XRCC5

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	XRCC5	ENSG00000079246.15	371.02	337.63	354.32	ENCSR000AEF
HepG2	XRCC5	ENSG00000079246.15	259.77	355.53	307.65	ENCSR985KAT
K562	XRCC5	ENSG00000079246.15	181.72	194.69	188.20	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Controls	Method	Note
knockdown followed by RNA-seq	XRCC5-BGKLV13-K562	ENCSR715XZS	XRCC5	K562	Released	ENCSR815CVQ	shRNA	KD% = 27.6,35.1
knockdown followed by RNA-seq	XRCC5-BGHLV14-HepG2	ENCSR732IYM	XRCC5	HepG2	Released	ENCSR491FOC	shRNA	KD% = 56.1,48.1
knockdown followed by RNA-seq	XRCC5-BGKcLV11-K562	ENCSR276GMG	XRCC5	K562	Released	ENCSR292PXV	CRISPR	KD% = 69.5,70.8

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
XRCC5	ENCAB457QLP	A302-627A	1	Released, ENCODE3	Released, ENCODE3	BGHLV14-67, Released, ENCODE3	BGKcLV11-111, Released, ENCODE4
XRCC5	ENCAB308AOH	201004	DD0729	Released, ENCODE3	Released, ENCODE3	BGHLV14-67, Released, ENCODE3
XRCC5		2180S	1	Released, ENCODE3	Submitted, ENCORE2	BGHLV14-67, Released, ENCODE3	BGKcLV11-107, Submitted, ENCORE2

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
XRCC5	K562	shRNA	ENCSR715XZS	ENCSR815CVQ	XRCC5_BGKLV13_35,XRCC5_BGKLV13_36	NT_BGKLV13_1,NT_BGKLV13_2	27.6,35.1	Released	ENCODE3
XRCC5	HepG2	shRNA	ENCSR732IYM	ENCSR491FOC	XRCC5_BGHLV14-67,XRCC5_BGHLV14-68	NT_BGHLV14-1,NT_BGHLV14-2	56.1,48.1	Released	ENCODE3
XRCC5	K562	CRISPR			BGKcLV06-43,BGKcLV06-44	BGKcLV06-1,BGKcLV06-2	no clear band,	NotSatisfied	ENCODE3
XRCC5	K562	CRISPR			BGKcLV11-107,BGKcLV11-108	BGKcLV11-1,BGKcLV11-2	39.0,49.5	NotSatisfied	ENCODE4
XRCC5	K562	CRISPR			BGKcLV11-109,BGKcLV11-110	BGKcLV11-1,BGKcLV11-2	0.0,0.0	NotSatisfied	ENCODE4
XRCC5	K562	CRISPR	ENCSR276GMG	ENCSR292PXV	XRCC5-BGKcLV11-111,XRCC5-BGKcLV11-112	NT-BGKcLV11-1,NT-BGKcLV11-2	69.5,70.8	Released	ENCODE4
XRCC5	HepG2	CRISPR			BGHcLV07-43,BGHcLV07-44	BGHcLV07-1,BGHcLV07-2	no clear band,	NotSatisfied	ENCODE3

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for XRCC5 is not avaliable on ENCORE database.

Proteins bound to RNA

XRCC5 RNA is bound by 47 proteins.

eCLIP assay for XRCC5 is not avaliable on ENCORE database.

