EIF3D

General Information

Gene Name       : EIF3D
Gene ID             : ENSG00000100353.17
Essential Gene : Yes

Functions

Localization(RBPImage: EIF3D)

Domains (AlphaFold: EIF3D)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878EIF3DENSG00000100353.17308.02341.46324.74ENCSR000AEF
HepG2EIF3DENSG00000100353.17154.73124.44139.58ENCSR985KAT
K562EIF3DENSG00000100353.17266.10267.40266.75ENCSR000AEO

Assays

4 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 625ENCSR041NUVEIF3DHepG2ReleasedENCAB626JLZENCSR755PSW  
knockdown followed by RNA-seq EIF3D-BGKLV19-K562ENCSR660ETTEIF3DK562ReleasedENCSR661HEL   shRNAKD% = 83.5,83.2
knockdown followed by RNA-seq EIF3D-BGHLV16-HepG2ENCSR788HVKEIF3DHepG2ReleasedENCSR689PHN   shRNAKD% = 72.3,68.9
RNA Bind-n-SeqRBNS: EIF3DENCSR488AUUEIF3Dcell-free sampleReleasedENCSR790NTP  






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
EIF3D625HepG2ENCSR041NUVENCSR755PSWENCAB626JLZA301-758A1ReleasedENCODE3


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
EIF3DENCAB626JLZA301-758A1Released, ENCODE3BGHLV16-23, Released, ENCODE3BGKLV19-25, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
EIF3DK562shRNAENCSR660ETTENCSR661HELEIF3D_BGKLV19_25B,EIF3D_BGKLV19_26BNT_BGKLV19_1B,NT_BGKLV19_2B83.5,83.2ReleasedENCODE3
EIF3DHepG2shRNAENCSR788HVKENCSR689PHNEIF3D_BGHLV16_23,EIF3D_BGHLV16_24NT_BGHLV16_1,NT_BGHLV16_272.3,68.9ReleasedENCODE3


  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
EIF3DEIF3DReleasedENCODE4


  Localization Image in HepG2  
    EIF3D: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Speckles
  • Cajal bodies
  • Cytoplasm
  • Cytosolic












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    EIF3DProduct_ID: A301-758A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: EIF3D-human    		 HepG2_Bethyl_A301-758A_1_EIF3D.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using EIF3D specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-EIF3D antibody (lanes under 'EIF3D').
    		 EIF3D_Secondary_Western.png<br>Caption: Western blot following shRNA against EIF3D in K562 and HepG2 whole cell lysate using EIF3D specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 2 and 3 are two different shRNAs against EIF3D. Lanes 5-7 follow the same pattern, but in HepG2. EIF3D protein appears as the green band, GAPDH serves as a control and appears in red.
    		 EIF3D_Secondary_Western.png<br>Caption: Western blot following shRNA against EIF3D in K562 and HepG2 whole cell lysate using EIF3D specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 2 and 3 are two different shRNAs against EIF3D. Lanes 5-7 follow the same pattern, but in HepG2. EIF3D protein appears as the green band, GAPDH serves as a control and appears in red.








    RNA Targets
    • EIF3D protein binds to 782 RNA regions.  




    • The binding motifs of EIF3D

      • Trulli

    Proteins bound to RNA
    • EIF3D RNA is bound by 36 proteins.  






