SSB

General Information

Gene Name       : SSB
Gene ID             : ENSG00000138385.15
Essential Gene : No

Functions

Localization(RBPImage: SSB)

Domains (AlphaFold: SSB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SSBENSG00000138385.15173.79140.41157.10ENCSR000AEF
HepG2SSBENSG00000138385.15133.33327.60230.47ENCSR985KAT
K562SSBENSG00000138385.15336.78416.63376.70ENCSR000AEO

Assays

4 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 730ENCSR352STYSSBHepG2ReleasedENCAB214FIOENCSR145ZKN  
eCLIPeCLIP: 738ENCSR356MSWSSBK562ReleasedENCAB214FIOENCSR680HYD  
knockdown followed by RNA-seq SSB-BGKLV13-K562ENCSR891AXFSSBK562ReleasedENCSR084SCN   shRNAKD% = 0.0,0.0
knockdown followed by RNA-seq SSB-BGHLV37-HepG2ENCSR278CHISSBHepG2ReleasedENCSR997HCQ   shRNAKD% = 55.5,59.4






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
SSB730HepG2ENCSR352STYENCSR145ZKNENCAB214FIORN074PW1ReleasedENCODE4
SSB738K562ENCSR356MSWENCSR680HYDENCAB214FIORN074PW1ReleasedENCODE4


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
SSBENCAB214FIORN074PW1Released, ENCODE3Released, ENCODE3BGHLV37-61, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
SSBK562shRNAENCSR891AXFENCSR084SCNSSB_BGKLV13_67,SSB_BGKLV13_68non-target_BGKLV13_73,non-target_BGKLV13_740.0,0.0ReleasedENCODE3
SSBHepG2shRNABGHLV20-57,BGHLV20-58BGHLV20-1,BGHLV20-20.0,0.0NotSatisfiedENCODE3
SSBHepG2shRNABGHLV30-49,BGHLV30-50BGHLV30-1,BGHLV30-2NotSatisfiedENCODE3
SSBHepG2shRNAENCSR278CHIENCSR997HCQSSB_BGHLV37-61,SSB_BGHLV37-62NT_BGHLV37-1,NT_BGHLV37-255.5,59.4ReleasedENCODE3
SSBHepG2shRNABGHLV37-63,BGHLV37-64BGHLV37-1,BGHLV37-252.9,53.5NotSatisfiedENCODE3
SSBHepG2shRNABGHLV37-65,BGHLV37-66BGHLV37-1,BGHLV37-250.4,43.0NotSatisfiedENCODE3
SSBHepG2shRNABGHLV37-67,BGHLV37-68BGHLV37-1,BGHLV37-248.1,63.2NotSatisfiedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    SSB: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Nucleolus
  • Variable Nuclear Intensity
  • Nuclear release mitosis












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    SSBProduct_ID: RN074PW
    Lot_ID: 1
    Source: MBLI
    Target Name: SSB-human    		 HepG2_MBLI_RN074PW_001_SSB.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using SSB specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-SSB antibody (lanes under 'SSB').
    		 SSB-HEPG2.png<br>Caption: Western blot following shRNA against SSB in HepG2 whole cell lysate using SSB specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against SSB. SSB protein appears as the green band, GAPDH serves as a control and appears in red.
    		 K562_MBLI_RN074PW_001_SSB.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using SSB specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-SSB antibody (lanes under 'SSB').








    RNA Targets
    • SSB protein binds to 166 RNA regions.  





    Proteins bound to RNA
    • SSB RNA is bound by 32 proteins.  






    SSB protein has 166 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 166 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    SSBchr1266196896619710+3.198204.72438HepG2NCAPD2intron-Distal,intron-Proximal
    SSBchr142186546121865512-4.880075.80194K562CHD8intron-Distal
    SSBchr48381701283817082-3.106795.74074K562THAP9-AS1, SEC31Aintron-Distal,intron-Proximal
    SSBchr194598186145981880-3.375264.53079K562ERCC1intron-Distal
    SSBchr177455720374557230+3.954036.10456K562SNHG16intron-Distal
    SSBchr191022092910220954+5.095926.05568K562PPAN, PPAN-P2RY11intron-Proximal
    SSBchr86702563167025638+3.630837.48413HepG2AC084082.3intron-Distal
    SSBchr136893843689397+4.630126.63177HepG2SMIM15'-UTR
    SSBchr117511143375111443+3.366906.48253K562RPS3intron-Distal
    SSBchr2024436412443664-4.020127.17192K562SNRPBintron-Distal,intron-Proximal
    SSBchr114678398546784001-3.9370446.87966K562CKAP5intron-Distal
    SSBchr63180307831803100+3.5950710.06483K562C6orf485'-UTR,intron-Distal,intron-Proximal
    SSBchr34745132447451379+4.988867.30077K562PTPN23intron-Proximal
    SSBchr12890532028905332-4.649835.90758K562SNHG12intron-Distal
    SSBchr114678396246783968-4.5773436.88343K562CKAP5intron-Distal
    SSBchr136893523689384+3.642905.31833HepG2SMIM15'-UTR
    SSBchr167179237971792384-3.654847.57188HepG2AP1G1intron-Distal
    SSBchr165062336050623395+4.896598.13378HepG2NKD1intron-Distal
    SSBchr34992878749928828-4.570613.01364K562MST1Rintron-Distal,intron-Proximal
    SSBchr28627624086276261-4.027943.77687HepG2POLR1Aintron-Distal,intron-Proximal
    SSBchr3160232746160232793-4.1128312.82178K562KPNA4intron-Distal
    SSBchr34573055345730570-5.199595.90758K562LIMD1-AS1intron-Distal
    SSBchr116402308864023132+4.7138810.26000K562PLCB3intron-Proximal
    SSBchr111082308210823117-4.7769587.23221HepG2EIF4G2intron-Distal,intron-Proximal
    SSBchr177355925873559295+4.1091314.54484HepG2LLGL2CDS,intron-Proximal
    SSBchr1266196866619697+4.424788.21364K562NCAPD2intron-Distal,intron-Proximal
    SSBchr116574403865744082+5.9161413.84036K562SART1CDS,intron-Proximal
    SSBchr34864232848642417-4.462326.18592HepG2UQCRC1intron-Distal
    SSBchr114678400746784032-3.1758927.01766K562CKAP5intron-Distal
    SSBchr177508543375085463+4.8506352.21606K562SEC14L1, LINC00338intron-Distal,intron-Proximal
    SSBchr5149755470149755484+3.663023.37925HepG2TCOF1CDS,intron-Distal,intron-Proximal
    SSBchr134163486341634904-4.1656921.80189K562ELF1intron-Distal
    SSBchr5180618751180618766-4.9050618.14882K562CTC-338M12.2intron-Distal
    SSBchr1774802127480216+3.5573928.59443HepG2SENP3-EIF4A1, EIF4A1, SNORA67intron-Distal
    SSBchr7101503787101503865+4.221204.50962K562CUX1intron-Distal
    SSBchr5149755487149755516+3.855333.73046HepG2TCOF1intron-Distal,intron-Proximal
    SSBchr114678396846783984-4.2263147.58178K562CKAP5intron-Distal
    SSBchr1780769018076906-3.4404226.03396HepG2TMEM1073'-UTR,intron-Distal
    SSBchr142186551221865564-3.731585.84607K562CHD8intron-Distal
    SSBchr165010018050100212+4.029927.23829K562HEATR3intron-Proximal
    SSBchr145870664258706670-4.4619618.26939K562C14orf37intron-Distal
    SSBchr61626733716267356+3.6277611.13767K562GMPRintron-Distal
    SSBchr13114018278114018297-3.778804.89601HepG2GRTP1intron-Distal,intron-Proximal
    SSBchr167069877770698803-4.399315.60724HepG2MTSS1Lintron-Distal,intron-Proximal
    SSBchr124972283849722883+4.153944.24687K562TROAP3'-UTR,intron-Proximal
    SSBchr177618727476187355+3.838353.73046HepG2AFMIDintron-Distal
    SSBchr117511546375115470+3.3940217.40904K562RPS3intron-Distal
    SSBchr191022092110220929+3.846974.29382K562PPAN, PPAN-P2RY11CDS,intron-Proximal
    SSBchr9134281779134281890+4.046683.97732HepG2PRRC2Bintron-Distal
    SSBchr111082306610823082-4.7533279.41561HepG2EIF4G2intron-Distal
    SSBchr167179232571792352-3.371335.86561K562AP1G1intron-Distal
    SSBchr7139025439139025452+4.274447.72156K562C7orf55, C7orf55-LUC7L2intron-Distal,intron-Proximal
    SSBchr7139025495139025530+3.006704.34512HepG2C7orf55-LUC7L2, C7orf55intron-Distal
    SSBchr86702559367025637+5.1034815.65606K562AC084082.3intron-Distal
    SSBchr154549078045490845-3.322154.40115K562SHFintron-Distal
    SSBchr14524216245242235+3.3481211.34240K562RPS8intron-Distal
    SSBchr177508546775085474+5.0322546.87733K562LINC00338, SEC14L1intron-Distal
    SSBchr111082314610823153-3.9607913.10671HepG2EIF4G2intron-Distal,intron-Proximal
    SSBchr177355929573559308+5.3742123.15789HepG2LLGL2intron-Proximal
    SSBchr7139025452139025486+3.9159044.77258K562C7orf55, C7orf55-LUC7L2intron-Distal,intron-Proximal
    SSBchr162888330628883313+6.8255064.70671K562SH2B1intron-Distal,intron-Proximal
    SSBchr5138066816138066909+3.948633.31709HepG2CTNNA1intron-Distal
    SSBchr214756117947561239-3.117113.58499HepG2FTCDintron-Distal
    SSBchr28627627286276283-3.068073.37628HepG2POLR1Aintron-Distal,intron-Proximal
    SSBchr22727364027273683+4.161018.76785K562AGBL5intron-Distal
    SSBchr86702563767025707+3.6834918.97510K562AC084082.3intron-Distal
    SSBchr3186502654186502695+3.488943.96566HepG2EIF4A2intron-Distal,intron-Proximal
    SSBchr13144104231441077-3.103706.74509K562PUM1intron-Distal,intron-Proximal
    SSBchr34864308948643147-4.024223.55343HepG2UQCRC1intron-Distal,intron-Proximal
    SSBchr165010021250100225+3.933186.74320K562HEATR3intron-Proximal
    SSBchr162888330328883306+5.9545745.13411K562SH2B1CDS,intron-Distal,intron-Proximal
    SSBchr222205048722050535+4.503154.82573K562PPIL23'-UTR,intron-Distal
    SSBchr111082302010823066-3.3491544.21806HepG2EIF4G2intron-Distal
    SSBchr62698815826988181+4.738904.01859K562LINC00240intron-Distal
    SSBchr111052988810529952-4.797787.15677HepG2MTRNR2L85'-UTR
    SSBchr167057192170572005+3.327903.10135K562SF3B3intron-Distal
    SSBchr165060505350605117+4.077384.76663HepG2NKD1intron-Distal
    SSBchr21172216211722255+3.315327.05234HepG2GREB1intron-Distal
    SSBchr145870660158706642-3.544389.29179K562C14orf37intron-Distal
    SSBchr117511144375111518+3.559939.94985K562RPS35'-UTR,intron-Distal
    SSBchr165062333750623360+4.857427.70064HepG2NKD1intron-Distal
    SSBchr162888334028883366+7.2389089.23305K562SH2B1intron-Distal,intron-Proximal
    SSBchr1613651241365199+4.490925.54663K562UBE2Iintron-Distal
    SSBchr111082312510823155-3.972187.23829K562EIF4G2intron-Distal,intron-Proximal
    SSBchr7139025527139025531+3.9962710.57638K562C7orf55-LUC7L2, C7orf55intron-Distal
    SSBchr54083277040832798-4.085183.48340K562RPL37intron-Distal
    SSBchr714799851480101-3.485763.05925K562MICALL2intron-Distal
    SSBchr177303000073030081+3.128333.40004HepG2KCTD2intron-Distal,intron-Proximal
    SSBchr64375287243752918+3.855854.53635HepG2VEGFA3'-UTR
    SSBchr165065091850650999+3.267344.32955HepG2NKD1intron-Distal
    SSBchr162888330328883306+4.2531019.99151HepG2SH2B1CDS,intron-Distal,intron-Proximal
    SSBchr142186031221860414-3.933183.50142K562CHD8intron-Distal
    SSBchr12890528828905320-3.100356.76725K562SNHG12intron-Distal
    SSBchr168879897888798993-6.1360915.42607K562PIEZO1intron-Distal,intron-Proximal
    SSBchr111082306710823089-3.646698.70876K562EIF4G2intron-Distal
    SSBchr63180306331803066+3.693979.55457K562C6orf485'-UTR,intron-Distal,intron-Proximal
    SSBchrX135961425135961434-3.4464212.14300K562RBMXintron-Distal,intron-Proximal
    SSBchr111082311710823146-4.1097912.98176HepG2EIF4G2intron-Distal,intron-Proximal
    SSBchr111082308910823125-3.575509.98691K562EIF4G2intron-Distal,intron-Proximal
    SSBchr1161582499161582587+4.0331935.86758K562FCGR2Bintron-Distal