47 proteins are bound to XRCC5 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	217070143	217070168	+	3'-UTR,polyA_site	4.96196	40.92581	K562	PABPC4
chr2	217069909	217070002	+	3'-UTR,CDS,intron-Proximal	3.75142	13.58323	HepG2	LARP4
chr2	216981381	216981427	+	3'-UTR,CDS,intron-Proximal	3.25967	16.19680	HepG2	BCLAF1
chr2	217069926	217069976	+	3'-UTR	4.73048	5.40092	HepG2	CDC40
chr2	216983776	216983839	+	3'-UTR,CDS	3.63543	14.99208	HepG2	BCLAF1
chr2	217070487	217070541	+	3'-UTR	5.92147	13.89399	K562	PUM2
chr2	217070243	217070317	+	3'-UTR	7.49368	27.99001	HepG2	SUB1
chr2	217069909	217069983	+	3'-UTR,CDS,intron-Proximal	3.13775	4.62638	K562	ZC3H11A
chr2	216983879	216983970	+	3'-UTR,CDS,intron-Proximal	3.33466	4.64824	K562	PRPF8
chr2	216983854	216983888	+	3'-UTR,CDS	3.88270	4.65332	HepG2	ZNF800
chr2	217070031	217070087	+	3'-UTR	3.27590	7.86167	K562	YBX3
chr2	217070901	217070986	+	3'-UTR	4.13222	5.68440	K562	IGF2BP1
chr2	216983765	216983829	+	3'-UTR,CDS,intron-Proximal	3.46558	8.94302	HepG2	G3BP1
chr2	217070165	217070234	+	3'-UTR	7.56246	29.52619	HepG2	SUB1
chr2	217070126	217070143	+	3'-UTR	5.05770	21.49152	K562	PABPC4
chr2	217070222	217070294	+	3'-UTR	4.05374	3.74511	K562	IGF2BP1
chr2	216983765	216983820	+	3'-UTR,CDS,intron-Proximal	4.56075	5.05331	K562	GRWD1
chr2	217070224	217070386	+	3'-UTR	3.33385	4.74960	HepG2	UPF1
chr2	217070264	217070311	+	3'-UTR	4.83883	6.78939	K562	NOLC1
chr2	217070580	217070627	+	3'-UTR	3.31063	3.07801	K562	UPF1
chr2	216982453	216982525	+	3'-UTR,CDS,intron-Proximal	5.02886	23.34675	HepG2	AQR
chr2	217070107	217070126	+	3'-UTR	4.19081	7.28182	K562	PABPC4
chr2	217069914	217069995	+	3'-UTR,CDS	3.45625	11.26742	HepG2	DDX55
chr2	216983792	216983829	+	3'-UTR,CDS	3.05392	9.94885	HepG2	BUD13
chr2	216982515	216982552	+	3'-UTR,CDS,intron-Proximal	4.79931	5.01842	HepG2	PRPF8
chr2	217070311	217070362	+	3'-UTR	3.88621	6.46947	K562	NOLC1
chr2	217069911	217069928	+	3'-UTR,CDS	3.53585	5.76403	K562	UCHL5
chr2	217070317	217070368	+	3'-UTR	6.68424	38.33139	HepG2	SUB1
chr2	217069910	217069973	+	3'-UTR,CDS,intron-Proximal	3.65176	10.19645	K562	APOBEC3C
chr2	217070136	217070235	+	3'-UTR,polyA_site	5.83070	15.52411	K562	NOLC1
chr2	217070002	217070090	+	3'-UTR	3.94655	5.54091	HepG2	LARP4
chr2	217070929	217071002	+	3'-UTR	4.04603	13.62242	K562	PUM2
chr2	217069998	217070031	+	3'-UTR	4.58560	6.26929	K562	YBX3
chr2	217070168	217070200	+	3'-UTR	3.59727	11.01454	K562	PABPC4
chr2	216981561	216981635	+	3'-UTR,CDS,intron-Proximal	4.87953	11.87300	HepG2	AQR
chr2	216982460	216982506	+	3'-UTR,CDS,intron-Proximal	3.28003	3.95099	HepG2	PRPF8
chr2	216983820	216983836	+	3'-UTR,CDS	3.12101	5.39456	HepG2	GRWD1
chr2	217069910	217069986	+	3'-UTR,CDS,intron-Proximal	4.53289	50.67664	K562	PABPC4
chr2	217069911	217069980	+	3'-UTR,CDS	3.13728	6.67152	HepG2	GRWD1
chr2	216983763	216983788	+	3'-UTR,CDS,intron-Proximal	4.65995	7.08450	HepG2	AQR
chr2	217069913	217069990	+	3'-UTR,CDS	4.38193	15.70082	HepG2	G3BP1
chr2	216982498	216982516	+	3'-UTR,CDS	4.99409	6.88889	HepG2	G3BP1
chr2	217070022	217070087	+	3'-UTR	3.95714	4.49016	HepG2	FXR2
chr2	216981381	216981443	+	3'-UTR,CDS,intron-Proximal	3.55273	3.90322	HepG2	UCHL5
chr2	216983855	216983888	+	3'-UTR,CDS	3.27113	3.07714	K562	YBX3
chr2	216983856	216983887	+	3'-UTR,CDS	3.29017	9.90630	HepG2	BCLAF1
chr2	216983800	216983825	+	3'-UTR,CDS	3.45073	4.69671	HepG2	PPIG
chr2	216983861	216983880	+	3'-UTR,CDS	4.13025	3.95099	HepG2	PRPF8
chr2	216981381	216981405	+	3'-UTR,CDS,intron-Proximal	4.29464	9.18313	HepG2	GRWD1
chr2	216981417	216981503	+	3'-UTR,CDS	3.08137	8.20042	K562	YBX3
chr2	217070160	217070270	+	3'-UTR	4.24846	20.46341	K562	PUM2
chr2	216983880	216983917	+	3'-UTR,CDS,intron-Proximal	4.74127	5.43815	HepG2	PRPF8
chr2	217069928	217069969	+	3'-UTR	4.09647	8.74711	HepG2	SUB1
chr2	217070325	217070372	+	3'-UTR	3.56702	3.36518	K562	IGF2BP1
chr2	217069910	217069977	+	3'-UTR,CDS,intron-Proximal	4.07960	8.67140	K562	RPS3
chr2	216983765	216983792	+	3'-UTR,CDS,intron-Proximal	3.45668	7.47194	HepG2	GRWD1
chr2	217070864	217070948	+	3'-UTR	3.20022	4.23208	K562	TIA1
chr2	217069928	217069977	+	3'-UTR	3.17758	8.23345	K562	UCHL5
chr2	217069909	217069989	+	3'-UTR,CDS,intron-Proximal	3.20579	6.49187	HepG2	LSM11
chr2	216974116	216974180	+	5'-UTR,CDS	3.46306	4.59975	HepG2	UCHL5
chr2	216977738	216977794	+	5'-UTR,CDS,intron-Proximal	3.12957	4.08737	HepG2	UCHL5
chr2	216974076	216974144	+	5'-UTR	4.23040	9.57046	K562	FMR1
chr2	216974168	216974174	+	5'-UTR,CDS	4.79345	6.94886	HepG2	GRWD1
