.75425K562EFTUD2
    chr191896692118966983+intron-Proximal3.587754.70265HepG2AQR
    chr191897297318973001+intron-Proximal4.015194.75655HepG2PRPF8
    chr191896370118963772+intron-Proximal4.551525.22351HepG2RBM5
    chr191897296118973004+intron-Proximal5.243367.23718K562AQR
    chr191896782918967869+intron-Proximal5.038675.65342K562AQR
    chr191896399618964042+intron-Proximal4.8011513.00007HepG2SF3B4
    chr191897603818976095+intron-Proximal3.428724.59518HepG2SF3B4
    chr191896608318966128+intron-Proximal4.268973.44423K562BUD13
    chr191896419718964235+intron-Proximal3.272433.50696K562BUD13
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    The UPF1 protein binds to its own RNA.

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    UPF1chr191897887518978945+5.7394136.73164K562UPF13'-UTR
    UPF1chr191897749718977579+6.2391740.25634HepG2UPF13'-UTR
    UPF1chr191897822018978269+4.103747.03532HepG2UPF13'-UTR
    UPF1chr191897884518978919+5.0127917.10746HepG2UPF13'-UTR
    UPF1chr191897773618977775+5.1860930.90967K562UPF13'-UTR
    UPF1chr191897798518978031+4.3946417.96493K562UPF13'-UTR
    UPF1chr191897843918978485+5.0694620.74309K562UPF13'-UTR
    UPF1chr191897874918978812+4.0604532.16511K562UPF13'-UTR
    UPF1chr191897855418978590+5.0795420.23853K562UPF13'-UTR
    UPF1chr191897793318977985+4.8311433.34254K562UPF13'-UTR
    UPF1chr191897790418977933+4.4453617.70314K562UPF13'-UTR
    UPF1chr191897860718978654+4.2227315.55454K562UPF13'-UTR
    UPF1chr191897742518977554+5.0070948.06247K562UPF13'-UTR
    UPF1chr191897829218978371+5.9391743.54384K562UPF13'-UTR
    UPF1chr191897881218978843+4.4270416.64138K562UPF13'-UTR
    UPF1chr191897813418978169+5.2603722.21976K562UPF13'-UTR
    UPF1chr191897767018977715+5.5890641.87180K562UPF13'-UTR
    UPF1chr191897769018977791+3.9023815.84143HepG2UPF13'-UTR
    UPF1chr191897743018977497+5.0913833.45043HepG2UPF13'-UTR
    UPF1chr191897874618978845+4.8802222.37098HepG2UPF13'-UTR
    UPF1chr191897757918977623+5.4789810.64766HepG2UPF13'-UTR
    UPF1chr191897822518978270+4.7835023.89344K562UPF13'-UTR
    UPF1chr191897805718978134+5.7153743.07891K562UPF13'-UTR
    UPF1chr191897816018978188+4.822497.39978HepG2UPF13'-UTR
    UPF1chr191897755418977628+6.3045335.54329K562UPF13'-UTR
    UPF1chr191897806618978133+4.0524513.67204HepG2UPF13'-UTR
    UPF1chr191897771618977736+4.4466823.45029K562UPF13'-UTR
    UPF1chr191897850518978539+5.3896218.31248K562UPF13'-UTR


    Diffrential Expression
    • 12,512 differentially expressed genes after Knockdown/Knockout UPF1 protein.  





    • 107 RBPs can affect the levels of UPF1.  







    12,512 differentially expressed genes after Knockdown/Knockout UPF1 protein :

    Only display 100 entries as example. Please click "View All" button to see all 12,512 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    TSPAN6ENSG00000000003.101829.596601495.968500.290303.985003.17060HepG2UPF1
    DPM1ENSG00000000419.81385.780501779.20060-0.360504.848903.96540HepG2UPF1
    SCYL3ENSG00000000457.9218.82770142.909400.614603.304502.55240HepG2UPF1
    C1orf112ENSG00000000460.12126.51230317.30920-1.3266015.0203013.64440HepG2UPF1
    FUCA2ENSG00000001036.93468.775802723.730200.348707.143706.10840HepG2UPF1
    NFYAENSG00000001167.10947.734601178.17470-0.314003.601102.82010HepG2UPF1
    LAS1LENSG00000001497.12510.37460728.32780-0.513006.035805.06970HepG2UPF1
    SEMA3FENSG00000001617.7340.95640480.30950-0.494403.377502.61860HepG2UPF1
    ANKIB1ENSG00000001629.51507.059701216.337800.309104.077103.25440HepG2UPF1
    KRIT1ENSG00000001631.10752.21120893.15390-0.247802.075701.45580HepG2UPF1
    BADENSG00000002330.9184.42500110.669700.736703.826903.02570HepG2UPF1
    LAP3ENSG00000002549.81520.880201939.03360-0.350405.665604.72260HepG2UPF1
    CD99ENSG00000002586.131475.057303022.55490-1.0350047.7169045.58430HepG2UPF1
    SNX11ENSG00000002919.10263.63760187.032200.495202.775602.07420HepG2UPF1
    M6PRENSG00000003056.32249.939901873.706800.263903.708902.91920HepG2UPF1
    DBNDD1ENSG00000003249.91374.98760943.997200.5425010.231109.03660HepG2UPF1
    ALS2ENSG00000003393.101764.990201519.261800.216202.398201.74050HepG2UPF1
    CASP10ENSG00000003400.10862.87820636.358800.439205.158304.25160HepG2UPF1
