NELFE

General Information

Gene Name       : NELFE
Gene ID             : ENSG00000204356.13
Essential Gene : No

Functions

Localization(RBPImage: NELFE)

Domains (AlphaFold: NELFE)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NELFEENSG00000204356.1327.0046.4136.70ENCSR000AEF
HepG2NELFEENSG00000204356.1381.2967.6574.47ENCSR985KAT
K562NELFEENSG00000204356.13106.91103.45105.18ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq NELFE-BGKLV11-K562ENCSR201WFUNELFEK562ReleasedENCSR129RWD   shRNAKD% = 89.6,91.9
knockdown followed by RNA-seq NELFE-BGHLV12-HepG2ENCSR939ZRANELFEHepG2ReleasedENCSR603TCV   shRNAKD% = 98.3,97.9






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
NELFEENCAB361TEGA301-913A1Released, ENCODE3Released, ENCODE3BGHLV12-69, Released, ENCODE3BGKLV11-45, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
NELFEK562shRNAENCSR201WFUENCSR129RWDRDBP-LV11-45,RDBP-LV11-46Nontarget-LV11-1,nontarget-LV11-289.6,91.9ReleasedENCODE3
NELFEHepG2shRNAENCSR939ZRAENCSR603TCVRDBP-BGHLV12-69,RDBP-BGHLV12-70NT-BGHLV12-93,NT-BGHLV12-9498.3,97.9ReleasedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    NELFE: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Cytoplasm
  • Cytosolic












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    NELFEProduct_ID: A301-913A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: NELFE-human    		 HepG2_Bethyl_A301-913A_2_RDBP.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using RDBP specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-RDBP antibody (lanes under 'RDBP').
    		 NELFE_RDBP_Secondary_Western.png<br>Caption: Western blot following shRNA against NELFE/RDBP in K562 and HepG2 whole cell lysate using NELFE/RDBP specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 2 and 3 are two different shRNAs against NELFE/RDBP. Lanes 5-7 follow the same pattern, but in HepG2. NELFE/RDBP protein appears as the green band, GAPDH serves as a control and appears in red.
    		 K562_Bethyl_A301-913A_2_RDBP.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using RDBP specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-RDBP antibody (lanes under 'RDBP').
    		 NELFE_RDBP_Secondary_Western.png<br>Caption: Western blot following shRNA against NELFE/RDBP in K562 and HepG2 whole cell lysate using NELFE/RDBP specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 2 and 3 are two different shRNAs against NELFE/RDBP. Lanes 5-7 follow the same pattern, but in HepG2. NELFE/RDBP protein appears as the green band, GAPDH serves as a control and appears in red.








    RNA Targets

    • eCLIP assay for NELFE is not avaliable on ENCORE database.



    Proteins bound to RNA
    • NELFE RNA is bound by 19 proteins.  







    eCLIP assay for NELFE is not avaliable on ENCORE database.





