VTI1A

General Information

Gene Name       : VTI1A
Gene ID             : ENSG00000151532.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VTI1A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VTI1AENSG00000151532.1316.3415.9216.13ENCSR000AEF
HepG2VTI1AENSG00000151532.1316.4020.0718.23ENCSR985KAT
K562VTI1AENSG00000151532.1310.7710.5310.65ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VTI1A is not avaliable on ENCORE database.



Proteins bound to RNA
  • VTI1A RNA is bound by 15 proteins.  







eCLIP assay for VTI1A is not avaliable on ENCORE database.





15 proteins are bound to VTI1A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10114575843114575899+3'-UTR4.171143.31330K562UPF1
chr10114298033114298093+CDS,intron-Proximal4.023383.34184HepG2GRWD1
chr10114286843114286925+CDS,intron-Proximal3.676665.97823HepG2BCLAF1
chr10114575049114575122+CDS4.003063.34184HepG2GRWD1
chr10114224304114224416+CDS,intron-Proximal3.848814.51739HepG2BCLAF1
chr10114286843114286856+CDS,intron-Proximal4.695875.56813HepG2PPIG
chr10114298027114298104+CDS,intron-Proximal5.169648.65687HepG2PPIG
chr10114286843114286926+CDS,intron-Proximal3.351194.07060HepG2ZNF800
chr10114298004114298115+CDS,intron-Proximal3.952035.36555HepG2BCLAF1
chr10114575049114575128+CDS3.138484.69671HepG2PPIG
chr10114207139114207236+CDS,intron-Proximal4.736756.76290HepG2GRWD1
chr10114224303114224423+CDS,intron-Proximal3.068773.47996HepG2GRWD1
chr10114474461114474613+intron-Distal3.434623.84494HepG2QKI
chr10114502792114502855+intron-Distal3.918233.69425K562TARDBP
chr10114436209114436278+intron-Distal4.542924.87593HepG2MATR3
chr10114305567114305664+intron-Distal3.570894.16402K562TARDBP
chr10114436383114436512+intron-Distal3.381213.00129HepG2SUGP2
chr10114490388114490499+intron-Distal4.9167410.21418K562PTBP1
chr10114493983114494048+intron-Distal3.618526.95650HepG2PCBP2
chr10114490351114490479+intron-Distal5.7789725.37575HepG2PTBP1
chr10114208609114208693+intron-Distal,intron-Proximal3.690574.77518HepG2U2AF2
chr10114463868114464025+intron-Distal3.317595.31346HepG2QKI
chr10114340436114340587+intron-Distal3.856783.86679K562SAFB2
chr10114209970114210062+intron-Distal4.796626.02674K562UPF1
chr10114373276114373353+intron-Distal4.507304.78106HepG2PTBP1
chr10114494113114494218+intron-Distal4.069667.22863HepG2PCBP2
chr10114520129114520206+intron-Distal3.714113.58352HepG2CSTF2
chr10114493109114493194+intron-Distal3.865803.17235HepG2HNRNPK
chr10114332731114332800+intron-Distal4.393774.67082HepG2CSTF2
chr10114433894114433963+intron-Distal3.275855.81842K562PTBP1
chr10114215325114215514+intron-Distal5.7173812.71401HepG2PCBP2
chr10114445220114445304+intron-Distal4.340594.74221HepG2PTBP1
chr10114346360114346457+intron-Distal3.481064.48652HepG2PTBP1
chr10114333074114333150+intron-Distal4.442206.12191HepG2CSTF2
chr10114433899114433990+intron-Distal4.3111410.23386HepG2PTBP1
chr10114436386114436432+intron-Distal4.245033.50357HepG2QKI
chr10114549916114550034+intron-Distal3.185053.69184HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VTI1A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VTI1A is not available on ENCORE database.

  • 56 RBPs can affect the levels of VTI1A.  








The Knockdown/knockout RNA-Seq assay for VTI1A is not available on ENCORE database.