    SLC7A2ENSG00000003989.129270.078707196.069400.365303.708602.91910HepG2UPF1
    PLXND1ENSG00000004399.83001.576002035.834900.5600015.3969014.00360HepG2UPF1
    AK2ENSG00000004455.122703.916703292.10260-0.284004.564803.70430HepG2UPF1
    KDM1AENSG00000004487.112487.905503394.98610-0.4485011.187109.95460HepG2UPF1
    ARHGAP33ENSG00000004777.14288.67740408.26290-0.500003.827403.02610HepG2UPF1
    NDUFAB1ENSG00000004779.5926.730201124.71900-0.279302.891402.17940HepG2UPF1
    ST7ENSG00000004866.14701.88370535.916500.389103.775802.97970HepG2UPF1
    CDC27ENSG00000004897.72550.274603218.95510-0.335906.381105.39230HepG2UPF1
    UPF1ENSG00000005007.81757.652802481.92240-0.4978011.6360010.38260HepG2UPF1
    SKAP2ENSG00000005020.8732.80510517.034200.503105.899604.94120HepG2UPF1
    POLR2JENSG00000005075.11494.51290922.04520-0.8988018.3593016.86600HepG2UPF1
    DHX33ENSG00000005100.8931.371901433.30190-0.6219013.0151011.70820HepG2UPF1
    LIG3ENSG00000005156.7571.05700904.41970-0.663409.213308.06690HepG2UPF1
    RPAP3ENSG00000005175.5483.29370630.50830-0.383603.478202.70920HepG2UPF1
    ACSM3ENSG00000005187.7626.701101098.14980-0.8092017.4206015.96310HepG2UPF1
    SPPL2BENSG00000005206.12947.16490742.640600.350903.813003.01350HepG2UPF1
    CREBBPENSG00000005339.82729.741503066.78540-0.168001.953701.35000HepG2UPF1
    CROTENSG00000005469.7669.59070238.178401.4911013.4710012.14860HepG2UPF1
    ABCB4ENSG00000005471.11921.71910752.202300.293102.777702.07610HepG2UPF1
    RHBDD2ENSG00000005486.121405.29180676.770501.0540032.8849031.03480HepG2UPF1
    FBXL3ENSG00000005812.6318.40650477.74700-0.585405.509504.57610HepG2UPF1
    PDK2ENSG00000005882.7453.58020691.70020-0.608807.846206.76810HepG2UPF1
    ITGA3ENSG00000005884.13312.6091037.147803.072906.783205.76850HepG2UPF1
    ZFXENSG00000005889.111498.483101803.29190-0.267103.434902.67060HepG2UPF1
    ASB4ENSG00000005981.8132.4781028.867202.1982014.6483013.28330HepG2UPF1
    GDE1ENSG00000006007.74214.831801677.608501.3290086.7274084.09020HepG2UPF1
    CRLF1ENSG00000006016.64646.065902834.396500.712909.056507.91640HepG2UPF1
    TMEM98ENSG00000006042.71721.783501348.028600.353005.482804.55120HepG2UPF1
    MAP3K14ENSG00000006062.9250.69840118.152401.085209.134507.99190HepG2UPF1
    TMEM132AENSG00000006118.10431.61560765.35430-0.8264014.0325012.69010HepG2UPF1
    AP2B1ENSG00000006125.125165.815504153.946600.314406.696805.68710HepG2UPF1
    CX3CL1ENSG00000006210.64924.833103512.244400.4876014.6930013.32590HepG2UPF1
    SPATA20ENSG00000006282.151931.786101205.071000.6807014.0182012.67620HepG2UPF1
    TNFRSF12AENSG00000006327.9833.21700422.635500.9792014.4798013.11890HepG2UPF1
    MAP3K9ENSG00000006432.11837.08400655.471100.352703.514802.74230HepG2UPF1
    BAIAP2L1ENSG00000006453.9863.00450717.617400.266102.307901.66110HepG2UPF1
    AGKENSG00000006530.11410.99620599.18740-0.543905.795204.84350HepG2UPF1
    DBF4ENSG00000006634.3256.73820555.53600-1.1136018.1349016.65260HepG2UPF1
    IFRD1ENSG00000006652.9877.09870608.966400.526307.362706.31490HepG2UPF1
    UPP2ENSG00000007001.840.073106.963002.524805.768204.81770HepG2UPF1
    MARK4ENSG00000007047.10729.07060958.07950-0.394102.814602.11030HepG2UPF1
    NOS2ENSG00000007171.12100.079900.0000099999.9999015.8041014.39960HepG2UPF1
    KIAA0100ENSG00000007202.105125.179404259.419400.266803.637202.85230HepG2UPF1
    GAS7ENSG00000007237.1411.9159062.37630-2.388107.882706.80220HepG2UPF1
    TRAPPC6AENSG00000007255.6114.3010073.533900.636302.068101.44920HepG2UPF1
    DNAJC11ENSG00000007923.111289.957302016.38620-0.6444016.8920015.45350HepG2UPF1
    MYLIPENSG00000007944.10204.7491087.689201.223309.185908.04000HepG2UPF1
    E2F2ENSG00000007968.6106.82650270.00700-1.3377013.1120011.80180HepG2UPF1
    NADKENSG00000008130.111446.177001217.353200.248402.383701.72750HepG2UPF1
    ADAM22ENSG00000008277.10336.81580421.75300-0.324401.941701.33900HepG2UPF1
    PLEKHG6ENSG00000008323.11571.97970466.178300.295002.099501.47670HepG2UPF1
    NFIXENSG00000008441.12451.60230752.96400-0.7375011.6214010.36900HepG2UPF1
    ST3GAL1ENSG00000008513.101139.935001684.15930-0.5631012.0956010.82310HepG2UPF1
    IL32ENSG00000008517.124546.783802320.243700.9705037.5334035.57940HepG2UPF1