    EIF3D protein has 782 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 782 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    EIF3Dchr25419786054197941-3.5558516.51877HepG2PSME45'-UTR,CDS,intron-Distal,intron-Proximal
    EIF3Dchr15559521355595246-3.372563.99278HepG2USP24CDS,intron-Distal
    EIF3Dchr23280022532800275+3.169467.57620HepG2BIRC6CDS
    EIF3Dchr1146767377146767412+3.328273.72682HepG2CHD1L3'-UTR
    EIF3Dchr2172016565172016614-3.918553.68544HepG2TLK1intron-Distal
    EIF3Dchr177521135375211435+4.106187.63632HepG2SEC14L13'-UTR,intron-Distal
    EIF3Dchr2191878250191878329-3.351923.06445HepG2STAT13'-UTR,5'-UTR,intron-Distal,intron-Proximal
    EIF3Dchr3184045661184045773+3.287047.28138HepG2EIF4G1, EIF2B53'-UTR,CDS,intron-Distal
    EIF3Dchr26157597661576021-3.106184.28378HepG2USP343'-UTR,CDS,intron-Distal
    EIF3Dchr6144820431144820479+4.130308.90928HepG2UTRNCDS
    EIF3Dchr23283662532836643+3.128194.99021HepG2BIRC6CDS
    EIF3Dchr224897749148977542+4.196753.70840HepG2FAM19A5intron-Distal
    EIF3Dchr2242753443242753504+3.410023.72682HepG2NEU4intron-Distal
    EIF3Dchr896282529628338+5.008214.99405HepG2TNKSintron-Distal
    EIF3Dchr159153763691537723-3.548303.51824HepG2PRC15'-UTR,CDS,intron-Distal
    EIF3Dchr27165082771650885+3.381553.23234HepG2ZNF638CDS,intron-Distal
    EIF3Dchr6166755914166755969-3.538197.09462HepG2SFT2D1CDS,intron-Distal
    EIF3Dchr206232465262324685+4.278503.70840HepG2RTEL1-TNFRSF6B, RTEL1intron-Proximal
    EIF3Dchr9116997919116997932+3.3933213.11757HepG2COL27A15'-UTR,CDS
    EIF3Dchr101967665019676687+3.760245.02357HepG2C10orf112CDS
    EIF3Dchr3194829899194830011-4.325865.19501HepG2XXYLT1intron-Distal
    EIF3Dchr9117072954117072981+3.775607.15920HepG2COL27A13'-UTR,CDS
    EIF3Dchr187767523677675297-3.252273.48423HepG2PQLC1intron-Distal
    EIF3Dchr10134177869134177982+4.464288.83217HepG2LRRC27intron-Distal
    EIF3Dchr84876971648769747-3.385765.22940HepG2PRKDCCDS,intron-Distal,intron-Proximal
    EIF3Dchr6160489283160489316+4.620755.94731HepG2IGF2RCDS
    EIF3Dchr142183656321836596-4.225043.70840HepG2SUPT16HCDS,intron-Distal
    EIF3Dchr11947505719475091-3.147788.22491HepG2UBR4CDS,intron-Distal
    EIF3Dchr161883094518830973-3.464783.97300HepG2SMG1CDS,intron-Distal
    EIF3Dchr13990838839908458+4.215277.63632HepG2MACF1CDS
    EIF3Dchr12112676963112677041-3.943576.58814HepG2HECTD4CDS,intron-Distal,intron-Proximal
    EIF3Dchr47917647179176520+4.314923.45420HepG2FRAS1CDS
    EIF3Dchr177795716577957222-3.998793.45420HepG2TBC1D16intron-Distal
    EIF3Dchr116248973762489789-3.284775.60427HepG2HNRNPUL2-BSCL2, HNRNPUL2CDS,intron-Distal
    EIF3Dchr26144976461449784-3.374823.48423HepG2USP34CDS,intron-Distal,intron-Proximal
    EIF3Dchr2201171176201171262+3.091306.17206HepG2SPATS2L5'-UTR,intron-Distal,intron-Proximal
    EIF3Dchr214686229546862353+3.325863.74400HepG2COL18A1intron-Distal
    EIF3Dchr11946785219467898-3.291276.65206HepG2UBR4CDS,intron-Distal
    EIF3Dchr7158152398158152434-3.037393.41015HepG2PTPRN2intron-Distal
    EIF3Dchr161882085218820931-3.201786.65206HepG2SMG13'-UTR,CDS,intron-Distal
    EIF3Dchr9137253525137253622+3.813083.97300HepG2RXRAintron-Distal
    EIF3Dchr3184033177184033254+3.021214.22494HepG2EIF4G1, EIF2B55'-UTR,intron-Distal,intron-Proximal
    EIF3Dchr165062077750620799+3.064083.64782HepG2NKD1intron-Distal
    EIF3Dchr1914702441470348-3.136603.06445HepG2C19orf25intron-Distal
    EIF3Dchr5133968414133968493-3.136603.06445HepG2SAR1B5'-UTR,intron-Distal,intron-Proximal
    EIF3DchrX7059874770598808+3.033983.23234HepG2TAF1CDS
    EIF3Dchr206062722860627280-3.227813.24137HepG2TAF4intron-Distal
    EIF3Dchr14390735643907443+3.252273.24137HepG2SZT2CDS,intron-Proximal
    EIF3Dchr122016952201753+3.661274.70634HepG2SKIintron-Distal
    EIF3Dchr8100182362100182391+3.236053.51824HepG2VPS13BCDS
    EIF3Dchr12217538922175412-3.202503.72682HepG2HSPG23'-UTR,CDS,intron-Distal
    EIF3Dchr152842428628424312-3.994983.94633HepG2HERC2CDS,intron-Distal,intron-Proximal
    EIF3Dchr4151837580151837668-3.315336.35066HepG2LRBACDS,intron-Distal
    EIF3Dchr1621498652149919-4.655945.43654HepG2PKD13'-UTR,CDS,intron-Distal,intron-Proximal
    EIF3Dchr176585012765850177+3.268123.72682HepG2BPTFCDS
    EIF3Dchr9137255266137255310+3.278503.06445HepG2RXRAintron-Distal
    EIF3Dchr69048436490484397-3.325864.21853HepG2MDN1CDS,intron-Distal
    EIF3Dchr11949086219490921-3.159908.41229HepG2UBR4CDS,intron-Distal
    EIF3Dchr206268534862685398+3.897023.16533HepG2TCEA2intron-Distal
    EIF3Dchr14105250948105250995-4.099604.20767HepG2AKT1intron-Distal
    EIF3Dchr224897731048977418+4.785556.63770HepG2FAM19A5intron-Distal
    EIF3Dchr213851288638512931+3.083844.37422HepG2TTC3CDS
    EIF3Dchr77302309573023127-3.266813.23234HepG2MLXIPLintron-Distal
    EIF3Dchr173563485035634897-3.006344.61844HepG2ACACA3'-UTR,CDS,intron-Distal,intron-Proximal
    EIF3Dchr12112654710112654726-3.910023.42508HepG2HECTD4CDS,intron-Distal,intron-Proximal
    EIF3Dchr5139908143139908201+3.736055.89977HepG2ANKHD1, ANKHD1-EIF4EBP3CDS
    EIF3Dchr171421279214212869+3.758255.89977HepG2HS3ST3B1intron-Distal
    EIF3Dchr57698716076987234-4.019373.68544HepG2TBCA3'-UTR,intron-Distal,intron-Proximal
    EIF3Dchr214685855346858602+4.475644.46029HepG2COL18A1intron-Distal
    EIF3Dchr99192617991926232+3.160405.58961HepG2CKS25'-UTR,CDS
    EIF3Dchr125760534757605370+3.551646.63666HepG2LRP1CDS
    EIF3Dchr161847925418479296-3.493074.21853HepG2RP11-1212A22.1, PKD1P5intron-Distal
    EIF3Dchr21030120510301257+3.088094.83980HepG2C2orf48intron-Distal
    EIF3Dchr63185537431855431-3.205353.51824HepG2EHMT2CDS,intron-Distal
    EIF3Dchr204595035845950394-3.798823.19863HepG2ZMYND8intron-Distal
    EIF3Dchr177826202178262119+3.074794.13113HepG2RNF213CDS
    EIF3Dchr34845341348453417-3.095886.41174HepG2PLXNB1CDS,intron-Distal,intron-Proximal
    EIF3Dchr13565642235656546-4.1525013.58895HepG2SFPQCDS,intron-Distal
    EIF3Dchr64171501141715113-4.760245.19501HepG2PGC5'-UTR,CDS,intron-Distal
    EIF3Dchr12123997761123997847-4.4111619.34309HepG2RILPL1intron-Distal
    EIF3Dchr214537194345372080+3.060603.24137HepG2AGPAT3intron-Distal
    EIF3Dchr191751632117516381-3.998793.70840HepG2BST2CDS,intron-Distal,intron-Proximal
    EIF3Dchr11949452719494531-3.439463.48423HepG2UBR4CDS,intron-Distal
    EIF3Dchr2209119737209119794-4.4170313.83915HepG2IDH13'-UTR,5'-UTR,intron-Distal,intron-Proximal
    EIF3Dchr213850770238507782+3.064945.69477HepG2TTC3CDS
    EIF3Dchr14391323143913315+3.167303.06445HepG2SZT2CDS
    EIF3Dchr11799717317997208+3.798823.19863HepG2ARHGEF10Lintron-Distal
    EIF3Dchr203106057431060637-3.342034.75010HepG2C20orf112intron-Distal
    EIF3Dchr152843612328436173-4.494985.43654HepG2HERC2CDS,intron-Distal
    EIF3Dchr116395367663953743+4.204288.11283HepG2STIP15'-UTR,CDS,intron-Distal,intron-Proximal
    EIF3Dchr1621524962152533-3.837823.42508HepG2PKD15'-UTR,CDS,intron-Distal
    EIF3Dchr1914085651408607+3.479555.93950HepG2DAZAP1intron-Distal
    EIF3Dchr62710048027100539-3.397893.73372HepG2HIST1H2BJ5'-UTR,CDS,intron-Distal,intron-Proximal
    EIF3Dchr3197243430197243546-4.952234.20767HepG2BDH1intron-Distal
    EIF3Dchr412174001217461-3.171803.29171HepG2CTBP1intron-Distal
    EIF3Dchr6144780474144780490+3.130779.37940HepG2UTRNCDS
    EIF3Dchr57569916975699218+3.410024.50634HepG2IQGAP25'-UTR
    EIF3Dchr11951303419513069-3.148275.69477HepG2UBR4CDS,intron-Distal
    EIF3Dchr203105013831050238-3.028543.87130HepG2C20orf112intron-Distal
    EIF3Dchr214683510946835181+3.074793.42388HepG2COL18A1intron-Distal




