RPAP3

General Information

Gene Name       : RPAP3
Gene ID             : ENSG00000005175.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RPAP3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPAP3ENSG00000005175.933.3033.4333.36ENCSR000AEF
HepG2RPAP3ENSG00000005175.912.2228.7320.48ENCSR985KAT
K562RPAP3ENSG00000005175.953.7861.9657.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPAP3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RPAP3 RNA is bound by 13 proteins.  







eCLIP assay for RPAP3 is not avaliable on ENCORE database.





13 proteins are bound to RPAP3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr124809524648095264-5'-UTR,CDS,intron-Distal,intron-Proximal3.969143.02457HepG2BCLAF1
chr124809530848095387-5'-UTR,CDS,intron-Distal4.2481011.93878K562UCHL5
chr124809973448099788-5'-UTR,intron-Distal,intron-Proximal4.476636.82597K562DDX3X
chr124809659348096632-5'-UTR,CDS,intron-Distal,intron-Proximal3.446174.69091K562DDX3X
chr124809972348099828-5'-UTR,intron-Distal,intron-Proximal3.176723.16816HepG2NCBP2
chr124806383648063907-CDS,intron-Distal,intron-Proximal3.559684.35635K562PRPF8
chr124809647048096490-CDS,intron-Distal,intron-Proximal3.720584.40383K562UCHL5
chr124807542348075482-CDS,intron-Distal,intron-Proximal3.427894.88100K562AQR
chr124808058848080652-CDS,intron-Distal3.463084.92880K562ZNF622
chr124808908448089245-intron-Distal3.128873.46531K562KHSRP
chr124808886048088882-intron-Distal4.679308.75579K562PTBP1
chr124808238248082482-intron-Distal4.757947.24774K562KHSRP
chr124806899148069075-intron-Distal4.538924.24113K562MATR3
chr124808883948088928-intron-Distal4.764596.08961HepG2PTBP1
chr124807082948070879-intron-Distal4.380898.21325K562EXOSC5
chr124806898448069039-intron-Distal5.6052210.01029K562EXOSC5
chr124806066848060762-intron-Distal,intron-Proximal4.699066.80456K562KHSRP
chr124806842948068483-intron-Distal4.554054.40618K562PTBP1
chr124808113248081221-intron-Distal3.830573.42844K562KHSRP
chr124806839048068440-intron-Distal3.061823.18966K562MATR3
chr124807142448071517-intron-Distal5.474758.03988K562EXOSC5
chr124806911648069157-intron-Distal4.389794.80466K562EXOSC5
chr124807050748070559-intron-Distal5.203188.03988K562EXOSC5
chr124807016648070213-intron-Distal3.546024.61282K562EXOSC5
chr124806577148065844-intron-Distal3.442144.41421K562PTBP1
chr124806824848068336-intron-Distal4.304834.18579K562MATR3
chr124807081648070871-intron-Distal3.921933.53404K562HNRNPM
chr124808026448080345-intron-Distal4.070893.60944K562TARDBP
chr124808883348088860-intron-Distal4.862388.54663K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPAP3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPAP3 is not available on ENCORE database.

  • 73 RBPs can affect the levels of RPAP3.  








The Knockdown/knockout RNA-Seq assay for RPAP3 is not available on ENCORE database.





