SYNCRIP

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SYNCRIP	ENSG00000135316.17	209.81	173.85	191.83	ENCSR000AEF
HepG2	SYNCRIP	ENSG00000135316.17	72.54	127.49	100.02	ENCSR985KAT
K562	SYNCRIP	ENSG00000135316.17	196.34	198.33	197.34	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	SYNCRIP-BGKcLV06-K562	ENCSR680OJB	SYNCRIP	K562	Released		ENCSR341TTW	CRISPR	KD% = 49.3,64.3
RNA Bind-n-Seq	RBNS: SYNCRIP		SYNCRIP	cell-free sample	Released

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SYNCRIP	ENCAB548DAU	RN046PW	1		Released, ENCODE3			BGKcLV06-37, Released, ENCODE3
SYNCRIP		8588S	1		Released, ENCODE3	Submitted, ENCORE2

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
SYNCRIP	HepG2	shRNA			BGHLV35-51,BGHLV35-52	BGHLV35-1,BGHLV35-2		NotSatisfied	ENCODE3
SYNCRIP	K562	CRISPR	ENCSR680OJB	ENCSR341TTW	SYNCRIP-BGKcLV06-37,SYNCRIP-BGKcLV06-38	NT-BGKcLV06-1,NT-BGKcLV06-2	49.3,64.3	Released	ENCODE3
SYNCRIP	HepG2	CRISPR			BGHcLV07-37,BGHcLV07-38	BGHcLV07-1,BGHcLV07-2	31.9,42.5	NotSatisfied	ENCODE3
SYNCRIP	HepG2	CRISPR			BGHcLV09-23,BGHcLV09-24	BGHcLV09-1,BGHcLV09-2	0.0,0.0	NotSatisfied	ENCODE4

GeneName	gene_aliases	Status	Project	Note
SYNCRIP	SYNCRIP		Released	ENCODE4

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SYNCRIP is not avaliable on ENCORE database.

The binding motifs of SYNCRIP

Proteins bound to RNA

SYNCRIP RNA is bound by 57 proteins.

eCLIP assay for SYNCRIP is not avaliable on ENCORE database.