    36 proteins are bound to EIF3D RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr223690693636907031-3'-UTR,intron-Distal,intron-Proximal3.7206715.20521K562GRWD1
    chr223690697036907042-3'-UTR,CDS,intron-Distal3.5274510.99617K562LIN28B
    chr223691994136920002-3'-UTR,CDS,intron-Distal,intron-Proximal3.978648.14338K562ZNF800
    chr223690852336908584-3'-UTR,CDS,intron-Distal4.023314.78507K562FXR2
    chr223690697936907036-3'-UTR,intron-Distal4.7886338.35138HepG2SUB1
    chr223691994136919986-3'-UTR,CDS,intron-Distal,intron-Proximal4.062967.10432HepG2G3BP1
    chr223690693636906979-3'-UTR,intron-Distal,intron-Proximal5.9953937.87084HepG2SUB1
    chr223690696436907023-3'-UTR,intron-Distal3.064514.16775K562TRA2A
    chr223690697136907028-3'-UTR,intron-Distal3.570345.07480K562PUM1
    chr223690693136907046-3'-UTR,CDS,intron-Distal,intron-Proximal3.806559.80079HepG2GRWD1
    chr223690692836907029-3'-UTR,intron-Distal,intron-Proximal3.325315.67601HepG2HLTF
    chr223691994736919985-3'-UTR,CDS,intron-Distal,intron-Proximal3.054889.72347K562ZNF622
    chr223690692836907029-3'-UTR,intron-Distal,intron-Proximal3.6368527.91628K562PABPC4
    chr223690694236907017-3'-UTR,intron-Distal,intron-Proximal3.927927.00115HepG2G3BP1
    chr223690775036907759-3'-UTR,CDS,intron-Distal,intron-Proximal3.105186.45750K562YBX3
    chr223691994736919975-3'-UTR,CDS,intron-Distal,intron-Proximal4.844365.70640HepG2BCLAF1
    chr223691994636920004-3'-UTR,CDS,intron-Distal,intron-Proximal3.1924312.64180K562UCHL5
    chr223690859436908634-3'-UTR,CDS,intron-Distal3.870445.16549HepG2SUB1
    chr223690850436908536-3'-UTR,CDS,intron-Distal,intron-Proximal4.385874.24959K562SND1
    chr223690851736908566-3'-UTR,CDS,intron-Distal3.359803.80299HepG2GRWD1
    chr223690693136907047-3'-UTR,CDS,intron-Distal,intron-Proximal4.4140644.65316K562UCHL5
    chr223690858436908635-3'-UTR,CDS,intron-Distal3.607305.59924K562GRWD1
    chr223690697736907039-3'-UTR,CDS,intron-Distal3.408067.51172HepG2PPIG
    chr223690695736907048-3'-UTR,CDS,intron-Distal4.786814.72184HepG2TRA2A
    chr223690694936907048-3'-UTR,CDS,intron-Distal3.005627.22481K562SRSF1
    chr223690696436907048-3'-UTR,CDS,intron-Distal3.589517.84297K562ZNF800
    chr223690695236907047-3'-UTR,CDS,intron-Distal3.5131535.15277K562ZNF622
    chr223691279936912828-5'-UTR,CDS,intron-Distal3.9013710.21122K562LIN28B
    chr223692512636925218-5'-UTR,intron-Distal,intron-Proximal3.264266.34269K562GEMIN5
    chr223691252336912568-5'-UTR,CDS,intron-Distal,intron-Proximal4.099995.65736K562METAP2
    chr223691248736912545-5'-UTR,CDS,intron-Distal,intron-Proximal3.815224.83899HepG2PRPF8
    chr223691336236913423-5'-UTR,CDS,intron-Distal4.544888.80061K562IGF2BP2
    chr223691334836913401-5'-UTR,CDS,intron-Distal3.243495.60102K562GRWD1
    chr223691253836912624-5'-UTR,CDS,intron-Distal3.4527310.21811HepG2GRWD1
    chr223692512136925131-5'-UTR,intron-Distal,intron-Proximal3.692995.97131K562DDX3X
    chr223691275236912768-5'-UTR,CDS,intron-Distal,intron-Proximal3.013064.49816K562UCHL5
    chr223691252936912571-5'-UTR,CDS,intron-Distal3.0560210.31885K562YBX3
    chr223691342436913479-5'-UTR,CDS,intron-Distal,intron-Proximal3.535473.24162HepG2G3BP1
    chr223691257036912645-5'-UTR,CDS,intron-Distal3.321466.44513K562METAP2
    chr223691334736913426-5'-UTR,CDS,intron-Distal,intron-Proximal3.745888.04296K562RPS3
    chr223691336036913460-5'-UTR,CDS,intron-Distal4.049093.06406HepG2IGF2BP1
    chr223692515236925217-5'-UTR,intron-Distal,intron-Proximal3.033957.87170K562DDX3X
    chr223692507336925122-5'-UTR,intron-Distal,intron-Proximal4.628629.04436K562AQR
    chr223692513836925198-5'-UTR,intron-Distal,intron-Proximal3.095533.60836K562METAP2
    chr223692503736925094-5'-UTR,intron-Distal,intron-Proximal4.902455.83705HepG2RBM22
    chr223691252436912599-5'-UTR,CDS,intron-Distal,intron-Proximal3.181925.97026K562PUM1
    chr223691257636912656-5'-UTR,CDS,intron-Distal,intron-Proximal3.9400317.92720K562RPS3
    chr223692507036925164-5'-UTR,intron-Distal,intron-Proximal3.1849811.45942HepG2PRPF8
    chr223691271336912781-5'-UTR,CDS,intron-Distal,intron-Proximal4.565465.93840HepG2PRPF8
    chr223691337636913424-5'-UTR,CDS,intron-Distal4.337634.54659HepG2G3BP1
    chr223691252536912538-5'-UTR,CDS,intron-Distal4.130084.72880HepG2GRWD1
    chr223691335036913394-5'-UTR,CDS,intron-Distal3.091034.24648K562METAP2
    chr223691276936912803-5'-UTR,CDS,intron-Distal4.217334.67436K562GRWD1
    chr223691271536912769-5'-UTR,CDS,intron-Distal,intron-Proximal3.234654.65130K562PRPF8
    chr223691278236912799-5'-UTR,CDS,intron-Distal4.082667.48534K562LIN28B
    chr223690754836907632-CDS,intron-Distal,intron-Proximal3.7209421.10519K562UCHL5
    chr223691670736916788-CDS,intron-Distal,intron-Proximal3.861686.26686K562SF3B4
    chr223692210036922167-CDS,intron-Distal3.506537.44851HepG2GRWD1
    chr223691664436916734-CDS,intron-Distal,intron-Proximal3.5786410.53348K562GRWD1
    chr223692166836921759-CDS,intron-Distal,intron-Proximal4.009586.40042K562EFTUD2
    chr223691662936916729-CDS,intron-Distal,intron-Proximal3.875816.41974HepG2PPIG
    chr223692068136920756-CDS,intron-Distal,intron-Proximal3.670715.79114K562LIN28B
    chr223692212436922168-CDS,intron-Distal4.324565.07334K562GRWD1
    chr223691492336914936-CDS,intron-Distal3.2967513.69754K562YBX3
    chr223690758536907690-CDS,intron-Distal,intron-Proximal3.7242815.85474K562RPS3
    chr223691352736913574-CDS,intron-Distal,intron-Proximal4.992115.65342K562AQR
    chr223691350336913557-CDS,intron-Distal,intron-Proximal3.936384.21358HepG2U2AF2
    chr223691545936915559-CDS,intron-Distal,intron-Proximal3.853485.14242HepG2G3BP1
    chr223692207736922154-CDS,intron-Distal3.068295.37802K562FMR1
    chr223692212936922149-CDS,intron-Distal3.1111212.83342K562YBX3
    chr223692204436922099-CDS,intron-Distal,intron-Proximal3.083535.60602HepG2GRWD1
    chr223691489836914923-CDS,intron-Distal3.2586512.30222K562YBX3
    chr223692170736921767-CDS,intron-Distal,intron-Proximal4.089945.16342K562SF3B4
    chr223691669636916755-CDS,intron-Distal,intron-Proximal3.443474.50819HepG2AQR
    chr223691553336915547-CDS,intron-Distal4.6992611.98555K562LIN28B
    chr223691551036915533-CDS,intron-Distal4.1616915.94445K562LIN28B
    chr223692208536922129-CDS,intron-Distal3.6037514.16962K562YBX3
    chr223691488036914898-CDS,intron-Distal3.6830514.29870K562YBX3
    chr223690754836907586-CDS,intron-Distal,intron-Proximal3.4383019.39032K562ZNF622
    chr223691483036914880-CDS,intron-Distal,intron-Proximal3.4210114.33027K562YBX3
    chr223692172436921774-CDS,intron-Distal,intron-Proximal3.783423.85376K562GPKOW
    chr223692066436920729-CDS,intron-Distal,intron-Proximal3.144634.29277HepG2GRWD1
    chr223691668836916734-CDS,intron-Distal3.058763.71087K562METAP2
    chr223691545036915501-CDS,intron-Distal,intron-Proximal3.709016.02304HepG2GRWD1
    chr223691548736915510-CDS,intron-Distal3.594699.70484K562LIN28B
    chr223690754836907623-CDS,intron-Distal,intron-Proximal3.3243311.35234K562SRSF1
    chr223691662836916644-CDS,intron-Distal,intron-Proximal4.032083.02919K562GRWD1
    chr223692171636921770-CDS,intron-Distal,intron-Proximal3.2403910.02242K562BUD13
    chr223691998636920028-CDS,intron-Distal,intron-Proximal4.785287.12026HepG2G3BP1
    chr223692173036921790-CDS,intron-Distal,intron-Proximal5.2035613.79863K562AQR
    chr223691662736916688-CDS,intron-Distal,intron-Proximal4.957786.37937HepG2BCLAF1
    chr223690755036907625-CDS,intron-Distal,intron-Proximal3.5429311.08187HepG2GRWD1
    chr223692064236920690-CDS,intron-Distal,intron-Proximal4.485005.23727HepG2G3BP1
    chr223691493136915001-CDS,intron-Distal,intron-Proximal3.997436.80869K562AQR
    chr223692205336922087-CDS,intron-Distal3.512874.09885HepG2BCLAF1
    chr223690754836907628-CDS,intron-Distal,intron-Proximal3.880017.59990HepG2TRA2A
    chr223691917136919213-CDS,intron-Distal,intron-Proximal4.627144.58968K562PRPF8
    chr223692068636920725-CDS,intron-Distal,intron-Proximal3.244674.35885HepG2SUB1
    chr223690760836907620-CDS,intron-Distal,intron-Proximal3.008855.82330K562YBX3
    chr223691911036919206-CDS,intron-Distal,intron-Proximal3.983347.47754K562EFTUD2
    chr223692173436921756-CDS,intron-Distal3.673683.32039HepG2PPIG
    chr223691476036914813-CDS,intron-Distal,intron-Proximal4.325888.77485HepG2PRPF8
    chr223692171336921770-CDS,intron-Distal,intron-Proximal5.328398.92257HepG2U2AF2
    chr223691233036912368-intron-Distal4.324934.22101K562PRPF8
    chr223691540536915452-intron-Distal,intron-Proximal5.2860913.79863K562AQR
    chr223691199936912080-intron-Distal,intron-Proximal4.183804.51299HepG2SUGP2
    chr223691019236910268-intron-Distal4.310644.10192HepG2HNRNPK
    chr223692176736921812-intron-Distal,intron-Proximal4.465973.42835K562SF3B4
    chr223692203836922046-intron-Distal,intron-Proximal5.7144113.79863K562AQR
    chr223691231336912473-intron-Distal,intron-Proximal3.214373.51696K562KHSRP
    chr223691476536914810-intron-Distal,intron-Proximal5.208596.44303K562AQR
    chr223692060036920642-intron-Distal,intron-Proximal4.035844.52312K562AQR
    chr223692198836922041-intron-Distal,intron-Proximal3.151534.07440K562PRPF8
    chr223691539736915405-intron-Distal,intron-Proximal3.473853.52230K562AQR
    chr223692196236922016-intron-Distal,intron-Proximal4.657074.44893K562RBM22
    chr223691977036919806-intron-Distal3.580594.23459K562PRPF8
    chr223690885936908923-intron-Distal3.796225.27598K562TARDBP
    chr223692200036922038-intron-Distal,intron-Proximal6.8731116.94863K562AQR
    chr223691974036919780-intron-Distal4.480814.11693K562BUD13
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein EIF3D and its RNA.