    19 proteins are bound to NELFE RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr63192001331920083-3'-UTR,CDS,intron-Distal5.2013013.04183K562PABPC4
    chr63192299531923009-3'-UTR,CDS,intron-Distal,intron-Proximal5.292206.46301HepG2PPIG
    chr63192285031922870-3'-UTR,CDS,intron-Distal,intron-Proximal3.205793.31745K562ZNF622
    chr63192475631924787-3'-UTR,CDS,intron-Distal4.538126.36347HepG2PPIG
    chr63192244331922571-3'-UTR,CDS,intron-Distal,intron-Proximal3.052597.31003HepG2GRWD1
    chr63192299731923049-3'-UTR,CDS,intron-Distal3.512846.14048K562ZNF622
    chr63192472931924787-3'-UTR,5'-UTR,CDS,intron-Distal5.275549.54318K562UCHL5
    chr63192445431924510-3'-UTR,CDS,intron-Distal,intron-Proximal4.284525.34978HepG2PRPF8
    chr63192473031924789-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.874156.06370HepG2BUD13
    chr63192452131924561-3'-UTR,CDS,intron-Distal3.294783.73423K562UCHL5
    chr63192455931924603-3'-UTR,CDS,intron-Distal3.345604.49055K562YBX3
    chr63192472631924756-3'-UTR,5'-UTR,CDS,intron-Distal3.659223.47879HepG2PPIG
    chr63192257731922657-3'-UTR,CDS,intron-Distal,intron-Proximal3.221196.71582HepG2PPIG
    chr63192472731924788-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.140428.46305K562ZNF622
    chr63192233131922553-3'-UTR,CDS,intron-Distal,intron-Proximal3.138268.05636HepG2G3BP1
    chr63192460931924667-3'-UTR,CDS,intron-Distal,intron-Proximal4.517036.41037HepG2BUD13
    chr63192472031924788-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.391965.85200K562BUD13
    chr63192474031924798-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.373805.40420HepG2AQR
    chr63192252731922662-3'-UTR,CDS,intron-Distal,intron-Proximal3.089877.34382K562UCHL5
    chr63192447531924521-3'-UTR,CDS,intron-Distal4.321645.80295HepG2PPIG
    chr63192474131924786-3'-UTR,5'-UTR,CDS,intron-Distal3.331593.45280HepG2BCLAF1
    chr63192472731924787-3'-UTR,5'-UTR,CDS,intron-Distal3.149367.10982HepG2GRWD1
    chr63192447331924505-3'-UTR,CDS,intron-Distal4.254044.45558HepG2GRWD1
    chr63192456731924616-3'-UTR,CDS,intron-Distal,intron-Proximal3.364643.50696K562BUD13
    chr63192284331922873-3'-UTR,CDS,intron-Distal,intron-Proximal5.428717.95724HepG2PPIG
    chr63192666631926733-5'-UTR,intron-Distal,intron-Proximal4.995468.20930HepG2DDX3X
    chr63192618731926232-5'-UTR,CDS,intron-Distal,intron-Proximal3.166474.20287HepG2DDX3X
    chr63192615631926233-5'-UTR,CDS,intron-Distal,intron-Proximal6.3770733.50458K562DDX3X
    chr63192666731926725-5'-UTR,intron-Distal,intron-Proximal5.7349719.04529K562DDX3X
    chr63192666431926739-5'-UTR,intron-Distal,intron-Proximal3.523876.60989HepG2NCBP2
    chr63192155631921667-CDS,intron-Distal,intron-Proximal3.039796.45834HepG2LSM11
    chr63192156431921630-CDS,intron-Distal,intron-Proximal4.4851520.51637HepG2U2AF2
    chr63192218231922216-CDS,intron-Distal3.422564.65365HepG2GRWD1
    chr63192615731926221-CDS,intron-Distal3.555444.77481HepG2BUD13
    chr63192218131922217-CDS,intron-Distal4.148567.55042HepG2PPIG
    chr63192232931922403-CDS,intron-Distal,intron-Proximal4.089367.31338HepG2SRSF1
    chr63192234631922419-CDS,intron-Distal4.257414.67436K562GRWD1
    chr63192150831921556-CDS,intron-Distal,intron-Proximal3.481796.47139HepG2PPIG
    chr63192232931922414-CDS,intron-Distal,intron-Proximal3.263923.40391K562XRCC6
    chr63192232831922389-CDS,intron-Distal,intron-Proximal3.798517.65975HepG2BCLAF1
    chr63192233131922340-CDS,intron-Distal,intron-Proximal3.055234.17822HepG2PPIG
    chr63192159131921653-CDS,intron-Distal,intron-Proximal4.268389.29543K562AQR
    chr63192616531926222-CDS,intron-Distal3.8796810.13507HepG2GRWD1
    chr63192615031926195-CDS,intron-Distal3.193823.36903K562MTPAP
    chr63192234031922411-CDS,intron-Distal3.545109.91328HepG2PPIG
    chr63192152931921562-CDS,intron-Distal,intron-Proximal5.1003830.51859K562YBX3
    chr63192246431922507-CDS,intron-Distal,intron-Proximal3.427885.95375K562ZNF622
    chr63192175431921858-CDS,intron-Distal,intron-Proximal3.861538.10412K562PRPF8
    chr63192262031922665-CDS,intron-Distal,intron-Proximal3.296393.45280HepG2BCLAF1
    chr63192242331922527-CDS,intron-Distal,intron-Proximal5.250038.43384K562UCHL5
    chr63192152931921552-CDS,intron-Distal,intron-Proximal3.453934.27261HepG2GRWD1
    chr63192207331922116-CDS,intron-Distal,intron-Proximal3.723015.35682HepG2GRWD1
    chr63192188531921911-CDS,intron-Distal3.011674.75490HepG2GRWD1
    chr63192156231921571-CDS,intron-Distal4.4595324.76841K562YBX3
    chr63192179431921856-intron-Distal,intron-Proximal4.4252315.12840K562AQR
    chr63192192931922007-intron-Distal,intron-Proximal5.100585.43043K562EFTUD2
    chr63192441131924455-intron-Distal,intron-Proximal4.405174.22101K562PRPF8
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for NELFE is not avaliable on ENCORE database.