chr2	216974126	216974178	+	5'-UTR,CDS	4.28522	8.35706	K562	UCHL5
chr2	216975166	216975240	+	5'-UTR,intron-Distal,intron-Proximal	3.35909	8.75397	HepG2	U2AF2
chr2	216974158	216974181	+	5'-UTR,CDS,intron-Proximal	3.42276	7.23254	K562	DDX3X
chr2	216974073	216974158	+	5'-UTR	4.24880	13.37398	K562	DDX3X
chr2	216977743	216977798	+	5'-UTR,CDS	4.65179	16.27776	HepG2	GRWD1
chr2	216974081	216974166	+	5'-UTR,CDS	3.17136	8.72381	K562	FXR2
chr2	217012949	217012974	+	CDS	3.67851	7.24602	HepG2	GRWD1
chr2	216990638	216990721	+	CDS,intron-Proximal	3.91248	12.37809	HepG2	G3BP1
chr2	217055005	217055055	+	CDS	3.36951	8.72097	HepG2	G3BP1
chr2	216977828	216977852	+	CDS	3.32141	13.38795	HepG2	BCLAF1
chr2	217057361	217057371	+	CDS,intron-Proximal	3.30372	4.44431	HepG2	G3BP1
chr2	217055026	217055100	+	CDS,intron-Proximal	3.80867	5.05395	HepG2	PRPF8
chr2	216995604	216995648	+	CDS	3.89905	38.20393	HepG2	BCLAF1
chr2	216986923	216986956	+	CDS	3.93352	10.98590	HepG2	BCLAF1
chr2	216986792	216986885	+	CDS	3.14544	9.24219	K562	FMR1
chr2	217005985	217006031	+	CDS	3.00533	5.21640	HepG2	G3BP1
chr2	217026704	217026765	+	CDS	4.01027	19.07430	HepG2	BCLAF1
chr2	217026723	217026768	+	CDS	3.35138	4.33822	HepG2	FXR2
chr2	217054947	217054962	+	CDS,intron-Proximal	3.25026	4.44431	HepG2	G3BP1
chr2	217006034	217006081	+	CDS,intron-Proximal	4.84741	7.87148	HepG2	PRPF8
chr2	216990667	216990749	+	CDS	3.36847	25.51151	HepG2	BCLAF1
chr2	216992347	216992397	+	CDS	3.29952	8.91678	K562	UCHL5
chr2	217005986	217006033	+	CDS	3.19565	7.00606	HepG2	GRWD1
chr2	216977798	216977826	+	CDS	4.88133	12.39118	HepG2	GRWD1
chr2	217012895	217012962	+	CDS	3.21279	4.37145	K562	GRWD1
chr2	217057439	217057458	+	CDS	4.34181	7.03378	HepG2	GRWD1
chr2	216995653	216995665	+	CDS	4.86687	9.68950	K562	LIN28B
chr2	216986784	216986794	+	CDS,intron-Proximal	4.48248	4.10924	HepG2	ZNF800
chr2	216992385	216992398	+	CDS,intron-Proximal	4.30062	36.19427	HepG2	BCLAF1
chr2	216995690	216995706	+	CDS	3.06546	7.90382	HepG2	BCLAF1
chr2	216995597	216995623	+	CDS,intron-Proximal	3.12610	5.94292	K562	ZNF622
chr2	216986938	216986962	+	CDS	3.06011	4.20172	HepG2	GRWD1
chr2	217005934	217005986	+	CDS	3.01638	6.71695	HepG2	GRWD1
chr2	216995596	216995653	+	CDS,intron-Proximal	3.16119	3.20430	K562	LIN28B
chr2	217005908	217005941	+	CDS,intron-Proximal	3.23919	4.82661	K562	FXR2
chr2	217024859	217024885	+	CDS,intron-Proximal	3.40666	7.95984	K562	FMR1
chr2	216995597	216995602	+	CDS,intron-Proximal	3.10805	7.04888	K562	UCHL5
chr2	216997063	216997112	+	CDS,intron-Proximal	3.05802	8.97576	HepG2	PPIG
chr2	216992280	216992316	+	CDS	3.70742	6.55026	K562	ZNF622
chr2	217069082	217069119	+	CDS	4.35825	10.43661	K562	PABPC4
chr2	217005937	217006002	+	CDS	3.52820	4.62564	HepG2	FXR2
chr2	217001863	217001888	+	CDS	3.18784	9.00189	HepG2	BCLAF1
chr2	217026719	217026771	+	CDS	3.87022	10.12026	HepG2	G3BP1
chr2	216990647	216990679	+	CDS	3.74449	4.57180	HepG2	AQR
chr2	217024813	217024880	+	CDS	4.66881	6.65232	HepG2	UCHL5
chr2	217054945	217054989	+	CDS,intron-Proximal	3.63639	5.36496	K562	ZNF800
chr2	217001845	217001894	+	CDS	4.36546	4.66169	HepG2	UCHL5
chr2	217024815	217024873	+	CDS	3.47579	7.39452	HepG2	G3BP1
chr2	217024818	217024885	+	CDS,intron-Proximal	3.28125	10.30572	K562	FXR2
chr2	216995675	216995706	+	CDS	3.17643	4.80218	K562	UCHL5
chr2	217012860	217012911	+	CDS	3.42536	5.95074	HepG2	GRWD1
chr2	217002873	217002901	+	CDS	3.05825	4.60423	HepG2	G3BP1
chr2	217055053	217055096	+	CDS,intron-Proximal	3.34024	5.10493	HepG2	AQR
chr2	217024816	217024883	+	CDS	3.18462	9.07906	HepG2	RPS3
chr2	217005923	217005985	+	CDS	3.14660	6.93855	HepG2	G3BP1
chr2	217012870	217012921	+	CDS	3.53547	7.45446	HepG2	G3BP1
chr2	216997047	216997100	+	CDS,intron-Proximal	3.10400	8.87585	HepG2	G3BP1
chr2	217001837	217001892	+	CDS	3.77427	10.34553	HepG2	G3BP1
chr2	217006008	217006032	+	CDS	3.83101	17.76645	K562	YBX3
chr2	216997046	216997084	+	CDS,intron-Proximal	5.29018	8.76639	K562	LIN28B
chr2	217059641	217059663	+	CDS,intron-Proximal	3.75291	4.69290	HepG2	RPS3
chr2	216995665	216995701	+	CDS	6.47602	19.34484	K562	LIN28B
chr2	217026760	217026769	+	CDS	3.02240	4.14618	K562	ZNF622
chr2	216995648	216995690	+	CDS	3.47136	15.83723	HepG2	BCLAF1
chr2	217002771	217002814	+	CDS,intron-Proximal	3.59640	4.41130	K562	AQR
chr2	216992266	216992324	+	CDS	3.54785	6.40070	HepG2	G3BP1
chr2	217057371	217057409	+	CDS	3.39258	8.50351	HepG2	BCLAF1
chr2	216986939	216986975	+	CDS	3.03780	5.00112	HepG2	G3BP1
chr2	217024818	217024859	+	CDS	4.46427	10.20791	K562	FMR1