    MED24ENSG00000008838.131714.820902227.64300-0.377506.773005.75900HepG2UPF1
    HEATR5BENSG00000008869.71002.56670773.538400.374104.454003.60440HepG2UPF1
    SEC62ENSG00000008952.122709.824103160.06000-0.221803.186102.44680HepG2UPF1
    RPS20ENSG00000008988.53470.148706484.58390-0.9020049.7317047.57930HepG2UPF1
    CSDE1ENSG00000009307.118056.6892011812.73770-0.5521022.4123020.80070HepG2UPF1
    UBE3CENSG00000009335.131684.363901376.182900.291403.842603.03980HepG2UPF1
    IYDENSG00000009765.1017.839603.699102.269702.345401.69410HepG2UPF1
    MLXIPLENSG00000009950.119860.528308036.139700.295106.200005.22200HepG2UPF1
    BAZ1BENSG00000009954.62965.306103840.63830-0.373208.200907.10380HepG2UPF1
    RANBP9ENSG00000010017.91617.135901990.40750-0.299604.350203.50810HepG2UPF1
    ZNF207ENSG00000010244.123512.637104216.51820-0.263504.676103.80700HepG2UPF1
    STARD3NLENSG00000010270.9611.50420481.022400.346202.880702.16990HepG2UPF1
    NCAPD2ENSG00000010292.81626.857303381.08380-1.0554051.8830049.69900HepG2UPF1
    IFFO1ENSG00000010295.15611.97410473.866800.368901.949401.34610HepG2UPF1
    PHF7ENSG00000010318.1593.83980139.25860-0.569501.992301.38310HepG2UPF1
    SEMA3GENSG00000010319.21142.65710909.340500.329402.004801.39390HepG2UPF1
    SLC6A13ENSG00000010379.1139.962403.687003.438006.243405.26280HepG2UPF1
    CD4ENSG00000010610.5166.8387036.301502.2003017.8916016.41680HepG2UPF1
    SCMH1ENSG00000010803.121010.130801959.28030-0.9558033.1502031.28980HepG2UPF1
    CLCN6ENSG00000011021.174412.033003859.834600.192802.707302.01480HepG2UPF1
    TSPAN9ENSG00000011105.72249.592301232.076500.8685030.3357028.54030HepG2UPF1
    AKAP8LENSG00000011243.132040.037801714.138900.251003.196402.45600HepG2UPF1
    MBTD1ENSG00000011258.111217.786801547.58510-0.345804.999604.10350HepG2UPF1
    UTP18ENSG00000011260.9540.56270773.72010-0.517306.410405.42020HepG2UPF1
    PTBP1ENSG00000011304.124524.349406638.28490-0.5531013.7271012.39710HepG2UPF1
    SYT7ENSG00000011347.5690.84910500.992500.463502.727402.03200HepG2UPF1
    ANLNENSG00000011426.6559.357002479.39560-2.1481070.9195068.45840HepG2UPF1
    RABGAP1ENSG00000011454.121077.902701328.09530-0.301103.676902.88940HepG2UPF1
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    107 RBPs can affect the gene expression of UPF1 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    UPF1ENSG00000005007.8844.103701328.01250-0.653802.731101.66570HepG2AATF
    UPF1ENSG00000005007.83272.887702380.949500.458904.211503.06790HepG2ABCF1
    UPF1ENSG00000005007.81988.946602543.91920-0.355006.709605.84700HepG2ACO1
    UPF1ENSG00000005007.81512.020301053.121000.521705.155903.85590HepG2ADAR
    UPF1ENSG00000005007.82029.630003083.08930-0.603202.468401.96320HepG2AKAP1
    UPF1ENSG00000005007.82201.020002555.75000-0.215602.508001.77380HepG2AKAP8L
    UPF1ENSG00000005007.82593.808103281.38980-0.339203.037602.32320HepG2AUH
    UPF1ENSG00000005007.82250.764001342.534700.7454011.6726010.55710HepG2BOP1
    UPF1ENSG00000005007.8908.959201253.79230-0.464004.972203.97490HepG2CALR
    UPF1ENSG00000005007.82864.483802543.220500.171502.248801.63960HepG2CKAP4
    UPF1ENSG00000005007.81307.725001079.977300.276002.598001.61400HepG2YBX3
    UPF1ENSG00000005007.82821.724102352.693800.262204.332703.31800HepG2DDX19B
    UPF1ENSG00000005007.81344.111701081.455100.313603.116301.89310HepG2DDX1
    UPF1ENSG00000005007.81336.159101022.784100.385503.383502.30500HepG2DHX30
    UPF1ENSG00000005007.83078.300702433.803600.338805.798304.88380HepG2DKC1
    UPF1ENSG00000005007.81464.150601051.111500.478009.590708.46500HepG2DNAJC2
    UPF1ENSG00000005007.81503.053302624.24790-0.804003.109602.38350HepG2EIF4B
    UPF1ENSG00000005007.82811.692203767.60240-0.422209.473408.47020HepG2ETF1
    UPF1ENSG00000005007.81704.541502404.10200-0.496104.116703.19300HepG2FIP1L1
    UPF1ENSG00000005007.8807.097701234.67560-0.613302.251901.34510HepG2FTO
    UPF1ENSG00000005007.81842.859602522.34920-0.452802.217501.61880HepG2G3BP1
    UPF1ENSG00000005007.81679.568101142.367000.556003.278201.78770HepG2HNRNPA0
    UPF1ENSG00000005007.81423.859801070.575500.411302.322501.72590HepG2HNRNPA1
    UPF1ENSG00000005007.81204.960901746.30650-0.535304.225003.11040HepG2HNRNPA2B1