57 proteins are bound to SYNCRIP RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	86322550	86322633	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.45746	3.95966	K562	FUS
chr6	86320683	86320751	-	3'-UTR,intron-Distal	3.25101	3.31157	HepG2	KHSRP
chr6	86321601	86321642	-	3'-UTR,intron-Distal	3.01693	4.87047	K562	FAM120A
chr6	86323929	86324016	-	3'-UTR,intron-Distal	3.90491	7.22994	K562	KHSRP
chr6	86322220	86322260	-	3'-UTR,intron-Distal	3.71671	6.04577	K562	FAM120A
chr6	86324364	86324391	-	3'-UTR,intron-Distal	4.11478	5.35091	K562	PUM2
chr6	86322539	86322633	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.65943	4.83675	HepG2	G3BP1
chr6	86320699	86320734	-	3'-UTR,intron-Distal	3.36287	6.79091	K562	PUM2
chr6	86322593	86322657	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.12777	5.04216	K562	U2AF1
chr6	86322515	86322599	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.21380	3.69997	K562	GRWD1
chr6	86322508	86322543	-	3'-UTR,intron-Distal,intron-Proximal	3.66284	9.34382	K562	YBX3
chr6	86319610	86319643	-	3'-UTR,intron-Distal	4.78376	5.84761	K562	FAM120A
chr6	86320751	86320817	-	3'-UTR,intron-Distal	3.90256	5.34065	HepG2	KHSRP
chr6	86319540	86319579	-	3'-UTR,intron-Distal	3.50264	4.26772	K562	FAM120A
chr6	86318711	86318769	-	3'-UTR,intron-Distal	3.58377	5.65632	K562	UPF1
chr6	86320694	86320810	-	3'-UTR,intron-Distal	5.74394	15.67094	HepG2	CSTF2
chr6	86319531	86319570	-	3'-UTR,intron-Distal	3.07161	3.57824	K562	UPF1
chr6	86321745	86321793	-	3'-UTR,intron-Distal	3.89116	20.46341	K562	PUM2
chr6	86322533	86322606	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.74128	5.35719	HepG2	GRWD1
chr6	86322598	86322659	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.09211	7.59053	K562	U2AF2
chr6	86321899	86321928	-	3'-UTR,intron-Distal	5.52832	56.94332	K562	PUM2
chr6	86320859	86320880	-	3'-UTR,intron-Distal	3.21166	4.61367	K562	UPF1
chr6	86321928	86322001	-	3'-UTR,intron-Distal	5.36673	400.00000	K562	PUM2
chr6	86322443	86322515	-	3'-UTR,intron-Distal,intron-Proximal	3.20363	4.24058	K562	GRWD1
chr6	86321807	86321880	-	3'-UTR,intron-Distal	3.61306	12.01639	K562	YBX3
chr6	86318091	86318127	-	3'-UTR,intron-Distal	3.80526	3.42844	K562	KHSRP
chr6	86322544	86322588	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.89813	4.09885	HepG2	BCLAF1
chr6	86319589	86319650	-	3'-UTR,intron-Distal	3.07840	6.55259	K562	KHSRP
chr6	86321698	86321745	-	3'-UTR,intron-Distal	3.50292	25.46782	K562	PUM2
chr6	86352940	86352997	-	5'-UTR,intron-Distal	3.42193	12.47393	HepG2	FAM120A
chr6	86352544	86352602	-	5'-UTR,intron-Distal	3.80936	3.01533	HepG2	SRSF1
chr6	86352674	86352688	-	5'-UTR,intron-Distal	4.39001	3.63072	HepG2	AQR
chr6	86352652	86352751	-	5'-UTR,intron-Distal,intron-Proximal	8.27708	74.88316	HepG2	PRPF4
chr6	86352758	86352836	-	5'-UTR,intron-Distal,intron-Proximal	6.48704	18.63293	HepG2	FAM120A
chr6	86352510	86352547	-	5'-UTR,intron-Distal	3.39184	12.41221	K562	DDX3X
chr6	86352661	86352719	-	5'-UTR,intron-Distal,intron-Proximal	3.52351	4.48593	HepG2	FTO
chr6	86352671	86352721	-	5'-UTR,intron-Distal,intron-Proximal	3.44381	4.04314	K562	DGCR8
chr6	86352661	86352721	-	5'-UTR,intron-Distal,intron-Proximal	3.34666	10.35256	K562	DDX52
chr6	86352916	86352998	-	5'-UTR,intron-Distal	3.94076	8.86812	HepG2	PCBP2
chr6	86352513	86352544	-	5'-UTR,intron-Distal	3.46258	4.96025	HepG2	SRSF1
chr6	86352663	86352727	-	5'-UTR,intron-Distal,intron-Proximal	4.30579	3.23469	K562	EIF3G
chr6	86352665	86352717	-	5'-UTR,intron-Distal,intron-Proximal	3.08036	6.93794	HepG2	EFTUD2
chr6	86352662	86352714	-	5'-UTR,intron-Distal,intron-Proximal	3.04482	11.14648	K562	EFTUD2
chr6	86352770	86352805	-	5'-UTR,intron-Distal,intron-Proximal	3.52757	4.45974	HepG2	GTF2F1
chr6	86352673	86352718	-	5'-UTR,intron-Distal,intron-Proximal	3.19847	5.95593	K562	DDX3X
chr6	86352644	86352726	-	5'-UTR,intron-Distal,intron-Proximal	5.82615	26.18210	HepG2	GTF2F1
chr6	86351167	86351276	-	5'-UTR,intron-Distal,intron-Proximal	3.93309	6.19659	HepG2	AQR
chr6	86352969	86353018	-	5'-UTR,intron-Distal,intron-Proximal	5.61064	35.90789	HepG2	PRPF4
chr6	86352686	86352727	-	5'-UTR,intron-Distal,intron-Proximal	5.19908	6.34419	K562	PUM2
chr6	86352646	86352726	-	5'-UTR,intron-Distal,intron-Proximal	3.43785	6.03398	HepG2	HNRNPU
chr6	86352656	86352707	-	5'-UTR,intron-Distal	7.01422	90.97310	K562	GTF2F1
chr6	86352902	86353006	-	5'-UTR,intron-Distal,intron-Proximal	3.87973	16.09037	K562	FTO
chr6	86352665	86352731	-	5'-UTR,intron-Distal,intron-Proximal	3.86252	8.50355	K562	RPS3
chr6	86352657	86352719	-	5'-UTR,intron-Distal,intron-Proximal	3.51468	3.29341	HepG2	HNRNPUL1
chr6	86352917	86352942	-	5'-UTR,intron-Distal	5.69056	15.18827	K562	CSTF2T
chr6	86351143	86351170	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.44721	3.90917	HepG2	PRPF4
chr6	86352660	86352716	-	5'-UTR,intron-Distal,intron-Proximal	3.59803	9.45155	K562	UCHL5
chr6	86351104	86351171	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.96959	8.02029	HepG2	GRWD1
chr6	86352657	86352728	-	5'-UTR,intron-Distal,intron-Proximal	5.10525	26.09744	K562	FTO
chr6	86352553	86352602	-	5'-UTR,intron-Distal	3.75807	7.91537	HepG2	PRPF4
chr6	86352664	86352715	-	5'-UTR,intron-Distal,intron-Proximal	3.34176	5.44538	HepG2	FASTKD2
chr6	86352655	86352728	-	5'-UTR,intron-Distal,intron-Proximal	5.19896	10.33435	HepG2	XRN2
chr6	86352659	86352752	-	5'-UTR,intron-Distal,intron-Proximal	6.15660	10.66887	HepG2	PCBP2
chr6	86352623	86352732	-	5'-UTR,intron-Distal,intron-Proximal	5.63432	45.46901	K562	CSTF2T
chr6	86352666	86352751	-	5'-UTR,intron-Distal,intron-Proximal	4.96653	25.03772	HepG2	CSTF2T
chr6	86352657	86352723	-	5'-UTR,intron-Distal,intron-Proximal	4.21460	3.88642	HepG2	TAF15