    32 proteins are bound to SSB RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr2170668390170668456+3'-UTR5.6081154.48853K562NOLC1
    chr2170668480170668513+3'-UTR5.4953117.62510HepG2SUB1
    chr2170668396170668421+3'-UTR3.911056.30523HepG2FUBP3
    chr2170668177170668269+3'-UTR,CDS,intron-Proximal3.815288.50585HepG2GRWD1
    chr2170668175170668276+3'-UTR,CDS,intron-Proximal3.7698015.73028K562CPSF6
    chr2170662010170662074+3'-UTR,CDS3.1056510.78760HepG2BCLAF1
    chr2170668410170668461+3'-UTR3.1502515.34188K562UCHL5
    chr2170668394170668426+3'-UTR4.0386716.61867HepG2BCLAF1
    chr2170668305170668367+3'-UTR3.5163021.96698K562ZNF622
    chr2170661998170662038+3'-UTR,CDS3.3185416.24031K562UCHL5
    chr2170662038170662076+3'-UTR,CDS3.7023220.62260K562UCHL5
    chr2170657461170657469+3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.1688227.93610K562DDX3X
    chr2170663293170663395+3'-UTR,CDS,intron-Proximal3.0258530.04324K562ZNF622
    chr2170668411170668429+3'-UTR3.056019.58912K562ZNF622
    chr2170668236170668280+3'-UTR,CDS3.6746423.13223K562UCHL5
    chr2170668181170668267+3'-UTR,CDS4.9989750.14045K562ZNF622
    chr2170668293170668361+3'-UTR3.301303.37783HepG2TIAL1
    chr2170668421170668514+3'-UTR3.8848212.90466HepG2FUBP3
    chr2170663372170663461+3'-UTR,CDS,intron-Proximal3.8771811.67381K562PRPF8
    chr2170663310170663362+3'-UTR,CDS3.5470222.39321HepG2BCLAF1
    chr2170668246170668274+3'-UTR,CDS3.698236.61082K562GRWD1
    chr2170668410170668499+3'-UTR4.373706.77992K562CPSF6
    chr2170663228170663328+3'-UTR,CDS,intron-Proximal3.2550119.38735K562SF3B4
    chr2170668408170668465+3'-UTR3.556434.94908K562TIA1
    chr2170662049170662074+3'-UTR,CDS4.404305.59408HepG2GRWD1
    chr2170668492170668538+3'-UTR4.9484752.89959K562PABPC4
    chr2170668176170668276+3'-UTR,CDS,intron-Proximal4.716067.30246HepG2FXR2
    chr2170668175170668265+3'-UTR,CDS,intron-Proximal4.357818.14854HepG2TRA2A
    chr2170663271170663333+3'-UTR,CDS,intron-Proximal3.593289.99478K562U2AF2
    chr2170668304170668363+3'-UTR3.662175.59504K562SRSF7
    chr2170668310170668348+3'-UTR4.2672425.33087HepG2BCLAF1
    chr2170668234170668277+3'-UTR,CDS5.4803320.21434HepG2BCLAF1
    chr2170668399170668425+3'-UTR3.0183811.98674K562AGGF1
    chr2170668456170668486+3'-UTR4.9236315.08301K562NOLC1
    chr2170668413170668466+3'-UTR3.7731413.01165K562DDX6
    chr2170663375170663445+3'-UTR,CDS,intron-Proximal4.916549.38298HepG2PRPF8
    chr2170668300170668310+3'-UTR4.5322612.86440HepG2BCLAF1
    chr2170668426170668465+3'-UTR4.5510421.30803HepG2BCLAF1
    chr2170657469170657529+3'-UTR,5'-UTR,CDS,intron-Distal3.4994823.78131K562DDX3X
    chr2170663293170663310+3'-UTR,CDS,intron-Proximal3.2963913.76394HepG2BCLAF1
    chr2170668393170668480+3'-UTR6.99220400.00000HepG2SUB1
    chr2170668348170668367+3'-UTR3.957788.81620HepG2BCLAF1
    chr2170668466170668526+3'-UTR4.002626.30386K562DDX6
    chr2170655393170655449+5'-UTR,intron-Distal4.226907.49943HepG2DDX3X
    chr2170655387170655438+5'-UTR,intron-Distal4.059635.76597K562EIF3G
    chr2170655393170655489+5'-UTR,intron-Distal,intron-Proximal3.691428.71399HepG2EIF3D
    chr2170655440170655487+5'-UTR,intron-Distal,intron-Proximal4.54706400.00000K562DDX3X
    chr2170655388170655440+5'-UTR,intron-Distal4.2583559.69871K562DDX3X
    chr2170667377170667441+CDS3.2385130.10108K562UCHL5
    chr2170667814170667832+CDS4.123139.25033K562CPSF6
    chr2170667458170667530+CDS3.993837.71865HepG2TRA2A
    chr2170662072170662087+CDS3.2687512.01864K562ZNF622
    chr2170667478170667507+CDS4.0358126.63795K562ZNF622
    chr2170666881170666928+CDS3.1014420.66890K562UCHL5
    chr2170665368170665412+CDS,intron-Proximal5.042626.73315K562TRA2A
    chr2170667431170667528+CDS5.7990438.03869HepG2BCLAF1
    chr2170667806170667833+CDS3.177975.20722K562TRA2A
    chr2170666792170666827+CDS,intron-Proximal3.673683.65489K562CPSF6
    chr2170667784170667833+CDS4.1442412.31612K562SRSF7
    chr2170667368170667378+CDS3.9206311.90424K562ZNF622
    chr2170662174170662201+CDS,intron-Proximal4.8760311.99174HepG2BCLAF1
    chr2170667708170667776+CDS4.0060327.16527K562ZNF622
    chr2170667441170667539+CDS3.9567257.49733K562UCHL5
    chr2170666794170666930+CDS3.849073.23099HepG2UCHL5
    chr2170667699170667760+CDS4.3846521.15094HepG2BCLAF1
    chr2170663520170663554+CDS3.042934.20172HepG2GRWD1
    chr2170667539170667554+CDS3.6040115.87651K562UCHL5
    chr2170666928170666933+CDS3.5114311.59993K562UCHL5
    chr2170667382170667425+CDS3.1938812.84530K562ZNF622
    chr2170667702170667835+CDS,intron-Proximal3.042925.73306HepG2ZNF800
    chr2170665050170665063+CDS4.534648.15024HepG2BCLAF1
    chr2170662493170662564+CDS,intron-Distal,intron-Proximal3.2082810.77971K562PRPF8
    chr2170662074170662087+CDS3.764128.19964HepG2BCLAF1
    chr2170668176170668181+CDS,intron-Proximal4.7472126.49425K562ZNF622
    chr2170667772170667833+CDS4.6633132.25881HepG2BCLAF1
    chr2170667808170667833+CDS3.1967527.44892K562UCHL5
    chr2170665360170665407+CDS,intron-Proximal3.293473.39327K562U2AF2
    chr2170662174170662197+CDS,intron-Proximal3.1356211.44762K562UCHL5
    chr2170662174170662193+CDS,intron-Proximal4.230903.34184HepG2GRWD1
    chr2170662250170662314+CDS3.3924814.17692HepG2BCLAF1
    chr2170668177170668234+CDS,intron-Proximal4.8342431.50578HepG2BCLAF1
    chr2170662342170662350+CDS,intron-Proximal4.9310512.44336HepG2BCLAF1
    chr2170667773170667833+CDS3.509306.81934HepG2GRWD1
    chr2170662487170662561+CDS,intron-Distal,intron-Proximal4.310755.42763HepG2HNRNPC
    chr2170667441170667550+CDS3.3105827.01248K562AGGF1
    chr2170667781170667814+CDS3.449707.50653K562CPSF6
    chr2170667531170667552+CDS3.309709.54151K562ZNF622
    chr2170665403170665412+CDS3.948827.58784HepG2BCLAF1
    chr2170662330170662338+CDS4.033785.06180HepG2BCLAF1
    chr2170665369170665385+CDS,intron-Proximal4.9245911.13876HepG2BCLAF1
    chr2170665363170665417+CDS,intron-Proximal3.4225610.57122HepG2AQR
    chr2170663533170663622+CDS,intron-Proximal3.323424.97939HepG2PRPF8
    chr2170663554170663570+CDS4.134583.34184HepG2GRWD1
    chr2170665058170665115+CDS,intron-Proximal3.223463.78727K562PRPF8
    chr2170668177170668221+CDS,intron-Proximal4.300953.18415HepG2FASTKD2
    chr2170662193170662220+CDS4.570994.21087HepG2GRWD1
    chr2170664995170665030+CDS5.1501114.17165HepG2BCLAF1
    chr2170667507170667527+CDS3.4444812.29050K562ZNF622
    chr2170662249170662317+CDS3.2619720.94378K562ZNF622
    chr2170662175170662184+CDS3.114649.27114K562ZNF622
    chr2170667776170667809+CDS3.7071324.65774K562ZNF622
    chr2170667367170667377+CDS,intron-Proximal3.1311011.45886K562UCHL5
    chr2170667438170667478+CDS3.6036325.94500K562ZNF622
    chr2170667452170667529+CDS4.332515.52031HepG2GRWD1
    chr2170668176170668257+CDS,intron-Proximal3.3836710.66053K562SRSF7
    chr2170667809170667833+CDS4.2287531.89235K562ZNF622
    chr2170666793170666884+CDS3.0635823.97770K562ZNF622
    chr2170667764170667834+CDS,intron-Proximal3.173198.82994HepG2AQR
    chr2170663479170663581+CDS,intron-Proximal3.6588330.58364HepG2BCLAF1
    chr2170667528170667550+CDS4.489163.75533K562TRA2A
    chr2170665385170665403+CDS4.3953610.57092HepG2BCLAF1
    chr2170667784170667833+CDS4.201605.53098HepG2FXR2
    chr2170662232170662250+CDS3.247056.09950HepG2BCLAF1
    chr2170664991170664995+CDS,intron-Proximal4.006569.09836HepG2BCLAF1
    chr2170667367170667376+CDS,intron-Proximal4.6316110.19430HepG2BCLAF1
    chr2170668176170668186+CDS,intron-Proximal3.1651627.66667K562UCHL5
    chr2170668177170668254+CDS,intron-Proximal3.248145.62228HepG2G3BP1
    chr2170667693170667755+CDS3.6498337.75257K562UCHL5
    chr2170666884170666932+CDS3.5503217.77898K562ZNF622
    chr2170667737170667804+CDS4.088905.25158HepG2TRA2A
    chr2170668186170668236+CDS3.3278240.84079K562UCHL5
    chr2170667451170667528+CDS4.8422513.01584K562TRA2A
    chr2170667378170667429+CDS5.0208818.70260HepG2BCLAF1
    chr2170666813170666892+CDS4.5427430.26893HepG2BCLAF1
    chr2170665037170665064+CDS,intron-Proximal4.290954.37667K562SAFB2
    chr2170667699170667708+CDS3.239748.95936K562ZNF622
    chr2170668177170668242+CDS,intron-Proximal3.165236.59511K562TRA2A
    chr2170667755170667779+CDS3.1766820.87795K562UCHL5
    chr2170667528170667552+CDS4.0039810.78406HepG2BCLAF1
    chr2170668166170668243+CDS,intron-Proximal3.5928917.17303HepG2AQR
    chr2170662251170662314+CDS3.388373.09129HepG2GRWD1
    chr2170665029170665063+CDS3.003164.71396K562CPSF6
    chr2170666892170666933+CDS4.3167715.85384HepG2BCLAF1
    chr2170662074170662087+CDS4.159533.56019HepG2GRWD1
    chr2170666792170666810+CDS,intron-Proximal3.270475.86176HepG2BCLAF1
    chr2170666815170666932+CDS3.466336.90893HepG2GRWD1
    chr2170667036170667101+intron-Distal3.131305.40698K562KHSRP
    chr2170662671170662719+intron-Distal,intron-Proximal3.839925.93686K562XRCC6
    chr2170665996170666095+intron-Distal3.714225.50753K562QKI
    chr2170655564170655614+intron-Distal,intron-Proximal4.090113.45860K562TIA1
    chr2170655496170655525+intron-Distal,intron-Proximal5.123633.62536K562AQR
    chr2170667101170667216+intron-Distal3.9459013.47128K562KHSRP
    chr2170663412170663480+intron-Proximal3.9714610.15139K562EFTUD2
    chr2170662127170662169+intron-Proximal4.114143.49003K562PRPF8
    chr2170663431170663480+intron-Proximal4.287909.48554K562SF3B4
    chr2170663586170663626+intron-Proximal3.796644.93376K562PRPF8
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein SSB and its RNA.



