SS18L2

General Information

Gene Name       : SS18L2
Gene ID             : ENSG00000008324.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SS18L2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SS18L2ENSG00000008324.1161.0254.9057.96ENCSR000AEF
HepG2SS18L2ENSG00000008324.1123.4738.7031.09ENCSR985KAT
K562SS18L2ENSG00000008324.1152.1852.4552.31ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SS18L2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SS18L2 RNA is bound by 9 proteins.  







eCLIP assay for SS18L2 is not avaliable on ENCORE database.





9 proteins are bound to SS18L2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr34263619642636251+3'-UTR5.4119628.63622K562PUM2
chr34263621142636286+3'-UTR4.180396.18635K562TIA1
chr34263614642636196+3'-UTR5.4761218.89367K562PUM2
chr34263620442636284+3'-UTR3.763494.63751K562IGF2BP1
chr34263237642632450+3'-UTR,5'-UTR,CDS4.0658013.58160K562DDX3X
chr34263238842632456+3'-UTR,5'-UTR,CDS3.448783.22545HepG2PPIG
chr34263639842636459+3'-UTR5.8993527.17417K562PUM2
chr34263301742633050+CDS3.861186.64581K562YBX3
chr34263301542633094+CDS,intron-Proximal4.5006315.56064K562DDX3X
chr34263245042632459+CDS,intron-Proximal3.902445.07098K562DDX3X
chr34262856242628670+intron-Distal4.732125.39854K562PTBP1
chr34262739942627476+intron-Distal4.331828.74824HepG2RBFOX2
chr34263249442632551+intron-Proximal4.227074.89018K562EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SS18L2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SS18L2 is not available on ENCORE database.

  • 39 RBPs can affect the levels of SS18L2.  








The Knockdown/knockout RNA-Seq assay for SS18L2 is not available on ENCORE database.





39 RBPs can affect the gene expression of SS18L2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SS18L2ENSG00000008324.6209.70650296.23370-0.498403.022002.35530HepG2CELF1
SS18L2ENSG00000008324.6183.51480318.58760-0.795807.191906.07710HepG2DAZAP1
SS18L2ENSG00000008324.6109.86560254.33870-1.211007.819906.85790HepG2EIF2S1
SS18L2ENSG00000008324.6202.69510281.05970-0.471601.870401.34090HepG2EIF4A3
SS18L2ENSG00000008324.6184.07320263.07720-0.515202.153001.56350HepG2G3BP1
SS18L2ENSG00000008324.6179.32710279.32020-0.639303.106702.16290HepG2G3BP2
SS18L2ENSG00000008324.6179.03180268.97810-0.587302.226801.33960HepG2KHSRP
SS18L2ENSG00000008324.6195.84120283.72040-0.534802.382901.77290HepG2MAGOH
SS18L2ENSG00000008324.6151.44520285.30120-0.913705.051904.22230HepG2MATR3
SS18L2ENSG00000008324.6184.26510260.03270-0.496902.068401.43610HepG2PABPC4
SS18L2ENSG00000008324.687.27560176.07750-1.012604.347903.35940HepG2PRPF8
SS18L2ENSG00000008324.6223.41810301.54360-0.432602.004201.48590HepG2PUF60
SS18L2ENSG00000008324.6200.14030319.86020-0.676404.621003.76490HepG2PUM2
SS18L2ENSG00000008324.680.67020161.55660-1.001904.511103.66750HepG2RPLP0
SS18L2ENSG00000008324.651.8341095.85640-0.887002.522801.93330HepG2RPS19
SS18L2ENSG00000008324.685.81940174.17890-1.021204.195703.25040HepG2RRP9
SS18L2ENSG00000008324.6215.25690289.09080-0.425502.459001.79180HepG2SLBP
SS18L2ENSG00000008324.6122.34330192.71600-0.655502.572601.65070HepG2SMNDC1
SS18L2ENSG00000008324.6192.79920297.70560-0.626804.410803.65380HepG2SRSF5
SS18L2ENSG00000008324.6256.62720328.40910-0.355801.864401.42190HepG2SSB
SS18L2ENSG00000008324.677.48430173.65430-1.164203.049802.52910HepG2TIAL1
SS18L2ENSG00000008324.6198.17000294.56150-0.571803.200702.25420HepG2TUFM
SS18L2ENSG00000008324.6159.12690104.302100.609302.264901.71150HepG2UTP3
SS18L2ENSG00000008324.6321.13940215.431300.575903.486402.86240K562AGGF1
SS18L2ENSG00000008324.6302.96010224.160800.434501.911801.36460K562AKAP8L
SS18L2ENSG00000008324.6236.00970323.11250-0.453202.476801.48390K562CSTF2
SS18L2ENSG00000008324.680.99490140.50090-0.794703.105201.69470K562DHX30
SS18L2ENSG00000008324.6240.20690324.21940-0.432702.188901.45540K562EIF4A3
SS18L2ENSG00000008324.6138.00760215.37030-0.642103.188801.82010K562EXOSC5
SS18L2ENSG00000008324.6464.91970337.172000.463403.285602.63450K562FXR1
SS18L2ENSG00000008324.6359.68980479.90090-0.416002.695401.63740K562HNRNPA1
SS18L2ENSG00000008324.6143.18260247.88190-0.791804.375103.64110K562HNRNPC
SS18L2ENSG00000008324.6407.82740531.45210-0.382002.636101.76400K562HNRNPU
SS18L2ENSG00000008324.6293.28930186.806500.650702.720401.84570K562NAA15
SS18L2ENSG00000008324.6408.80170222.343400.878506.262805.48510K562PUS1
SS18L2ENSG00000008324.6324.82090216.609200.584503.481702.82890K562RBM15
SS18L2ENSG00000008324.6293.65560210.762000.478402.483201.70720K562SYNCRIP
SS18L2ENSG00000008324.6323.43350445.76220-0.462802.678301.98030K562TARDBP
SS18L2ENSG00000008324.6155.48540227.19790-0.547202.247801.40800K562TRIM56
SS18L2ENSG00000008324.6269.76670377.77620-0.485803.271401.88490K562TROVE2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SS18L2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SS18L2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SS18L2 is not avaliable on ENCORE database.