73 RBPs can affect the gene expression of RPAP3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPAP3ENSG00000005175.5592.23790469.283600.335602.689502.08950HepG2ACO1
RPAP3ENSG00000005175.51333.74110671.055700.9909011.5738010.55900HepG2AKAP1
RPAP3ENSG00000005175.5630.03930782.47480-0.312602.543501.88080HepG2AUH
RPAP3ENSG00000005175.5313.94580436.97050-0.477002.089201.30400HepG2BCLAF1
RPAP3ENSG00000005175.5880.202701222.97400-0.474504.346103.61540HepG2BOP1
RPAP3ENSG00000005175.5425.11640297.650900.514101.963301.32440HepG2CNOT7
RPAP3ENSG00000005175.5732.269101122.77270-0.616606.200105.20170HepG2CPSF6
RPAP3ENSG00000005175.5542.72810718.84940-0.405503.959303.09780HepG2DAZAP1
RPAP3ENSG00000005175.5514.89650395.022000.382202.192701.38980HepG2DDX24
RPAP3ENSG00000005175.5272.38010494.39360-0.860005.733704.66810HepG2DDX55
RPAP3ENSG00000005175.5380.86170552.12710-0.535702.934502.30000HepG2DDX6
RPAP3ENSG00000005175.5288.61710412.13140-0.513903.206302.15480HepG2DHX30
RPAP3ENSG00000005175.5291.66000427.30560-0.551004.278003.42000HepG2DNAJC21
RPAP3ENSG00000005175.5294.06160423.51320-0.526304.626603.81920HepG2DNAJC2
RPAP3ENSG00000005175.5253.60420530.88120-1.0658010.148809.05520HepG2EIF2S1
RPAP3ENSG00000005175.5408.10380679.25350-0.735005.134904.04570HepG2EIF4G2
RPAP3ENSG00000005175.5415.14470549.09810-0.403401.929501.36890HepG2G3BP1
RPAP3ENSG00000005175.5909.142401272.79410-0.485403.611402.88850HepG2GPKOW
RPAP3ENSG00000005175.5377.33310660.56820-0.8079011.595309.92290HepG2HNRNPA2B1
RPAP3ENSG00000005175.5540.87150734.08940-0.440704.129303.27180HepG2HNRNPF
RPAP3ENSG00000005175.5445.29080654.86400-0.556405.330904.42120HepG2HNRNPL
RPAP3ENSG00000005175.5615.121801214.64690-0.9816013.5597012.30680HepG2HNRNPLL
RPAP3ENSG00000005175.5486.24390722.87640-0.572105.315204.34420HepG2IGF2BP1
RPAP3ENSG00000005175.5427.00560558.17580-0.386502.026701.43970HepG2IGF2BP2
RPAP3ENSG00000005175.5382.10630486.90720-0.349702.685401.96300HepG2ILF2
RPAP3ENSG00000005175.5890.09970595.381500.580103.513202.81020HepG2MATR3
RPAP3ENSG00000005175.5895.101201238.68630-0.468702.648601.70320HepG2MTPAP
RPAP3ENSG00000005175.5340.82390485.35560-0.510003.342802.00350HepG2NAA15
RPAP3ENSG00000005175.5524.17860712.80130-0.443402.161901.48610HepG2NOL12
RPAP3ENSG00000005175.5427.75510680.38810-0.669606.865305.98210HepG2PUF60
RPAP3ENSG00000005175.5914.00490750.886800.283502.187401.71200HepG2RBM22
RPAP3ENSG00000005175.5728.31460551.843700.400203.377602.79220HepG2NELFE
RPAP3ENSG00000005175.5339.91450424.50250-0.320601.968601.40990HepG2SAFB2
RPAP3ENSG00000005175.5501.35280652.28240-0.379703.272702.52030HepG2SLBP
RPAP3ENSG00000005175.5804.28640538.862600.577706.981606.31330HepG2SRSF1
RPAP3ENSG00000005175.5498.26140721.19090-0.533505.730304.78690HepG2SRSF7
RPAP3ENSG00000005175.5630.84970484.314900.381302.892402.32000HepG2TAF15
RPAP3ENSG00000005175.5649.297101183.78860-0.8665011.8132010.47350HepG2TARDBP
RPAP3ENSG00000005175.5318.80310463.20110-0.539003.985403.40820HepG2TIAL1
RPAP3ENSG00000005175.5298.46190467.31620-0.646906.588605.78430HepG2TRIM56