chr6	86352670	86352717	-	5'-UTR,intron-Distal,intron-Proximal	3.92402	16.94409	K562	FASTKD2
chr6	86352922	86352982	-	5'-UTR,intron-Distal	3.28638	7.25614	HepG2	DDX6
chr6	86352907	86353027	-	5'-UTR,intron-Distal,intron-Proximal	3.72985	11.50956	HepG2	NCBP2
chr6	86352707	86352729	-	5'-UTR,intron-Distal,intron-Proximal	8.09543	60.94879	K562	GTF2F1
chr6	86352582	86352654	-	5'-UTR,intron-Distal	4.51947	10.40953	K562	RBM15
chr6	86352509	86352553	-	5'-UTR,intron-Distal	4.64581	11.90236	HepG2	PRPF4
chr6	86352677	86352721	-	5'-UTR,intron-Distal,intron-Proximal	3.05857	3.78918	HepG2	CDC40
chr6	86352654	86352727	-	5'-UTR,intron-Distal,intron-Proximal	4.02874	14.49799	HepG2	DROSHA
chr6	86352942	86352983	-	5'-UTR,intron-Distal	3.23091	10.38409	K562	CSTF2T
chr6	86352916	86352992	-	5'-UTR,intron-Distal	5.03915	24.94858	HepG2	GTF2F1
chr6	86352656	86352721	-	5'-UTR,intron-Distal,intron-Proximal	4.87299	12.52808	K562	DDX24
chr6	86352914	86352936	-	5'-UTR,intron-Distal	5.21104	25.39216	K562	GTF2F1
chr6	86352668	86352720	-	5'-UTR,intron-Distal,intron-Proximal	3.69737	3.57824	K562	UPF1
chr6	86352665	86352719	-	5'-UTR,intron-Distal,intron-Proximal	4.42509	20.78141	K562	DDX51
chr6	86352667	86352720	-	5'-UTR,intron-Distal,intron-Proximal	3.97670	5.28053	K562	PHF6
chr6	86352656	86352724	-	5'-UTR,intron-Distal,intron-Proximal	4.53855	81.04929	K562	DROSHA
chr6	86352966	86353003	-	5'-UTR,intron-Distal	3.58238	6.97756	K562	DDX3X
chr6	86352666	86352728	-	5'-UTR,intron-Distal,intron-Proximal	3.80144	11.97947	K562	XRN2
chr6	86352658	86352722	-	5'-UTR,intron-Distal,intron-Proximal	4.87052	6.58723	HepG2	DGCR8
chr6	86352666	86352740	-	5'-UTR,intron-Distal,intron-Proximal	3.86829	7.18429	K562	FUS
chr6	86352670	86352722	-	5'-UTR,intron-Distal,intron-Proximal	3.37949	20.50129	K562	DHX30
chr6	86352915	86352940	-	5'-UTR,intron-Distal	3.78147	9.08354	HepG2	FAM120A
chr6	86352936	86352995	-	5'-UTR,intron-Distal	4.88401	28.80568	K562	GTF2F1
chr6	86352772	86352874	-	5'-UTR,intron-Distal,intron-Proximal	6.56581	21.63971	HepG2	PRPF4
chr6	86352637	86352656	-	5'-UTR,intron-Distal	4.37108	8.27103	K562	GTF2F1
chr6	86352647	86352716	-	5'-UTR,intron-Distal,intron-Proximal	4.08439	6.70369	HepG2	RPS3
chr6	86351140	86351190	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.63686	5.83621	K562	AQR
chr6	86352623	86352652	-	5'-UTR,intron-Distal	4.57876	4.12025	K562	YBX3
chr6	86352673	86352717	-	5'-UTR,intron-Distal,intron-Proximal	5.11895	10.87784	HepG2	DDX6
chr6	86352669	86352717	-	5'-UTR,intron-Distal,intron-Proximal	3.96599	4.60586	K562	TBRG4
chr6	86352665	86352727	-	5'-UTR,intron-Distal,intron-Proximal	3.27071	3.31075	K562	TAF15
chr6	86352663	86352727	-	5'-UTR,intron-Distal,intron-Proximal	3.35517	20.19875	K562	AKAP8L
chr6	86352645	86352735	-	5'-UTR,intron-Distal,intron-Proximal	5.11903	59.13093	HepG2	FAM120A
chr6	86351147	86351213	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.03923	6.09708	HepG2	BUD13
chr6	86352664	86352717	-	5'-UTR,intron-Distal,intron-Proximal	3.66803	18.02990	HepG2	DDX3X
chr6	86352547	86352626	-	5'-UTR,intron-Distal	3.84785	23.48858	K562	DDX3X
chr6	86352657	86352721	-	5'-UTR,intron-Distal,intron-Proximal	5.10724	20.88404	K562	DDX6
chr6	86352627	86352724	-	5'-UTR,intron-Distal,intron-Proximal	4.35930	33.90480	K562	FAM120A
chr6	86352759	86352867	-	5'-UTR,intron-Distal,intron-Proximal	5.62481	20.11142	K562	GTF2F1
chr6	86352828	86352887	-	5'-UTR,intron-Distal	3.89105	6.33361	K562	DDX21
chr6	86352917	86352969	-	5'-UTR,intron-Distal	7.69675	61.17135	HepG2	PRPF4
chr6	86352659	86352726	-	5'-UTR,intron-Distal,intron-Proximal	3.00992	6.64956	K562	RBM15
chr6	86352853	86352898	-	5'-UTR,intron-Distal	3.52339	7.25505	K562	FASTKD2
chr6	86352849	86352862	-	5'-UTR,intron-Distal	4.87219	5.74291	HepG2	FAM120A
chr6	86351144	86351171	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.53555	5.18300	K562	SRSF1
chr6	86328618	86328658	-	CDS,intron-Distal,intron-Proximal	3.43214	7.93794	HepG2	BCLAF1
chr6	86329116	86329192	-	CDS,intron-Distal,intron-Proximal	3.18584	7.83986	K562	SF3B4
chr6	86324995	86325066	-	CDS,intron-Distal,intron-Proximal	3.11430	9.38233	K562	ZNF622
chr6	86328561	86328586	-	CDS,intron-Distal	3.36900	8.25459	HepG2	G3BP1
chr6	86350163	86350194	-	CDS,intron-Distal,intron-Proximal	3.75199	3.80348	K562	ZC3H11A
chr6	86328582	86328607	-	CDS,intron-Distal	3.27056	9.33743	HepG2	BCLAF1
chr6	86324799	86324861	-	CDS,intron-Distal	4.49878	4.53069	HepG2	CDC40
chr6	86350162	86350181	-	CDS,intron-Distal,intron-Proximal	3.28503	5.00751	HepG2	BCLAF1
chr6	86328564	86328583	-	CDS,intron-Distal	3.39718	10.17838	K562	ZNF622
chr6	86324989	86325061	-	CDS,intron-Distal,intron-Proximal	3.03438	10.73945	HepG2	BCLAF1
chr6	86350246	86350290	-	CDS,intron-Distal,intron-Proximal	3.42814	4.29829	K562	U2AF2
chr6	86332199	86332272	-	CDS,intron-Distal,intron-Proximal	3.65698	12.60692	HepG2	BCLAF1
chr6	86351009	86351056	-	CDS,intron-Distal,intron-Proximal	3.17486	6.09950	HepG2	BCLAF1
chr6	86351009	86351022	-	CDS,intron-Distal,intron-Proximal	3.94572	3.37563	K562	U2AF2
chr6	86324691	86324698	-	CDS,intron-Distal,intron-Proximal	3.40111	4.63311	K562	AQR
chr6	86328522	86328602	-	CDS,intron-Distal,intron-Proximal	3.19900	5.62208	HepG2	PRPF8
chr6	86332199	86332266	-	CDS,intron-Distal,intron-Proximal	3.12690	3.24162	HepG2	G3BP1
chr6	86322633	86322764	-	CDS,intron-Distal,intron-Proximal	3.10032	11.46637	K562	KHSRP
chr6	86350967	86351020	-	CDS,intron-Distal,intron-Proximal	3.59868	4.65388	K562	PRPF8
chr6	86349982	86350047	-	CDS,intron-Distal,intron-Proximal	3.25344	9.80919	HepG2	BCLAF1
chr6	86328983	86329017	-	CDS,intron-Distal,intron-Proximal	3.57387	7.83567	HepG2	BCLAF1
chr6	86324976	86325043	-	CDS,intron-Distal,intron-Proximal	4.53086	7.37668	K562	FXR2