    Diffrential Expression
    • 10,701 differentially expressed genes after Knockdown/Knockout SSB protein.  





    • 103 RBPs can affect the levels of SSB.  







    10,701 differentially expressed genes after Knockdown/Knockout SSB protein :

    Only display 100 entries as example. Please click "View All" button to see all 10,701 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    TSPAN6ENSG00000000003.103033.091702705.580500.164801.873501.43010HepG2SSB
    SCYL3ENSG00000000457.9315.70880169.689700.895608.098307.30880HepG2SSB
    C1orf112ENSG00000000460.12378.29150464.50930-0.296201.862601.42030HepG2SSB
    FUCA2ENSG00000001036.92326.471804237.47370-0.8651038.5760037.17920HepG2SSB
    NFYAENSG00000001167.101738.754901517.740200.196001.985701.53320HepG2SSB
    NIPAL3ENSG00000001461.12266.23230414.43320-0.638505.677404.99330HepG2SSB
    LAS1LENSG00000001497.12731.400301091.57130-0.577709.576208.73450HepG2SSB
    SEMA3FENSG00000001617.7314.99270861.62230-1.4517038.0699036.68080HepG2SSB
    CYP51A1ENSG00000001630.119473.275304832.745300.9709020.3843019.27140HepG2SSB
    KRIT1ENSG00000001631.101180.73790912.519600.371704.780104.14270HepG2SSB
    RAD52ENSG00000002016.12475.00260357.186100.411203.019302.48870HepG2SSB
    MYH16ENSG00000002079.80.5570016.10220-4.853404.162403.56060HepG2SSB
    LAP3ENSG00000002549.81968.116002476.03750-0.331205.473804.80040HepG2SSB
    CD99ENSG00000002586.133142.521102663.611300.238403.541702.97760HepG2SSB
    LASP1ENSG00000002834.1310399.596508086.267000.362909.647608.80330HepG2SSB
    SNX11ENSG00000002919.10577.41450436.141500.404702.835302.31800HepG2SSB
    KLHL13ENSG00000003096.985.2381023.149201.880407.757806.98410HepG2SSB
    DBNDD1ENSG00000003249.9658.028001150.35880-0.805907.381206.62110HepG2SSB
    ALS2ENSG00000003393.101665.841601450.164300.199902.022201.56660HepG2SSB
    CFLARENSG00000003402.153444.534602520.935500.450206.119805.41270HepG2SSB
    TFPIENSG00000003436.103082.5173012018.06480-1.96300226.86890224.42670HepG2SSB
    RBM5ENSG00000003756.124264.299503778.546100.174402.185401.71600HepG2SSB
    SLC7A2ENSG00000003989.121651.649007608.88910-2.2038033.9859032.64830HepG2SSB
    ARF5ENSG00000004059.61577.991301280.738100.301003.633403.06320HepG2SSB
    POLDIP2ENSG00000004142.73220.316202668.225800.271204.323403.71240HepG2SSB
    PLXND1ENSG00000004399.8827.591403313.28070-2.00130151.04900148.87270HepG2SSB
    AK2ENSG00000004455.122391.212803708.67640-0.6332020.4845019.36910HepG2SSB
    FKBP4ENSG00000004478.51205.817502515.65480-1.0609044.6150043.15610HepG2SSB
    KDM1AENSG00000004487.114014.435004704.53670-0.228903.692403.11920HepG2SSB
    RBM6ENSG00000004534.105396.094704438.497400.281705.345004.67830HepG2SSB
    RECQLENSG00000004700.11567.420901035.06160-0.8672010.231609.36520HepG2SSB
    ARHGAP33ENSG00000004777.14473.63580261.679300.8559010.206409.34050HepG2SSB
    NDUFAB1ENSG00000004779.52034.321802493.34240-0.293504.623003.99390HepG2SSB
    ST7ENSG00000004866.14832.42230476.031100.8062014.3568013.37180HepG2SSB
    DVL2ENSG00000004975.71478.561201152.369800.359505.012904.36230HepG2SSB
    UPF1ENSG00000005007.84108.904203087.908800.412009.646908.80290HepG2SSB
    SKAP2ENSG00000005020.81046.49110706.869500.565909.121108.29500HepG2SSB
    SLC25A5ENSG00000005022.57059.500807915.28250-0.165102.470401.97980HepG2SSB
    CCDC109BENSG00000005059.114.3298029.66630-2.776504.491503.86990HepG2SSB
    DHX33ENSG00000005100.81055.539201973.40810-0.9027029.4190028.15130HepG2SSB
    LIG3ENSG00000005156.7972.945901193.76580-0.295103.258902.71300HepG2SSB
    ACSM3ENSG00000005187.71217.360901056.063500.205001.793401.35890HepG2SSB
    AC004381.6ENSG00000005189.15602.34010378.959400.668408.073707.28580HepG2SSB
    SPPL2BENSG00000005206.121038.28110663.555600.645807.787107.01180HepG2SSB
    FAM214BENSG00000005238.15270.42630208.749000.373401.831401.39290HepG2SSB
    COPZ2ENSG00000005243.532.503806.021302.432404.480403.85910HepG2SSB
    PON1ENSG00000005421.4121.1777013.012503.2190020.7337019.61260HepG2SSB
    GCFC2ENSG00000005436.91246.50810935.005700.414705.730605.04390HepG2SSB
    WDR54ENSG00000005448.1222.51020298.22530-3.7278054.8149053.24850HepG2SSB
    CROTENSG00000005469.7782.86150345.887301.1784025.5416024.33580HepG2SSB
    KMT2EENSG00000005483.152532.490302004.214900.337405.787405.09760HepG2SSB
    SOX8ENSG00000005513.92.0596017.81590-3.112703.138302.60020HepG2SSB
    IBTKENSG00000005700.104283.692003333.693200.361607.935007.15290HepG2SSB
    ZNF195ENSG00000005801.12918.73230712.816600.366003.799203.21930HepG2SSB
    FBXL3ENSG00000005812.6820.37850612.503100.421504.722404.08800HepG2SSB
    ITGALENSG00000005844.13156.2886097.028400.687603.005202.47540HepG2SSB
    ITGA3ENSG00000005884.1310.12000168.29210-4.0557034.3789033.03600HepG2SSB
    ZFXENSG00000005889.114714.179701229.825201.93850168.41030166.15380HepG2SSB
    LAMP2ENSG00000005893.112871.261204949.87140-0.7857031.2250029.92900HepG2SSB
    GGNBP2ENSG00000005955.82166.087901675.464700.370406.460405.73740HepG2SSB
    ASB4ENSG00000005981.85.27530205.45790-5.2834050.8408049.31710HepG2SSB
    CRLF1ENSG00000006016.6340.900907935.33040-4.54090125.94680123.89280HepG2SSB
    YBX2ENSG00000006047.834.0064011.794601.527602.561102.06240HepG2SSB
    MAP3K14ENSG00000006062.9240.28640142.831000.750304.839104.19760HepG2SSB
    TMEM132AENSG00000006118.10749.215401251.78150-0.7405015.8500014.82950HepG2SSB
    AP2B1ENSG00000006125.124061.669605614.44040-0.4671013.3551012.39700HepG2SSB
    CX3CL1ENSG00000006210.68351.378203148.868101.4071067.4653065.79650HepG2SSB
    TNFRSF12AENSG00000006327.9280.59780602.84980-1.1033018.2728017.20150HepG2SSB
    DLX6ENSG00000006377.9258.67740195.872800.401101.903101.45720HepG2SSB
    MAP3K9ENSG00000006432.11418.06480635.56250-0.604307.002006.25750HepG2SSB
    BAIAP2L1ENSG00000006453.9357.934601005.12890-1.4896044.5851043.12680HepG2SSB
    JHDM1DENSG00000006459.6503.186002648.54410-2.39600153.28430151.09480HepG2SSB
    AGKENSG00000006530.11577.76090846.82790-0.551607.487206.72360HepG2SSB
    PHTF2ENSG00000006576.12606.05690495.427600.290702.106201.64280HepG2SSB
    FARP2ENSG00000006607.91215.881601472.06150-0.275803.153302.61400HepG2SSB
    GGCTENSG00000006625.13566.34900811.24260-0.518406.652005.92120HepG2SSB