    UPF1ENSG00000005007.81744.108401190.837100.550404.118803.28550HepG2HNRNPC
    UPF1ENSG00000005007.82536.067901818.562100.479709.508908.27840HepG2HNRNPF
    UPF1ENSG00000005007.81649.215801182.962500.479308.839107.80210HepG2HNRNPU
    UPF1ENSG00000005007.82676.198001790.754100.579509.712308.43310HepG2IGF2BP1
    UPF1ENSG00000005007.81377.379001208.353600.188801.962301.33220HepG2ILF2
    UPF1ENSG00000005007.82034.495802325.37040-0.192802.533301.55490HepG2KIF1C
    UPF1ENSG00000005007.83810.957202720.954300.485903.229002.52080HepG2MAGOH
    UPF1ENSG00000005007.81632.629501945.34650-0.252802.196901.47080HepG2MSI2
    UPF1ENSG00000005007.81281.939101633.60470-0.349703.278201.95100HepG2NAA15
    UPF1ENSG00000005007.82273.581401884.203000.270902.774802.00940HepG2NOL12
    UPF1ENSG00000005007.81621.429001055.104600.619805.149404.17180HepG2PPIL4
    UPF1ENSG00000005007.82262.622302631.87830-0.218102.449901.93000HepG2PTBP1
    UPF1ENSG00000005007.83043.846701798.634900.7589014.4252013.20780HepG2PUF60
    UPF1ENSG00000005007.82789.549501909.328300.5469017.6646016.43320HepG2PUM1
    UPF1ENSG00000005007.82708.287901907.934900.505302.781102.10830HepG2PUM2
    UPF1ENSG00000005007.82268.709303148.99180-0.473008.954308.14420HepG2RBM22
    UPF1ENSG00000005007.82137.856702586.79970-0.275002.104201.51040HepG2RBM25
    UPF1ENSG00000005007.81707.108101228.624000.474403.719002.48800HepG2RCC2
    UPF1ENSG00000005007.81974.315301395.293700.500704.551803.53880HepG2RPS2
    UPF1ENSG00000005007.82023.962701356.263200.577403.582802.67150HepG2RPS3A
    UPF1ENSG00000005007.81652.900201053.468700.6498016.1629014.79880HepG2SAFB2
    UPF1ENSG00000005007.84223.648202798.584000.593704.742303.84450HepG2SF3A3
    UPF1ENSG00000005007.82689.542601724.606200.6410021.7461020.14870HepG2SLBP
    UPF1ENSG00000005007.81646.179301228.502900.422108.224707.20870HepG2SMN1
    UPF1ENSG00000005007.8989.716401468.23910-0.569002.871002.07460HepG2SNRNP70
    UPF1ENSG00000005007.83084.479303556.62330-0.205503.153302.63050HepG2SRFBP1
    UPF1ENSG00000005007.82112.834102859.98450-0.436809.190008.44050HepG2SRSF1
    UPF1ENSG00000005007.82674.654501775.887500.5907015.1971013.89980HepG2SRSF5
    UPF1ENSG00000005007.82293.046201786.713300.359905.612804.67860HepG2SRSF7
    UPF1ENSG00000005007.81689.320002326.81210-0.461909.742308.81690HepG2SRSF9
    UPF1ENSG00000005007.84108.904203087.908800.412009.646908.80290HepG2SSB
    UPF1ENSG00000005007.81769.744201180.242900.584403.645102.36580HepG2STIP1
    UPF1ENSG00000005007.82769.927602019.675400.4556011.3147010.20130HepG2SUCLG1
    UPF1ENSG00000005007.81031.033001491.07280-0.532302.068101.47070HepG2SUPV3L1
    UPF1ENSG00000005007.81373.579602570.86650-0.9043025.8113024.33030HepG2TAF15
    UPF1ENSG00000005007.81743.421002362.06290-0.438105.625504.44640HepG2TIA1
    UPF1ENSG00000005007.82335.684401149.394801.0229027.7976026.51700HepG2TIAL1
    UPF1ENSG00000005007.81776.910101159.749300.6155013.9424012.81430HepG2TRIM56
    UPF1ENSG00000005007.82864.926901757.186700.705108.015406.40430HepG2TUFM
    UPF1ENSG00000005007.82402.954701859.952200.369402.087801.36700HepG2UBE2L3
    UPF1ENSG00000005007.81757.652802481.92240-0.4978011.6360010.38260HepG2UPF1
    UPF1ENSG00000005007.82173.966002551.02220-0.230702.621901.59630HepG2UTP18
    UPF1ENSG00000005007.81756.342101214.880300.531702.827801.71670HepG2XPO5
    UPF1ENSG00000005007.82344.753702729.63070-0.219302.446701.92320HepG2ZNF622
    UPF1ENSG00000005007.85042.611203315.339100.6049014.0731012.89600K562AGGF1
    UPF1ENSG00000005007.84699.168503643.303100.367104.279603.00200K562AKAP8
    UPF1ENSG00000005007.84823.113503449.821200.483306.874505.80720K562AKAP8L
    UPF1ENSG00000005007.84638.813603619.807600.357703.666202.60340K562ATP5C1
    UPF1ENSG00000005007.82743.034302137.197700.360006.204104.74310K562BCLAF1
    UPF1ENSG00000005007.82181.653401621.383200.428105.217903.70200K562CSTF2
    UPF1ENSG00000005007.84287.726203657.532500.229203.242302.54540K562DDX47
    UPF1ENSG00000005007.84403.940703711.874400.246502.904702.00570K562DKC1
    UPF1ENSG00000005007.82492.612801872.061100.412902.809901.88940K562EFTUD2
    UPF1ENSG00000005007.82774.700102003.705900.469602.408401.45110K562EIF3D