chr6	86324998	86325063	-	CDS,intron-Distal,intron-Proximal	3.38096	11.56154	K562	UCHL5
chr6	86346960	86346993	-	CDS,intron-Distal,intron-Proximal	4.47584	4.55944	K562	ZNF622
chr6	86346689	86346790	-	CDS,intron-Distal,intron-Proximal	3.39072	9.67260	HepG2	BCLAF1
chr6	86328961	86329012	-	CDS,intron-Distal,intron-Proximal	4.06748	5.62208	HepG2	PRPF8
chr6	86329092	86329161	-	CDS,intron-Distal,intron-Proximal	3.62924	14.19895	K562	AQR
chr6	86346959	86347074	-	CDS,intron-Distal,intron-Proximal	3.10557	5.00238	K562	SRSF1
chr6	86324770	86324832	-	CDS,intron-Distal	3.36094	15.12957	K562	ZRANB2
chr6	86350257	86350282	-	CDS,intron-Distal	3.23440	3.94979	HepG2	BCLAF1
chr6	86329101	86329123	-	CDS,intron-Distal	3.20210	3.07653	K562	ZNF622
chr6	86328531	86328582	-	CDS,intron-Distal,intron-Proximal	3.64468	12.82134	HepG2	BCLAF1
chr6	86351106	86351146	-	CDS,intron-Distal	4.66530	4.78529	HepG2	BCLAF1
chr6	86324685	86324877	-	CDS,intron-Distal,intron-Proximal	3.07054	20.08584	K562	UCHL5
chr6	86351621	86351648	-	intron-Distal	3.90269	6.28577	HepG2	FAM120A
chr6	86349825	86349884	-	intron-Distal,intron-Proximal	5.93587	17.44701	K562	KHSRP
chr6	86323664	86323706	-	intron-Distal	4.83448	6.94732	K562	KHSRP
chr6	86352169	86352183	-	intron-Distal	4.34569	4.14518	HepG2	GTF2F1
chr6	86352148	86352216	-	intron-Distal	5.92193	16.59395	K562	CSTF2T
chr6	86352167	86352185	-	intron-Distal	4.46738	4.01425	K562	AKAP8L
chr6	86352351	86352368	-	intron-Distal	4.23920	3.86455	HepG2	GTF2F1
chr6	86352334	86352424	-	intron-Distal	4.41341	8.59510	K562	EWSR1
chr6	86351816	86351891	-	intron-Distal	4.11806	4.71513	K562	NONO
chr6	86352155	86352181	-	intron-Distal	3.52744	4.52939	HepG2	PRPF4
chr6	86351594	86351661	-	intron-Distal	5.32265	10.44148	K562	EWSR1
chr6	86352329	86352433	-	intron-Distal	3.41394	5.42955	K562	FUS
chr6	86352342	86352381	-	intron-Distal	4.29160	3.94554	K562	XRN2
chr6	86351740	86351816	-	intron-Distal	3.52872	8.35866	K562	NONO
chr6	86352333	86352406	-	intron-Distal	3.75905	6.32455	K562	NONO
chr6	86351557	86351603	-	intron-Distal	4.53019	4.48497	K562	NONO
chr6	86352341	86352418	-	intron-Distal	4.11381	4.75435	K562	EFTUD2
chr6	86351958	86352067	-	intron-Distal	4.29254	4.25090	K562	IGF2BP2
chr6	86351585	86351659	-	intron-Distal	5.15950	16.64760	K562	CSTF2T
chr6	86351741	86351804	-	intron-Distal	5.72694	15.46130	K562	CSTF2T
chr6	86351894	86351958	-	intron-Distal	4.16474	12.70022	HepG2	CSTF2T
chr6	86333210	86333283	-	intron-Distal	3.96318	4.25105	HepG2	HNRNPC
chr6	86351712	86351799	-	intron-Distal	5.48182	9.89179	K562	EWSR1
chr6	86346864	86346917	-	intron-Distal,intron-Proximal	4.96906	5.02942	K562	EFTUD2
chr6	86351961	86352016	-	intron-Distal	5.53613	10.52764	K562	CSTF2T
chr6	86351595	86351654	-	intron-Distal	4.53984	6.63735	K562	GTF2F1
chr6	86351958	86352078	-	intron-Distal	4.97793	25.79187	HepG2	CSTF2T
chr6	86352256	86352294	-	intron-Distal	3.50511	4.84557	HepG2	CSTF2T
chr6	86323636	86323664	-	intron-Distal	3.45036	7.84449	K562	KHSRP
chr6	86351985	86352058	-	intron-Distal	4.34297	9.43936	K562	EWSR1
chr6	86328205	86328248	-	intron-Distal	3.80172	4.93809	HepG2	HNRNPC
chr6	86352257	86352303	-	intron-Distal	4.02040	7.49772	K562	TIA1
chr6	86335950	86336011	-	intron-Distal	3.00253	4.81136	K562	KHSRP
chr6	86350529	86350648	-	intron-Distal	3.38034	3.68481	HepG2	HNRNPM
chr6	86332041	86332100	-	intron-Distal	3.92973	14.86835	K562	EFTUD2
chr6	86328433	86328477	-	intron-Distal,intron-Proximal	4.16070	3.49003	K562	PRPF8
chr6	86351907	86352022	-	intron-Distal	4.24787	6.16184	K562	XRN2
chr6	86351596	86351617	-	intron-Distal	4.82446	4.38162	K562	DDX52
chr6	86351958	86352042	-	intron-Distal	4.17166	6.94297	K562	DDX51
chr6	86329906	86329979	-	intron-Distal	4.21650	5.93718	K562	HNRNPC
chr6	86351610	86351663	-	intron-Distal	3.85615	3.84109	HepG2	PCBP2
chr6	86351790	86351883	-	intron-Distal	3.98152	3.84001	K562	HNRNPM
chr6	86352170	86352199	-	intron-Distal	4.52972	4.70758	K562	DHX30
chr6	86351688	86351736	-	intron-Distal	4.18996	3.54147	K562	HNRNPM
chr6	86351602	86351670	-	intron-Distal	4.70467	8.49573	K562	FASTKD2
chr6	86351883	86351960	-	intron-Distal	3.75342	3.10641	K562	HNRNPM
chr6	86332027	86332096	-	intron-Distal	3.05564	5.01731	HepG2	HNRNPC
chr6	86352170	86352201	-	intron-Distal	3.30561	3.64169	K562	XRN2
chr6	86334370	86334397	-	intron-Distal	3.56687	4.93120	K562	KHSRP
chr6	86351794	86351849	-	intron-Distal	4.26593	3.07980	HepG2	HNRNPM
chr6	86329909	86329983	-	intron-Distal	3.24966	5.39926	HepG2	HNRNPC
chr6	86334469	86334490	-	intron-Distal	3.23148	4.10408	K562	KHSRP
chr6	86333597	86333661	-	intron-Distal,intron-Proximal	4.30907	5.44709	K562	KHSRP
chr6	86351615	86351663	-	intron-Distal	4.79760	5.93727	HepG2	CSTF2T
chr6	86352351	86352420	-	intron-Distal	6.09305	19.43320	K562	CSTF2T
chr6	86351889	86351932	-	intron-Distal	4.38989	3.86368	HepG2	HNRNPM
chr6	86352395	86352454	-	intron-Distal	3.33115	3.04392	K562	AQR
chr6	86328248	86328267	-	intron-Distal	3.59172	3.63132	HepG2	HNRNPC
chr6	86352027	86352048	-	intron-Distal	4.82564	6.62861	HepG2	FAM120A
chr6	86351596	86351659	-	intron-Distal	5.46854	11.65970	HepG2	GTF2F1
chr6	86351344	86351406	-	intron-Distal	3.45448	9.43761	K562	CSTF2T
chr6	86351603	86351648	-	intron-Distal	3.02726	3.26639	K562	NONO
chr6	86351724	86351750	-	intron-Distal	3.97248	5.59743	K562	DROSHA
chr6	86352116	86352218	-	intron-Distal	6.09774	11.95005	K562	NONO
chr6	86334439	86334588	-	intron-Distal	3.29680	3.12625	HepG2	QKI
chr6	86352157	86352222	-	intron-Distal	4.03366	15.48951	HepG2	CSTF2T
chr6	86352253	86352309	-	intron-Distal	4.82558	5.40320	K562	NONO
chr6	86336314	86336389	-	intron-Distal	4.67089	5.37406	HepG2	HNRNPM
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for SYNCRIP is not avaliable on ENCORE database.