    Diffrential Expression
    • 11,122 differentially expressed genes after Knockdown/Knockout NELFE protein.  





    • 64 RBPs can affect the levels of NELFE.  







    11,122 differentially expressed genes after Knockdown/Knockout NELFE protein :

    Only display 100 entries as example. Please click "View All" button to see all 11,122 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    DPM1ENSG00000000419.81486.678102270.94610-0.6112014.0119012.96990HepG2NELFE
    C1orf112ENSG00000000460.12411.15620294.988100.478902.371701.86390HepG2NELFE
    FUCA2ENSG00000001036.93103.091403842.26930-0.308302.601602.07400HepG2NELFE
    NFYAENSG00000001167.101203.61110990.790800.280602.546702.02470HepG2NELFE
    NIPAL3ENSG00000001461.12325.50520440.25390-0.435702.862202.31360HepG2NELFE
    CYP51A1ENSG00000001630.113445.8578013931.89290-2.01550150.62650148.26900HepG2NELFE
    RAD52ENSG00000002016.12340.99800219.724900.634004.151903.51320HepG2NELFE
    MYH16ENSG00000002079.813.250401.764402.908702.040201.56050HepG2NELFE
    BADENSG00000002330.9237.15630149.730500.663403.277302.69860HepG2NELFE
    LAP3ENSG00000002549.81731.767802367.36480-0.451008.137707.29680HepG2NELFE
    CD99ENSG00000002586.132968.415703393.14740-0.192902.380801.87230HepG2NELFE
    MAD1L1ENSG00000002822.11579.84980407.414500.509104.443603.78690HepG2NELFE
    LASP1ENSG00000002834.1311023.007508000.655000.4622014.1756013.12980HepG2NELFE
    SNX11ENSG00000002919.10413.43800543.32680-0.394102.876302.32700HepG2NELFE
    M6PRENSG00000003056.32164.628702540.01260-0.230702.778402.23660HepG2NELFE
    CYP26B1ENSG00000003137.410.955600.0000099999.999902.886002.33600HepG2NELFE
    DBNDD1ENSG00000003249.91323.47920841.711000.652808.267107.42230HepG2NELFE
    CASP10ENSG00000003400.10737.776101232.29390-0.7401013.2579012.23380HepG2NELFE
    TFPIENSG00000003436.105202.9621022511.21020-2.11320268.84100265.92060HepG2NELFE
    RBM5ENSG00000003756.123029.316702558.595900.243503.256102.67880HepG2NELFE
    MTMR7ENSG00000003987.90.9367014.47790-3.950103.032402.47060HepG2NELFE
    SLC7A2ENSG00000003989.122786.8722014191.01360-2.34830299.52290296.52290HepG2NELFE
    SARM1ENSG00000004139.956.9368013.381402.089004.979304.28960HepG2NELFE
    POLDIP2ENSG00000004142.72569.787703051.62640-0.247902.162801.67260HepG2NELFE
    AK2ENSG00000004455.122421.595104377.24700-0.8541034.6166033.16120HepG2NELFE
    FKBP4ENSG00000004478.51323.068402083.65620-0.6552015.3580014.27790HepG2NELFE
    RECQLENSG00000004700.11919.12080630.652000.543306.627405.85100HepG2NELFE
    ARHGAP33ENSG00000004777.14271.56960117.196201.2123010.048809.13650HepG2NELFE
    NDUFAB1ENSG00000004779.51585.540202319.55400-0.5489012.0387011.06100HepG2NELFE
    SLC25A13ENSG00000004864.92173.655701892.458500.199801.987701.51300HepG2NELFE