    DBF4ENSG00000006634.3577.56920697.82670-0.272901.969601.51830HepG2SSB
    GTF2IRD1ENSG00000006704.61023.81750808.828400.340003.744103.16780HepG2SSB
    ELAC2ENSG00000006744.141237.362001441.09070-0.219902.247201.77410HepG2SSB
    ARSDENSG00000006756.11295.93210449.34290-0.602605.534104.85750HepG2SSB
    PNPLA4ENSG00000006757.7483.33900323.751400.578005.475004.80150HepG2SSB
    ADIPOR2ENSG00000006831.92998.575503892.71410-0.376505.675804.99180HepG2SSB
    UPP2ENSG00000007001.852.313106.055403.110808.842808.02650HepG2SSB
    MARK4ENSG00000007047.10518.824601185.10410-1.1917034.7479033.40190HepG2SSB
    PROM1ENSG00000007062.7509.22890808.78190-0.667409.816308.96490HepG2SSB
    CCDC124ENSG00000007080.6282.42790493.50330-0.805204.610203.98190HepG2SSB
    KIAA0100ENSG00000007202.103117.318905222.54030-0.7444031.5974030.29650HepG2SSB
    SLC13A2ENSG00000007216.109.132300.811903.491501.844301.40430HepG2SSB
    GAS7ENSG00000007237.1422.46800128.30940-2.5137011.3043010.40360HepG2SSB
    TRAPPC6AENSG00000007255.6285.08670192.095200.569503.557702.99260HepG2SSB
    PAX6ENSG00000007372.163.6885027.73880-2.910804.515103.89190HepG2SSB
    RHBDF1ENSG00000007384.11166.58660292.06770-0.810006.313805.59630HepG2SSB
    BAIAP3ENSG00000007516.9283.07860210.710600.425802.350301.86940HepG2SSB
    CDKL5ENSG00000008086.6232.18380156.544000.568602.870002.35010HepG2SSB
    CYTH3ENSG00000008256.11188.78300291.17510-0.625204.084903.48780HepG2SSB
    ADAM22ENSG00000008277.10598.02920374.438000.675408.207507.41480HepG2SSB
    CYB561ENSG00000008283.11284.80120113.502501.3271013.7696012.80050HepG2SSB
    SPAG9ENSG00000008294.162833.969305093.68810-0.8459038.9559037.55340HepG2SSB
    CELSR3ENSG00000008300.10808.713801377.32650-0.7682018.2557017.18480HepG2SSB
    AASSENSG00000008311.102025.30710681.972401.5703079.0607077.29680HepG2SSB
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    103 RBPs can affect the gene expression of SSB :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    SSBENSG00000138385.113918.576903350.732000.225802.124401.57720HepG2ACO1
    SSBENSG00000138385.117834.848604583.252700.7734010.187909.23300HepG2AKAP1
    SSBENSG00000138385.112772.363303366.79410-0.280303.659102.78940HepG2AKAP8L
    SSBENSG00000138385.114056.611005466.68520-0.4304010.685809.48260HepG2AUH
    SSBENSG00000138385.112287.892303345.16220-0.548103.387402.39520HepG2BCLAF1
    SSBENSG00000138385.114574.321007282.91910-0.6710011.9473010.82080HepG2BOP1
    SSBENSG00000138385.113834.305507617.72650-0.990403.076202.04500HepG2CCAR1
    SSBENSG00000138385.112925.789403602.97450-0.300402.221801.52450HepG2CIRBP
    SSBENSG00000138385.114452.193706686.16480-0.586708.365107.22380HepG2CPSF6
    SSBENSG00000138385.113958.065205690.57960-0.5238020.9937019.30890HepG2DAZAP1
    SSBENSG00000138385.111893.624402958.04180-0.6435014.9502012.64400HepG2DDX1
    SSBENSG00000138385.112738.753003771.09690-0.461503.872903.15210HepG2DDX6
    SSBENSG00000138385.112180.288402797.55990-0.359703.594202.48330HepG2DHX30
    SSBENSG00000138385.112681.909203205.84190-0.257403.644902.88640HepG2DKC1
    SSBENSG00000138385.112258.136902900.51190-0.361204.985404.06700HepG2DNAJC21
    SSBENSG00000138385.111789.976602874.97750-0.6836025.8768024.07770HepG2DNAJC2
    SSBENSG00000138385.112155.236803625.80250-0.750508.967807.93890HepG2EIF2S1
    SSBENSG00000138385.112927.571104007.20670-0.452903.674602.94050HepG2EIF4A3
    SSBENSG00000138385.115616.343303901.065200.525704.028303.20510HepG2EIF4B
    SSBENSG00000138385.113600.800705377.68970-0.578706.769605.52200HepG2EIF4G2
    SSBENSG00000138385.115463.357706276.51810-0.200202.672402.07990HepG2ETF1
    SSBENSG00000138385.112957.547202356.053600.327903.336102.47640HepG2FUBP3
    SSBENSG00000138385.111727.077002473.96090-0.518505.327704.08060HepG2GEMIN5
    SSBENSG00000138385.112385.945803245.12240-0.443702.966601.91110HepG2GNB2L1
    SSBENSG00000138385.114072.777807579.42090-0.8961014.6790013.31990HepG2GPKOW
    SSBENSG00000138385.112065.700102928.30040-0.503405.923805.02740HepG2HNRNPA1
    SSBENSG00000138385.112314.843503257.21880-0.492706.391405.37270HepG2HNRNPC
    SSBENSG00000138385.114425.191205593.44080-0.338002.201001.55580HepG2HNRNPF
    SSBENSG00000138385.113897.785705183.80220-0.4114013.7148012.32410HepG2HNRNPL
    SSBENSG00000138385.113529.053207233.16910-1.0353015.8791014.54290HepG2HNRNPLL
    SSBENSG00000138385.113786.415005508.02630-0.540704.034803.17500HepG2IGF2BP1
    SSBENSG00000138385.112372.749103063.22810-0.368505.343803.93700HepG2KIF1C
    SSBENSG00000138385.115819.929104066.462400.517105.061604.23140HepG2MATR3
    SSBENSG00000138385.113736.767907376.60330-0.981206.954805.38240HepG2MTPAP
    SSBENSG00000138385.112808.900304162.35790-0.567406.038805.11950HepG2NCBP2
    SSBENSG00000138385.114591.169905642.74590-0.297502.534501.80570HepG2NOL12
    SSBENSG00000138385.113904.251303202.738800.285604.571403.51380HepG2PARN
    SSBENSG00000138385.112517.879103724.38530-0.5648015.2243014.14030HepG2PTBP1
    SSBENSG00000138385.114070.990905386.38520-0.403904.216503.49820HepG2PUF60
    SSBENSG00000138385.114905.919205713.66060-0.219902.386601.76310HepG2PUM2
    SSBENSG00000138385.111551.540503412.99410-1.1373037.2175035.45480HepG2PUS1
    SSBENSG00000138385.113065.308804033.47220-0.396006.261305.37530HepG2QKI
    SSBENSG00000138385.116828.993903561.764800.939008.045606.88250HepG2RAVER1
    SSBENSG00000138385.116429.959905246.001000.293501.874401.42670HepG2RBM22
    SSBENSG00000138385.114604.769603660.684000.330903.445502.69910HepG2RBM25
    SSBENSG00000138385.114661.189106024.24950-0.370102.008501.41550HepG2RPLP0
    SSBENSG00000138385.113695.636102889.138100.355103.119602.29210HepG2RRP9
    SSBENSG00000138385.112465.297302881.50270-0.225101.975001.41570HepG2SAFB2
    SSBENSG00000138385.112456.376804512.27690-0.877309.065507.79020HepG2SF3A3
    SSBENSG00000138385.114706.672603877.457300.279504.908504.15660HepG2SF3B4
    SSBENSG00000138385.113911.493305164.43990-0.4009012.5499011.24230HepG2SLBP
    SSBENSG00000138385.117173.801005925.153300.275805.936105.27920HepG2SRFBP1
    SSBENSG00000138385.115811.776704047.270200.5219017.3750016.40510HepG2SRSF1
    SSBENSG00000138385.114409.933305318.11680-0.270204.893404.09870HepG2SRSF5