Diffrential Expression

4,739 differentially expressed genes after Knockdown/Knockout SYNCRIP protein.

109 RBPs can affect the levels of SYNCRIP.

4,739 differentially expressed genes after Knockdown/Knockout SYNCRIP protein :

Only display 100 entries as example. Please click "View All" button to see all 4,739 entries.

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
DPM1	ENSG00000000419.8	1159.74470	952.47600	0.28400	2.24150	1.50140	K562	SYNCRIP
FUCA2	ENSG00000001036.9	1820.83490	1515.10280	0.26510	2.35150	1.59420	K562	SYNCRIP
GCLC	ENSG00000001084.6	417.40180	286.29840	0.54380	3.62080	2.68240	K562	SYNCRIP
NFYA	ENSG00000001167.10	1352.71770	898.36170	0.59040	6.40200	5.14590	K562	SYNCRIP
SEMA3F	ENSG00000001617.7	46.49880	94.21220	-1.01870	3.39290	2.48470	K562	SYNCRIP
CYP51A1	ENSG00000001630.11	1527.47650	2786.03720	-0.86710	12.44810	10.71250	K562	SYNCRIP
LAP3	ENSG00000002549.8	2327.44350	1691.94650	0.46000	6.44200	5.18130	K562	SYNCRIP
LASP1	ENSG00000002834.13	4224.61540	5844.74300	-0.46830	8.09450	6.68250	K562	SYNCRIP
DBNDD1	ENSG00000003249.9	255.92370	353.98920	-0.46800	2.63140	1.83310	K562	SYNCRIP
CFLAR	ENSG00000003402.15	1407.30630	2080.66900	-0.56410	8.91360	7.43650	K562	SYNCRIP
POLDIP2	ENSG00000004142.7	3076.00570	2345.72780	0.39090	5.28800	4.14420	K562	SYNCRIP
PLXND1	ENSG00000004399.8	373.70700	569.99700	-0.60900	5.57910	4.40530	K562	SYNCRIP
AK2	ENSG00000004455.12	13509.75150	10528.21720	0.35960	5.55890	4.38780	K562	SYNCRIP
RBM6	ENSG00000004534.10	2367.58810	1960.14540	0.27240	2.68750	1.88130	K562	SYNCRIP
PDK4	ENSG00000004799.7	1.90950	16.75330	-3.13320	2.94250	2.09440	K562	SYNCRIP
SLC25A13	ENSG00000004864.9	1632.38990	1330.22150	0.29520	2.74690	1.93040	K562	SYNCRIP
ST7	ENSG00000004866.14	1362.75860	927.47420	0.55510	2.99550	2.13610	K562	SYNCRIP
CDC27	ENSG00000004897.7	4048.71270	2495.31840	0.69810	8.88750	7.41330	K562	SYNCRIP
SLC4A1	ENSG00000004939.9	381.88910	2056.84850	-2.42920	111.75330	108.07930	K562	SYNCRIP
HCCS	ENSG00000004961.10	896.32840	687.31580	0.38300	3.26560	2.37430	K562	SYNCRIP
DVL2	ENSG00000004975.7	666.99890	957.41030	-0.52150	5.77490	4.58120	K562	SYNCRIP
POLR2J	ENSG00000005075.11	3040.88590	2164.21620	0.49050	2.82780	1.99860	K562	SYNCRIP
DHX33	ENSG00000005100.8	1108.70910	729.42780	0.60390	7.83540	6.44150	K562	SYNCRIP
RPAP3	ENSG00000005175.5	1957.92910	1410.05180	0.47350	6.48560	5.22050	K562	SYNCRIP
ACSM3	ENSG00000005187.7	655.89920	1589.62310	-1.27710	34.28340	31.76160	K562	SYNCRIP
AC004381.6	ENSG00000005189.15	589.27140	983.23640	-0.73860	4.91470	3.81290	K562	SYNCRIP
CIAPIN1	ENSG00000005194.10	1481.68930	984.37100	0.58990	8.62970	7.17730	K562	SYNCRIP
SPPL2B	ENSG00000005206.12	409.39990	601.88330	-0.55600	4.99100	3.88090	K562	SYNCRIP
PRKAR2B	ENSG00000005249.8	4780.34390	3245.30690	0.55870	10.89100	9.26460	K562	SYNCRIP
MSL3	ENSG00000005302.13	1121.90810	783.80770	0.51730	5.97050	4.75520	K562	SYNCRIP
GCFC2	ENSG00000005436.9	451.40960	334.33370	0.43300	2.82460	1.99590	K562	SYNCRIP
WDR54	ENSG00000005448.12	41.14640	106.89150	-1.37730	5.83610	4.63540	K562	SYNCRIP
IBTK	ENSG00000005700.10	1096.12670	896.64950	0.28970	2.30990	1.55940	K562	SYNCRIP
ZNF195	ENSG00000005801.12	1186.55090	819.85940	0.53320	6.54830	5.27700	K562	SYNCRIP
MYCBP2	ENSG00000005810.13	1378.62240	1089.30340	0.33970	3.26460	2.37350	K562	SYNCRIP
ZFX	ENSG00000005889.11	631.71420	456.77010	0.46770	3.86510	2.89300	K562	SYNCRIP
ITGA2B	ENSG00000005961.13	117.67590	344.01020	-1.54760	14.23600	12.37630	K562	SYNCRIP
MAP3K14	ENSG00000006062.9	109.95880	164.28320	-0.57920	2.22410	1.48670	K562	SYNCRIP
ZNF263	ENSG00000006194.6	808.25020	611.63300	0.40200	3.41110	2.50010	K562	SYNCRIP
TNFRSF12A	ENSG00000006327.9	113.60400	261.32410	-1.20180	9.80170	8.24960	K562	SYNCRIP
JHDM1D	ENSG00000006459.6	528.88420	699.51900	-0.40340	3.16490	2.28740	K562	SYNCRIP
AGK	ENSG00000006530.11	1817.38930	1535.97570	0.24260	2.08780	1.37390	K562	SYNCRIP
DBF4	ENSG00000006634.3	2663.51080	1816.33310	0.55220	9.36070	7.84560	K562	SYNCRIP
IFRD1	ENSG00000006652.9	1525.12150	1119.77040	0.44560	5.38340	4.23110	K562	SYNCRIP
PAF1	ENSG00000006712.10	1393.52240	1117.38130	0.31850	2.95600	2.10490	K562	SYNCRIP
ELAC2	ENSG00000006744.14	2083.32830	1533.40330	0.44210	5.88000	4.67400	K562	SYNCRIP
SCIN	ENSG00000006747.10	183.22570	761.82690	-2.05580	49.55330	46.80360	K562	SYNCRIP
PRSS21	ENSG00000007038.6	645.03300	868.67280	-0.42940	3.99470	3.00400	K562	SYNCRIP
MARK4	ENSG00000007047.10	408.62520	599.30150	-0.55250	4.95210	3.84680	K562	SYNCRIP
TRAPPC6A	ENSG00000007255.6	26.76810	77.94410	-1.54190	5.19690	4.06370	K562	SYNCRIP
TKTL1	ENSG00000007350.12	38.35480	117.06260	-1.60980	7.82720	6.43420	K562	SYNCRIP
RPUSD1	ENSG00000007376.3	442.98090	267.30230	0.72870	5.25150	4.11100	K562	SYNCRIP
RHBDF1	ENSG00000007384.11	125.23510	339.80840	-1.44010	15.74350	13.81770	K562	SYNCRIP
LUC7L	ENSG00000007392.12	822.29320	1049.97460	-0.35260	3.11100	2.23880	K562	SYNCRIP
BAIAP3	ENSG00000007516.9	17.87170	98.25860	-2.45890	11.92370	10.21910	K562	SYNCRIP
DNAJC11	ENSG00000007923.11	3509.63770	2620.80300	0.42120	6.10490	4.87650	K562	SYNCRIP
MYLIP	ENSG00000007944.10	505.49590	904.55960	-0.83950	12.41890	10.68540	K562	SYNCRIP
SPAG9	ENSG00000008294.16	2066.21530	2569.95650	-0.31480	3.38890	2.48170	K562	SYNCRIP
CELSR3	ENSG00000008300.10	82.16320	143.72140	-0.80670	3.33900	2.43750	K562	SYNCRIP
SS18L2	ENSG00000008324.6	293.65560	210.76200	0.47840	2.48320	1.70720	K562	SYNCRIP
MGST1	ENSG00000008394.8	672.47810	442.36960	0.60410	6.12770	4.89840	K562	SYNCRIP
PKD1	ENSG00000008710.13	700.59590	1006.72770	-0.52300	2.47190	1.69750	K562	SYNCRIP
MED24	ENSG00000008838.13	2886.40280	2379.59200	0.27850	2.87300	2.03630	K562	SYNCRIP
RPS20	ENSG00000008988.5	11390.99720	13463.79860	-0.24120	2.83290	2.00240	K562	SYNCRIP
CSDE1	ENSG00000009307.11	17854.18570	14663.80830	0.28390	3.75150	2.79480	K562	SYNCRIP
REV3L	ENSG00000009413.11	996.10420	804.20440	0.30860	2.42320	1.65520	K562	SYNCRIP
TENM1	ENSG00000009694.9	523.67730	1273.25120	-1.28180	31.07420	28.65540	K562	SYNCRIP
FAM76A	ENSG00000009780.11	196.21620	134.31940	0.54670	2.27360	1.52810	K562	SYNCRIP
POMT2	ENSG00000009830.7	386.04620	267.86050	0.52720	3.46900	2.54970	K562	SYNCRIP
VTA1	ENSG00000009844.11	1815.45490	1373.59710	0.40230	2.79590	1.97190	K562	SYNCRIP
MLXIPL	ENSG00000009950.11	69.29600	195.09820	-1.49340	10.87890	9.25400	K562	SYNCRIP
BAZ1B	ENSG00000009954.6	7825.24140	6612.44650	0.24290	2.73940	1.92420	K562	SYNCRIP
SPRTN	ENSG00000010072.11	551.94410	438.11260	0.33310	2.08490	1.37160	K562	SYNCRIP
METTL13	ENSG00000010165.15	1513.90120	1036.52590	0.54640	7.55740	6.18960	K562	SYNCRIP
NCAPD2	ENSG00000010292.8	3873.37730	4901.81540	-0.33970	4.41310	3.37040	K562	SYNCRIP
GIPR	ENSG00000010310.4	207.83130	608.32810	-1.54940	27.42650	25.09090	K562	SYNCRIP
NISCH	ENSG00000010322.11	944.68610	1212.84800	-0.36050	3.41110	2.50010	K562	SYNCRIP
STAB1	ENSG00000010327.6	31.54190	61.58450	-0.96530	2.18020	1.45040	K562	SYNCRIP
IDS	ENSG00000010404.13	535.51070	958.49980	-0.83990	12.91480	11.14920	K562	SYNCRIP
ZNF200	ENSG00000010539.7	312.65600	199.81290	0.64580	4.15970	3.14720	K562	SYNCRIP
LRRC23	ENSG00000010626.10	29.27830	68.65190	-1.22950	3.28640	2.39210	K562	SYNCRIP
TCEB3	ENSG00000011007.8	3313.74170	2065.06880	0.68220	12.41180	10.68030	K562	SYNCRIP
CLCN6	ENSG00000011021.17	783.44850	997.86500	-0.34900	2.90900	2.06540	K562	SYNCRIP
MRC2	ENSG00000011028.9	461.67780	727.03870	-0.65510	7.31670	5.96610	K562	SYNCRIP
NME2	ENSG00000011052.17	132.21570	309.56100	-1.22730	3.10630	2.23460	K562	SYNCRIP
BTBD7	ENSG00000011114.10	515.57150	404.72510	0.34910	2.17540	1.44660	K562	SYNCRIP
ABHD5	ENSG00000011198.3	1174.20550	1527.45290	-0.37940	3.95810	2.97320	K562	SYNCRIP
AKAP8L	ENSG00000011243.13	2009.56190	2403.34810	-0.25820	2.38420	1.62250	K562	SYNCRIP
MBTD1	ENSG00000011258.11	806.77370	592.98450	0.44410	4.00940	3.01590	K562	SYNCRIP
UTP18	ENSG00000011260.9	681.71880	539.24590	0.33810	2.32390	1.57100	K562	SYNCRIP
LARS2	ENSG00000011376.5	1752.26910	1430.24720	0.29290	2.71920	1.90750	K562	SYNCRIP
PLAUR	ENSG00000011422.7	135.47490	208.06140	-0.61900	2.97820	2.12250	K562	SYNCRIP
CEP68	ENSG00000011523.9	330.21810	451.89070	-0.45260	2.91960	2.07460	K562	SYNCRIP
MAP4K3	ENSG00000011566.10	537.38560	406.31810	0.40320	2.28380	1.53700	K562	SYNCRIP
ERCC1	ENSG00000012061.11	947.92040	1382.99000	-0.54500	7.20750	5.86670	K562	SYNCRIP
CD22	ENSG00000012124.10	69.47000	212.30010	-1.61160	12.97630	11.20210	K562	SYNCRIP
ELOVL5	ENSG00000012660.9	3834.51940	4921.55430	-0.36010	4.95230	3.84680	K562	SYNCRIP
ALOX5	ENSG00000012779.6	17.99510	43.87900	-1.28590	2.44030	1.67000	K562	SYNCRIP
CALCOCO1	ENSG00000012822.11	354.83000	652.14270	-0.87810	4.77470	3.68970	K562	SYNCRIP
UBR7	ENSG00000012963.9	1340.66250	1093.01130	0.29450	2.50460	1.72510	K562	SYNCRIP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