    UPF1ENSG00000005007.81558.951701138.112600.453806.238205.06090K562EIF3G
    UPF1ENSG00000005007.83061.633402491.629900.297103.407401.94230K562EWSR1
    UPF1ENSG00000005007.81413.265102063.42030-0.546004.137602.72040K562FKBP4
    UPF1ENSG00000005007.83468.340802968.499300.224402.660902.06560K562FXR1
    UPF1ENSG00000005007.8369.154401000.50080-1.438407.198805.94420K562G3BP2
    UPF1ENSG00000005007.82565.873601876.939100.451002.869301.41530K562GEMIN5
    UPF1ENSG00000005007.82806.785003284.47910-0.226702.373201.32540K562GLRX3
    UPF1ENSG00000005007.82100.096102824.35700-0.427504.317503.32990K562HSPD1
    UPF1ENSG00000005007.82928.842701662.778300.816602.505601.54480K562IGF2BP2
    UPF1ENSG00000005007.8773.762601031.84400-0.415302.303501.46040K562KRR1
    UPF1ENSG00000005007.81818.766402301.10810-0.339403.217001.69230K562LARP7
    UPF1ENSG00000005007.83363.866101746.169500.9458020.8265018.34340K562MAGOH
    UPF1ENSG00000005007.85271.063504101.173500.362005.140403.82370K562MBNL1
    UPF1ENSG00000005007.84530.347205585.08970-0.302003.229502.00570K562MSI2
    UPF1ENSG00000005007.82276.494502850.35310-0.324303.042101.75450K562NCBP2
    UPF1ENSG00000005007.83645.155602149.974300.761604.103702.83760K562PABPN1
    UPF1ENSG00000005007.82297.622201707.510300.428103.167901.72560K562PCBP1
    UPF1ENSG00000005007.82370.778703216.16260-0.440003.880802.89600K562PCBP3
    UPF1ENSG00000005007.82060.139202466.88090-0.259902.475501.72040K562POLR2G
    UPF1ENSG00000005007.82509.415401821.748900.461903.339502.51270K562PRPF8
    UPF1ENSG00000005007.82738.245601696.613600.690509.347308.17540K562PTBP1
    UPF1ENSG00000005007.84937.980906081.97750-0.300604.000102.69590K562PUM1
    UPF1ENSG00000005007.85422.108303420.842500.6644011.2667010.22000K562PUS1
    UPF1ENSG00000005007.85336.156803333.455000.6787011.5565010.35740K562RBM15
    UPF1ENSG00000005007.82394.532501626.115000.558202.958002.08660K562RBM22
    UPF1ENSG00000005007.83093.175301966.282800.653502.748401.55040K562SF1
    UPF1ENSG00000005007.81588.258401039.323600.611704.190303.13360K562SF3B4
    UPF1ENSG00000005007.83899.169202397.229400.701703.127601.70790K562SFPQ
    UPF1ENSG00000005007.8707.013201045.06470-0.563805.885903.33790K562SND1
    UPF1ENSG00000005007.84348.886103878.911500.164902.421601.53890K562SRPK2
    UPF1ENSG00000005007.83116.248801663.398000.9056014.1832012.57780K562SRSF1
    UPF1ENSG00000005007.82001.493601562.979900.356703.520902.31320K562SRSF4
    UPF1ENSG00000005007.82531.405401571.327800.687905.647904.04440K562SRSF5
    UPF1ENSG00000005007.82880.298201683.141900.775006.457405.33420K562TARDBP
    UPF1ENSG00000005007.82775.872901623.665900.773606.645005.29320K562TIA1
    UPF1ENSG00000005007.82735.216101594.069400.778805.281303.66890K562TRA2A
    UPF1ENSG00000005007.8927.425804068.15410-2.13310185.73640182.10690K562UPF1
    UPF1ENSG00000005007.85242.380603836.032500.450506.537504.01050K562UPF2
    UPF1ENSG00000005007.82729.357203480.97360-0.350904.026702.96540K562WDR3
    UPF1ENSG00000005007.82485.053501901.141000.386302.417801.31270K562XRN2
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    436 alternative splicing events after Knockdown/Knockout UPF1 protein :

    Only display 100 entries as example. Please click "View All" button to see all 436 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SETMEM59ENSG00000116209.7chr1-5451293954513045545113645451145954519028545191770.080000.000040.03262includedHepG2UPF1
    SEPIGXENSG00000163964.9chr3+1964535251964536421964492851964494271964547931964550070.151000.000160.07556includedHepG2UPF1
    SEUBP1ENSG00000153560.7chr3-3345018133450289334442923344439633450727334508380.102000.000000.00265includedHepG2UPF1
    SEPKP4ENSG00000144283.17chr2+1595256621595258141595229241595230751595262311595264270.086000.000140.07201includedHepG2UPF1
    SEITGA6ENSG00000091409.10chr2+1733664991733666291733627021733628281733688181733692620.241000.000000.00040includedHepG2UPF1
    SEPLOD2ENSG00000152952.7chr3-1457956481457957111457945681457946821457969021457970440.257000.000000.00000includedHepG2UPF1
    SEIL17RBENSG00000056736.5chr3+5388932053889368538868975388702453890870538910130.133000.000150.07556includedHepG2UPF1
