C7orf55

General Information

Gene Name       : C7orf55
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C7orf55)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C7orf55 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C7orf55 RNA is bound by 11 proteins.  







eCLIP assay for C7orf55 is not avaliable on ENCORE database.





11 proteins are bound to C7orf55 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7139030263139030484+3'-UTR,CDS,intron-Distal,intron-Proximal4.826516.32078HepG2RPS3
chr7139030344139030499+3'-UTR,CDS,intron-Distal,intron-Proximal3.9500311.91640HepG2LARP4
chr7139026077139026150+5'-UTR,CDS,intron-Distal3.609954.46401K562DDX3X
chr7139026150139026264+CDS,intron-Distal4.0032510.83085K562DDX3X
chr7139030270139030344+CDS,intron-Distal3.532946.35665HepG2LARP4
chr7139025474139025530+intron-Distal3.120957.25345K562NIPBL
chr7139025474139025496+intron-Distal3.6802915.21579HepG2XPO5
chr7139025506139025532+intron-Distal3.7567361.03688HepG2XPO5
chr7139025499139025531+intron-Distal4.89011400.00000K562PUS1
chr7139025439139025452+intron-Distal,intron-Proximal4.274447.72156K562SSB
chr7139025494139025499+intron-Distal4.24778400.00000K562PUS1
chr7139025495139025530+intron-Distal3.006704.34512HepG2SSB
chr7139025477139025521+intron-Distal3.4411722.27805HepG2PCBP1
chr7139025452139025486+intron-Distal,intron-Proximal3.9159044.77258K562SSB
chr7139025527139025531+intron-Distal3.9962710.57638K562SSB
chr7139025510139025523+intron-Distal4.4483353.23803K562SSB
chr7139025440139025495+intron-Distal,intron-Proximal3.177714.57558HepG2SSB
chr7139025511139025532+intron-Distal5.86933400.00000K562NSUN2
chr7139025511139025522+intron-Distal6.12954400.00000K562PCBP1
chr7139025476139025500+intron-Distal3.20945400.00000K562WRN
chr7139025474139025494+intron-Distal3.75170400.00000K562PUS1
chr7139025486139025532+intron-Distal3.0575377.51520K562XRCC6
chr7139025477139025511+intron-Distal5.14266400.00000K562PCBP1
chr7139025496139025506+intron-Distal3.7361659.40003HepG2XPO5
chr7139025491139025511+intron-Distal5.63708400.00000K562NSUN2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C7orf55 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C7orf55 is not available on ENCORE database.

  • 41 RBPs can affect the levels of C7orf55.  








The Knockdown/knockout RNA-Seq assay for C7orf55 is not available on ENCORE database.





41 RBPs can affect the gene expression of C7orf55 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C7orf55ENSG00000164898.856.6295094.75390-0.742602.213801.65730HepG2ACO1
C7orf55ENSG00000164898.8364.15600237.002900.619602.897102.35360HepG2AKAP1
C7orf55ENSG00000164898.890.17290219.95010-1.286404.682703.83060HepG2AUH
C7orf55ENSG00000164898.8137.1538094.693500.534401.881001.31830HepG2CKAP4
C7orf55ENSG00000164898.8160.62970107.059000.585202.715301.97990HepG2DAZAP1
C7orf55ENSG00000164898.879.34490195.07440-1.297806.769105.83670HepG2DDX6
C7orf55ENSG00000164898.817.34890187.45130-3.4336026.5375024.83570HepG2EIF2S1
C7orf55ENSG00000164898.888.26450201.73070-1.192505.498104.55070HepG2EIF4B
C7orf55ENSG00000164898.845.84570100.23730-1.128603.901202.97710HepG2FUBP3
C7orf55ENSG00000164898.8122.96800193.89940-0.657002.647301.99570HepG2G3BP1
C7orf55ENSG00000164898.8108.97320205.92800-0.918204.331703.20590HepG2G3BP2
C7orf55ENSG00000164898.8148.0399097.514400.602202.508001.86330HepG2HNRNPL
C7orf55ENSG00000164898.8132.08460197.07300-0.577302.091001.49510HepG2IGF2BP2
C7orf55ENSG00000164898.8123.49770198.26190-0.682902.513501.56820HepG2KHSRP
C7orf55ENSG00000164898.8137.24360209.16150-0.607902.408601.79550HepG2MAGOH
C7orf55ENSG00000164898.8126.74800210.31350-0.730602.936502.28900HepG2MATR3
C7orf55ENSG00000164898.8148.56150215.25230-0.535002.001901.45890HepG2NCBP2
C7orf55ENSG00000164898.8115.54230191.62650-0.729903.068202.30970HepG2PABPC4
C7orf55ENSG00000164898.8121.54610173.82750-0.516202.060701.52450HepG2PCBP1
C7orf55ENSG00000164898.8184.22520101.347200.862104.407503.67570HepG2PUF60
C7orf55ENSG00000164898.8116.48570211.09510-0.857703.858003.27320HepG2RBM22
C7orf55ENSG00000164898.8166.8949083.536700.998404.527203.23820HepG2RBM27
C7orf55ENSG00000164898.8130.49410196.84560-0.593102.511501.99230HepG2NELFE
C7orf55ENSG00000164898.8128.57290183.33260-0.511901.971001.43870HepG2RECQL
C7orf55ENSG00000164898.8129.04420184.15190-0.513001.980001.46590HepG2SF3B4
C7orf55ENSG00000164898.8141.12100238.40950-0.756502.677302.18130HepG2SRFBP1
C7orf55ENSG00000164898.866.26990156.37500-1.238607.413606.58970HepG2SRSF9
C7orf55ENSG00000164898.878.16300172.76590-1.144306.475405.68000HepG2TAF15
C7orf55ENSG00000164898.8108.60490158.75170-0.547702.078601.35100HepG2TIA1
C7orf55ENSG00000164898.826.2752060.78920-1.210102.705802.08310HepG2U2AF1
C7orf55ENSG00000164898.8143.3963089.829300.674702.970001.40840K562AKAP1
C7orf55ENSG00000164898.8109.70780188.35160-0.779803.095202.48150K562AQR
C7orf55ENSG00000164898.8146.5526086.815700.755302.999802.00180K562BCLAF1
C7orf55ENSG00000164898.8126.8326057.872501.131904.396003.22700K562EFTUD2
C7orf55ENSG00000164898.855.04410100.01980-0.861602.868401.63220K562EIF2S1
C7orf55ENSG00000164898.886.6364047.728100.860002.398701.60960K562FIP1L1
C7orf55ENSG00000164898.815.5420037.03450-1.252701.983101.39710K562G3BP2
C7orf55ENSG00000164898.8125.0105058.022901.107303.958402.21550K562GEMIN5
C7orf55ENSG00000164898.8194.19580131.582300.561402.048401.39190K562GRSF1
C7orf55ENSG00000164898.8173.5607066.688701.379805.175703.70540K562PABPN1
C7orf55ENSG00000164898.8138.7590086.682500.678702.371001.46950K562PCBP2
C7orf55ENSG00000164898.8159.3641056.317101.500607.294906.07950K562PRPF8
C7orf55ENSG00000164898.8117.93230190.90970-0.694903.550102.33160K562PUM1
C7orf55ENSG00000164898.8147.5158093.911700.651402.370101.71330K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C7orf55 is not available on ENCORE database.





1 RBPs can affect the splicing of C7orf55 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC7orf55ENSG00000164898.8chr7+1390296421390297361390253221390253651390302461390305410.328000.000000.00006includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C7orf55 is not avaliable on ENCORE database.