chr2	217026701	217026719	+	CDS,intron-Proximal	3.23717	4.85633	HepG2	G3BP1
chr2	217001820	217001831	+	CDS	4.41071	11.50879	K562	LIN28B
chr2	216995597	216995604	+	CDS,intron-Proximal	3.94316	28.49879	HepG2	BCLAF1
chr2	217057323	217057398	+	CDS,intron-Proximal	3.82091	10.44597	HepG2	AQR
chr2	217026720	217026770	+	CDS	3.66697	7.04499	HepG2	GRWD1
chr2	216995656	216995699	+	CDS	4.14717	12.77113	HepG2	LIN28B
chr2	217001810	217001885	+	CDS,intron-Proximal	3.37639	11.98410	HepG2	GRWD1
chr2	217005948	217006008	+	CDS	3.72934	17.82719	K562	YBX3
chr2	217069044	217069079	+	CDS,intron-Proximal	3.21247	4.94039	K562	YBX3
chr2	217026723	217026776	+	CDS,intron-Proximal	4.24849	3.80886	HepG2	TRA2A
chr2	216997104	216997151	+	CDS,intron-Proximal	4.14126	5.64484	HepG2	PRPF8
chr2	217024800	217024884	+	CDS	3.44212	26.57487	HepG2	BCLAF1
chr2	217005908	217005941	+	CDS,intron-Proximal	4.94220	6.84805	K562	FMR1
chr2	217057369	217057414	+	CDS	3.08443	5.76422	K562	UCHL5
chr2	216977797	216977851	+	CDS	3.35469	3.69997	K562	GRWD1
chr2	216995603	216995636	+	CDS	3.50388	6.42929	HepG2	GRWD1
chr2	217059641	217059704	+	CDS,intron-Proximal	3.00091	4.89904	HepG2	LARP4
chr2	216995602	216995662	+	CDS	3.18217	9.99264	K562	UCHL5
chr2	217057375	217057400	+	CDS	5.31400	6.88889	HepG2	G3BP1
chr2	217002813	217002873	+	CDS	3.72298	7.45446	HepG2	G3BP1
chr2	217002889	217002902	+	CDS	4.85617	6.26177	K562	FMR1
chr2	216992271	216992321	+	CDS	3.75312	14.71474	HepG2	BCLAF1
chr2	216992351	216992398	+	CDS,intron-Proximal	3.24551	4.88178	HepG2	FXR2
chr2	216995681	216995710	+	CDS	3.81850	7.39309	HepG2	G3BP1
chr2	217057437	217057458	+	CDS	3.54964	8.50351	HepG2	BCLAF1
chr2	216992347	216992371	+	CDS	4.90729	17.86190	HepG2	BCLAF1
chr2	216992285	216992311	+	CDS	3.92880	4.41784	HepG2	GRWD1
chr2	217001831	217001852	+	CDS	3.90273	9.95124	K562	LIN28B
chr2	217059641	217059692	+	CDS,intron-Proximal	3.61061	16.61197	HepG2	BCLAF1
chr2	217026702	217026720	+	CDS	3.65760	5.33987	HepG2	GRWD1
chr2	216992383	216992397	+	CDS	4.03031	7.44807	HepG2	GRWD1
chr2	216997098	216997110	+	CDS	5.40651	8.76639	K562	LIN28B
chr2	216992340	216992397	+	CDS	3.93349	11.09639	K562	ZNF622
chr2	216995597	216995603	+	CDS,intron-Proximal	3.76618	5.73981	HepG2	GRWD1
chr2	216992387	216992434	+	CDS,intron-Proximal	4.90019	4.45914	HepG2	PRPF8
chr2	217012813	217012860	+	CDS	3.27507	8.18758	HepG2	GRWD1
chr2	216977846	216977852	+	CDS	4.49913	9.05280	HepG2	GRWD1
chr2	217001808	217001847	+	CDS,intron-Proximal	3.76017	9.42764	HepG2	LIN28B
chr2	216995597	216995681	+	CDS,intron-Proximal	3.88755	15.81571	HepG2	G3BP1
chr2	217059642	217059703	+	CDS	3.89537	7.98704	HepG2	G3BP1
chr2	216977803	216977828	+	CDS	3.54062	11.46441	HepG2	BCLAF1
chr2	216990685	216990717	+	CDS	3.08058	8.06909	HepG2	GRWD1
chr2	217059677	217059708	+	CDS	3.27396	6.98725	K562	YBX3
chr2	216995597	216995647	+	CDS,intron-Proximal	3.74975	3.74028	K562	FXR1
chr2	217001807	217001820	+	CDS,intron-Proximal	4.92308	12.30997	K562	LIN28B
chr2	217024790	217024800	+	CDS,intron-Proximal	3.52688	7.58656	HepG2	BCLAF1
chr2	217001810	217001878	+	CDS,intron-Proximal	3.51916	11.20378	HepG2	RPS3
chr2	217057446	217057458	+	CDS	3.60951	3.24162	HepG2	G3BP1
chr2	216992346	216992400	+	CDS,intron-Proximal	3.31001	3.95463	K562	ZNF800
chr2	216995701	216995711	+	CDS,intron-Proximal	5.11725	7.88172	K562	LIN28B
chr2	216992350	216992398	+	CDS,intron-Proximal	4.12690	15.12964	HepG2	G3BP1
chr2	217059641	217059704	+	CDS,intron-Proximal	3.79374	9.58230	HepG2	GRWD1
chr2	216992371	216992385	+	CDS	5.08625	29.47766	HepG2	BCLAF1
chr2	216986781	216986825	+	CDS,intron-Proximal	3.28799	5.62662	K562	BUD13
chr2	216977823	216977852	+	CDS	4.06892	3.40928	HepG2	UCHL5
chr2	217012866	217012908	+	CDS	4.13035	6.12687	HepG2	RPS3
chr2	216996875	216997010	+	intron-Distal,intron-Proximal	4.30954	5.62258	K562	KHSRP
chr2	217046636	217046677	+	intron-Distal	3.76106	3.04224	HepG2	SUGP2
chr2	216982544	216982634	+	intron-Distal,intron-Proximal	3.88753	11.12430	K562	KHSRP
chr2	217017721	217017777	+	intron-Distal	5.64212	6.85401	K562	QKI
chr2	217040853	217040902	+	intron-Distal	3.01663	3.40206	HepG2	HNRNPC
chr2	216974199	216974300	+	intron-Distal,intron-Proximal	4.62469	19.20078	K562	EFTUD2
chr2	216974300	216974349	+	intron-Distal	5.28983	6.15027	K562	EFTUD2
chr2	217041768	217041871	+	intron-Distal	3.98491	4.61500	HepG2	HNRNPM
chr2	217052723	217052903	+	intron-Distal	3.99976	7.62589	K562	PTBP1
chr2	217017776	217017796	+	intron-Distal	7.12668	35.67161	HepG2	QKI