    SETPM1ENSG00000140416.15chr15+6335391163353987633533966335347263354413633544760.094000.000010.01342includedHepG2UPF1
    SESREK1ENSG00000153914.11chr5+6545189265454760654492906544942465455046654551620.262000.000000.00003includedHepG2UPF1
    SEPLEKHM2ENSG00000116786.7chr1+1604782316047883160462281604641516051811160520400.240000.000030.02435includedHepG2UPF1
    SEG3BP2ENSG00000138757.10chr4-7657916676579265765738227657392576580249765804300.087000.000050.03563includedHepG2UPF1
    SESPTAN1ENSG00000197694.9chr9+1313552611313553211313537551313539041313564531313566520.293000.000000.00000includedHepG2UPF1
    SEPICALMENSG00000073921.13chr11-8570129285701442856949088569501685707868857079720.235000.000000.00000includedHepG2UPF1
    SEA1CFENSG00000148584.10chr10-5262379252623840526196015261974552645340526454350.056000.000050.03785includedHepG2UPF1
    SEMACF1ENSG00000127603.19chr1+3994659139946702399454693994568139950272399504020.109000.000000.00000includedHepG2UPF1
    SECEP78ENSG00000148019.8chr9+8088077480880822808802878088045980881357808819830.419000.000010.01584includedHepG2UPF1
    SEBAZ2BENSG00000123636.13chr2-1602535841602536111602522791602523451602538551602539000.420000.000000.00112includedHepG2UPF1
    SEMED23ENSG00000112282.13chr6-1319364631319364811319311851319313861319370461319371420.091000.000100.05905includedHepG2UPF1
    SEARHGEF10LENSG00000074964.12chr1+1796104217961057179588151795896117961329179615110.424000.000000.00000includedHepG2UPF1
    SEIFT88ENSG00000032742.13chr13+2114715921147290211413042114139521148518211486140.134000.000220.09966includedHepG2UPF1
    SELMO7ENSG00000136153.15chr13+7638328976383319763783627637867776391296763914140.161000.000000.00156includedHepG2UPF1
    SEMTA1ENSG00000182979.13chr14+1059330431059330791059316701059329151059358031059358350.111000.000010.00806includedHepG2UPF1
    SEESYT2ENSG00000117868.11chr7-1585454711585455341585423391585424141585521761585522720.190000.000000.00142includedHepG2UPF1
    SEAXIN2ENSG00000168646.8chr17-6353298663533181635324376353267163533441635339530.181000.000060.03888includedHepG2UPF1
    SESMPD4ENSG00000136699.15chr2-1309187581309188451309149331309149691309219461309220180.154000.000130.06875includedHepG2UPF1
    SEFDPSENSG00000160752.10chr1+1552795791552797561552786421552787561552798331552799960.138000.000000.00001includedHepG2UPF1
    SEHGDENSG00000113924.7chr3-1203573011203574281203519931203521751203604351203605400.070000.000200.09183includedHepG2UPF1
    SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.145000.000090.05619includedHepG2UPF1
    SERNASE4ENSG00000258818.2chr14+2116170521161809211528172115291721167513211687100.125000.000010.01442includedHepG2UPF1
    SEATP13A3ENSG00000133657.10chr3-1941329271941330171941234051941268451941344871941345680.218000.000220.09966includedHepG2UPF1
    SEMFFENSG00000168958.15chr2+2282119412282121002282050072282050962282203922282204770.180000.000000.00648includedHepG2UPF1
    SENUPL2ENSG00000136243.12chr7+2323679123236866232362982323638523239076232391610.200000.000130.06889includedHepG2UPF1
    SENT5EENSG00000135318.7chr6+8620022586200375861992118619931786201694862018950.121000.000120.06600includedHepG2UPF1
    SECD46ENSG00000117335.14chr1+2079635972079636902079589632079590272079668632079688580.190000.000000.00000includedHepG2UPF1
    SEKIF13AENSG00000137177.14chr6-1779010217790141177880061778810617794479177946260.277000.000070.04327includedHepG2UPF1
    SEGPR126ENSG00000112414.10chr6+1427048961427049801427030871427031561427113941427114800.346000.000000.00000includedHepG2UPF1
    SEGPR126ENSG00000112414.10chr6+1427620441427620901427593481427595011427644731427674030.313000.000000.00000includedHepG2UPF1
    SEPEG3ENSG00000198300.8chr19-5733850157338614573377555733783157344657573447880.371000.000040.02992includedHepG2UPF1
    SERFC5ENSG00000111445.9chr12+1184554941184558581184545261184546971184568761184569410.065000.000070.04327includedHepG2UPF1
    SERBM39ENSG00000131051.16chr20-3432731434327469343268893432693934328745343288090.119000.000060.03888includedHepG2UPF1
    SECACNA2D4ENSG00000151062.10chr12-1919708191975319194431919506192082719208930.225000.000160.07639includedHepG2UPF1