RPAP3ENSG00000005175.51192.53750610.891400.964907.016406.02550HepG2U2AF1
RPAP3ENSG00000005175.5204.28900290.76650-0.509202.226401.54560HepG2UCHL5
RPAP3ENSG00000005175.5483.29370630.50830-0.383603.478202.70920HepG2UPF1
RPAP3ENSG00000005175.5925.89390608.731600.604908.653807.68900HepG2UTP3
RPAP3ENSG00000005175.5729.78980503.384100.535702.763801.49850HepG2XRCC5
RPAP3ENSG00000005175.5799.24110563.037500.505302.723901.67730HepG2XRCC6
RPAP3ENSG00000005175.5338.23440484.50250-0.518502.591101.88880HepG2XRN2
RPAP3ENSG00000005175.5578.34590693.43900-0.261802.134301.63610HepG2ZNF622
RPAP3ENSG00000005175.51477.967601139.765400.374802.649801.49770K562AARS
RPAP3ENSG00000005175.51173.331801918.91960-0.7097017.5624016.25540K562AGGF1
RPAP3ENSG00000005175.51756.091002270.27770-0.370503.606502.95390K562AQR
RPAP3ENSG00000005175.52353.192202886.28850-0.294603.807402.50210K562CPEB4
RPAP3ENSG00000005175.5729.68300958.63160-0.393703.739702.48680K562CSTF2
RPAP3ENSG00000005175.5776.283301002.38190-0.368803.090501.98430K562DDX3X
RPAP3ENSG00000005175.53630.386002986.869800.281404.349703.55850K562DDX47
RPAP3ENSG00000005175.51533.909801948.22000-0.344904.455403.57010K562EIF2S2
RPAP3ENSG00000005175.51896.071202418.31210-0.351002.874702.00870K562FIP1L1
RPAP3ENSG00000005175.51454.589901089.075300.417405.529304.71490K562FXR1
RPAP3ENSG00000005175.51912.458901373.543700.477403.295202.51060K562G3BP2
RPAP3ENSG00000005175.51981.016102460.11990-0.312502.093701.39890K562GPKOW
RPAP3ENSG00000005175.51939.041202699.24420-0.477206.320104.66150K562HNRNPL
RPAP3ENSG00000005175.51129.259201550.39310-0.457303.239102.09690K562IGF2BP2
RPAP3ENSG00000005175.51675.737301948.75200-0.217802.502601.73320K562MTPAP
RPAP3ENSG00000005175.51339.347702416.69860-0.851504.779903.38000K562PABPN1
RPAP3ENSG00000005175.51668.060402874.21380-0.785003.569401.83960K562PPP1R8
RPAP3ENSG00000005175.51716.794001025.142700.7438010.136808.69720K562PRPF8
RPAP3ENSG00000005175.5829.506401118.65620-0.431402.395001.56030K562PSIP1
RPAP3ENSG00000005175.51167.643902210.73490-0.920904.128102.57960K562SF1
RPAP3ENSG00000005175.51733.600602136.47700-0.301503.840902.88850K562SF3A3
RPAP3ENSG00000005175.51699.913602696.01130-0.665402.784201.47870K562SFPQ
RPAP3ENSG00000005175.5714.64190967.22520-0.436602.254301.34960K562SRFBP1
RPAP3ENSG00000005175.51109.385801465.93820-0.402103.523802.31420K562SRSF5
RPAP3ENSG00000005175.51957.929101410.051800.473506.485605.22050K562SYNCRIP
RPAP3ENSG00000005175.51166.724701571.23790-0.429403.744702.91640K562TARDBP
RPAP3ENSG00000005175.51144.500401515.60010-0.405204.255603.20890K562TIA1
RPAP3ENSG00000005175.5725.687001076.00380-0.568303.584602.51470K562TIAL1
RPAP3ENSG00000005175.51124.041001486.92790-0.403603.655402.36890K562TRA2A
RPAP3ENSG00000005175.5847.153101142.71350-0.431802.596301.68640K562TRIM56
RPAP3ENSG00000005175.51793.008702295.96720-0.356706.162105.14020K562UPF1
RPAP3ENSG00000005175.51409.558801964.60230-0.479005.670404.39730K562WDR3
RPAP3ENSG00000005175.52325.922002042.850800.187102.154101.40040K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPAP3 is not available on ENCORE database.