chr2	217041900	217041949	+	intron-Distal	4.27042	4.31871	HepG2	HNRNPM
chr2	217003125	217003174	+	intron-Distal	4.47738	3.97018	HepG2	HNRNPM
chr2	216978153	216978235	+	intron-Distal	3.54958	5.69331	HepG2	QKI
chr2	216974513	216974593	+	intron-Distal	4.07021	5.85201	K562	PRPF8
chr2	216977600	216977675	+	intron-Distal,intron-Proximal	3.88391	7.66770	HepG2	HNRNPL
chr2	217052820	217052920	+	intron-Distal	5.74581	13.96526	HepG2	PTBP1
chr2	216976981	216977035	+	intron-Distal	4.53891	5.88023	HepG2	HNRNPL
chr2	217028046	217028104	+	intron-Distal	3.25947	5.97391	HepG2	HNRNPC
chr2	217017647	217017706	+	intron-Distal	4.97361	8.13723	HepG2	PTBP1
chr2	216974215	216974356	+	intron-Distal,intron-Proximal	3.59195	12.16982	K562	PRPF8
chr2	216979882	216979944	+	intron-Distal	3.70704	3.47315	HepG2	CSTF2
chr2	217012198	217012280	+	intron-Distal	3.36644	4.13986	HepG2	TAF15
chr2	216982163	216982351	+	intron-Distal	3.64042	9.37731	K562	KHSRP
chr2	217013447	217013539	+	intron-Distal	3.79372	3.02234	K562	KHSRP
chr2	217003042	217003151	+	intron-Distal	4.18223	10.26009	K562	PRPF8
chr2	216974509	216974539	+	intron-Distal	4.89306	4.83371	K562	EFTUD2
chr2	217030719	217030819	+	intron-Distal	3.28533	3.47356	HepG2	HNRNPK
chr2	216974295	216974348	+	intron-Distal	3.65395	6.70242	HepG2	PCBP2
chr2	217045880	217045963	+	intron-Distal	4.88705	4.67693	K562	PTBP1
chr2	217052597	217052696	+	intron-Distal	4.70338	7.56720	K562	PTBP1
chr2	217031207	217031296	+	intron-Distal	4.47016	5.57507	HepG2	HNRNPL
chr2	217039849	217039976	+	intron-Distal	4.99229	7.87489	HepG2	HNRNPK
chr2	216984681	216984759	+	intron-Distal	3.45255	6.09178	HepG2	QKI
chr2	217017646	217017711	+	intron-Distal	4.75432	3.91475	K562	PTBP1
chr2	217041669	217041704	+	intron-Distal	3.68505	3.04224	HepG2	SUGP2
chr2	216984532	216984609	+	intron-Distal	5.23641	6.23225	K562	QKI
chr2	216974282	216974326	+	intron-Distal	4.13772	3.58858	HepG2	NCBP2
chr2	217045892	217045964	+	intron-Distal	5.00048	7.87294	HepG2	MATR3
chr2	217017796	217017828	+	intron-Distal	7.19428	37.30088	HepG2	QKI
chr2	216974488	216974542	+	intron-Distal	5.04784	27.17497	HepG2	PCBP2
chr2	216984562	216984605	+	intron-Distal	4.43627	14.84691	HepG2	QKI
chr2	217027594	217027723	+	intron-Distal	5.33380	8.45817	HepG2	QKI
chr2	217040378	217040466	+	intron-Distal	3.50773	4.28254	HepG2	MATR3
chr2	216974205	216974328	+	intron-Distal,intron-Proximal	3.14487	9.06604	HepG2	CDC40
chr2	216974281	216974351	+	intron-Distal	5.21877	40.54322	HepG2	EFTUD2
chr2	217046112	217046210	+	intron-Distal	3.97699	3.65412	HepG2	HNRNPK
chr2	217017828	217017905	+	intron-Distal	3.80200	10.83381	HepG2	QKI
chr2	216974388	216974488	+	intron-Distal	5.15660	27.72646	HepG2	PCBP2
chr2	217052739	217052820	+	intron-Distal	4.58651	10.04838	HepG2	PTBP1
chr2	217052572	217052695	+	intron-Distal	6.21428	18.47135	HepG2	PTBP1
chr2	217017777	217017829	+	intron-Distal	4.30841	8.39533	K562	QKI
chr2	217041830	217041897	+	intron-Distal	3.59372	4.60009	HepG2	SUGP2
chr2	217017923	217017973	+	intron-Distal	3.47162	7.57903	HepG2	QKI
chr2	217017646	217017699	+	intron-Distal	4.91792	11.65855	HepG2	QKI
chr2	216976877	216976982	+	intron-Distal	3.25029	5.79202	HepG2	U2AF2
chr2	217007705	217007806	+	intron-Distal	3.26188	6.72967	HepG2	HNRNPL
chr2	217045881	217045985	+	intron-Distal	4.60268	11.56570	HepG2	PTBP1
chr2	216974202	216974289	+	intron-Distal,intron-Proximal	4.06894	13.54484	HepG2	PRPF8
chr2	216974509	216974544	+	intron-Distal	3.84399	9.19242	HepG2	EFTUD2
chr2	217052685	217052895	+	intron-Distal	3.32386	4.37446	HepG2	MATR3
chr2	217040421	217040493	+	intron-Distal	3.82878	6.23177	HepG2	SUGP2
chr2	217017710	217017776	+	intron-Distal	5.48271	22.88721	HepG2	QKI
chr2	217001988	217002045	+	intron-Proximal	4.67691	4.96013	K562	PRPF8
chr2	217001967	217002026	+	intron-Proximal	4.25389	4.52312	K562	AQR
chr2	217055060	217055115	+	intron-Proximal	5.15307	7.23718	K562	AQR
chr2	216977857	216977931	+	intron-Proximal	3.11098	3.93901	K562	KHSRP
chr2	216974204	216974273	+	intron-Proximal	4.10362	3.53723	HepG2	PTBP1
chr2	216992404	216992436	+	intron-Proximal	4.07714	5.64238	K562	PRPF8
chr2	216987022	216987067	+	intron-Proximal	4.47736	4.22101	K562	PRPF8
chr2	216974204	216974277	+	intron-Proximal	5.52148	47.56023	HepG2	EFTUD2
chr2	217013033	217013092	+	intron-Proximal	3.87868	4.86737	HepG2	RBM22
chr2	216974204	216974255	+	intron-Proximal	4.06611	24.83253	HepG2	RBM22
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for XRCC5 is not avaliable on ENCORE database.