    SSBENSG00000138385.113973.424305495.08060-0.467803.116702.38400HepG2SRSF7
    SSBENSG00000138385.11827.067705144.41530-2.63690282.82840280.18780HepG2SSB
    SSBENSG00000138385.115252.449306048.29570-0.203503.882403.16810HepG2SUCLG1
    SSBENSG00000138385.112836.458507049.74980-1.3135039.6195037.48850HepG2TARDBP
    SSBENSG00000138385.111780.893003143.97240-0.8200020.4711019.34250HepG2TIAL1
    SSBENSG00000138385.112796.589503172.18170-0.181802.133901.62640HepG2TRIM56
    SSBENSG00000138385.114474.966205262.06030-0.233802.100801.34850HepG2TUFM
    SSBENSG00000138385.116732.307704224.267200.672303.598002.88520HepG2U2AF1
    SSBENSG00000138385.112681.880002225.930200.268702.144901.47640HepG2UCHL5
    SSBENSG00000138385.111819.717004001.69400-1.1369063.8270061.45860HepG2UPF1
    SSBENSG00000138385.115456.658803916.818700.478203.203302.06060HepG2XRCC6
    SSBENSG00000138385.111694.762204401.10540-1.37680116.92430114.78900HepG2ZNF622
    SSBENSG00000138385.1110333.290308978.812900.202603.343402.73110K562AGGF1
    SSBENSG00000138385.1111387.993209342.840000.285502.856702.19310K562AKAP8L
    SSBENSG00000138385.1111199.4464015802.95830-0.496807.155606.28210K562AQR
    SSBENSG00000138385.1112051.912409802.847000.297904.733103.50260K562ATP5C1
    SSBENSG00000138385.116764.257708415.36380-0.315107.046805.48630K562BCLAF1
    SSBENSG00000138385.1110848.2467016248.17050-0.582804.060903.00170K562BOP1
    SSBENSG00000138385.113198.150703910.60730-0.290202.481501.49480K562CCAR1
    SSBENSG00000138385.118637.3228010657.73280-0.303202.888401.57840K562CIRBP
    SSBENSG00000138385.1117869.5581024969.80850-0.482702.769401.70660K562CNOT7
    SSBENSG00000138385.1112348.1353016630.87640-0.429607.883605.99080K562CPEB4
    SSBENSG00000138385.1110384.5849017277.26830-0.734406.738805.50760K562CPSF6
    SSBENSG00000138385.115307.877006384.30660-0.266403.871002.59470K562CSTF2
    SSBENSG00000138385.115151.525006379.59460-0.308503.486002.30070K562DDX3X
    SSBENSG00000138385.1119837.7402017207.266900.205103.358102.64980K562DDX47
    SSBENSG00000138385.115312.220306468.05920-0.284003.989902.33230K562DDX6
    SSBENSG00000138385.1113959.5199010053.701800.4734011.812209.74710K562DKC1
    SSBENSG00000138385.115318.574904205.324900.338703.129301.69960K562DNAJC21
    SSBENSG00000138385.115502.782807007.40900-0.348707.250505.24460K562EIF2S1
    SSBENSG00000138385.117618.5617012575.15310-0.723008.616407.45320K562EIF2S2
    SSBENSG00000138385.115199.009506963.28200-0.421503.234002.10870K562EIF3D
    SSBENSG00000138385.1116238.0812020113.83630-0.308805.528104.22050K562EIF4G2
    SSBENSG00000138385.1111626.0107017577.65950-0.596404.499903.40670K562FMR1
    SSBENSG00000138385.1110647.4296014897.97860-0.484602.436301.58180K562FTO
    SSBENSG00000138385.118297.606306931.413900.259404.069503.35660K562FXR1
    SSBENSG00000138385.1112338.403508685.521300.506404.164303.25520K562G3BP2
    SSBENSG00000138385.114891.205806519.12270-0.414503.757402.05930K562GEMIN5
    SSBENSG00000138385.1110045.8972016496.18020-0.715506.538805.32200K562GPKOW
    SSBENSG00000138385.1113065.7759016759.36390-0.359202.001301.35280K562GRSF1
    SSBENSG00000138385.113799.714708722.49820-1.1989012.3741011.18770K562HNRNPC
    SSBENSG00000138385.115630.867407787.55140-0.467803.417402.13970K562HNRNPF
    SSBENSG00000138385.1111999.6832015551.12600-0.374004.998503.53470K562HNRNPL
    SSBENSG00000138385.117475.921709940.46710-0.411103.339302.17390K562IGF2BP2
    SSBENSG00000138385.117771.3064010112.30440-0.379903.303901.96900K562IGF2BP3
    SSBENSG00000138385.1114098.365609915.164700.507703.535702.59040K562KIF1C
    SSBENSG00000138385.1114392.4485011107.478300.373705.262503.92430K562MBNL1
    SSBENSG00000138385.119774.9387016101.84210-0.720106.180804.84650K562METAP2
    SSBENSG00000138385.119487.3550011574.00690-0.286806.609505.40940K562MTPAP
    SSBENSG00000138385.1112427.455707785.531100.674603.667302.61780K562NAA15
    SSBENSG00000138385.1110525.5565012860.07250-0.2890011.7756010.38380K562NSUN2
    SSBENSG00000138385.1117402.9546023988.65320-0.463002.482501.32870K562PABPC1
    SSBENSG00000138385.119355.2934011882.86410-0.345002.913202.05870K562PCBP3
    SSBENSG00000138385.117595.502106327.691500.263402.342201.64950K562PRPF8
    SSBENSG00000138385.115881.125507820.17420-0.411102.523901.66680K562PSIP1
    SSBENSG00000138385.117632.4057010153.28810-0.411704.917304.05620K562PTBP1
    SSBENSG00000138385.1118636.6804022871.40690-0.295405.177303.84810K562PUM2
    SSBENSG00000138385.1112292.116709265.690400.407702.688902.15120K562PUS1
    SSBENSG00000138385.1112861.999509027.889500.5106012.3676011.11760K562RBM15
    SSBENSG00000138385.114775.116607132.68330-0.578904.548603.27490K562RCC2
    SSBENSG00000138385.1115743.8294022744.06030-0.530703.329701.63830K562SBDS
    SSBENSG00000138385.114234.5970012689.14640-1.58330116.30520112.80130K562SF3A3
    SSBENSG00000138385.118517.7536016563.00520-0.959405.542103.41790K562SFPQ
    SSBENSG00000138385.114094.961006761.82230-0.723604.457403.06880K562SRFBP1
    SSBENSG00000138385.1110171.9359013000.26270-0.353906.624605.24630K562SRPK2
    SSBENSG00000138385.117147.964309399.00530-0.395002.223901.30290K562SRSF5
    SSBENSG00000138385.113719.484708760.97220-1.2360070.7655066.39540K562SSB
    SSBENSG00000138385.116898.3053010074.17700-0.546305.271404.27740K562TARDBP
    SSBENSG00000138385.117444.219009717.44510-0.384504.522503.43820K562TIA1
    SSBENSG00000138385.114641.071507521.96800-0.696704.973003.68440K562TIAL1
    SSBENSG00000138385.117872.215609533.57470-0.276202.322501.34020K562TRA2A
    SSBENSG00000138385.115472.655907988.64940-0.545704.175302.96290K562TRIM56
    SSBENSG00000138385.118110.8734013635.78290-0.7495039.5361037.21120K562UPF1
    SSBENSG00000138385.1110874.1588013797.02610-0.343502.756901.55790K562UTP3
    SSBENSG00000138385.118602.7807011667.74890-0.439706.871405.45350K562WDR3
    SSBENSG00000138385.1113404.9607012132.828700.143802.166001.41010K562WDR43
    SSBENSG00000138385.115293.459106602.45530-0.318802.495001.36560K562XRN2
    SSBENSG00000138385.1113804.6500017802.19250-0.366904.365603.24080K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    719 alternative splicing events after Knockdown/Knockout SSB protein :