    SETLN1ENSG00000137076.14chr9-3571835235718403357176153571778335718808357189070.151000.000020.02115includedHepG2UPF1
    SEARHGEF40ENSG00000165801.5chr14+2155547821555622215551592155526421556126215562570.130000.000030.02352includedHepG2UPF1
    SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.259000.000070.04327includedHepG2UPF1
    SETNRC6AENSG00000090905.13chr16+2480479324804970248005522480313824805864248060400.308000.000000.00000includedHepG2UPF1
    SESOS1ENSG00000115904.8chr2-3921641039216455392146133921473239222263392225280.166000.000040.02890includedHepG2UPF1
    SEVSNL1ENSG00000163032.7chr2+1772197117722185177212331772144917773336177735030.165000.000000.00155includedHepG2UPF1
    SEAP2B1ENSG00000006125.12chr17+3399787533997917339846173398481033998772339989190.192000.000010.01411includedHepG2UPF1
    SEPPFIA1ENSG00000131626.11chr11+7019602870196145701942947019452670200406702005580.148000.000000.00260includedHepG2UPF1
    SETET1ENSG00000138336.8chr10+7042556470425654704122577041235170426801704270130.396000.000030.02493includedHepG2UPF1
    SEPDK1ENSG00000152256.9chr2+1734334681734335451734315831734316611734354531734355520.115000.000030.02696includedHepG2UPF1
    SEPNPLA3ENSG00000100344.6chr22+4433521544335333443329304433315244335872443360050.119000.000010.01235includedHepG2UPF1
    SESRSF11ENSG00000116754.9chr1+7069677770696886706941477069423870697950706980600.072000.000170.07987includedHepG2UPF1
    SEGEMIN6ENSG00000152147.6chr2+3900639939006583390061133900626039008658390090890.061000.000040.03304includedHepG2UPF1
    SENAV2ENSG00000166833.15chr11+2007138120071447200702732007074120072834200728790.345000.000010.00720includedHepG2UPF1
    SERPS24ENSG00000138326.14chr10+7979996179799983797969517979706279800372798004550.187000.000000.00000includedHepG2UPF1
    SEAPLP2ENSG00000084234.12chr11+1299935061299936741299921991299924081299965941299967250.087000.000100.06011includedHepG2UPF1
    SEGIGYF2ENSG00000204120.10chr2+2336411212336411872336261052336261462336518592336520390.063000.000080.05219includedHepG2UPF1
    SESELOENSG00000073169.9chr22+506433475064345350639407506400195064474550644949-0.229000.000140.07027excludedHepG2UPF1
    SEARVCFENSG00000099889.9chr22-199587381995885819957420199582661995940819959494-0.436000.000150.07556excludedHepG2UPF1
    SETPCN1ENSG00000186815.8chr12+113726199113726331113725967113726039113726562113726652-0.178000.000130.06906excludedHepG2UPF1
    SEPPP1R7ENSG00000115685.10chr2+242092890242093019242089894242089962242097221242097277-0.101000.000170.07987excludedHepG2UPF1
    SESMC6ENSG00000163029.11chr2-179342441793433117927104179272181793489217935040-0.264000.000110.06192excludedHepG2UPF1
    SEACIN1ENSG00000100813.10chr14-235365222353788023535174235352172353868423538734-0.140000.000080.04875excludedHepG2UPF1
    SEZFYVE19ENSG00000166140.13chr15+411025854110266941102268411024144110284641102955-0.054000.000020.01855excludedHepG2UPF1
    SEPTBP1ENSG00000011304.12chr19+805491805569805012805187806407806556-0.105000.000010.00765excludedHepG2UPF1
    SENASPENSG00000132780.12chr1+460729924607400946072153460722634607884046078920-0.159000.000000.00141excludedHepG2UPF1
    SEOSTF1ENSG00000134996.11chr9+777324197773246677703458777036427774248477742535-0.055000.000110.06098excludedHepG2UPF1
    SEKIAA1217ENSG00000120549.11chr10+247834282478353324762156247629892478407524784125-0.216000.000090.05567excludedHepG2UPF1
    SECD46ENSG00000117335.14chr1+207941123207941168207940357207940540207943665207943707-0.071000.000050.03785excludedHepG2UPF1
    SEMGME1ENSG00000125871.9chr20+179563261795654617950443179507731796880817968941-0.194000.000020.02104excludedHepG2UPF1
    SEMSMO1ENSG00000052802.8chr4+166254491166254777166248872166248916166258940166259089-0.054000.000020.02104excludedHepG2UPF1
    SEF10ENSG00000126218.7chr13+113778258113778402113777151113777239113783765113783926-0.055000.000000.00228excludedHepG2UPF1
    SERHBDD2ENSG00000005486.12chr7+755106827551080475508489755085787551114675511554-0.145000.000040.03000excludedHepG2UPF1
    SEPREPLENSG00000138078.11chr2-445866354458688944573406445735294458851844588945-0.271000.000000.00648excludedHepG2UPF1