    ST7ENSG00000004866.14396.30980530.02390-0.419401.982901.50870HepG2NELFE
    CDC27ENSG00000004897.73145.095102766.221900.185102.063701.58200HepG2NELFE
    DVL2ENSG00000004975.7912.155401215.60660-0.414305.099604.40210HepG2NELFE
    SKAP2ENSG00000005020.81388.14280630.107701.1394031.2079029.80820HepG2NELFE
    SLC25A5ENSG00000005022.55506.1866011155.03600-1.0186020.7020019.48970HepG2NELFE
    POLR2JENSG00000005075.11602.36550801.71570-0.412503.841403.22400HepG2NELFE
    LIG3ENSG00000005156.7697.41540881.37320-0.337702.936002.38090HepG2NELFE
    RPAP3ENSG00000005175.5728.31460551.843700.400203.377602.79220HepG2NELFE
    ACSM3ENSG00000005187.71594.148801846.74960-0.212202.192801.69990HepG2NELFE
    SPPL2BENSG00000005206.12729.11260452.620800.687708.889408.02040HepG2NELFE
    MSL3ENSG00000005302.13367.13760264.284100.474102.913702.36070HepG2NELFE
    CREBBPENSG00000005339.82215.651801688.101400.392205.779705.04320HepG2NELFE
    WDR54ENSG00000005448.12343.49150232.838200.560803.695003.08740HepG2NELFE
    CROTENSG00000005469.7515.60490317.352100.700106.814606.03140HepG2NELFE
    ABCB4ENSG00000005471.11516.117801248.38820-1.2743035.8174034.34310HepG2NELFE
    KMT2EENSG00000005483.152218.025101852.169900.260003.198702.62550HepG2NELFE
    RHBDD2ENSG00000005486.121336.44700946.297400.497907.224706.42170HepG2NELFE
    IBTKENSG00000005700.102171.387202822.67780-0.378406.475805.70720HepG2NELFE
    ZNF195ENSG00000005801.12671.80430418.153400.683908.125807.28560HepG2NELFE
    ITGALENSG00000005844.1372.01610273.86050-1.9270020.1180018.91730HepG2NELFE
    PDK2ENSG00000005882.7682.68140853.01930-0.321402.784802.24260HepG2NELFE
    ITGA3ENSG00000005884.13274.0894017.091604.0032032.4404031.02130HepG2NELFE
    LAMP2ENSG00000005893.113471.006006500.96170-0.9053044.2131042.63770HepG2NELFE
    ASB4ENSG00000005981.882.3621039.266001.068602.860302.31210HepG2NELFE
    GDE1ENSG00000006007.72326.563402647.41840-0.186402.113501.62800HepG2NELFE
    C19orf60ENSG00000006015.13139.0660070.472700.980503.949403.32470HepG2NELFE
    OSBPL7ENSG00000006025.7398.27480140.306501.5051018.7210017.55750HepG2NELFE
    TMEM98ENSG00000006042.71486.102302979.30260-1.0034016.9221015.80340HepG2NELFE
    MAP3K14ENSG00000006062.9177.32300116.091500.611001.782401.32790HepG2NELFE
    TMEM132AENSG00000006118.101379.83260852.273000.6950013.6884012.65530HepG2NELFE
    AP2B1ENSG00000006125.125549.666406392.31950-0.203903.131002.56230HepG2NELFE
    ZNF263ENSG00000006194.6724.76390859.10400-0.245301.783501.32890HepG2NELFE
    CX3CL1ENSG00000006210.63117.257204113.62170-0.400108.331507.48420HepG2NELFE
    SPATA20ENSG00000006282.152636.672601494.929100.8185025.9525024.63560HepG2NELFE
    TNFRSF12AENSG00000006327.91087.80920598.344200.8623016.2516015.14840HepG2NELFE
    DLX6ENSG00000006377.9253.96790168.557500.591302.880402.33070HepG2NELFE