    Only display 100 entries as example. Please click "View All" button to see all 719 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEMRPL16ENSG00000166902.4chr11-5957620559576345595747085957532259577327595774950.065000.000000.00091includedK562SSB
    SEZNF788ENSG00000188474.6chr19+1222144812221509122211191222124612222060122254910.497000.000020.02552includedK562SSB
    SEDHX9ENSG00000135829.12chr1+1828247111828248481828231751828233131828256661828257070.106000.000050.04417includedK562SSB
    SEZNF207ENSG00000010244.12chr17+3069368330693776306923483069250630694790306949620.136000.000020.01992includedK562SSB
    SEZC3H11AENSG00000058673.11chr1+2037654202037656242037648262037649032037707022037707560.116000.000170.09279includedK562SSB
    SEPSMD6ENSG00000163636.6chr3-6400831864008477640079936400819964008950640091480.159000.000030.03370includedK562SSB
    SEUAP1ENSG00000117143.9chr1+1625625211625625721625601121625603011625675811625676480.196000.000000.00000includedK562SSB
    SEEXO1ENSG00000174371.12chr1+2420124132420125182420120322420123292420137102420138880.201000.000110.07498includedK562SSB
    SEWNK1ENSG00000060237.12chr12+9770319782709712489714369804309805140.232000.000160.08908includedK562SSB
    SEFIP1L1ENSG00000145216.11chr4+5425759654257665542571755425730654265896542660060.182000.000150.08850includedK562SSB
    SEWARSENSG00000140105.13chr14-1008416191008417401008354231008355951008425961008426480.179000.000000.00158includedK562SSB
    SEDDX17ENSG00000100201.14chr22-3888522738885463388840213888412038888060388881200.104000.000070.05678includedK562SSB
    SEMYBENSG00000118513.14chr6+1355206631355207191355200451355201881355212221355213370.081000.000000.00832includedK562SSB
    SEELOVL6ENSG00000170522.5chr4-1110142611110142901109808001109809101110266521110267840.118000.000050.04477includedK562SSB
    SEAP2M1ENSG00000161203.9chr3+1838984321838984381838979561838980391838986361838987720.119000.000080.06073includedK562SSB
    SEWSB1ENSG00000109046.10chr17+2563476925634945256338072563390825636125256362980.203000.000010.01706includedK562SSB
    SEHNRNPDLENSG00000152795.13chr4-8334671583346820833457818334603683347189833472740.085000.000010.01809includedK562SSB
    SEDDX50ENSG00000107625.8chr10+7066766670667726706664667066676370670062706701380.060000.000140.07949includedK562SSB
    SEMBNL2ENSG00000139793.14chr13+9801871298018807980097359800988998043575980463740.429000.000080.06240includedK562SSB
    SERBM41ENSG00000089682.12chrX-1063566261063566981063318561063320691063585811063587860.159000.000100.07210includedK562SSB
    SEGOLGA2ENSG00000167110.12chr9-1310294721310295531310285651310286041310297361310297960.233000.000000.00000includedK562SSB
    SEINSIG1ENSG00000186480.8chr7+1550955341550956051550944561550945561550999501551006700.093000.000190.09655includedK562SSB
    SEPTAR1ENSG00000188647.8chr9-7235563672355692723490657234917072356707723567740.232000.000070.05777includedK562SSB
    SEPRRC2CENSG00000117523.11chr1+1715602901715603431715575171715576441715607251715609860.252000.000030.03397includedK562SSB
    SETUSC3ENSG00000104723.16chr8+1561529915615364156058831560597415621711156219680.192000.000180.09279includedK562SSB
    SESRP9ENSG00000143742.8chr1+2259745632259746872259710012259710702259769412259781680.070000.000090.06524includedK562SSB
    SEARGLU1ENSG00000134884.9chr13-1072099061072099641072094531072094791072117791072120050.107000.000000.00832includedK562SSB
    SEZNF195ENSG00000005801.12chr11-3381949338201833812683381795338297233831190.221000.000010.01013includedK562SSB
    SEFUBP1ENSG00000162613.12chr1-7843470578434768784338487843388778435608784356990.118000.000000.00028includedK562SSB
    SEKIAA0232ENSG00000170871.7chr4+6867918686799068626276865910687330068734090.652000.000000.00000includedK562SSB
    SERPL17ENSG00000265681.2chr18-4701810547018203470179014701795447018644470187690.205000.000000.00047includedK562SSB
    SEBTBD1ENSG00000064726.5chr15-8371882483718930837104798371067783725140837252970.058000.000090.06732includedK562SSB
    SEEZH2ENSG00000106462.6chr7-1485160691485161511485137751485152091485166871485167790.124000.000010.01722includedK562SSB
    SEHNRNPRENSG00000125944.14chr1-2366734423667510236649822366510123670703236708030.134000.000010.01433includedK562SSB
    SESREBF2ENSG00000198911.7chr22+4227466242274762422739454227412742276719422769960.267000.000180.09279includedK562SSB
    SEMARCH6ENSG00000145495.10chr5+1040138910401598104008951040095410402170104022510.093000.000000.00726includedK562SSB
    SEPREPLENSG00000138078.11chr2-4458663544586889445734064457352944588662445889440.250000.000060.05085includedK562SSB
    SEMAXENSG00000125952.14chr14-6554406165544146655431796554338165544630655447540.283000.000010.01685includedK562SSB
    SEUSP10ENSG00000103194.11chr16+8476665884766711847336098473371784767040847671090.094000.000000.00832includedK562SSB
    SEZMYM4ENSG00000146463.7chr1+3586265235862724358621523586227135862977358630630.061000.000060.04848includedK562SSB
    SESRSF7ENSG00000115875.14chr2-3897603938976488389757203897579538976670389768470.087000.000000.00047includedK562SSB
    SECOA1ENSG00000106603.13chr7-4369021043690311436881984368825143769027437690820.219000.000050.04477includedK562SSB
    SERPS24ENSG00000138326.14chr10+7979996179799983797969517979706279800372798004550.065000.000010.01013includedK562SSB
    SEALAS2ENSG00000158578.14chrX-550541835505429055052252550524485505737455057410-0.106000.000120.07596excludedK562SSB
    SESLMO2ENSG00000101166.11chr20-576122455761233557611744576118155761352057613689-0.116000.000000.00034excludedK562SSB
    SEFRG1ENSG00000109536.7chr4+190876191190876306190873316190873442190878552190878657-0.116000.000030.03682excludedK562SSB
    SEPTSENSG00000150787.3chr11+112100930112100953112099316112099396112101348112101405-0.260000.000090.06659excludedK562SSB
    SECPSF4ENSG00000160917.10chr7+9903704699037219990366959903680899042411990424620.095000.000190.03025includedHepG2SSB
    SETHRAP3ENSG00000054118.9chr1+3675965036759842367594513675953636762183367623710.063000.000010.00245includedHepG2SSB