Diffrential Expression

1,538 differentially expressed genes after Knockdown/Knockout XRCC5 protein.

119 RBPs can affect the levels of XRCC5.

1,538 differentially expressed genes after Knockdown/Knockout XRCC5 protein :

Only display 100 entries as example. Please click "View All" button to see all 1,538 entries.

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TFPI	ENSG00000003436.10	12506.48230	9035.90050	0.46880	2.94350	1.64310	HepG2	XRCC5
PLXND1	ENSG00000004399.8	2149.05980	1495.29070	0.52320	3.20290	1.83680	HepG2	XRCC5
CDC27	ENSG00000004897.7	3226.97560	2369.44290	0.44550	2.70500	1.46010	HepG2	XRCC5
RPAP3	ENSG00000005175.5	729.78980	503.38410	0.53570	2.76380	1.49850	HepG2	XRCC5
GCFC2	ENSG00000005436.9	978.13770	603.17460	0.69740	4.67350	3.02210	HepG2	XRCC5
IBTK	ENSG00000005700.10	3170.29060	2208.00960	0.52180	2.95700	1.65160	HepG2	XRCC5
ZFX	ENSG00000005889.11	622.67730	908.38550	-0.54480	3.15770	1.80330	HepG2	XRCC5
ASB4	ENSG00000005981.8	255.16900	73.64720	1.79270	11.85820	9.27480	HepG2	XRCC5
TMEM98	ENSG00000006042.7	923.72220	1353.28950	-0.55090	3.38590	1.97270	HepG2	XRCC5
JHDM1D	ENSG00000006459.6	3180.07510	1912.19320	0.73370	5.44830	3.66540	HepG2	XRCC5
ALDH3B1	ENSG00000006534.11	35.88020	116.04510	-1.69340	5.95200	4.11420	HepG2	XRCC5
PHTF2	ENSG00000006576.12	621.25980	319.18730	0.96070	6.89680	4.93490	HepG2	XRCC5
DBF4	ENSG00000006634.3	648.54010	399.32970	0.69950	4.16960	2.61420	HepG2	XRCC5
IFRD1	ENSG00000006652.9	828.21050	483.54110	0.77630	5.37120	3.60290	HepG2	XRCC5
MGST1	ENSG00000008394.8	1289.11220	1875.56040	-0.54090	3.73880	2.25350	HepG2	XRCC5
CRY1	ENSG00000008405.7	523.25360	287.91250	0.86180	5.31590	3.55530	HepG2	XRCC5
SEC62	ENSG00000008952.12	3584.26810	2565.38210	0.48240	3.12290	1.77650	HepG2	XRCC5
REV3L	ENSG00000009413.11	1966.19710	1358.53860	0.53330	3.43630	2.01080	HepG2	XRCC5
MLXIPL	ENSG00000009950.11	935.73750	2090.02000	-1.15930	2.88660	1.59840	HepG2	XRCC5
NCAPD2	ENSG00000010292.8	2004.83140	3467.57990	-0.79040	7.58010	5.55180	HepG2	XRCC5
HIVEP2	ENSG00000010818.4	1647.20520	1196.05210	0.46160	2.54200	1.33980	HepG2	XRCC5
TSPAN9	ENSG00000011105.7	564.56200	832.02690	-0.55950	2.97070	1.66170	HepG2	XRCC5
MAP4K3	ENSG00000011566.10	3675.40380	2235.38220	0.71730	6.18490	4.30770	HepG2	XRCC5
NR1H4	ENSG00000012504.9	462.24410	866.41210	-0.90640	5.34400	3.58130	HepG2	XRCC5
ELOVL5	ENSG00000012660.9	1278.18360	2487.94910	-0.96090	10.02310	7.73710	HepG2	XRCC5
CLK1	ENSG00000013441.11	1899.18770	1245.78490	0.60820	4.37080	2.78230	HepG2	XRCC5
UFL1	ENSG00000014123.9	1412.08770	1016.15830	0.47460	2.65570	1.42600	HepG2	XRCC5
WWTR1	ENSG00000018408.10	3914.20630	2501.57080	0.64580	5.16250	3.41790	HepG2	XRCC5
AGPS	ENSG00000018510.8	4035.14150	2943.47200	0.45500	2.82930	1.55120	HepG2	XRCC5
CYP24A1	ENSG00000019186.5	658.49330	327.98370	1.00540	7.76770	5.71150	HepG2	XRCC5
SPAST	ENSG00000021574.7	1210.99760	829.66970	0.54550	3.27980	1.89510	HepG2	XRCC5
CPS1	ENSG00000021826.10	981.19980	1391.42550	-0.50390	3.14700	1.79540	HepG2	XRCC5
C8B	ENSG00000021852.8	159.93370	354.79990	-1.14950	7.11230	5.12910	HepG2	XRCC5
RB1CC1	ENSG00000023287.8	2912.33400	1989.60810	0.54960	3.89130	2.38770	HepG2	XRCC5
BIRC3	ENSG00000023445.9	166.83970	81.90080	1.02640	3.90460	2.39780	HepG2	XRCC5
TOMM34	ENSG00000025772.7	573.20830	889.20860	-0.63350	3.99200	2.46930	HepG2	XRCC5
IFNGR1	ENSG00000027697.8	2696.20990	1811.45910	0.57370	4.09810	2.55370	HepG2	XRCC5
SNX1	ENSG00000028528.10	1767.59450	2509.68310	-0.50570	3.29270	1.90160	HepG2	XRCC5
ARNTL2	ENSG00000029153.10	446.21020	292.02310	0.61150	2.77390	1.50510	HepG2	XRCC5
IKZF2	ENSG00000030419.12	67.88390	29.51640	1.20150	2.59430	1.37780	HepG2	XRCC5
FUT8	ENSG00000033170.12	691.82280	440.21760	0.65210	3.65050	2.17820	HepG2	XRCC5
SLC4A7	ENSG00000033867.12	1986.09260	1118.48910	0.82830	7.47500	5.45790	HepG2	XRCC5
VCL	ENSG00000035403.12	1484.25180	961.94390	0.62560	4.37490	2.78490	HepG2	XRCC5
MFAP3	ENSG00000037749.7	546.55480	792.94350	-0.53690	2.88250	1.59560	HepG2	XRCC5
CDH1	ENSG00000039068.14	442.23800	979.70600	-1.14750	11.10760	8.64910	HepG2	XRCC5
ZFYVE16	ENSG00000039319.12	1573.63340	1115.17890	0.49670	2.98690	1.67300	HepG2	XRCC5
RAI14	ENSG00000039560.9	1369.74780	812.94210	0.75260	5.86140	4.03770	HepG2	XRCC5
PHLPP2	ENSG00000040199.14	1004.14950	517.18430	0.95710	8.21340	6.10220	HepG2	XRCC5