    MAP3K9ENSG00000006432.11805.61880478.946800.7501010.629909.69750HepG2NELFE
    RALAENSG00000006451.3761.974301110.46880-0.543407.807606.98080HepG2NELFE
    JHDM1DENSG00000006459.6762.293602192.59440-1.5242018.7598017.59480HepG2NELFE
    AGKENSG00000006530.11535.46740683.09720-0.351302.704802.16840HepG2NELFE
    ALDH3B1ENSG00000006534.11398.84000157.950401.3362015.7729014.68080HepG2NELFE
    PHTF2ENSG00000006576.12556.28760370.506700.586205.190104.48720HepG2NELFE
    FARP2ENSG00000006607.91593.994201197.888700.412105.343704.63150HepG2NELFE
    DBF4ENSG00000006634.3636.92530431.584400.561405.372404.65860HepG2NELFE
    COX10ENSG00000006695.6338.39440536.37210-0.664506.574905.80080HepG2NELFE
    ELAC2ENSG00000006744.141206.37160809.070200.576208.847507.98040HepG2NELFE
    ARSDENSG00000006756.11552.83100428.673900.366902.543402.02180HepG2NELFE
    PNPLA4ENSG00000006757.7295.87500398.48970-0.429602.732602.19400HepG2NELFE
    ADIPOR2ENSG00000006831.92578.171207060.04600-1.4533091.6391089.64540HepG2NELFE
    MARK4ENSG00000007047.10812.550201224.00350-0.591104.329603.68040HepG2NELFE
    CCDC124ENSG00000007080.6420.22540288.078500.544602.693302.15780HepG2NELFE
    PAFAH1B1ENSG00000007168.83074.408202397.537300.358706.261405.50260HepG2NELFE
    TRAPPC6AENSG00000007255.6204.71070319.93690-0.644204.182803.54240HepG2NELFE
    SCN4AENSG00000007314.721.442905.474601.969602.018701.54090HepG2NELFE
    PAX6ENSG00000007372.1635.580300.486406.192502.935902.38090HepG2NELFE
    RPUSD1ENSG00000007376.3318.95330189.940500.747705.111904.41310HepG2NELFE
    RHBDF1ENSG00000007384.11440.26060128.537001.7761026.4537025.12970HepG2NELFE
    LUC7LENSG00000007392.121300.785801004.880600.372302.082001.59850HepG2NELFE
    PIGQENSG00000007541.10755.53220326.499901.2103021.9386020.69760HepG2NELFE
    E2F2ENSG00000007968.6221.28160132.935800.735103.476502.88490HepG2NELFE
    PSMB1ENSG00000008018.83514.524805478.32790-0.6404021.6284020.39660HepG2NELFE
    JARID2ENSG00000008083.91238.644401040.848900.250902.315101.81120HepG2NELFE
    CDKL5ENSG00000008086.6148.4307060.525401.294106.197205.44170HepG2NELFE
    CDK11AENSG00000008128.18665.33350460.556500.530605.452704.73440HepG2NELFE
    CYTH3ENSG00000008256.11320.22490152.228601.072709.145208.26520HepG2NELFE
    SYPL1ENSG00000008282.31410.972502221.77780-0.6550015.5877014.50020HepG2NELFE
    SPAG9ENSG00000008294.163402.333805457.91330-0.6818024.0876022.80610HepG2NELFE
    AASSENSG00000008311.10967.45680544.633600.8288012.8875011.87850HepG2NELFE
    PLEKHG6ENSG00000008323.11368.17110827.54720-1.1685020.2577019.05330HepG2NELFE
    MGST1ENSG00000008394.81190.114802816.69250-1.2429055.6652053.97350HepG2NELFE
