SPRTN

General Information

Gene Name       : SPRTN
Gene ID             : ENSG00000010072.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SPRTN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SPRTNENSG00000010072.156.087.576.83ENCSR000AEF
HepG2SPRTNENSG00000010072.158.507.658.07ENCSR985KAT
K562SPRTNENSG00000010072.1512.4315.0713.75ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SPRTN is not avaliable on ENCORE database.



Proteins bound to RNA
  • SPRTN RNA is bound by 2 proteins.  







eCLIP assay for SPRTN is not avaliable on ENCORE database.





2 proteins are bound to SPRTN RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1231474035231474140+5'-UTR,CDS5.118924.54356K562DDX3X
chr1231475531231475676+5'-UTR,CDS,intron-Proximal3.564383.88924K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SPRTN is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SPRTN is not available on ENCORE database.

  • 73 RBPs can affect the levels of SPRTN.  








The Knockdown/knockout RNA-Seq assay for SPRTN is not available on ENCORE database.





73 RBPs can affect the gene expression of SPRTN :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SPRTNENSG00000010072.11402.35230169.064801.250809.649208.72120HepG2AKAP1
SPRTNENSG00000010072.11196.98060138.372100.509402.265301.56360HepG2AKAP8L
SPRTNENSG00000010072.11236.41700132.901800.830904.287103.33760HepG2CIRBP
SPRTNENSG00000010072.11193.07880137.688900.487702.137501.54190HepG2CKAP4
SPRTNENSG00000010072.11144.83730218.70950-0.594602.080201.47420HepG2CPSF6
SPRTNENSG00000010072.11152.82790208.72070-0.449702.088101.43100HepG2DAZAP1
SPRTNENSG00000010072.11202.13920127.386800.666003.931802.95840HepG2DDX19B
SPRTNENSG00000010072.11219.23120119.109500.880104.732203.87150HepG2DDX21
SPRTNENSG00000010072.11192.51470116.533500.724103.239602.24950HepG2DDX24
SPRTNENSG00000010072.11333.41310161.950001.041707.228406.26190HepG2DDX3X
SPRTNENSG00000010072.1181.86630139.12130-0.765002.384701.80760HepG2DDX6
SPRTNENSG00000010072.11200.32730131.784600.604102.780702.10200HepG2DKC1
SPRTNENSG00000010072.11215.66790112.743100.935702.157201.34260HepG2EEF2
SPRTNENSG00000010072.11183.2963091.493801.002303.505602.49480HepG2EIF3D
SPRTNENSG00000010072.11176.08850112.463500.646702.641301.58470HepG2EIF3G
SPRTNENSG00000010072.11224.65090147.794600.604002.407701.81000HepG2EIF4A3
SPRTNENSG00000010072.11336.13300143.901501.223907.805506.67980HepG2EIF4B
SPRTNENSG00000010072.11133.82840197.20360-0.559302.410601.64830HepG2EIF4G2
SPRTNENSG00000010072.11226.32320134.579100.749804.092403.07780HepG2EWSR1
SPRTNENSG00000010072.11290.30570187.054800.634002.905002.11640HepG2FIP1L1
SPRTNENSG00000010072.11268.15870149.122800.846504.646603.76580HepG2FXR1
SPRTNENSG00000010072.11242.10740138.331000.807404.150603.34530HepG2G3BP1
SPRTNENSG00000010072.11146.2541081.455000.844303.052902.10880HepG2GEMIN5
SPRTNENSG00000010072.11200.07040278.18220-0.475502.427001.75250HepG2HNRNPF
SPRTNENSG00000010072.11161.84270236.62290-0.548002.109701.55240HepG2HNRNPLL
SPRTNENSG00000010072.11194.53330129.128000.591102.730301.78570HepG2HNRNPM
SPRTNENSG00000010072.11192.23230273.93260-0.511002.418101.73960HepG2IGF2BP1
SPRTNENSG00000010072.11212.38330140.609700.594902.340901.71440HepG2IGF2BP2
SPRTNENSG00000010072.11288.01650131.959301.126003.541402.42820HepG2IGF2BP3
SPRTNENSG00000010072.11287.67920149.174900.947405.836204.89410HepG2MAGOH
SPRTNENSG00000010072.11423.25000150.009101.4964014.0868012.74030HepG2MATR3
SPRTNENSG00000010072.11194.4106095.736401.021903.382602.22310HepG2METAP2
SPRTNENSG00000010072.11287.93690151.498200.926406.682405.47870HepG2MSI2