    Diffrential Expression
    • 6,597 differentially expressed genes after Knockdown/Knockout EIF3D protein.  





    • 94 RBPs can affect the levels of EIF3D.  







    6,597 differentially expressed genes after Knockdown/Knockout EIF3D protein :

    Only display 100 entries as example. Please click "View All" button to see all 6,597 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    SCYL3ENSG00000000457.9172.1518098.086800.811503.244602.27190HepG2EIF3D
    C1orf112ENSG00000000460.1297.78800228.29140-1.223107.132305.74270HepG2EIF3D
    GCLCENSG00000001084.61613.56980880.763600.8733012.4093010.64820HepG2EIF3D
    NFYAENSG00000001167.101033.62890711.126600.539404.644003.49560HepG2EIF3D
    SEMA3FENSG00000001617.7213.90420331.78890-0.633303.613602.58810HepG2EIF3D
    ANKIB1ENSG00000001629.51182.26100777.442300.604605.921704.63260HepG2EIF3D
    CYP51A1ENSG00000001630.111970.538402584.05160-0.391002.415101.56550HepG2EIF3D
    CD99ENSG00000002586.131380.761401740.77640-0.334302.200201.38450HepG2EIF3D
    LASP1ENSG00000002834.136226.113104739.937600.393403.699202.66220HepG2EIF3D
    SNX11ENSG00000002919.10243.79390130.699000.899304.785703.62150HepG2EIF3D
    M6PRENSG00000003056.3844.721201492.76900-0.821409.979208.36970HepG2EIF3D
    DBNDD1ENSG00000003249.9945.59000629.521900.586904.642103.49400HepG2EIF3D
    SLC7A2ENSG00000003989.123107.682404472.97020-0.525403.140802.18360HepG2EIF3D
    CAMKK1ENSG00000004660.1019.3271049.17410-1.347302.175801.36470HepG2EIF3D
    ARHGAP33ENSG00000004777.1477.12030221.10730-1.5196011.534109.83080HepG2EIF3D
    DVL2ENSG00000004975.7460.37650630.13580-0.452802.900701.97830HepG2EIF3D
    SKAP2ENSG00000005020.8595.79660376.331000.662704.750303.58980HepG2EIF3D
    SLC25A5ENSG00000005022.51688.577202865.87600-0.7632011.336909.64790HepG2EIF3D
    DHX33ENSG00000005100.81173.73090886.492600.404803.064502.11760HepG2EIF3D
    AC004381.6ENSG00000005189.1580.79170202.69260-1.327007.883506.43260HepG2EIF3D
    CREBBPENSG00000005339.82063.222001337.437000.625306.136504.82750HepG2EIF3D
    WDR54ENSG00000005448.1266.21030176.32090-1.413104.582303.44080HepG2EIF3D
    CROTENSG00000005469.7184.26920113.136900.703602.828801.91670HepG2EIF3D
    ABCB4ENSG00000005471.11461.90510624.06580-0.434102.175501.36460HepG2EIF3D
    IBTKENSG00000005700.102398.682401571.202100.610307.377605.96290HepG2EIF3D
    ZNF195ENSG00000005801.12518.49670310.594900.739205.582904.32940HepG2EIF3D
    MYCBP2ENSG00000005810.131179.31910868.515600.441203.663202.63160HepG2EIF3D
    ITGALENSG00000005844.1321.3395057.28460-1.424603.094602.14300HepG2EIF3D
    PDK2ENSG00000005882.7230.97290386.01560-0.740902.673401.78380HepG2EIF3D
    ITGA3ENSG00000005884.13162.5881054.920201.565705.932004.64220HepG2EIF3D
    GGNBP2ENSG00000005955.81160.05580873.943400.408503.087602.13730HepG2EIF3D
    ITGA2BENSG00000005961.1310.5858039.54620-1.901402.960202.02970HepG2EIF3D
    ASB4ENSG00000005981.8139.9572069.282501.014302.104001.30760HepG2EIF3D
    GDE1ENSG00000006007.71621.031301185.601100.451204.057402.97690HepG2EIF3D
    TMEM98ENSG00000006042.7765.029701011.71840-0.403202.531401.66250HepG2EIF3D
    TNFRSF12AENSG00000006327.9706.95590284.888201.3111012.2963010.54170HepG2EIF3D
    BAIAP2L1ENSG00000006453.9957.99120552.475600.794008.171006.69260HepG2EIF3D
    JHDM1DENSG00000006459.61273.583501801.46000-0.500302.812301.90300HepG2EIF3D
    AGKENSG00000006530.11273.33910427.70460-0.645903.943902.87400HepG2EIF3D
    ELAC2ENSG00000006744.14789.67290552.157400.516103.709702.67140HepG2EIF3D
    ARSDENSG00000006756.11280.66750164.675300.769103.747302.70470HepG2EIF3D
    ADIPOR2ENSG00000006831.91704.116402175.47200-0.352302.356401.51580HepG2EIF3D
    MARK4ENSG00000007047.10387.09280576.14200-0.573703.908402.84380HepG2EIF3D
    PAFAH1B1ENSG00000007168.81467.708601168.703900.328602.451801.59560HepG2EIF3D
    KIAA0100ENSG00000007202.102872.273902251.074600.351502.850801.93580HepG2EIF3D
    PAX6ENSG00000007372.1679.5959027.457201.535404.140303.04990HepG2EIF3D
    LUC7LENSG00000007392.12529.54300918.71840-0.794908.124206.65030HepG2EIF3D
    BAIAP3ENSG00000007516.953.68460103.41800-0.945903.183202.22040HepG2EIF3D
    MYLIPENSG00000007944.10190.6190090.487901.074805.198503.98910HepG2EIF3D
    E2F2ENSG00000007968.686.64920156.30910-0.851103.301202.32010HepG2EIF3D
    JARID2ENSG00000008083.9924.19830666.567400.471403.482002.47500HepG2EIF3D
    SYPL1ENSG00000008282.3996.68020754.520400.401502.630701.74650HepG2EIF3D
    AASSENSG00000008311.10280.86140454.15590-0.693304.295903.18650HepG2EIF3D
    PLEKHG6ENSG00000008323.1180.94810219.60120-1.439809.149007.60270HepG2EIF3D
    ST3GAL1ENSG00000008513.10762.771201128.21420-0.564704.640703.49310HepG2EIF3D
    IL32ENSG00000008517.122499.838001405.003300.8312012.2210010.47170HepG2EIF3D
    HEATR5BENSG00000008869.7714.15670499.431100.515903.645502.61550HepG2EIF3D
    UBE3CENSG00000009335.131394.38740846.963500.719208.240106.75550HepG2EIF3D
    MLXIPLENSG00000009950.111111.398302063.78390-0.892905.439104.20270HepG2EIF3D
    SPRTNENSG00000010072.11183.2963091.493801.002303.505602.49480HepG2EIF3D
    METTL13ENSG00000010165.15423.01060306.445900.465002.451901.59560HepG2EIF3D
    UQCRC1ENSG00000010256.61486.651102141.41010-0.526505.284004.06320HepG2EIF3D
    NCAPD2ENSG00000010292.81359.711402821.69780-1.0533018.0057015.95000HepG2EIF3D
    SEMA3GENSG00000010319.2281.97050480.31150-0.768403.685502.65020HepG2EIF3D
    IDSENSG00000010404.13883.49110612.891900.527504.153003.06160HepG2EIF3D
    SCMH1ENSG00000010803.12542.931301004.33530-0.887409.573107.99090HepG2EIF3D
    FYNENSG00000010810.13939.54410689.864200.445503.320202.33560HepG2EIF3D
    TCEB3ENSG00000011007.8876.88100685.146900.355902.113101.31510HepG2EIF3D