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    64 RBPs can affect the gene expression of NELFE :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    NELFEENSG00000204356.71393.901101027.563400.439803.034701.94430HepG2AKAP8
    NELFEENSG00000204356.7904.307501185.72470-0.390902.685201.91090HepG2ASCC1
    NELFEENSG00000204356.7967.783201536.67810-0.6671013.8310012.50570HepG2AUH
    NELFEENSG00000204356.71225.32440907.688600.432802.261001.41790HepG2BCCIP
    NELFEENSG00000204356.7560.32660788.60790-0.493003.179702.21450HepG2BCLAF1
    NELFEENSG00000204356.71696.65510964.575700.814608.042107.08580HepG2BOP1
    NELFEENSG00000204356.7793.274901057.11590-0.414203.741002.31690HepG2BUD13
    NELFEENSG00000204356.7781.782101126.52360-0.527004.419403.45360HepG2CIRBP
    NELFEENSG00000204356.71285.81540833.478500.625403.760502.86270HepG2CNOT7
    NELFEENSG00000204356.71564.765201283.800400.285403.450502.75000HepG2CELF1
    NELFEENSG00000204356.7863.972401372.73810-0.668006.721005.78720HepG2DDX3X
    NELFEENSG00000204356.7907.818701179.26610-0.377402.260301.69660HepG2DDX6
    NELFEENSG00000204356.7819.378201133.60190-0.468303.509402.84620HepG2EIF2S1
    NELFEENSG00000204356.7402.17780887.05140-1.141205.823604.35100HepG2FTO
    NELFEENSG00000204356.7748.95890982.78720-0.392004.659503.42280HepG2HDGF
    NELFEENSG00000204356.7828.103301187.40190-0.519904.754903.86030HepG2HNRNPK
    NELFEENSG00000204356.71472.599701257.119100.228102.911602.22230HepG2HNRNPL
    NELFEENSG00000204356.7822.336001191.84570-0.535404.425703.58730HepG2IGF2BP2
    NELFEENSG00000204356.71287.85260895.243900.5245010.699209.35690HepG2ILF2
    NELFEENSG00000204356.71736.917201368.555000.343804.230303.28730HepG2NOL12
    NELFEENSG00000204356.7630.53610849.41830-0.429903.031202.24810HepG2NSUN2
    NELFEENSG00000204356.71131.34770867.535100.382904.552403.49650HepG2PARN
    NELFEENSG00000204356.7783.389501137.34150-0.537908.574307.60300HepG2PCBP1
    NELFEENSG00000204356.7837.293401056.86200-0.336003.506502.64620HepG2PRPF4
    NELFEENSG00000204356.7496.37950688.20520-0.471403.369302.48610HepG2PRPF8
    NELFEENSG00000204356.7367.828401287.93490-1.8080054.8709053.18700HepG2NELFE
    NELFEENSG00000204356.71118.99160780.507400.519608.518807.47900HepG2SAFB2
    NELFEENSG00000204356.7752.49690948.19340-0.333502.140701.51450HepG2SF3B1
    NELFEENSG00000204356.71188.60630910.221600.384905.742104.86860HepG2SMN1
    NELFEENSG00000204356.71287.600701665.56730-0.371305.982005.32310HepG2SRFBP1
    NELFEENSG00000204356.7755.772001290.05990-0.7714012.1766010.99000HepG2SRSF5
    NELFEENSG00000204356.71037.916401300.22630-0.325104.217703.38500HepG2SRSF7
    NELFEENSG00000204356.7661.229801023.12580-0.6298011.0806010.10530HepG2SRSF9
    NELFEENSG00000204356.71200.752801446.07370-0.268203.117402.58020HepG2SSB
    NELFEENSG00000204356.7877.804401130.31060-0.364703.762803.12530HepG2TAF15