SPRTNENSG00000010072.11290.07840153.542100.917705.447204.57240HepG2NCBP2
SPRTNENSG00000010072.11128.50910209.79110-0.707102.842002.08290HepG2NSUN2
SPRTNENSG00000010072.11186.44380125.401300.572102.461301.88110HepG2PCBP1
SPRTNENSG00000010072.11283.69140159.675600.829103.994802.54240HepG2PRPF6
SPRTNENSG00000010072.11226.82310139.329700.703003.106002.25480HepG2PRPF8
SPRTNENSG00000010072.11217.77870127.593200.771204.313403.66320HepG2PTBP1
SPRTNENSG00000010072.11345.54180209.676600.720605.855305.05790HepG2PUM1
SPRTNENSG00000010072.11212.14290140.306700.596403.120502.47470HepG2PUS1
SPRTNENSG00000010072.11506.31190290.922000.799308.369207.58160HepG2RBM22
SPRTNENSG00000010072.11183.15840125.421400.546202.001001.42090HepG2RBM25
SPRTNENSG00000010072.11275.77800175.619500.651003.332002.23720HepG2RBM27
SPRTNENSG00000010072.11296.89810142.005001.063908.377007.52800HepG2NELFE
SPRTNENSG00000010072.11250.98410132.247500.924306.118805.25110HepG2RECQL
SPRTNENSG00000010072.11196.2105089.055601.139506.397905.50480HepG2RPS19
SPRTNENSG00000010072.11260.97950161.978200.688003.564102.65830HepG2RPS2
SPRTNENSG00000010072.11215.30790137.828000.643402.523701.76910HepG2RRP9
SPRTNENSG00000010072.11147.9333089.336800.727502.413501.53330HepG2SERBP1
SPRTNENSG00000010072.11216.52110132.854000.704603.446502.79580HepG2SF3B4
SPRTNENSG00000010072.11237.06850154.895200.613903.535502.82290HepG2SMN1
SPRTNENSG00000010072.11434.51530260.611800.737402.102701.42480HepG2SNRNP70
SPRTNENSG00000010072.11439.68770138.665501.6648023.9783022.88530HepG2SRSF1
SPRTNENSG00000010072.11304.20750195.016000.641402.704502.08360HepG2SRSF5
SPRTNENSG00000010072.11291.03480192.951600.592902.873101.98110HepG2TUFM
SPRTNENSG00000010072.11296.35030160.074900.888505.656204.77440HepG2U2AF1
SPRTNENSG00000010072.11262.76260146.832600.839505.693104.88450HepG2UTP3
SPRTNENSG00000010072.11290.93890161.197200.851804.490803.15510HepG2XRCC6
SPRTNENSG00000010072.11540.72920384.558300.491603.248801.95640K562AARS
SPRTNENSG00000010072.111131.08380866.260600.384702.313701.76970K562AQR
SPRTNENSG00000010072.11358.74600483.57220-0.430803.316302.26380K562BCLAF1
SPRTNENSG00000010072.11325.28510453.99440-0.481003.136302.30060K562CPSF6
SPRTNENSG00000010072.11318.33190424.01140-0.413602.908301.55060K562DDX27
SPRTNENSG00000010072.11937.02750796.245000.234801.913301.35280K562DDX47
SPRTNENSG00000010072.11531.55130680.65640-0.356702.774702.05520K562EIF2S2
SPRTNENSG00000010072.11627.04610421.292700.573605.811304.98220K562FXR1
SPRTNENSG00000010072.11729.83340907.12920-0.313701.972001.32750K562GRSF1
SPRTNENSG00000010072.11268.23120420.78250-0.649604.515903.77170K562HNRNPC
SPRTNENSG00000010072.11551.01080719.54400-0.385002.808601.74340K562HNRNPL
SPRTNENSG00000010072.11318.17460423.10420-0.411202.124101.35580K562METAP2
SPRTNENSG00000010072.11520.31930684.41420-0.395503.982503.10670K562NSUN2
SPRTNENSG00000010072.11272.84830377.27580-0.467502.547301.68500K562PSIP1
SPRTNENSG00000010072.11650.73230467.033200.478402.535401.89590K562PTBP1
SPRTNENSG00000010072.11495.96870675.34450-0.445404.157303.17040K562SF3A3
SPRTNENSG00000010072.11615.03540457.814800.425803.072902.33120K562SRSF1
SPRTNENSG00000010072.11551.94410438.112600.333102.084901.37160K562SYNCRIP
SPRTNENSG00000010072.11468.73170725.69900-0.630608.452507.27900K562UPF1
SPRTNENSG00000010072.11477.05810620.95750-0.380302.613801.76090K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SPRTN is not available on ENCORE database.






No RBPs affect the alternative splcing events of SPRTN on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SPRTN is not avaliable on ENCORE database.