    CLCN6ENSG00000011021.17966.327301236.13930-0.355302.483401.62250HepG2EIF3D
    TSPAN9ENSG00000011105.7503.02640739.52710-0.556004.113103.02500HepG2EIF3D
    SYT7ENSG00000011347.573.97290188.48940-1.349407.417305.99960HepG2EIF3D
    LARS2ENSG00000011376.5404.36690651.43210-0.687905.632704.37430HepG2EIF3D
    PLAURENSG00000011422.798.1123039.029001.329804.233803.13280HepG2EIF3D
    ANLNENSG00000011426.6777.419201975.65520-1.3456023.5197021.20190HepG2EIF3D
    CEP68ENSG00000011523.9313.17170433.51880-0.469102.106701.30970HepG2EIF3D
    BRCA1ENSG00000012048.15360.51230644.33330-0.837807.074405.68900HepG2EIF3D
    ELOVL5ENSG00000012660.92514.144301965.987700.354702.218301.40000HepG2EIF3D
    KDM5DENSG00000012817.111701.154401005.364100.758709.544507.96450HepG2EIF3D
    UBR7ENSG00000012963.9315.17820484.05710-0.619003.516702.50470HepG2EIF3D
    MAP4K5ENSG00000012983.7552.60800739.32830-0.420002.456301.59960HepG2EIF3D
    CLDN11ENSG00000013297.6208.51580137.888700.596602.193401.37930HepG2EIF3D
    SLC25A39ENSG00000013306.111138.899001527.49520-0.423503.562902.54400HepG2EIF3D
    MVPENSG00000013364.14977.22580548.002700.834408.681407.16700HepG2EIF3D
    CLK1ENSG00000013441.11729.488101078.48320-0.564004.516903.38320HepG2EIF3D
    ANGEL1ENSG00000013523.5306.61640460.65220-0.587203.350402.36030HepG2EIF3D
    HEBP1ENSG00000013583.4180.75420264.28530-0.548102.344601.50630HepG2EIF3D
    TACC3ENSG00000013810.14377.41030879.93360-1.221307.798906.35320HepG2EIF3D
    POLA2ENSG00000014138.4144.17310217.81090-0.595302.436001.58290HepG2EIF3D
    MATR3ENSG00000015479.134446.285805894.35350-0.406703.401202.40520HepG2EIF3D
    XYLT2ENSG00000015532.5362.05870555.27200-0.617004.273203.16650HepG2EIF3D
    CHDHENSG00000016391.61482.765301983.74290-0.419903.337502.35000HepG2EIF3D
    GLT8D1ENSG00000016864.12351.739201044.25110-1.5699027.9998025.48790HepG2EIF3D
    SRCIN1ENSG00000017373.11110.31950200.91940-0.864904.106103.01960HepG2EIF3D
    AGPSENSG00000018510.81613.897202061.37450-0.353102.449101.59350HepG2EIF3D
    ATP1A2ENSG00000018625.100.0000014.36230-99999.999994.679603.52750HepG2EIF3D
    PHLDB1ENSG00000019144.12579.50970396.428000.547703.336902.34950HepG2EIF3D
    CYP24A1ENSG00000019186.5991.09790367.538501.4310022.7222020.42720HepG2EIF3D
    CD74ENSG00000019582.102466.925601271.200900.9564015.2646013.34550HepG2EIF3D
    NCDNENSG00000020129.11270.88090159.429400.764603.531102.51720HepG2EIF3D
    SAMD4AENSG00000020577.91169.31260915.916400.352302.325401.49080HepG2EIF3D
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    94 RBPs can affect the gene expression of EIF3D :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    EIF3DENSG00000100353.132283.536703655.33190-0.678709.361607.78690HepG2ABCF1
    EIF3DENSG00000100353.133490.414102596.912000.4265010.542009.51520HepG2ACO1
    EIF3DENSG00000100353.131262.037901925.78360-0.609706.114104.83800HepG2BCLAF1
    EIF3DENSG00000100353.132271.176702737.90510-0.269602.668301.46100HepG2BUD13
    EIF3DENSG00000100353.132494.463602972.30400-0.252902.457801.72770HepG2CALR
    EIF3DENSG00000100353.132964.381104405.80210-0.571704.916303.60180HepG2CCAR1
    EIF3DENSG00000100353.132069.530302799.09440-0.435702.289401.59780HepG2CNOT7
    EIF3DENSG00000100353.133684.897803009.297900.292102.575401.50890HepG2CPSF7
    EIF3DENSG00000100353.134277.241103579.152600.257003.905703.16580HepG2CELF1
    EIF3DENSG00000100353.133190.014503847.92740-0.270504.321003.42820HepG2DAZAP1
    EIF3DENSG00000100353.131724.041802531.74740-0.554307.494306.43430HepG2DDX21
    EIF3DENSG00000100353.131747.670902477.31880-0.503307.212605.74620HepG2DDX24
    EIF3DENSG00000100353.132573.048303765.92830-0.549505.900005.01880HepG2DDX3X
    EIF3DENSG00000100353.132215.613903018.02360-0.445904.546503.26560HepG2DDX5
    EIF3DENSG00000100353.131722.568802484.44810-0.5284011.4913010.30720HepG2DKC1
    EIF3DENSG00000100353.131791.031602419.46110-0.433905.395704.44240HepG2DNAJC21
    EIF3DENSG00000100353.131946.669402398.14450-0.300905.468404.59720HepG2DNAJC2
    EIF3DENSG00000100353.132316.311502772.17130-0.259202.611701.48170HepG2EIF2S2
    EIF3DENSG00000100353.13661.746102008.55720-1.6018034.8156031.97100HepG2EIF3D
    EIF3DENSG00000100353.131718.312902390.69930-0.476406.584605.02220HepG2EIF3G
    EIF3DENSG00000100353.131703.167403436.73870-1.0128015.4266013.93280HepG2EIF4A3
    EIF3DENSG00000100353.132469.753303165.83600-0.358203.735102.47680HepG2ESF1
    EIF3DENSG00000100353.133883.195504475.99850-0.205002.963302.34460HepG2ETF1
    EIF3DENSG00000100353.132736.664703467.69360-0.341602.685502.00400HepG2FXR1
    EIF3DENSG00000100353.132122.077903216.70570-0.600106.390105.40070HepG2G3BP1
    EIF3DENSG00000100353.132638.294003415.06120-0.372303.203002.24340HepG2G3BP2
    EIF3DENSG00000100353.131482.953802577.24700-0.7974010.338109.15420HepG2GPKOW
    EIF3DENSG00000100353.132134.225102479.08960-0.216102.574701.62670HepG2HDGF
    EIF3DENSG00000100353.131383.841002442.64070-0.8198015.1108013.79670HepG2HNRNPA1
    EIF3DENSG00000100353.131296.351902717.00210-1.0676024.3803022.56070HepG2HNRNPC
    EIF3DENSG00000100353.133068.824103541.79580-0.206802.552501.86310HepG2HNRNPF
    EIF3DENSG00000100353.134568.749003257.412700.488005.982504.98450HepG2HNRNPK
    EIF3DENSG00000100353.131952.885902459.51660-0.332802.598001.98450HepG2HNRNPLL
    EIF3DENSG00000100353.132176.113802699.03770-0.310705.012604.21710HepG2HNRNPU
    EIF3DENSG00000100353.132894.185103487.65830-0.269102.861902.12520HepG2IGF2BP1
    EIF3DENSG00000100353.132503.905103288.79780-0.393402.513401.56820HepG2KHSRP
    EIF3DENSG00000100353.132404.624603613.62330-0.587604.645803.02380HepG2KRR1
    EIF3DENSG00000100353.133673.983004653.96970-0.341102.089701.37570HepG2LARP4
    EIF3DENSG00000100353.131938.318903468.90490-0.8397012.5222011.16530HepG2MAGOH