    NELFEENSG00000204356.71064.69900851.680500.322002.782702.28080HepG2TIAL1
    NELFEENSG00000204356.7836.546901218.78620-0.542905.181804.33690HepG2U2AF1
    NELFEENSG00000204356.71255.15680813.271500.626003.592602.43790HepG2UPF2
    NELFEENSG00000204356.7693.963601042.99210-0.5878010.213609.05950HepG2ZC3H8
    NELFEENSG00000204356.72768.048702225.983600.314304.792804.08050K562AGGF1
    NELFEENSG00000204356.71923.877502439.22350-0.342402.853202.25720K562AQR
    NELFEENSG00000204356.71543.470601233.575600.323202.248901.46780K562BOP1
    NELFEENSG00000204356.71421.462701132.178500.328202.896801.83120K562DDX3X
    NELFEENSG00000204356.73535.902002303.578500.6181017.8770016.34940K562DDX47
    NELFEENSG00000204356.71172.78530887.914200.401304.107203.14660K562EIF3G
    NELFEENSG00000204356.72230.031401580.947100.496205.678304.43650K562FIP1L1
    NELFEENSG00000204356.7857.237601131.32070-0.400202.793701.87450K562FTO
    NELFEENSG00000204356.71452.724001230.095500.239902.173701.62570K562FXR1
    NELFEENSG00000204356.7441.80860826.19700-0.903105.383504.32160K562G3BP2
    NELFEENSG00000204356.71628.913601252.130700.379402.925902.10930K562GPKOW
    NELFEENSG00000204356.73131.240302534.260500.305102.881802.11250K562GRSF1
    NELFEENSG00000204356.72728.078502081.767300.390004.446403.07110K562HNRNPL
    NELFEENSG00000204356.72244.200801300.400000.787105.895904.47040K562HNRNPM
    NELFEENSG00000204356.73831.929102143.360700.8381015.5718013.77050K562HSPD1
    NELFEENSG00000204356.71679.031301282.970500.388003.953102.83570K562MATR3
    NELFEENSG00000204356.7853.668301143.81760-0.422103.597602.48550K562PCBP2
    NELFEENSG00000204356.71985.312001650.365700.266502.446501.69590K562POLR2G
    NELFEENSG00000204356.72803.181401794.757500.643208.990707.29740K562PPIG
    NELFEENSG00000204356.71566.231601249.157300.326203.037302.34490K562PTBP1
    NELFEENSG00000204356.72802.525303352.53300-0.258502.044901.34300K562PUF60
    NELFEENSG00000204356.797.788001260.20980-3.6879095.0337090.65700K562NELFE
    NELFEENSG00000204356.72502.112501251.480000.9994014.6778012.77270K562RPS19
    NELFEENSG00000204356.72266.714401912.577100.245002.219301.48260K562SF3A3
    NELFEENSG00000204356.71115.52660858.658000.377502.366201.57780K562SF3B4
    NELFEENSG00000204356.71692.147501959.47700-0.211602.589401.67900K562SRPK2
    NELFEENSG00000204356.7926.720301224.65970-0.402203.858103.02940K562SRSF1
    NELFEENSG00000204356.71638.662401239.286600.402903.416702.62680K562TARDBP
    NELFEENSG00000204356.7628.69920826.75690-0.395103.461902.56460K562U2AF2
    NELFEENSG00000204356.72368.378202055.182100.204502.451801.77400K562UPF1
    NELFEENSG00000204356.72276.601502748.00190-0.271502.286101.51350K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for NELFE is not available on ENCORE database.





