RPAP3

General Information

Gene Name : RPAP3
Gene ID : ENSG00000005175.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RPAP3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RPAP3	ENSG00000005175.9	33.30	33.43	33.36	ENCSR000AEF
HepG2	RPAP3	ENSG00000005175.9	12.22	28.73	20.48	ENCSR985KAT
K562	RPAP3	ENSG00000005175.9	53.78	61.96	57.87	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RPAP3 is not avaliable on ENCORE database.

Proteins bound to RNA

RPAP3 RNA is bound by 13 proteins.

CanvasJS.com

eCLIP assay for RPAP3 is not avaliable on ENCORE database.

13 proteins are bound to RPAP3 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	48095308	48095387	-	5'-UTR,CDS,intron-Distal	4.24810	11.93878	K562	UCHL5
chr12	48068984	48069039	-	intron-Distal	5.60522	10.01029	K562	EXOSC5
chr12	48088860	48088882	-	intron-Distal	4.67930	8.75579	K562	PTBP1
chr12	48088833	48088860	-	intron-Distal	4.86238	8.54663	K562	PTBP1
chr12	48070829	48070879	-	intron-Distal	4.38089	8.21325	K562	EXOSC5
chr12	48071424	48071517	-	intron-Distal	5.47475	8.03988	K562	EXOSC5
chr12	48070507	48070559	-	intron-Distal	5.20318	8.03988	K562	EXOSC5
chr12	48082382	48082482	-	intron-Distal	4.75794	7.24774	K562	KHSRP
chr12	48099734	48099788	-	5'-UTR,intron-Distal,intron-Proximal	4.47663	6.82597	K562	DDX3X
chr12	48060668	48060762	-	intron-Distal,intron-Proximal	4.69906	6.80456	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 29 entries

eCLIP assay for RPAP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RPAP3 is not available on ENCORE database.
73 RBPs can affect the levels of RPAP3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RPAP3 is not available on ENCORE database.

73 RBPs can affect the gene expression of RPAP3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RPAP3	ENSG00000005175.5	1173.33180	1918.91960	-0.70970	17.56240	16.25540	K562	AGGF1
RPAP3	ENSG00000005175.5	615.12180	1214.64690	-0.98160	13.55970	12.30680	HepG2	HNRNPLL
RPAP3	ENSG00000005175.5	1333.74110	671.05570	0.99090	11.57380	10.55900	HepG2	AKAP1
RPAP3	ENSG00000005175.5	649.29710	1183.78860	-0.86650	11.81320	10.47350	HepG2	TARDBP
RPAP3	ENSG00000005175.5	377.33310	660.56820	-0.80790	11.59530	9.92290	HepG2	HNRNPA2B1
RPAP3	ENSG00000005175.5	253.60420	530.88120	-1.06580	10.14880	9.05520	HepG2	EIF2S1
RPAP3	ENSG00000005175.5	1716.79400	1025.14270	0.74380	10.13680	8.69720	K562	PRPF8
RPAP3	ENSG00000005175.5	925.89390	608.73160	0.60490	8.65380	7.68900	HepG2	UTP3
RPAP3	ENSG00000005175.5	804.28640	538.86260	0.57770	6.98160	6.31330	HepG2	SRSF1
RPAP3	ENSG00000005175.5	1192.53750	610.89140	0.96490	7.01640	6.02550	HepG2	U2AF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 81 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RPAP3 is not available on ENCORE database.

16 RBPs can affect the splicing of RPAP3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	RPAP3	ENSG00000005175.5	chr12	-	48073275	48073377	48063889	48064128	48073486	48073557	-0.40600	0.00006	excluded	HepG2	U2AF1
SE	RPAP3	ENSG00000005175.5	chr12	-	48073275	48073377	48063889	48064128	48073486	48073557	-0.45200	0.00001	excluded	HepG2	U2AF2
SE	RPAP3	ENSG00000005175.5	chr12	-	48096470	48096629	48094973	48095387	48099734	48099844	-0.11000	0.00000	excluded	K562	PUS1
SE	RPAP3	ENSG00000005175.5	chr12	-	48073275	48073377	48063889	48064128	48073486	48073557	-0.34600	0.00000	excluded	K562	U2AF1
SE	RPAP3	ENSG00000005175.5	chr12	-	48096470	48096654	48094973	48095387	48099734	48099809	-0.10100	0.00022	excluded	K562	HNRNPL
SE	RPAP3	ENSG00000005175.5	chr12	-	48073275	48073377	48063889	48064128	48073486	48073557	-0.32100	0.00014	excluded	HepG2	SF3A3
SE	RPAP3	ENSG00000005175.5	chr12	-	48096470	48096654	48094973	48095387	48099734	48099809	-0.06400	0.00027	excluded	K562	HNRNPUL1
SE	RPAP3	ENSG00000005175.5	chr12	-	48096470	48096629	48094973	48095387	48099734	48099844	-0.09200	0.00000	excluded	K562	UTP18
SE	RPAP3	ENSG00000005175.5	chr12	-	48073275	48073377	48063889	48064128	48073486	48073557	-0.35300	0.00000	excluded	K562	U2AF2
A3SS	RPAP3	ENSG00000005175.5	chr12	-	48061536	48061759	48061536	48061634	48062698	48062935	0.06900	0.00000	longer	K562	AQR

Showing 1 to 10 of 26 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RPAP3

General Information

Functions

Localization

Domains (AlphaFold: RPAP3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RPAP3 is not avaliable on ENCORE database.

13 proteins are bound to RPAP3 RNA:

eCLIP assay for RPAP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RPAP3 is not available on ENCORE database.

73 RBPs can affect the gene expression of RPAP3 :

The Knockdown/knockout RNA-Seq assay for RPAP3 is not available on ENCORE database.

16 RBPs can affect the splicing of RPAP3 :

The Knockdown/knockout RNA-Seq assay for RPAP3 is not avaliable on ENCORE database.