    EIF3DENSG00000100353.132593.587503488.29260-0.427603.429202.73340HepG2MATR3
    EIF3DENSG00000100353.131583.824902508.44250-0.663404.846503.53960HepG2MTPAP
    EIF3DENSG00000100353.132085.694703570.43920-0.7756010.446009.25540HepG2NCBP2
    EIF3DENSG00000100353.134360.087103815.625800.192302.084901.42080HepG2NOL12
    EIF3DENSG00000100353.132135.947103179.60670-0.574006.199905.13110HepG2PABPC4
    EIF3DENSG00000100353.132549.149203435.79020-0.430609.278308.27270HepG2PCBP1
    EIF3DENSG00000100353.132120.271802949.92830-0.4764010.115108.77100HepG2PRPF4
    EIF3DENSG00000100353.132063.134103496.13800-0.7609024.2048022.89220HepG2PTBP1
    EIF3DENSG00000100353.132936.529103642.49850-0.310802.881202.27430HepG2PUF60
    EIF3DENSG00000100353.131948.641302645.07070-0.440808.362007.39060HepG2PUS1
    EIF3DENSG00000100353.132150.247103786.20540-0.8163022.8079021.26630HepG2QKI
    EIF3DENSG00000100353.135072.736103537.167000.520109.596308.13270HepG2RBM15
    EIF3DENSG00000100353.131731.011003436.29970-0.9892025.4268023.50740HepG2RBM25
    EIF3DENSG00000100353.131666.887802281.68680-0.452904.109602.81200HepG2RCC2
    EIF3DENSG00000100353.132420.993203890.78860-0.6845021.8412020.60270HepG2NELFE
    EIF3DENSG00000100353.132637.322203623.88110-0.4585010.598809.51250HepG2RECQL
    EIF3DENSG00000100353.131743.306702591.40080-0.571906.875005.65050HepG2RPS2
    EIF3DENSG00000100353.131458.323702811.44430-0.9470010.910509.36440HepG2RPS3A
    EIF3DENSG00000100353.131971.686402434.42100-0.304102.462101.79380HepG2SF3B1
    EIF3DENSG00000100353.132238.746503639.76400-0.7012022.9451021.52030HepG2SF3B4
    EIF3DENSG00000100353.132081.550102802.99150-0.4293011.6165010.44090HepG2SMN1
    EIF3DENSG00000100353.134153.623102708.725500.616704.520203.51140HepG2SNRNP70
    EIF3DENSG00000100353.134837.491604225.354300.195102.809602.30540HepG2SRFBP1
    EIF3DENSG00000100353.132359.531903799.19380-0.6872024.2531023.15520HepG2SRSF1
    EIF3DENSG00000100353.132834.596803596.64680-0.343505.271104.44900HepG2SRSF5
    EIF3DENSG00000100353.132822.116903479.69530-0.302205.034504.13940HepG2SRSF7
    EIF3DENSG00000100353.132762.485403090.90520-0.162101.781201.32120HepG2SRSF9
    EIF3DENSG00000100353.132193.802903668.51440-0.7418027.8655026.61960HepG2SSB
    EIF3DENSG00000100353.133274.661504090.19840-0.320804.668403.89790HepG2SUCLG1
    EIF3DENSG00000100353.131592.040302169.23690-0.446303.405402.66490HepG2SUPV3L1
    EIF3DENSG00000100353.132546.696803415.05260-0.423307.292206.45720HepG2TAF15
    EIF3DENSG00000100353.131595.169102397.33410-0.587707.598606.47430HepG2TARDBP
    EIF3DENSG00000100353.132326.533603137.76750-0.431605.726404.53580HepG2TIA1
    EIF3DENSG00000100353.131430.450602622.55960-0.8745021.6087020.45650HepG2TIAL1
    EIF3DENSG00000100353.131611.456202393.10200-0.570504.024702.26710HepG2TRA2A
    EIF3DENSG00000100353.132295.410602646.06770-0.205101.867601.38640HepG2TRIM56
    EIF3DENSG00000100353.132365.662903558.85310-0.589209.845908.00570HepG2TUFM
    EIF3DENSG00000100353.132420.433003156.75380-0.383203.992503.24400HepG2U2AF1
    EIF3DENSG00000100353.132025.885202693.63860-0.411005.714404.76800HepG2UPF1
    EIF3DENSG00000100353.132324.875302911.17010-0.324406.463505.50690HepG2ZC3H8
    EIF3DENSG00000100353.133424.045502962.474200.208802.779302.23160HepG2ZNF622
    EIF3DENSG00000100353.1311652.113208551.445400.4463013.7490012.58630K562AGGF1
    EIF3DENSG00000100353.1311776.545808898.123200.404205.093204.19550K562AKAP8L
    EIF3DENSG00000100353.1310894.773109336.191300.222602.664301.76810K562ATP5C1
    EIF3DENSG00000100353.136540.784607577.96930-0.212303.097401.81050K562DDX21
    EIF3DENSG00000100353.139969.648208863.353100.169602.279601.67910K562DDX47
    EIF3DENSG00000100353.1311876.812209575.289700.310705.462504.17720K562DKC1
    EIF3DENSG00000100353.135567.613406972.30680-0.324605.796504.81400K562EIF2S2
    EIF3DENSG00000100353.13767.104305504.82740-2.84320103.4428099.06450K562EIF3D
    EIF3DENSG00000100353.134925.291803887.783100.341204.978003.92660K562EIF3G
    EIF3DENSG00000100353.138194.328006863.794600.255502.170401.41680K562FIP1L1
    EIF3DENSG00000100353.134204.715205182.16670-0.301504.662303.90470K562FXR1
    EIF3DENSG00000100353.133195.318904518.81070-0.500003.875103.00550K562G3BP2
    EIF3DENSG00000100353.138034.194509290.68570-0.209602.037001.38250K562GRSF1
    EIF3DENSG00000100353.132525.920406680.81680-1.4032055.7963053.30520K562HNRNPC
    EIF3DENSG00000100353.1311275.569609443.284600.255702.476001.70080K562KIF1C
    EIF3DENSG00000100353.1311053.430909039.423800.290102.637301.59570K562MAK16
    EIF3DENSG00000100353.135798.739307218.93590-0.316007.209705.95650K562MTPAP
    EIF3DENSG00000100353.136253.712605260.619900.249402.197101.32970K562PCBP2
    EIF3DENSG00000100353.136907.865408882.30210-0.362703.134602.24860K562PCBP3
    EIF3DENSG00000100353.135394.791906812.97790-0.336704.459103.44010K562POLR2G
    EIF3DENSG00000100353.1313324.145008824.807400.594306.537505.74340K562PUS1
    EIF3DENSG00000100353.1311796.409008598.187800.456109.913408.81830K562RBM15
    EIF3DENSG00000100353.134167.392405465.89500-0.391305.440904.04270K562RCC2
    EIF3DENSG00000100353.1313096.955907819.460400.744003.671502.18400K562SNRNP200
    EIF3DENSG00000100353.136850.093308108.54250-0.243305.593104.32220K562SRPK2
    EIF3DENSG00000100353.135920.000206762.82390-0.192002.441401.34600K562SRSF7
    EIF3DENSG00000100353.133505.407804843.99920-0.466604.435903.12390K562SUPV3L1
    EIF3DENSG00000100353.134061.647205126.95320-0.336002.956301.89590K562UCHL5
    EIF3DENSG00000100353.137151.753208504.87160-0.250004.920403.99270K562UPF1
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    216 alternative splicing events after Knockdown/Knockout EIF3D protein :