    28 RBPs can affect the splicing of NELFE :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    A3SSNELFEENSG00000204356.7chr6-319223313192266931922331319226543192283531922873-0.214000.000000.00073shorterK562PPIL4
    A3SSNELFEENSG00000204356.7chr6-319223313192266931922331319226543192283531922873-0.201000.000220.01570shorterK562SF3B4
    A3SSNELFEENSG00000204356.7chr6-3192254931922684319225493192257931922835319230580.152000.017620.08559longerK562AQR
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.053000.002130.07165includedHepG2AKAP1
    RINELFEENSG00000204356.7chr6-319223313192287331922331319226543192283531922873-0.220000.002370.03609excludedK562SF3B4
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.178000.000000.00000includedHepG2DDX6
    RINELFEENSG00000204356.7chr6-319223313192287331922331319226543192283531922873-0.229000.000000.00015excludedK562PPIL4
    RINELFEENSG00000204356.7chr6-3192233131922873319223313192266931922835319228730.234000.000000.00001includedHepG2PCBP2
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.226000.000000.00000includedHepG2PCBP2
    RINELFEENSG00000204356.7chr6-3192233131922873319223313192266931922835319228730.219000.000000.00000includedHepG2SF3A3
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.109000.000000.00024includedHepG2DDX3X
    RINELFEENSG00000204356.7chr6-3192233131922873319223313192266931922835319228730.257000.000000.00000includedHepG2PRPF8
    RINELFEENSG00000204356.7chr6-319215053192191131921505319216083192185631921911-0.055000.000000.00001excludedK562HNRNPUL1
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.160000.000000.00000includedHepG2MATR3
    RINELFEENSG00000204356.7chr6-319215053192191131921505319216083192185631921911-0.089000.000060.02056excludedHepG2EIF3D
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.166000.000000.00000includedHepG2FTO
    RINELFEENSG00000204356.7chr6-3192233131922873319223313192266931922835319228730.070000.000880.01438includedHepG2PCBP1
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.190000.000000.00000includedHepG2QKI
    RINELFEENSG00000204356.7chr6-319223313192287331922331319226543192283531922873-0.183000.001400.08653excludedK562XRN2
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.051000.000010.00023includedK562AKAP8L
    RINELFEENSG00000204356.7chr6-3192233131922873319223313192265431922835319228730.191000.002600.02609includedHepG2TAF15
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.097000.000090.00173includedHepG2TAF15
    RINELFEENSG00000204356.7chr6-319215053192191131921505319216083192185631921911-0.060000.000000.00042excludedK562KHSRP
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.095000.000000.00009includedHepG2G3BP1
    RINELFEENSG00000204356.7chr6-3192233131922873319223313192266931922835319228730.206000.000000.00000includedHepG2TIAL1
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.158000.000000.00000includedHepG2NCBP2
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.116000.000000.00007includedHepG2SF3B4
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.088000.000030.00076includedHepG2HNRNPK
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.051000.000020.00053includedK562UTP18
    RINELFEENSG00000204356.7chr6-3192233131922873319223313192266931922835319228730.200000.000000.00000includedK562AQR
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.158000.000000.00000includedK562AQR
    RINELFEENSG00000204356.7chr6-3192233131922873319223313192266931922835319228730.064000.000050.00612includedHepG2LARP4
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.056000.000000.00039includedK562GPKOW
    RINELFEENSG00000204356.7chr6-3192233131922873319223313192265431922835319228730.159000.001900.08573includedHepG2SSB
    RINELFEENSG00000204356.7chr6-3192150531921911319215053192160831921856319219110.073000.000570.03884includedHepG2SSB
    RINELFEENSG00000204356.7chr6-319215053192191131921505319216083192185631921911-0.053000.000040.00184excludedK562PTBP1

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for NELFE is not avaliable on ENCORE database.