16 RBPs can affect the splicing of RPAP3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERPAP3ENSG00000005175.5chr12-480732754807337748063889480641284807348648073557-0.254000.000030.00201excludedK562PRPF8
SERPAP3ENSG00000005175.5chr12-480732754807337748063889480641284807348648073557-0.406000.000000.00006excludedHepG2U2AF1
SERPAP3ENSG00000005175.5chr12-480964704809662948094973480953874809973448099844-0.052000.000090.00472excludedK562AKAP8L
SERPAP3ENSG00000005175.5chr12-4807327548073377480638894806412848073486480735570.132000.000090.03370includedK562PUM1
SERPAP3ENSG00000005175.5chr12-480732754807337748063889480641284807348648073557-0.452000.000000.00001excludedHepG2U2AF2
SERPAP3ENSG00000005175.5chr12-480732754807337748063889480641284807348648073557-0.127000.008890.07396excludedK562AQR
SERPAP3ENSG00000005175.5chr12-480964704809662948095246480953874809973448099782-0.060000.000270.00407excludedK562AQR
SERPAP3ENSG00000005175.5chr12-4809647048096629480949734809538748099734480997820.053000.002960.08791includedK562FXR1
SERPAP3ENSG00000005175.5chr12-480964704809662948094973480953874809973448099844-0.110000.000000.00000excludedK562PUS1
SERPAP3ENSG00000005175.5chr12-480732754807337748063889480641284807348648073557-0.346000.000000.00000excludedK562U2AF1
SERPAP3ENSG00000005175.5chr12-480964704809665448094973480953874809973448099809-0.101000.000000.00022excludedK562HNRNPL
SERPAP3ENSG00000005175.5chr12-480732754807337748063889480641284807348648073557-0.321000.000000.00014excludedHepG2SF3A3
SERPAP3ENSG00000005175.5chr12-480964704809665448094973480953874809973448099809-0.064000.000000.00027excludedK562HNRNPUL1
SERPAP3ENSG00000005175.5chr12-480732754807337748063889480641284807348648073557-0.242000.000470.02563excludedHepG2SF3B4
SERPAP3ENSG00000005175.5chr12-480964704809662948094973480953874809973448099844-0.092000.000000.00000excludedK562UTP18
SERPAP3ENSG00000005175.5chr12-4807327548073377480638894806412848073486480735570.182000.000130.02780includedK562UPF1
SERPAP3ENSG00000005175.5chr12-480732754807337748063889480641284807348648073557-0.353000.000000.00000excludedK562U2AF2
SERPAP3ENSG00000005175.5chr12-480732754807337748063889480641284807348648073557-0.197000.002800.05936excludedK562RBM15
SERPAP3ENSG00000005175.5chr12-480964704809665448094973480953874809973448099809-0.099000.001110.04855excludedK562HNRNPK
A3SSRPAP3ENSG00000005175.5chr12-4807327548073398480732754807337748073486480735570.064000.000860.00606longerK562AQR
A3SSRPAP3ENSG00000005175.5chr12-4806153648061759480615364806163448062698480629350.069000.000000.00000longerK562AQR
A3SSRPAP3ENSG00000005175.5chr12-4807547848075640480754784807560048080562480806900.140000.000000.00000longerK562AQR
A3SSRPAP3ENSG00000005175.5chr12-4808165848081804480816584808178448082907480829780.052000.000010.00006longerK562AQR
A3SSRPAP3ENSG00000005175.5chr12-480638894806412848063889480640044807348648073557-0.052000.017760.08614shorterK562AQR
A3SSRPAP3ENSG00000005175.5chr12-4808165848081804480816584808178448082907480829780.070000.000020.00206longerK562U2AF1
MXERPAP3ENSG00000005175.5chr12-48091379480915024809524648095387480900584809018648099734480998090.069000.000420.004261includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPAP3 is not avaliable on ENCORE database.