109 RBPs can affect the gene expression of SYNCRIP :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SYNCRIP	ENSG00000135316.13	2849.93040	3523.23390	-0.30600	4.97760	3.97550	HepG2	AKAP8L
SYNCRIP	ENSG00000135316.13	3709.75720	5669.31490	-0.61180	20.66210	19.09940	HepG2	AUH
SYNCRIP	ENSG00000135316.13	2538.68190	3929.70070	-0.63030	6.03780	4.62800	HepG2	BCCIP
SYNCRIP	ENSG00000135316.13	2145.80570	3414.84810	-0.67030	7.53790	6.14050	HepG2	BCLAF1
SYNCRIP	ENSG00000135316.13	3687.14590	6939.47690	-0.91230	21.06280	19.64860	HepG2	BOP1
SYNCRIP	ENSG00000135316.13	4135.61330	4965.94520	-0.26400	2.51390	1.77630	HepG2	CALR
SYNCRIP	ENSG00000135316.13	2763.79290	3506.00230	-0.34320	7.98440	6.96710	HepG2	CKAP4
SYNCRIP	ENSG00000135316.13	1846.92090	2620.08330	-0.50450	2.87240	2.09280	HepG2	CNOT7
SYNCRIP	ENSG00000135316.13	3419.65950	6370.81360	-0.89760	18.38280	16.79470	HepG2	CPSF6
SYNCRIP	ENSG00000135316.13	3259.48790	5001.70880	-0.61780	25.08530	23.27840	HepG2	DAZAP1
SYNCRIP	ENSG00000135316.13	2685.15960	3243.23780	-0.27240	4.87040	3.80480	HepG2	DDX19B
SYNCRIP	ENSG00000135316.13	2819.67470	3396.13220	-0.26840	3.36490	2.08690	HepG2	DDX1
SYNCRIP	ENSG00000135316.13	1996.81890	2708.94320	-0.44000	2.21010	1.59680	HepG2	DDX21
SYNCRIP	ENSG00000135316.13	2570.38830	3577.00770	-0.47680	4.62080	3.82760	HepG2	DDX3X
SYNCRIP	ENSG00000135316.13	2965.54950	3863.58410	-0.38160	2.43300	1.70350	HepG2	DDX55
SYNCRIP	ENSG00000135316.13	2241.52500	3072.81790	-0.45510	3.70500	2.99910	HepG2	DDX6
SYNCRIP	ENSG00000135316.13	2451.79580	3211.87420	-0.38960	4.20410	3.00730	HepG2	DHX30
SYNCRIP	ENSG00000135316.13	2817.49500	3354.99800	-0.25190	3.52600	2.77590	HepG2	DKC1
SYNCRIP	ENSG00000135316.13	2180.67000	3330.14130	-0.61080	14.81140	13.29440	HepG2	DNAJC21
SYNCRIP	ENSG00000135316.13	2312.97230	3300.54430	-0.51300	16.49780	15.03310	HepG2	DNAJC2
SYNCRIP	ENSG00000135316.13	2275.66050	2953.88080	-0.37630	3.00830	2.39070	HepG2	EIF2S1
SYNCRIP	ENSG00000135316.13	1893.31400	3264.34020	-0.78590	9.56060	8.38260	HepG2	EIF4A3
SYNCRIP	ENSG00000135316.13	4176.87060	3178.37980	0.39400	2.40930	1.76640	HepG2	EIF4B
SYNCRIP	ENSG00000135316.13	3366.89810	4726.69040	-0.48940	6.17650	4.98250	HepG2	EIF4G2
SYNCRIP	ENSG00000135316.13	4908.50310	6509.18960	-0.40720	9.08640	8.10150	HepG2	ETF1
SYNCRIP	ENSG00000135316.13	2443.45880	3426.73220	-0.48790	6.87450	5.56210	HepG2	EWSR1
SYNCRIP	ENSG00000135316.13	1676.36310	2236.22170	-0.41570	5.31100	3.66050	HepG2	FAM120A
SYNCRIP	ENSG00000135316.13	2469.70580	3567.89420	-0.53070	3.78440	2.48300	HepG2	FUS
SYNCRIP	ENSG00000135316.13	3700.68240	7221.80190	-0.96460	16.75180	15.30210	HepG2	GPKOW
SYNCRIP	ENSG00000135316.13	2751.32260	3347.94350	-0.28310	4.31760	3.11420	HepG2	HDGF
SYNCRIP	ENSG00000135316.13	2034.90140	3362.04280	-0.72440	13.58450	12.32450	HepG2	HNRNPA1
SYNCRIP	ENSG00000135316.13	1710.85910	3739.58770	-1.12820	29.39410	27.42670	HepG2	HNRNPC
SYNCRIP	ENSG00000135316.13	3343.76370	5048.57690	-0.59440	7.88210	6.74970	HepG2	HNRNPF
SYNCRIP	ENSG00000135316.13	3321.97580	4556.28140	-0.45580	15.68530	14.19760	HepG2	HNRNPL
SYNCRIP	ENSG00000135316.13	3575.05950	6891.89970	-0.94690	19.16840	17.73630	HepG2	HNRNPLL
SYNCRIP	ENSG00000135316.13	2211.04180	3714.86850	-0.74860	27.35240	25.60710	HepG2	HNRNPU
SYNCRIP	ENSG00000135316.13	3167.47720	4971.46880	-0.65030	6.92940	5.82890	HepG2	IGF2BP1
SYNCRIP	ENSG00000135316.13	2699.94330	3794.62600	-0.49100	17.08210	15.44380	HepG2	ILF2
SYNCRIP	ENSG00000135316.13	2703.66010	3205.61180	-0.24570	4.37470	3.10420	HepG2	KIF1C
SYNCRIP	ENSG00000135316.13	4284.88870	7028.86740	-0.71400	6.56920	5.03870	HepG2	MTPAP
SYNCRIP	ENSG00000135316.13	4076.48390	4959.66510	-0.28290	2.35730	1.65430	HepG2	NOL12
SYNCRIP	ENSG00000135316.13	5019.53490	6110.99560	-0.28390	2.56570	1.84370	HepG2	NSUN2
SYNCRIP	ENSG00000135316.13	4241.67300	3059.36860	0.47130	12.02780	10.90540	HepG2	PCBP1
SYNCRIP	ENSG00000135316.13	2618.30340	3313.37690	-0.33970	5.01280	4.04960	HepG2	PPIL4
SYNCRIP	ENSG00000135316.13	2638.44340	4734.33590	-0.84350	19.60980	18.21700	HepG2	PUF60
SYNCRIP	ENSG00000135316.13	2431.26260	3571.83540	-0.55500	17.16110	15.86170	HepG2	PUS1
SYNCRIP	ENSG00000135316.13	3602.61520	5128.45940	-0.50950	8.00070	6.64700	HepG2	RBM15
SYNCRIP	ENSG00000135316.13	4675.47790	5440.46600	-0.21860	2.75930	2.24210	HepG2	RBM22
SYNCRIP	ENSG00000135316.13	3704.94550	3226.85350	0.19920	2.62940	2.02660	HepG2	RECQL
SYNCRIP	ENSG00000135316.13	3522.04370	5437.62930	-0.62660	6.87540	5.86890	HepG2	RPLP0
SYNCRIP	ENSG00000135316.13	2277.63160	3308.29200	-0.53860	16.38620	15.01130	HepG2	SAFB2
SYNCRIP	ENSG00000135316.13	2637.48870	6821.61250	-1.37090	43.77730	41.41950	HepG2	SF3B1
SYNCRIP	ENSG00000135316.13	3760.61260	4539.25310	-0.27150	6.01420	5.04130	HepG2	SLBP
SYNCRIP	ENSG00000135316.13	2357.10130	3322.41150	-0.49520	3.50760	2.41480	HepG2	SMNDC1
SYNCRIP	ENSG00000135316.13	4068.29010	7590.24250	-0.89970	9.17220	7.75510	HepG2	SNRNP70
SYNCRIP	ENSG00000135316.13	5049.40890	6144.78500	-0.28320	6.06240	5.39980	HepG2	SRFBP1
SYNCRIP	ENSG00000135316.13	4969.97240	3382.95810	0.55490	18.34130	17.34900	HepG2	SRSF1
SYNCRIP	ENSG00000135316.13	4192.68640	4674.32870	-0.15690	1.98270	1.44150	HepG2	SRSF5
SYNCRIP	ENSG00000135316.13	2954.07760	4959.84640	-0.74760	11.55540	10.30020	HepG2	SRSF7
SYNCRIP	ENSG00000135316.13	3331.80940	2752.26920	0.27560	4.65120	3.97000	HepG2	SRSF9
SYNCRIP	ENSG00000135316.13	3951.73100	5335.09120	-0.43300	11.60140	10.69360	HepG2	SSB
SYNCRIP	ENSG00000135316.13	2305.53580	3846.34040	-0.73840	8.66940	7.58140	HepG2	SUPV3L1
SYNCRIP	ENSG00000135316.13	3536.46630	3040.90410	0.21770	2.39990	1.87140	HepG2	TAF15
SYNCRIP	ENSG00000135316.13	3678.79180	6717.49930	-0.86870	18.21530	16.64630	HepG2	TARDBP
SYNCRIP	ENSG00000135316.13	2003.78410	2578.19030	-0.36360	2.29280	1.37880	HepG2	TFIP11
SYNCRIP	ENSG00000135316.13	1576.20560	3609.92630	-1.19550	42.49060	40.96710	HepG2	TIAL1
SYNCRIP	ENSG00000135316.13	2707.18720	3641.94150	-0.42790	9.76360	8.80300	HepG2	TRIM56
SYNCRIP	ENSG00000135316.13	1460.54950	2272.28970	-0.63760	7.11900	5.89390	HepG2	UCHL5