    SEGBASENSG00000146729.5chr7+5605949456059577560525045605257156062586560626810.106000.000630.06988includedHepG2SSB
    SEC9orf85ENSG00000155621.10chr9+7455672074556850745265567452675274561921745620280.080000.000350.04690includedHepG2SSB
    SEDGUOKENSG00000114956.15chr2+7416603674166149741539527415417974173845741740330.112000.000480.05729includedHepG2SSB
    SEGNPDA2ENSG00000163281.7chr4-4471661244716676447129694471315444719129447193120.281000.000510.05921includedHepG2SSB
    SETEX22ENSG00000226174.2chr14+1059156951059157461059117541059118481059163941059164430.338000.000020.00422includedHepG2SSB
    SEITGAEENSG00000083457.7chr17-3626581362667736236003623696362698136270380.156000.000080.01472includedHepG2SSB
    SESPAG9ENSG00000008294.16chr17-4914529249145373491337724913384349156944491570650.087000.000010.00222includedHepG2SSB
    SEDEF8ENSG00000140995.12chr16+9001582490015921900152029001522290020650900207840.260000.000010.00249includedHepG2SSB
    SETPT1-AS1ENSG00000170919.11chr13+4593427545934374459184634591858145944093459443170.269000.000300.04194includedHepG2SSB
    SENDUFA3ENSG00000170906.11chr19+5460965954609753546092405460931854610117546102770.053000.000150.02433includedHepG2SSB
    SESNRNP70ENSG00000104852.10chr19+4960537049606844496046464960472849607890496079920.152000.000000.00000includedHepG2SSB
    SECFBENSG00000243649.4chr6+3189573131895941318954743189557531901386319015600.083000.000030.00745includedHepG2SSB
    SELUC7L3ENSG00000108848.11chr17+4882570048825777488239024882406348826579488267050.074000.000400.05028includedHepG2SSB
    SEITFG3ENSG00000167930.11chr16+2982422983962848422848562995472996530.085000.000470.05622includedHepG2SSB
    SESREBF1ENSG00000072310.12chr17-1772683117726921177234031772383517740040177403010.546000.000000.00000includedHepG2SSB
    SESTARD4ENSG00000164211.8chr5-1108359641108361681108350991108358041108366991108368140.253000.000000.00010includedHepG2SSB
    SEZFAS1ENSG00000177410.8chr20+4789702147897107478956404789574547905581479057970.109000.000010.00373includedHepG2SSB
    SEMYL6ENSG00000092841.14chr12+5655440956554454565540265655410456555170565553710.107000.000000.00001includedHepG2SSB
    SEFKBP14ENSG00000106080.6chr7-3005982830059920300586113005873930062280300624320.114000.000010.00258includedHepG2SSB
    SEING4ENSG00000111653.15chr12-6764803676507967623956762562676589267659640.126000.000010.00224includedHepG2SSB
    SEIVNS1ABPENSG00000116679.11chr1-1852756161852757571852746671852747751852761451852762710.270000.000000.00021includedHepG2SSB
    SECIRBPENSG00000099622.9chr19+1273492127371412719791272050127430512744430.249000.000030.00601includedHepG2SSB
    SEPFDN5ENSG00000123349.9chr12+5368962253689725536893255368942353691633536917080.082000.000000.00004includedHepG2SSB
    SEDHRS4ENSG00000157326.14chr14+2443514024435192244291102442921224435491244356260.065000.000270.03928includedHepG2SSB
    SESUZ12PENSG00000264538.2chr17+2906986729070017290620502906211529070318290703870.232000.000930.08951includedHepG2SSB
    SEALDOAENSG00000149925.12chr16+3007714530077248300757183007582630078554300786870.122000.000000.00057includedHepG2SSB
    SEIL17RBENSG00000056736.5chr3+5388932053889368538868975388702453890870538910130.132000.000020.00495includedHepG2SSB
    SEMVDENSG00000167508.6chr16-8872715588727249887269278872704588729418887295560.304000.000130.02180includedHepG2SSB
    SEERRFI1ENSG00000116285.8chr1-8082452808252780755548075752808621780863560.128000.000550.06210includedHepG2SSB
    SEAPOC1ENSG00000130208.5chr19+4541792845417990454175034541774645418128454182060.081000.000000.00000includedHepG2SSB
    SERAB17ENSG00000124839.8chr2-2384866462384867982384858992384860252384946402384948000.086000.000020.00455includedHepG2SSB
    SESREK1ENSG00000153914.11chr5+6545189265454760654492906544942465455046654551620.368000.000000.00005includedHepG2SSB
    SENPRL3ENSG00000103148.11chr16-1735051735441691241692541805201805900.167000.000460.05553includedHepG2SSB
    SESLC22A7ENSG00000137204.10chr6+4326736443267528432671274326723143267635432678040.199000.001070.09813includedHepG2SSB
    SEPRMT1ENSG00000126457.16chr19+5018312850183263501804295018057350183743501838450.060000.000820.08150includedHepG2SSB
    SETRA2AENSG00000164548.6chr7-2356175023562051235613252356145923571407235715950.144000.000410.05144includedHepG2SSB
    SECPSF3LENSG00000127054.14chr1-1258560125866712563751256473125996012600050.071000.000290.04155includedHepG2SSB
    SESEC31AENSG00000138674.12chr4-8376329283763634837501528375021183765538837656620.071000.000020.00472includedHepG2SSB
    SESEC31AENSG00000138674.12chr4-8378368683783725837788418377891783784470837845450.197000.000000.00001includedHepG2SSB
    SEDRAM1ENSG00000136048.9chr12+1023079511023080101022950681022952111023138861023139790.170000.000670.07181includedHepG2SSB
    SESPTAN1ENSG00000197694.9chr9+1313552611313553211313537551313539041313564531313566520.273000.000000.00000includedHepG2SSB
    SEA1CFENSG00000148584.10chr10-5262379252623840526196015261974552645340526454350.097000.000020.00490includedHepG2SSB
    SEHNRNPA2B1ENSG00000122566.16chr7-2623061226230748262297442623008026232114262321970.107000.000010.00227includedHepG2SSB
    SEHNRNPA2B1ENSG00000122566.16chr7-2623745026237486262372412623735226240191262403660.104000.000000.00001includedHepG2SSB
    SEMACF1ENSG00000127603.19chr1+3993076639930784399292833992935839934286399344040.339000.000030.00601includedHepG2SSB
    SEMACF1ENSG00000127603.19chr1+3994659139946702399454693994568139950272399504020.116000.000000.00000includedHepG2SSB
    SEHSD17B2ENSG00000086696.6chr16+8212376982123838821045468210473282124506821248170.058000.000020.00455includedHepG2SSB
    SESTX16ENSG00000124222.17chr20+5723467857234690572271285722714357242545572426530.154000.000220.03283includedHepG2SSB
    SEATG9AENSG00000198925.6chr2-2200937312200938962200931552200932072200942562200943400.466000.000000.00013includedHepG2SSB
    SEPLD3ENSG00000105223.14chr19+4087145940871492408546104085467540872325408724170.236000.000460.05612includedHepG2SSB
    SESNHG8ENSG00000269893.2chr4+1192001991192002921191999091191999471192005431192005860.150000.000390.04962includedHepG2SSB