AIFM2	ENSG00000042286.10	366.78870	626.14290	-0.77150	3.47500	2.04140	HepG2	XRCC5
PHKA2	ENSG00000044446.7	2630.97350	3508.84240	-0.41540	2.52040	1.32290	HepG2	XRCC5
YTHDC2	ENSG00000047188.11	1333.05620	927.87370	0.52260	3.12740	1.77910	HepG2	XRCC5
C12orf4	ENSG00000047621.7	303.29850	183.00910	0.72870	3.28390	1.89770	HepG2	XRCC5
USP28	ENSG00000048028.7	581.32250	828.99930	-0.51200	2.74610	1.48730	HepG2	XRCC5
RSF1	ENSG00000048649.9	1898.78800	1361.83010	0.47940	2.83170	1.55290	HepG2	XRCC5
KITLG	ENSG00000049130.9	456.36180	172.90430	1.40010	11.26520	8.77870	HepG2	XRCC5
ADAMTS6	ENSG00000049192.10	598.24190	321.62290	0.89530	6.07430	4.21520	HepG2	XRCC5
HEXB	ENSG00000049860.9	2048.58390	1368.71990	0.58170	4.04500	2.51280	HepG2	XRCC5
NFE2L3	ENSG00000050344.8	618.45340	422.49470	0.54960	2.73830	1.48250	HepG2	XRCC5
PIK3CB	ENSG00000051382.4	1630.35980	1114.31120	0.54890	3.42480	2.00270	HepG2	XRCC5
PRSS8	ENSG00000052344.11	71.77810	151.75300	-1.08010	3.77980	2.29150	HepG2	XRCC5
MSMO1	ENSG00000052802.8	1391.23860	4128.19620	-1.56910	7.24630	5.25770	HepG2	XRCC5
AKR7A2	ENSG00000053371.8	279.99040	483.15400	-0.78710	2.82510	1.54770	HepG2	XRCC5
CYFIP2	ENSG00000055163.14	933.08420	1379.01520	-0.56360	3.67970	2.20410	HepG2	XRCC5
GINM1	ENSG00000055211.8	960.43850	663.20270	0.53410	3.01950	1.69660	HepG2	XRCC5
PUM2	ENSG00000055917.11	4724.73930	3485.12290	0.43890	2.67100	1.43770	HepG2	XRCC5
ITIH1	ENSG00000055957.6	129.18070	362.36020	-1.48800	10.53420	8.18820	HepG2	XRCC5
RC3H2	ENSG00000056586.11	1804.90600	1317.37930	0.45420	2.61950	1.39750	HepG2	XRCC5
IL17RB	ENSG00000056736.5	1815.47620	2584.23040	-0.50940	3.36110	1.95430	HepG2	XRCC5
GYG2	ENSG00000056998.14	316.68200	596.68190	-0.91390	6.25440	4.36560	HepG2	XRCC5
F7	ENSG00000057593.9	330.48700	611.36350	-0.88740	6.03830	4.18460	HepG2	XRCC5
USP13	ENSG00000058056.4	2263.89360	1511.41380	0.58280	3.90450	2.39780	HepG2	XRCC5
SEC61A1	ENSG00000058262.5	3896.10040	5225.53230	-0.42350	2.67580	1.44040	HepG2	XRCC5
PPP1R12A	ENSG00000058272.11	1676.06880	1186.80320	0.49790	3.01730	1.69550	HepG2	XRCC5
ALDH18A1	ENSG00000059573.4	3901.25620	6279.43200	-0.68670	6.19810	4.31800	HepG2	XRCC5
MXD1	ENSG00000059728.6	451.36200	252.19780	0.83960	4.87960	3.19010	HepG2	XRCC5
SLC2A3	ENSG00000059804.11	8858.01530	12480.66960	-0.49460	2.90930	1.61510	HepG2	XRCC5
CREB3L3	ENSG00000060566.9	130.52020	261.77850	-1.00410	3.70730	2.22720	HepG2	XRCC5
QSER1	ENSG00000060749.10	2283.11300	1663.91630	0.45630	2.67910	1.44300	HepG2	XRCC5
BCAT1	ENSG00000060982.10	1761.99950	977.82930	0.84950	7.55260	5.52950	HepG2	XRCC5
DGAT2	ENSG00000062282.10	386.80170	572.32930	-0.56530	2.73280	1.47910	HepG2	XRCC5
MRPS24	ENSG00000062582.9	209.08390	339.51760	-0.69940	3.11820	1.77330	HepG2	XRCC5
WAPAL	ENSG00000062650.13	2536.34030	1864.47900	0.44390	2.58970	1.37490	HepG2	XRCC5
VMP1	ENSG00000062716.6	5802.17130	3456.91920	0.74700	7.02620	5.05730	HepG2	XRCC5
CASP8	ENSG00000064012.17	1231.70170	799.65230	0.62310	4.07970	2.53970	HepG2	XRCC5
SLC12A2	ENSG00000064651.9	575.61390	340.06970	0.75920	4.61080	2.96750	HepG2	XRCC5
UHRF1BP1	ENSG00000065060.12	2213.11370	1609.48150	0.45940	2.71240	1.46470	HepG2	XRCC5
ERBB3	ENSG00000065361.10	5981.26920	9444.23530	-0.65900	5.79070	3.97450	HepG2	XRCC5
MYLK	ENSG00000065534.14	515.71690	765.01870	-0.56890	3.13260	1.78390	HepG2	XRCC5
SLK	ENSG00000065613.9	1764.97560	1274.67520	0.46940	2.77070	1.50330	HepG2	XRCC5
MTHFD2	ENSG00000065911.7	3178.99520	1531.31530	1.05370	12.12140	9.50810	HepG2	XRCC5
PPP2R5A	ENSG00000066027.7	1461.65250	675.95660	1.11250	11.66610	9.09690	HepG2	XRCC5
ASPM	ENSG00000066279.12	1817.29750	1314.07850	0.46760	2.71930	1.46970	HepG2	XRCC5
ELOVL1	ENSG00000066322.8	374.49220	550.84620	-0.55670	2.74170	1.48530	HepG2	XRCC5
ZBTB11	ENSG00000066422.4	747.41100	491.22390	0.60540	3.37880	1.96710	HepG2	XRCC5
FGFR2	ENSG00000066468.16	20.94490	97.12530	-2.21320	6.10470	4.24140	HepG2	XRCC5
LRRC40	ENSG00000066557.5	866.90400	596.24550	0.53990	2.95550	1.65070	HepG2	XRCC5
THUMPD1	ENSG00000066654.8	2041.01160	1432.91410	0.51020	3.24360	1.86800	HepG2	XRCC5
ARFGEF1	ENSG00000066777.4	1786.70730	1271.04940	0.49120	2.96540	1.65740	HepG2	XRCC5
ACSM2B	ENSG00000066813.10	123.47610	403.54930	-1.70850	11.12700	8.65290	HepG2	XRCC5
MYO9A	ENSG00000066933.11	982.08520	605.25550	0.69820	4.61050	2.96750	HepG2	XRCC5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