SYNCRIP	ENSG00000135316.13	3850.09590	4464.80160	-0.21370	3.25830	2.51170	HepG2	UPF1
SYNCRIP	ENSG00000135316.13	2296.75690	3522.60240	-0.61700	4.35650	3.07900	HepG2	UPF2
SYNCRIP	ENSG00000135316.13	3492.43940	4310.59870	-0.30370	5.96880	5.14550	HepG2	UTP3
SYNCRIP	ENSG00000135316.13	2150.14190	3786.29430	-0.81640	12.00170	10.51460	HepG2	XRN2
SYNCRIP	ENSG00000135316.13	2682.26480	3803.51470	-0.50390	16.17090	14.77000	HepG2	ZC3H8
SYNCRIP	ENSG00000135316.13	4401.37010	4910.43460	-0.15790	2.53020	2.00080	HepG2	ZNF622
SYNCRIP	ENSG00000135316.13	8380.51030	11411.94110	-0.44540	5.54170	4.76060	K562	AQR
SYNCRIP	ENSG00000135316.13	5960.05290	7118.78970	-0.25630	3.11390	1.69940	K562	BCCIP
SYNCRIP	ENSG00000135316.13	5127.41030	6879.57220	-0.42410	12.05790	10.03080	K562	BCLAF1
SYNCRIP	ENSG00000135316.13	6051.96850	10309.27490	-0.76850	13.97200	11.96610	K562	BOP1
SYNCRIP	ENSG00000135316.13	9450.22940	12549.52310	-0.40920	3.02730	1.53060	K562	BUD13
SYNCRIP	ENSG00000135316.13	8976.09210	14743.03440	-0.71590	5.24740	3.72970	K562	CNOT7
SYNCRIP	ENSG00000135316.13	7565.17380	10961.93100	-0.53510	10.50180	8.95990	K562	CPSF6
SYNCRIP	ENSG00000135316.13	4106.39240	5219.18140	-0.34600	5.92000	4.29400	K562	CSTF2
SYNCRIP	ENSG00000135316.13	6926.52070	8371.31600	-0.27330	4.97990	3.32670	K562	DDX21
SYNCRIP	ENSG00000135316.13	3303.34770	4950.24890	-0.58360	10.47790	8.31620	K562	DDX3X
SYNCRIP	ENSG00000135316.13	17577.80910	13895.77850	0.33900	7.88590	6.86220	K562	DDX47
SYNCRIP	ENSG00000135316.13	4048.39780	5018.88900	-0.31000	4.49830	2.69630	K562	DDX6
SYNCRIP	ENSG00000135316.13	8721.29710	7637.30570	0.19140	2.14390	1.38410	K562	DKC1
SYNCRIP	ENSG00000135316.13	4399.89080	5437.38460	-0.30540	5.36800	3.65660	K562	EIF2S1
SYNCRIP	ENSG00000135316.13	6725.16550	10449.59370	-0.63580	7.29220	6.20670	K562	EIF2S2
SYNCRIP	ENSG00000135316.13	5425.14990	3417.48960	0.66660	4.09880	2.84750	K562	EIF3A
SYNCRIP	ENSG00000135316.13	7774.03330	6058.94210	0.35950	2.84560	2.03830	K562	EIF3G
SYNCRIP	ENSG00000135316.13	3974.39440	5171.77450	-0.37990	4.25370	3.23630	K562	EIF4A3
SYNCRIP	ENSG00000135316.13	3891.98280	4657.45040	-0.25900	3.03930	1.81200	K562	EIF4B
SYNCRIP	ENSG00000135316.13	5210.38420	6426.50480	-0.30260	3.48080	2.03750	K562	EXOSC5
SYNCRIP	ENSG00000135316.13	7561.63130	12950.68580	-0.77630	8.04240	6.51810	K562	FIP1L1
SYNCRIP	ENSG00000135316.13	6671.61070	11153.09070	-0.74130	14.04160	12.05150	K562	FMR1
SYNCRIP	ENSG00000135316.13	5843.46920	9453.07060	-0.69400	9.76800	7.94130	K562	FTO
SYNCRIP	ENSG00000135316.13	4385.64640	5356.53090	-0.28850	3.44960	1.93120	K562	FUS
SYNCRIP	ENSG00000135316.13	8335.64710	5378.42550	0.63200	20.32750	18.79950	K562	FXR1
SYNCRIP	ENSG00000135316.13	7831.79180	5451.09050	0.52270	4.32250	3.39500	K562	G3BP2
SYNCRIP	ENSG00000135316.13	6517.93440	10466.11750	-0.68320	13.71330	11.92830	K562	GPKOW
SYNCRIP	ENSG00000135316.13	8464.42050	13926.52430	-0.71840	6.69130	5.50980	K562	GRSF1
SYNCRIP	ENSG00000135316.13	3497.28450	6104.99500	-0.80380	3.99870	3.29710	K562	HNRNPC
SYNCRIP	ENSG00000135316.13	10045.53090	12557.52550	-0.32200	3.83360	2.56280	K562	HNRNPL
SYNCRIP	ENSG00000135316.13	6581.01750	7950.63820	-0.27280	3.79100	2.74320	K562	HNRNPU
SYNCRIP	ENSG00000135316.13	11092.98880	17559.43940	-0.66260	6.19210	5.01350	K562	HSPD1
SYNCRIP	ENSG00000135316.13	5151.31570	6797.25850	-0.40000	3.10300	1.99610	K562	IGF2BP2
SYNCRIP	ENSG00000135316.13	5214.43930	6914.54580	-0.40710	4.80260	3.14410	K562	IGF2BP3
SYNCRIP	ENSG00000135316.13	6734.62580	8936.31060	-0.40810	2.84600	1.89610	K562	KRR1
SYNCRIP	ENSG00000135316.13	6267.20820	10216.02640	-0.70490	15.30280	13.15490	K562	METAP2
SYNCRIP	ENSG00000135316.13	7769.22620	9241.52590	-0.25040	4.17480	3.19890	K562	MTPAP
SYNCRIP	ENSG00000135316.13	4331.39950	5164.34640	-0.25380	2.73630	1.51540	K562	NCBP2
SYNCRIP	ENSG00000135316.13	7616.31300	10268.75450	-0.43110	8.71960	7.49770	K562	NSUN2
SYNCRIP	ENSG00000135316.13	5685.20330	8185.20450	-0.52580	2.22540	1.35760	K562	PABPN1
SYNCRIP	ENSG00000135316.13	5839.52280	8174.48340	-0.48530	5.19600	4.05370	K562	PCBP3
SYNCRIP	ENSG00000135316.13	4766.01700	6270.05880	-0.39570	5.86470	4.70230	K562	POLR2G
SYNCRIP	ENSG00000135316.13	8602.62870	14700.50120	-0.77300	7.37260	5.89720	K562	PPIG
SYNCRIP	ENSG00000135316.13	7636.42560	5711.90510	0.41880	4.13600	3.21890	K562	PRPF8
SYNCRIP	ENSG00000135316.13	3550.61940	5473.28540	-0.62430	2.54620	1.68420	K562	PSIP1
SYNCRIP	ENSG00000135316.13	7008.85120	5586.92660	0.32700	3.78800	2.51560	K562	SAFB
SYNCRIP	ENSG00000135316.13	5528.66320	9953.02620	-0.84820	9.89280	7.97120	K562	SF3B1
SYNCRIP	ENSG00000135316.13	5717.67900	9130.76920	-0.67530	2.98940	1.61020	K562	SFPQ
SYNCRIP	ENSG00000135316.13	3995.47300	4928.19910	-0.30270	3.29810	2.13380	K562	SRSF4
SYNCRIP	ENSG00000135316.13	4706.20440	6426.77180	-0.44950	5.45070	3.88850	K562	SRSF5
SYNCRIP	ENSG00000135316.13	5962.34420	7471.15450	-0.32550	5.54750	3.87700	K562	SRSF7
SYNCRIP	ENSG00000135316.13	3961.73330	5532.05250	-0.48170	2.27490	1.35890	K562	SUPV3L1
SYNCRIP	ENSG00000135316.13	4684.84930	6888.14870	-0.55610	7.11900	5.92880	K562	TARDBP
SYNCRIP	ENSG00000135316.13	4881.88440	6644.26950	-0.44470	6.94600	5.55640	K562	TIA1
SYNCRIP	ENSG00000135316.13	3293.48790	5264.66690	-0.67670	3.03900	2.05400	K562	TIAL1
SYNCRIP	ENSG00000135316.13	5274.21670	6518.85240	-0.30570	2.93180	1.79990	K562	TRA2A
SYNCRIP	ENSG00000135316.13	11151.57070	15153.81020	-0.44240	3.20710	1.68820	K562	TRIP6
SYNCRIP	ENSG00000135316.13	9246.94030	10921.34590	-0.24010	2.57940	1.35850	K562	TROVE2
SYNCRIP	ENSG00000135316.13	4220.19780	5854.14880	-0.47210	2.81320	1.78420	K562	UCHL5
SYNCRIP	ENSG00000135316.13	7135.55160	10888.13150	-0.60970	11.31220	9.98150	K562	UPF1
SYNCRIP	ENSG00000135316.13	6874.95570	9316.70630	-0.43850	4.99000	3.79880	K562	WDR3
SYNCRIP	ENSG00000135316.13	12182.76860	9687.77050	0.33050	8.49380	7.09120	K562	WDR43
SYNCRIP	ENSG00000135316.13	9710.64060	12857.06490	-0.40490	3.87790	2.82490	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SYNCRIP is not available on ENCORE database.