    17 RBPs can affect the splicing of SSB :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SESSBENSG00000138385.11chr2+170661983170662087170657461170657536170662174170662349-0.117000.000000.00000excludedK562SRSF1
    SESSBENSG00000138385.11chr2+170661904170662087170657461170657536170662174170662517-0.073000.000000.00000excludedK562SF3B4
    SESSBENSG00000138385.11chr2+170661983170662087170657461170657536170662174170662349-0.110000.000000.00000excludedK562AQR
    SESSBENSG00000138385.11chr2+170661983170662087170657461170657536170662174170662349-0.057000.000000.00000excludedHepG2SRSF1
    A3SSSSBENSG00000138385.11chr2+1706632531706633571706632941706633571706621151706623490.054000.000000.00000longerK562AQR
    A3SSSSBENSG00000138385.11chr2+170661983170662202170662174170662202170657461170657536-0.217000.000000.00000shorterK562AQR
    A5SSSSBENSG00000138385.11chr2+170662507170662752170662507170662623170663294170663357-0.360000.004000.06037shorterK562AQR
    RISSBENSG00000138385.11chr2+1706649861706654121706649861706650631706653691706654120.085000.000000.00000includedK562PUS1
    RISSBENSG00000138385.11chr2+1706649861706654121706649861706650631706653691706654120.051000.000000.00000includedHepG2SF3A3
    RISSBENSG00000138385.11chr2+1706632981706635401706632981706634021706634801706635400.199000.000000.00000includedHepG2SF3A3
    RISSBENSG00000138385.11chr2+1706632981706635401706632981706634021706634801706635400.068000.000000.00000includedK562AKAP8L
    RISSBENSG00000138385.11chr2+1706649861706654121706649861706650631706653691706654120.052000.000000.00000includedK562AQR
    MXESSBENSG00000138385.11chr2+1706574611706575361706619831706620871706553881706554861706621741706623490.084000.002930.049951includedHepG2FTO
    MXESSBENSG00000138385.11chr2+1706574611706575361706619831706620871706553881706554861706621741706623490.091000.000530.011811includedK562SRSF1
    MXESSBENSG00000138385.11chr2+1706574611706575361706619831706620871706553881706554861706621741706623490.107000.000100.007521includedK562LIN28B
    MXESSBENSG00000138385.11chr2+170657461170657536170661983170662087170655388170655486170662174170662349-0.074000.000470.073932includedK562UTP3
    MXESSBENSG00000138385.11chr2+1706574611706575361706619831706620871706553881706554861706621741706623490.079000.003280.025241includedK562AQR
    MXESSBENSG00000138385.11chr2+1706574611706575361706619831706620871706553881706554861706621741706623490.156000.001110.016611includedHepG2SFPQ
    MXESSBENSG00000138385.11chr2+170657461170657536170661983170662087170655388170655486170662174170662349-0.109000.000080.026272includedK562SMNDC1
    MXESSBENSG00000138385.11chr2+1706574611706575361706621741706623491706553881706554861706632941706634020.085000.001570.082641includedK562TRA2A
    MXESSBENSG00000138385.11chr2+1706574611706575361706619831706620871706553881706554861706621741706623490.085000.002280.090961includedK562PHF6
    MXESSBENSG00000138385.11chr2+1706574611706575361706619831706620871706553881706554861706621741706623490.095000.000020.001451includedK562DHX30
    MXESSBENSG00000138385.11chr2+170657461170657536170662174170662349170655388170655486170663294170663402-0.099000.000980.086212includedHepG2XRCC6
    MXESSBENSG00000138385.11chr2+1706574611706575361706621741706623491706553881706554861706632941706634020.101000.000140.005511includedK562SUPV3L1
    MXESSBENSG00000138385.11chr2+170667367170667554170667692170667833170666792170666933170668177170668574-0.076000.009140.091002includedK562HNRNPUL1

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein SSB and its RNA.