    Only display 100 entries as example. Please click "View All" button to see all 216 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEKTN1ENSG00000126777.13chr14+5613988956139973561396465613973056142552561426360.177000.000100.03227includedHepG2EIF3D
    SEZCCHC10ENSG00000155329.7chr5-1323585321323585981323424501323426121323621881323622810.332000.000010.00772includedHepG2EIF3D
    SENUPL1ENSG00000139496.11chr13+2588338425883420258819432588208625887020258871700.172000.000230.05670includedHepG2EIF3D
    SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.139000.000330.07221includedHepG2EIF3D
    SES100A16ENSG00000188643.6chr1-1535813741535815061535804741535806531535816531535818130.203000.000030.01220includedHepG2EIF3D
    SETNKSENSG00000173273.11chr8+9629878962993396276409627772963415996345460.251000.000080.02800includedHepG2EIF3D
    SEZDHHC7ENSG00000153786.8chr16-8502236885022479850154758501560085023909850242410.082000.000190.04955includedHepG2EIF3D
    SEDPM1ENSG00000000419.8chr20-4955764149557746495574014955747049558567495586630.052000.000500.09609includedHepG2EIF3D
    SEPLOD2ENSG00000152952.7chr3-1457956481457957111457945681457946821457969021457969970.185000.000000.00004includedHepG2EIF3D
    SEHMMRENSG00000072571.15chr5+1628947061628947541628917281628918081628966461628968350.399000.000240.05855includedHepG2EIF3D
    SEIL17RBENSG00000056736.5chr3+5388932053889368538868975388702453890870538910040.152000.000470.09477includedHepG2EIF3D
    SEAPOC1ENSG00000130208.5chr19+4541792845417990454175034541774645418128454182060.086000.000230.05670includedHepG2EIF3D
    SEEIF4HENSG00000106682.10chr7+7360457673604636736041517360424873609070736092080.087000.000030.01524includedHepG2EIF3D
    SETMEM214ENSG00000119777.14chr2+2726065727260760272604282726057027261013272611050.110000.000060.02219includedHepG2EIF3D
    SEPATZ1ENSG00000100105.13chr22-3172477231724910317217893172329531731677317318490.258000.000170.04463includedHepG2EIF3D
    SESPTAN1ENSG00000197694.9chr9+1313552611313553211313537551313539041313564531313566520.240000.000190.04955includedHepG2EIF3D
    SEMYNNENSG00000085274.11chr3+1694918181694918851694912141694912501694920521694923490.411000.000340.07392includedHepG2EIF3D
    SECERKENSG00000100422.9chr22-4708776647087919470874684708767447089323470894000.164000.000130.03814includedHepG2EIF3D
    SESF3B1ENSG00000115524.11chr2-1982836191982836751982832321982833121982851511982852660.073000.000000.00266includedHepG2EIF3D
    SERBM25ENSG00000119707.9chr14+7357801673578090735775387357786373578235735785100.115000.000000.00024includedHepG2EIF3D
    SEPPP4CENSG00000149923.9chr16+3009257930092631300876353008779630093804300938550.070000.000520.09804includedHepG2EIF3D
    SECHD1LENSG00000131778.13chr1+1467425921467426661467404401467405371467438311467439420.111000.000170.04463includedHepG2EIF3D
    SESAT1ENSG00000130066.12chrX+2380241023802520238019252380200023803444238035460.074000.000010.00484includedHepG2EIF3D
    SEMORF4L2ENSG00000123562.12chrX-1029396081029396571029334261029335791029400981029401880.194000.000000.00016includedHepG2EIF3D
    SELMO7ENSG00000136153.15chr13+7638328976383319763784247637867776391296763914140.258000.000000.00003includedHepG2EIF3D
    SESONENSG00000159140.13chr21+3494485634944936349412763494139334945613349457610.100000.000000.00089includedHepG2EIF3D
    SETGFBR2ENSG00000163513.13chr3+3066469030664765306480923064846930686238306864070.123000.000270.06231includedHepG2EIF3D
    SEHNRNPDENSG00000138668.14chr4-8329268083292737832807218328079283294598832951090.193000.000000.00000includedHepG2EIF3D
    SERRAGBENSG00000083750.8chrX+5577867355778834557775335577762955779824557799470.655000.000460.09237includedHepG2EIF3D
    SESH3D19ENSG00000109686.12chr4-1520653711520654401520650611520652021520690731520693380.227000.000350.07453includedHepG2EIF3D
    SESMPDL3AENSG00000172594.8chr6+1231224541231225511231179681231181131231248081231249780.143000.000490.09514includedHepG2EIF3D
    SEMITD1ENSG00000158411.6chr2-9978987699789965997879729978810999790377997904790.139000.000130.03740includedHepG2EIF3D
    SESNX25ENSG00000109762.11chr4+1862399241862400931862317631862319701862418861862420180.185000.000540.09966includedHepG2EIF3D
    SEGNPNAT1ENSG00000100522.4chr14-5325455053254589532512145325138253258145532583860.141000.000320.07036includedHepG2EIF3D
    SERALYENSG00000125970.7chr20+3266162432661672326613683266144132663679326638450.097000.000000.00075includedHepG2EIF3D
    SERAB9AENSG00000123595.5chrX+1372193213722021137072431370740713726839137286250.308000.000210.05336includedHepG2EIF3D
    SEMYCBP2ENSG00000005810.13chr13-7769247477692630776722917767314877695507776956300.478000.000380.08197includedHepG2EIF3D
    SEWDR59ENSG00000103091.10chr16-7495182674951906749500247495015774955844749560010.126000.000260.06155includedHepG2EIF3D
    SENONOENSG00000147140.11chrX+7051386770513934705116287051182270514076705141520.056000.000000.00000includedHepG2EIF3D
    SEABCC2ENSG00000023839.6chr10+1015791841015792991015788451015790261015900631015901900.090000.000120.03562includedHepG2EIF3D
    SEFLNBENSG00000136068.10chr3+5812758458127656581240085812425658128376581284790.197000.000000.00216includedHepG2EIF3D
    SESLC7A2ENSG00000003989.12chr8+1735976517359811173547231735474617400826174012240.379000.000080.02789includedHepG2EIF3D
    SEHIPK3ENSG00000110422.7chr11+3336971133369774333693973336955933370067333703640.340000.000170.04463includedHepG2EIF3D
    SEWSB1ENSG00000109046.10chr17+2563476925634945256338072563390825636125256362980.225000.000000.00238includedHepG2EIF3D
    SEANKRD11ENSG00000167522.10chr16-8935808889358185893574208935759189371613893717520.261000.000000.00065includedHepG2EIF3D
    SEHSF2ENSG00000025156.8chr6+1227490471227491011227447251227448311227525741227526590.333000.000250.06040includedHepG2EIF3D
    SESMPD4ENSG00000136699.15chr2-1309187581309188451309149331309149691309219461309220180.207000.000040.01782includedHepG2EIF3D
    SEEXOC7ENSG00000182473.16chr17-7408640974086478740852557408540174090494740906620.186000.000000.00302includedHepG2EIF3D
    SEDHRS2ENSG00000100867.10chr14+2411087424110988241090432410910424112360241124280.137000.000000.00000includedHepG2EIF3D
    SEUPF3AENSG00000169062.10chr13+1150483111150484181150473991150476021150519931150521040.330000.000000.00101includedHepG2EIF3D
    SEATP2A1ENSG00000196296.9chr16+2891502028915062289146432891476128915500289157850.500000.000340.07392includedHepG2EIF3D