21 RBPs can affect the splicing of SYNCRIP :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346960	86347074			86346684	86346861	86349938	86350046	-0.24400	0.00000	0.00000	excluded	K562	SRSF1
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346960	86347074			86346684	86346861	86349938	86350046	-0.05900	0.00000	0.00000	excluded	K562	SF3B4
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346986	86347074			86346684	86346861	86349938	86350046	-0.07400	0.00000	0.00007	excluded	K562	PRPF8
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346986	86347074			86346684	86346861	86349938	86350046	-0.07300	0.00002	0.00071	excluded	HepG2	U2AF1
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86351009	86351169			86350163	86350282	86352514	86352709	0.14000	0.00000	0.00000	included	HepG2	HNRNPM
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86351009	86351169			86350163	86350282	86352514	86353003	-0.08400	0.00050	0.00782	excluded	HepG2	U2AF2
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86351009	86351204			86350163	86350282	86352514	86352709	0.05700	0.00044	0.00613	included	K562	AQR
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86328535	86328657			86324698	86325065	86332199	86332405	-0.19100	0.00000	0.00000	excluded	K562	AQR
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346960	86347074			86346684	86346861	86349938	86350038	-0.16900	0.00000	0.00000	excluded	K562	AQR
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86351009	86351169			86350163	86350282	86352514	86352709	0.06300	0.00005	0.00746	included	K562	SUPV3L1
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346986	86347074			86346684	86346861	86349938	86350046	-0.05700	0.00002	0.00062	excluded	K562	PUS1
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346960	86347074			86346684	86346861	86349938	86350046	-0.06600	0.00000	0.00000	excluded	K562	BUD13
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346986	86347074			86346684	86346861	86349938	86350046	-0.05800	0.00007	0.00618	excluded	K562	EFTUD2
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86351009	86351169			86350163	86350282	86352514	86352709	0.07400	0.00000	0.00000	included	K562	HNRNPM
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86351009	86351169			86350163	86350282	86352514	86352709	-0.07500	0.00028	0.03640	excluded	HepG2	LARP4
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346986	86347074			86346684	86346861	86349938	86350046	-0.06600	0.00108	0.02724	excluded	HepG2	SRSF1
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86351009	86351169			86350163	86350282	86352514	86352709	-0.12700	0.00003	0.00411	excluded	HepG2	TIAL1
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346960	86347074			86346684	86346861	86349938	86350046	-0.05400	0.00000	0.00003	excluded	K562	U2AF2
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346986	86347074			86346684	86346861	86349938	86350046	-0.07200	0.00003	0.00253	excluded	K562	TARDBP
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346986	86347074			86346684	86346861	86349938	86350046	-0.07900	0.00025	0.01394	excluded	K562	SF3B1
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346986	86347111			86346684	86346861	86349938	86350046	0.42800	0.00014	0.02733	included	K562	ZC3H8
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86351009	86351169			86350163	86350282	86352514	86352709	-0.10400	0.00011	0.00752	excluded	HepG2	HNRNPU
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346986	86347074			86346684	86346861	86349938	86350046	-0.05400	0.00039	0.06621	excluded	K562	NPM1
SE	SYNCRIP	ENSG00000135316.13	chr6	-	86346960	86347074			86346684	86346861	86349938	86350046	-0.08300	0.00000	0.00000	excluded	K562	HNRNPC
A3SS	SYNCRIP	ENSG00000135316.13	chr6	-	86332297	86332485			86332297	86332405	86333694	86333875	0.06100	0.00000	0.00000	longer	K562	AQR
A3SS	SYNCRIP	ENSG00000135316.13	chr6	-	86351009	86351204			86351009	86351169	86352514	86352709	0.05400	0.00000	0.00000	longer	K562	AQR
A5SS	SYNCRIP	ENSG00000135316.13	chr6	-	86346960	86347074			86346986	86347074	86346684	86346861	-0.06800	0.00000	0.00010	shorter	K562	PUS1
A5SS	SYNCRIP	ENSG00000135316.13	chr6	-	86332199	86332405			86332304	86332405	86328985	86329135	-0.09900	0.00000	0.00000	shorter	K562	ZC3H8
A5SS	SYNCRIP	ENSG00000135316.13	chr6	-	86332199	86332446			86332304	86332446	86328985	86329135	-0.05700	0.00000	0.00002	shorter	K562	FMR1
A5SS	SYNCRIP	ENSG00000135316.13	chr6	-	86332199	86332405			86332304	86332405	86328985	86329135	-0.05200	0.00004	0.01087	shorter	K562	HNRNPU
A5SS	SYNCRIP	ENSG00000135316.13	chr6	-	86346960	86347074			86346986	86347074	86346684	86346861	-0.06200	0.00001	0.00150	shorter	K562	AKAP8L
MXE	SYNCRIP	ENSG00000135316.13	chr6	-	86346986	86347074	86349938	86350038	86346684	86346861	86350163	86350341	0.43200	0.00000	0.00000	1included	K562	AQR
MXE	SYNCRIP	ENSG00000135316.13	chr6	-	86346986	86347074	86349938	86350093	86346684	86346861	86350163	86350282	0.44000	0.00000	0.00000	1included	K562	AQR
MXE	SYNCRIP	ENSG00000135316.13	chr6	-	86346960	86347074	86349938	86350046	86346684	86346861	86350163	86350282	0.11900	0.00001	0.00012	1included	K562	AQR
MXE	SYNCRIP	ENSG00000135316.13	chr6	-	86346960	86347074	86349938	86350093	86346684	86346861	86350163	86350282	0.19500	0.00000	0.00000	1included	K562	AQR
MXE	SYNCRIP	ENSG00000135316.13	chr6	-	86346960	86347074	86349938	86350038	86346684	86346861	86350163	86350341	0.19400	0.00000	0.00000	1included	K562	AQR
MXE	SYNCRIP	ENSG00000135316.13	chr6	-	86350163	86350282	86351009	86351169	86349938	86350046	86352514	86353003	-0.06800	0.00000	0.00000	2included	HepG2	U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
SYNCRIP	Product_ID: RN046PW Lot_ID: 1 Source: MBLI Target Name: SYNCRIP-human
SYNCRIP	Product_ID: 8588S Lot_ID: 1 Source: Cell Signaling Technology Target Name: SYNCRIP-human

SYNCRIP

General Information

Functions

Localization

Domains (AlphaFold: SYNCRIP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SYNCRIP is not avaliable on ENCORE database.

57 proteins are bound to SYNCRIP RNA:

eCLIP assay for SYNCRIP is not avaliable on ENCORE database.

Diffrential Expression

4,739 differentially expressed genes after Knockdown/Knockout SYNCRIP protein :

109 RBPs can affect the gene expression of SYNCRIP :

The Knockdown/knockout RNA-Seq assay for SYNCRIP is not available on ENCORE database.

21 RBPs can affect the splicing of SYNCRIP :

The Knockdown/knockout RNA-Seq assay for SYNCRIP is not avaliable on ENCORE database.