    SEGLTSCR2ENSG00000105373.14chr19+482547764825484748254293482543644825576848255816-0.072000.000020.01865excludedHepG2UPF1
    SECUL1ENSG00000055130.11chr7+1484563951484564461484540741484542421484566391484567300.084000.000580.08544includedK562UPF1
    SECREMENSG00000095794.15chr10+3543729535437419354160293541612135467816354679140.159000.000440.07110includedK562UPF1
    SEZHX3ENSG00000174306.17chr20-3982992539830024398070873981384139830696398326810.296000.000500.07669includedK562UPF1
    SESNRNP70ENSG00000104852.10chr19+4960537049606844496046464960472849607890496079920.051000.000000.00000includedK562UPF1
    SEHIST1H2BJENSG00000124635.7chr6-2709504227095209270940572709424127100303271003270.210000.000000.00041includedK562UPF1
    SECUTAENSG00000112514.11chr6-3338564533385782333852573338547233385863333859640.119000.000000.00015includedK562UPF1
    SEATXN2ENSG00000204842.10chr12-1118914801118916491118900711118906441118938321118940600.148000.000010.00337includedK562UPF1
    SEDHX9ENSG00000135829.12chr1+1828247111828248481828231751828233131828256661828257070.068000.000070.01850includedK562UPF1
    SEGMPRENSG00000137198.5chr6+1628965616289799162860231628606616290692162908520.081000.000380.06378includedK562UPF1
    SELINC01088ENSG00000249307.1chr4+8013603480136120801328388013295880227844802278820.164000.000180.03474includedK562UPF1
    SELGALS1ENSG00000100097.7chr22+3807438238074661380730053807307238075609380758090.058000.000010.00374includedK562UPF1
    SEKIF23ENSG00000137807.9chr15+6973310669733418697326466973282669737128697373800.137000.000300.05506includedK562UPF1
    SEDNAH14ENSG00000185842.10chr1+2251478542251480042251426602251428002251521802251523110.100000.000100.02390includedK562UPF1
    SEMKI67ENSG00000148773.8chr10-1299131911299142711299116901299118661299147541299148000.237000.000010.00584includedK562UPF1
    SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.060000.000340.05949includedK562UPF1
    SESIPA1ENSG00000213445.4chr11+6540660665406722654056066540565365408301654087000.241000.000480.07494includedK562UPF1
    SEZNF207ENSG00000010244.12chr17+3069368330693776306923483069250630694790306949620.137000.000000.00057includedK562UPF1
    SEALG8ENSG00000159063.8chr11-7781391977813994778119927781224177815025778150980.096000.000200.03869includedK562UPF1
    SEEMP3ENSG00000142227.6chr19+4882924748829310488288374882886748830777488308870.077000.000380.06468includedK562UPF1
    SENQO2ENSG00000124588.15chr6+3004728300488530002223000319300670130067930.065000.000030.01037includedK562UPF1
    SENQO2ENSG00000124588.15chr6+3015763301587730127773012908301711730172190.124000.000360.06210includedK562UPF1
    SEPSMD6ENSG00000163636.6chr3-6400831864008477640079936400819964008950640091480.057000.000260.04956includedK562UPF1
    SEMYO9AENSG00000066933.11chr15-7218530572185518721803447218045772186019721861190.655000.000050.01536includedK562UPF1
    SENPRL3ENSG00000103148.11chr16-1749351750721691241692541805201805900.243000.000010.00560includedK562UPF1





    6 RBPs can affect the splicing of UPF1 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    A3SSUPF1ENSG00000005007.8chr19+1897422718974421189742461897442118972818189729610.103000.000000.00000longerK562AQR
    A5SSUPF1ENSG00000005007.8chr19+1896379518963913189637951896388018964060189641590.154000.001670.05790longerHepG2U2AF2
    A5SSUPF1ENSG00000005007.8chr19+189637951896391318963795189638801896406018964159-0.211000.000000.00000shorterHepG2SRSF1
    A5SSUPF1ENSG00000005007.8chr19+189637951896391318963795189638801896406018964159-0.084000.000020.02077shorterK562ZC3H8
    A5SSUPF1ENSG00000005007.8chr19+189637951896391318963795189638801896406018964159-0.149000.000000.00000shorterHepG2SRSF7
    A5SSUPF1ENSG00000005007.8chr19+1896379518963913189637951896388018964060189641590.168000.000110.00952longerK562U2AF2
    A5SSUPF1ENSG00000005007.8chr19+1896379518963913189637951896388018964060189641590.091000.000450.04468longerK562UTP18
    A5SSUPF1ENSG00000005007.8chr19+189637951896391318963795189638801896406018964159-0.123000.000000.00000shorterK562SRSF1
    RIUPF1ENSG00000005007.8chr19+1897609718976587189760971897625918976369189765870.064000.000000.00000includedK562AQR

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein UPF1 and its RNA.