56 RBPs can affect the gene expression of VTI1A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VTI1AENSG00000151532.9752.64220624.995200.268002.195501.64080HepG2ACO1
VTI1AENSG00000151532.91049.79680682.431000.621304.755704.08200HepG2AKAP1
VTI1AENSG00000151532.91051.59640677.184900.634906.937606.03810HepG2BOP1
VTI1AENSG00000151532.9687.33430419.790600.711204.057903.12550HepG2CNOT7
VTI1AENSG00000151532.9265.62010621.70520-1.2269015.2261013.77260HepG2CPSF6
VTI1AENSG00000151532.9673.10270842.88570-0.324503.392302.58660HepG2DAZAP1
VTI1AENSG00000151532.9673.82370530.332000.345402.061901.46650HepG2DDX21
VTI1AENSG00000151532.9474.15270596.57090-0.331302.342201.68890HepG2DNAJC21
VTI1AENSG00000151532.9397.54140591.31710-0.572806.949005.98120HepG2DNAJC2
VTI1AENSG00000151532.9580.45940406.334500.514403.181402.21930HepG2EIF3D
VTI1AENSG00000151532.9515.08070796.57890-0.629005.787404.62820HepG2EIF4G2
VTI1AENSG00000151532.91040.52700690.887700.590704.134503.20950HepG2FIP1L1
VTI1AENSG00000151532.9785.57730601.929100.384102.242501.61760HepG2FXR1
VTI1AENSG00000151532.9516.75220669.93690-0.374602.295401.65910HepG2HNRNPC
VTI1AENSG00000151532.9634.13960806.54670-0.347003.114902.35690HepG2HNRNPF
VTI1AENSG00000151532.9619.74820767.80480-0.309102.903902.21610HepG2HNRNPL
VTI1AENSG00000151532.9415.75290672.58680-0.694005.714104.84270HepG2HNRNPLL
VTI1AENSG00000151532.9507.47910665.50730-0.391103.644202.95730HepG2HNRNPU
VTI1AENSG00000151532.9628.97010794.22040-0.336502.407001.72990HepG2IGF2BP1
VTI1AENSG00000151532.9398.80500593.57860-0.573805.787804.75390HepG2PPIL4
VTI1AENSG00000151532.9751.37850519.038500.533605.720104.99090HepG2PTBP1
VTI1AENSG00000151532.9266.68200797.84740-1.5810030.0177028.33360HepG2PUF60
VTI1AENSG00000151532.91056.62360846.949700.319003.904403.22610HepG2PUM1
VTI1AENSG00000151532.9710.13050562.189100.336902.252501.67880HepG2QKI
VTI1AENSG00000151532.9967.04760628.619900.621303.172702.42170HepG2RAVER1
VTI1AENSG00000151532.9835.87430577.662500.533005.877205.13630HepG2NELFE
VTI1AENSG00000151532.9526.04360395.366300.411902.641102.03900HepG2RPS19
VTI1AENSG00000151532.9373.58040592.66100-0.665808.227407.20520HepG2SAFB2
VTI1AENSG00000151532.9681.94650540.434500.335402.456901.89500HepG2SF3B4
VTI1AENSG00000151532.9545.54510765.01030-0.487805.894404.93270HepG2SLBP
VTI1AENSG00000151532.9836.79020564.076900.568906.955706.28870HepG2SRSF1
VTI1AENSG00000151532.9565.67360787.75750-0.477805.243204.42400HepG2SRSF5
VTI1AENSG00000151532.9582.56010792.39780-0.443804.599003.73550HepG2SRSF7
VTI1AENSG00000151532.9497.65130655.47270-0.397402.380501.70090HepG2TARDBP
VTI1AENSG00000151532.9468.74790646.64720-0.464203.862903.29320HepG2TIAL1
VTI1AENSG00000151532.9511.07040652.44660-0.352303.078102.49060HepG2TRIM56
VTI1AENSG00000151532.9766.54050590.982700.375102.103001.54700HepG2U2AF1
VTI1AENSG00000151532.9909.09770671.302900.437403.705503.02820HepG2UTP3
VTI1AENSG00000151532.9497.55730729.42900-0.551904.286703.58690K562AQR
VTI1AENSG00000151532.9289.48670422.70040-0.546103.706002.79970K562CPSF6
VTI1AENSG00000151532.9213.78310317.45400-0.570403.350402.17060K562CSTF2
VTI1AENSG00000151532.9694.083701055.26230-0.604406.871005.35580K562CELF1
VTI1AENSG00000151532.9753.27410616.121800.289902.287101.68580K562DDX47
VTI1AENSG00000151532.9245.27620342.00150-0.479602.356601.51590K562EFTUD2
VTI1AENSG00000151532.9262.42340364.56220-0.474302.400201.55330K562FTO
VTI1AENSG00000151532.9421.71580291.377500.533303.905203.20470K562FXR1
VTI1AENSG00000151532.9270.42720403.56700-0.577603.649502.74270K562GPKOW
VTI1AENSG00000151532.9524.11300684.91960-0.386102.504301.78260K562GRSF1
VTI1AENSG00000151532.9222.54450344.61640-0.630902.885201.92770K562KRR1
VTI1AENSG00000151532.9274.07610393.92970-0.523403.165402.22550K562METAP2
VTI1AENSG00000151532.9409.20770515.42230-0.332902.438901.73410K562NSUN2
VTI1AENSG00000151532.9211.71370300.00520-0.502902.248701.44130K562PSIP1
VTI1AENSG00000151532.9523.90560396.695600.401202.734302.07350K562PTBP1
VTI1AENSG00000151532.9734.32390936.54320-0.350902.318601.57130K562PUF60
VTI1AENSG00000151532.9751.97100976.04560-0.376303.212102.17840K562PUM2
VTI1AENSG00000151532.9647.42120490.075500.401602.317601.81150K562PUS1
VTI1AENSG00000151532.9166.30200244.28260-0.554702.406301.43460K562SRSF4
VTI1AENSG00000151532.9273.22240367.31200-0.426902.256401.32680K562SRSF5
VTI1AENSG00000151532.9294.53430400.40970-0.443002.980401.76300K562SRSF7
VTI1AENSG00000151532.9288.67050393.57570-0.447202.387201.72750K562TARDBP
VTI1AENSG00000151532.9235.89440341.03070-0.531802.735801.72320K562UCHL5
VTI1AENSG00000151532.9433.43070546.51280-0.334502.416001.74280K562UPF1
VTI1AENSG00000151532.9544.83580821.74370-0.592905.881404.54970K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VTI1A is not available on ENCORE database.





3 RBPs can affect the splicing of VTI1A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVTI1AENSG00000151532.9chr10+114208139114208247114206755114207225114208639114210484-0.274000.002220.05098excludedHepG2HNRNPK
SEVTI1AENSG00000151532.9chr10+1142081391142082471142067551142072251142086391142104840.415000.000030.00221includedK562FXR1
SEVTI1AENSG00000151532.9chr10+114208139114208247114206755114207225114208639114210484-0.100000.001940.02924excludedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VTI1A is not avaliable on ENCORE database.