    SEU2AF1ENSG00000160201.7chr21-4452056244520629445158034451585344521475445215420.139000.000070.02443includedHepG2EIF3D
    SEMRPL22ENSG00000082515.12chr5+1543303801543304981543206541543208251543359301543359960.168000.000060.02344includedHepG2EIF3D
    SEZNF638ENSG00000075292.14chr2+7160796771608033716076427160769571623270716233210.185000.000110.03474includedHepG2EIF3D
    SEACSF2ENSG00000167107.8chr17+4854188648541960485415784854165548548388485487610.136000.000150.04241includedHepG2EIF3D
    SEACADMENSG00000117054.9chr1+7625238476252482762517177625195976253181762532600.108000.000330.07171includedHepG2EIF3D
    SEIL4RENSG00000077238.9chr16+2735778727357939273561892735634127363860273640170.077000.000220.05546includedHepG2EIF3D
    SEGOLGA2ENSG00000167110.12chr9-1310350631310351441310306981310308031310361281310362510.205000.000000.00157includedHepG2EIF3D
    SESCML1ENSG00000047634.10chrX+1776219017762339177555881775580017764134177642180.459000.000070.02525includedHepG2EIF3D
    SECD46ENSG00000117335.14chr1+2079635972079636902079589632079590272079668632079688580.133000.000020.00874includedHepG2EIF3D
    SEDDX27ENSG00000124228.10chr20+4784755947847652478467354784688647849842478499420.107000.000010.00772includedHepG2EIF3D
    SETXLNG2PENSG00000131002.7chrY+2176043721760525217592422175955121761624217617170.225000.000010.00375includedHepG2EIF3D
    SEABCD4ENSG00000119688.16chr14-7476625074766378747645387476477274766852747669710.353000.000010.00790includedHepG2EIF3D
    SEGPR126ENSG00000112414.10chr6+1427048961427049801427030871427031561427113941427114800.280000.000000.00091includedHepG2EIF3D
    SEGPR126ENSG00000112414.10chr6+1427620441427620901427593481427595011427644731427674030.260000.000000.00000includedHepG2EIF3D
    SENF1ENSG00000196712.12chr17+2957995529580018295760012957613729585361295855200.333000.000050.02035includedHepG2EIF3D
    SESTAT6ENSG00000166888.6chr12-5750382557503893575019455750208257504911575051570.166000.000040.01893includedHepG2EIF3D
    SEANKLE2ENSG00000176915.10chr12-1333183941333184771333180041333180711333197391333198620.169000.000270.06231includedHepG2EIF3D
    SEPCYT2ENSG00000185813.6chr17-7986507979865133798646357986477479865429798654740.156000.000490.09514includedHepG2EIF3D
    SEPPFIBP1ENSG00000110841.9chr12+2782999627830029278293602782953227832421278325720.397000.000200.05165includedHepG2EIF3D
    SEPEG3ENSG00000198300.8chr19-5734465757344788573356455733579557347385573474720.195000.000000.00046includedHepG2EIF3D
    SEFN1ENSG00000115414.14chr2-2162369922162370232162366312162367382162380442162381340.125000.000530.09957includedHepG2EIF3D
    SEGJB1ENSG00000169562.9chrX+7044243370442616704351087043514070443541704438100.070000.000220.05383includedHepG2EIF3D
    SESORBS2ENSG00000154556.13chr4-1865729371865729821865706201865708101865738151865738820.361000.000010.00455includedHepG2EIF3D
    SEABCG5ENSG00000138075.7chr2-4404140844041484440396984404044844041615440417280.120000.000010.00460includedHepG2EIF3D
    SECLASP1ENSG00000074054.13chr2-1222030241222030721221876481221877531222049121222050830.283000.000070.02525includedHepG2EIF3D
    SERWDD2AENSG00000013392.6chr6+8390491383904990839040308390437183905313839086510.421000.000510.09714includedHepG2EIF3D
    SEEVA1AENSG00000115363.9chr2-7575323775753325757494907574961375787805757880640.698000.000000.00070includedHepG2EIF3D
    SEEVA1AENSG00000115363.9chr2-7574731975747394757451837574533475749490757496130.275000.000190.04955includedHepG2EIF3D
    SESH2D4AENSG00000104611.7chr8+1921471319214794191921961919236819218713192188250.374000.000090.02919includedHepG2EIF3D
    SECPSF6ENSG00000111605.12chr12+6965181469651925696515116965168569652369696528740.166000.000300.06652includedHepG2EIF3D
    SECSNK2A1ENSG00000101266.12chr20-5085765086934890944893045243155244650.091000.000060.02394includedHepG2EIF3D
    SEKMT2DENSG00000167548.10chr12-4941783549417883494163724941665849418360494185140.110000.000050.01920includedHepG2EIF3D
    SEPPIL3ENSG00000240344.4chr2-2017470642017471582017461432017462112017504202017504950.201000.000010.00430includedHepG2EIF3D
    SEALDOCENSG00000109107.9chr17-2690298226903038269024382690256226903818269039660.104000.000080.02789includedHepG2EIF3D
    SEZNF516ENSG00000101493.6chr18-7408248274082550740701447407451274083421740835260.175000.000030.01516includedHepG2EIF3D
    SERP11-640M9.2ENSG00000225241.3chr1+1446044091446045081445985111445987801446063681446065100.451000.000490.09514includedHepG2EIF3D
    SETUG1ENSG00000253352.4chr22+3136803331368158313674243136776531368840313693420.185000.000070.02537includedHepG2EIF3D
    SETTLENSG00000114999.7chr2+1132787981132789181132778581132780021132862571132993160.189000.000010.00357includedHepG2EIF3D
    SEMPIENSG00000178802.13chr15+7518935175189560751884927518866675189852751905690.173000.000130.03740includedHepG2EIF3D
    SEFAM60AENSG00000139146.9chr12-3145791531458057314510103145115831478957314790700.244000.000020.00794includedHepG2EIF3D
    SEGKENSG00000198814.8chrX+3068612830686235306836273068370130695491306955690.067000.000000.00122includedHepG2EIF3D
    SEPHIPENSG00000146247.13chr6-7971408979714153797134467971357579724798797249330.543000.000020.00929includedHepG2EIF3D
    SEMETTL22ENSG00000067365.10chr16+8728895872893687227568722967872902487291390.366000.000040.01782includedHepG2EIF3D
    SECCDC92ENSG00000119242.4chr12-1244288181244289011244278931244280401244570751244573780.672000.000170.04463includedHepG2EIF3D
    SEMAPK13ENSG00000156711.12chr6+3609869636098934360980973609847836099047360991770.114000.000480.09514includedHepG2EIF3D
    SEC12orf23ENSG00000151135.5chr12+1073508591073509271073496441073498431073608881073609580.252000.000420.08780includedHepG2EIF3D
    SEC19orf48ENSG00000167747.9chr19-5130252851302614513019605130221551305473513055140.107000.000450.09237includedHepG2EIF3D
    SEIFT46ENSG00000118096.3chr11-1184284521184286051184276201184277601184304991184305790.219000.000500.09543includedHepG2EIF3D
    SEAKR1A1ENSG00000117448.9chr1+4601810746018235460166374601682746027460460275500.169000.000110.03474includedHepG2EIF3D





    2 RBPs can affect the splicing of EIF3D :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEEIF3DENSG00000100353.13chr22-369133473691354036912751369128373691480936914957-0.052000.000710.01439excludedK562HNRNPC
    A3SSEIF3DENSG00000100353.13chr22-3691925536919490369192553691932836919941369201760.055000.000000.00000longerK562AQR

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein EIF3D and its RNA.