119 RBPs can affect the gene expression of XRCC5 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
XRCC5	ENSG00000079246.11	9628.84650	7936.96280	0.27870	6.38110	5.53600	HepG2	ACO1
XRCC5	ENSG00000079246.11	15225.68030	8177.60750	0.89670	13.79860	12.70450	HepG2	AKAP1
XRCC5	ENSG00000079246.11	7181.53500	9612.26330	-0.42060	3.04290	2.05700	HepG2	BCCIP
XRCC5	ENSG00000079246.11	4835.44680	8352.94170	-0.78860	10.83840	9.21040	HepG2	BCLAF1
XRCC5	ENSG00000079246.11	7156.04520	9616.58140	-0.42640	5.38240	4.58190	HepG2	BOP1
XRCC5	ENSG00000079246.11	10989.76340	15106.95020	-0.45910	3.57570	2.45250	HepG2	CCAR1
XRCC5	ENSG00000079246.11	7703.91170	6428.41460	0.26100	1.96550	1.30830	HepG2	CIRBP
XRCC5	ENSG00000079246.11	6795.16960	4805.43870	0.49970	3.04660	2.24050	HepG2	CNOT7
XRCC5	ENSG00000079246.11	7425.60210	8828.59880	-0.24970	1.90890	1.32670	HepG2	CPSF6
XRCC5	ENSG00000079246.11	8902.62850	13060.22910	-0.55290	28.22320	26.33320	HepG2	DAZAP1
XRCC5	ENSG00000079246.11	5657.66200	7959.89180	-0.49250	4.69410	3.83640	HepG2	DDX21
XRCC5	ENSG00000079246.11	6749.69590	8552.54780	-0.34150	3.27720	2.18570	HepG2	DDX5
XRCC5	ENSG00000079246.11	5625.46600	8135.81250	-0.53230	6.12220	4.70230	HepG2	DHX30
XRCC5	ENSG00000079246.11	6413.31140	7593.62000	-0.24370	4.13580	3.34080	HepG2	DKC1
XRCC5	ENSG00000079246.11	5242.92330	8435.32800	-0.68610	22.48490	20.69270	HepG2	DNAJC21
XRCC5	ENSG00000079246.11	5168.06650	8360.60560	-0.69400	39.52960	37.32070	HepG2	DNAJC2
XRCC5	ENSG00000079246.11	5553.69120	7326.59330	-0.39970	2.83680	1.71600	HepG2	AGO1
XRCC5	ENSG00000079246.11	4866.08360	6468.84480	-0.41070	3.91250	3.21450	HepG2	EIF2S1
XRCC5	ENSG00000079246.11	5509.61110	7148.75400	-0.37570	2.83290	2.18670	HepG2	EIF4A3
XRCC5	ENSG00000079246.11	7296.05420	12342.76500	-0.75850	14.62020	12.85820	HepG2	EIF4G2
XRCC5	ENSG00000079246.11	11285.22520	14344.82180	-0.34610	8.21490	7.27340	HepG2	ETF1
XRCC5	ENSG00000079246.11	5432.56930	8843.62070	-0.70300	3.18360	2.09150	HepG2	FTO
XRCC5	ENSG00000079246.11	4911.63750	4017.96290	0.28960	2.88080	2.07940	HepG2	FUBP3
XRCC5	ENSG00000079246.11	9512.41770	7213.03510	0.39910	3.78020	2.98110	HepG2	FXR1
XRCC5	ENSG00000079246.11	8514.85480	6691.02040	0.34770	2.73090	2.06910	HepG2	G3BP1
XRCC5	ENSG00000079246.11	6703.50550	8405.66320	-0.32640	2.36040	1.42320	HepG2	GNB2L1
XRCC5	ENSG00000079246.11	5322.61140	10008.05040	-0.91100	15.44260	14.04850	HepG2	GPKOW
XRCC5	ENSG00000079246.11	6285.56060	7577.75590	-0.26970	4.75080	3.50410	HepG2	HDGF
XRCC5	ENSG00000079246.11	4767.19280	8516.13810	-0.83710	20.52020	19.03920	HepG2	HNRNPA1
XRCC5	ENSG00000079246.11	6806.31490	9472.55090	-0.47690	7.03390	5.96980	HepG2	HNRNPC
XRCC5	ENSG00000079246.11	7040.33450	11474.37300	-0.70470	29.57100	27.62000	HepG2	HNRNPF
XRCC5	ENSG00000079246.11	10352.77350	6775.56150	0.61150	9.79660	8.55100	HepG2	HNRNPK
XRCC5	ENSG00000079246.11	9354.15280	11896.85550	-0.34690	12.38140	11.05020	HepG2	HNRNPL
XRCC5	ENSG00000079246.11	3675.03220	9550.85360	-1.37790	39.83340	37.88190	HepG2	HNRNPLL
XRCC5	ENSG00000079246.11	7229.09630	9409.92990	-0.38040	9.74680	8.66370	HepG2	HNRNPU
XRCC5	ENSG00000079246.11	6797.69930	11299.00660	-0.73310	19.38380	17.66070	HepG2	IGF2BP1
XRCC5	ENSG00000079246.11	12152.99940	6382.84390	0.92890	4.48630	3.24320	HepG2	IGF2BP3
XRCC5	ENSG00000079246.11	7659.25410	9611.94530	-0.32760	10.90570	9.55550	HepG2	ILF2
XRCC5	ENSG00000079246.11	5871.55540	7255.61360	-0.30540	7.88040	6.22660	HepG2	KIF1C
XRCC5	ENSG00000079246.11	11668.21920	15945.71580	-0.45060	3.54620	2.60530	HepG2	LARP4
XRCC5	ENSG00000079246.11	11579.84700	7255.89960	0.67430	8.45470	7.40260	HepG2	MATR3
XRCC5	ENSG00000079246.11	5872.43830	9740.31080	-0.73000	6.45690	4.94070	HepG2	MTPAP
XRCC5	ENSG00000079246.11	10646.08850	12950.49870	-0.28270	3.95610	3.04360	HepG2	NOL12
XRCC5	ENSG00000079246.11	5905.65830	8468.55250	-0.52000	7.35050	6.16840	HepG2	NSUN2
XRCC5	ENSG00000079246.11	4912.10370	6613.88910	-0.42920	4.01580	3.15660	HepG2	PABPC4
XRCC5	ENSG00000079246.11	7918.42760	6636.71970	0.25460	4.59520	3.84660	HepG2	PCBP1
XRCC5	ENSG00000079246.11	5612.00570	8392.91920	-0.58070	15.71760	14.04370	HepG2	PPIL4
XRCC5	ENSG00000079246.11	6240.23490	7937.71430	-0.34710	7.43450	6.24090	HepG2	PRPF4
XRCC5	ENSG00000079246.11	5778.17240	7292.11720	-0.33570	2.42720	1.66910	HepG2	PRPF8
XRCC5	ENSG00000079246.11	9734.17480	6753.17920	0.52740	17.60510	16.45320	HepG2	PTBP1
XRCC5	ENSG00000079246.11	8515.79140	12362.39640	-0.53770	9.39820	8.38870	HepG2	PUF60
XRCC5	ENSG00000079246.11	10397.18400	13113.64910	-0.33490	5.04000	4.14900	HepG2	PUM2
XRCC5	ENSG00000079246.11	6941.41230	8084.36660	-0.21990	4.06430	3.34330	HepG2	PUS1
XRCC5	ENSG00000079246.11	8741.67410	7313.71340	0.25720	3.39480	2.71220	HepG2	QKI
XRCC5	ENSG00000079246.11	14520.44890	8796.90660	0.72290	5.19530	4.24490	HepG2	RAVER1
XRCC5	ENSG00000079246.11	8242.97500	9863.92070	-0.25900	3.25810	2.33580	HepG2	RBM15
XRCC5	ENSG00000079246.11	14519.14570	11989.69980	0.27610	4.77910	4.14480	HepG2	RBM22
XRCC5	ENSG00000079246.11	11387.20730	7515.58300	0.59940	23.08510	21.82280	HepG2	NELFE
XRCC5	ENSG00000079246.11	9241.02360	6999.84770	0.40060	10.90780	9.80760	HepG2	RECQL
XRCC5	ENSG00000079246.11	8062.63380	12360.34000	-0.61640	11.02670	9.81870	HepG2	RPLP0
XRCC5	ENSG00000079246.11	5926.89150	8639.60190	-0.54370	3.75230	2.65370	HepG2	RPS10
XRCC5	ENSG00000079246.11	4995.26740	7213.59060	-0.53020	4.99060	3.96860	HepG2	RRP9
XRCC5	ENSG00000079246.11	6220.85920	8380.00480	-0.42980	14.62570	13.32020	HepG2	SAFB2
XRCC5	ENSG00000079246.11	12458.63910	8895.87080	0.48580	3.74700	2.95730	HepG2	SF3A3
XRCC5	ENSG00000079246.11	7211.23890	9453.54240	-0.39060	4.45420	3.57700	HepG2	SF3B1
XRCC5	ENSG00000079246.11	8941.20850	7030.80800	0.34670	8.23220	7.29610	HepG2	SF3B4
XRCC5	ENSG00000079246.11	8461.48250	11853.63930	-0.48630	21.94730	20.34480	HepG2	SLBP
XRCC5	ENSG00000079246.11	10587.67740	9772.57940	0.11550	1.97500	1.41670	HepG2	SMN1
XRCC5	ENSG00000079246.11	14892.68180	13542.07180	0.13710	2.18320	1.72160	HepG2	SRFBP1
XRCC5	ENSG00000079246.11	14035.02410	7338.69170	0.93530	64.32620	62.73200	HepG2	SRSF1
XRCC5	ENSG00000079246.11	10199.75550	12206.08220	-0.25910	5.05930	4.25280	HepG2	SRSF5
XRCC5	ENSG00000079246.11	6562.85990	11273.10670	-0.78050	36.85650	34.91090	HepG2	SRSF7
XRCC5	ENSG00000079246.11	9117.59640	11757.98130	-0.36690	9.65610	8.81150	HepG2	SSB
XRCC5	ENSG00000079246.11	4956.23530	6627.75170	-0.41930	3.01250	1.72640	HepG2	STAU1
XRCC5	ENSG00000079246.11	6892.31950	9408.37030	-0.44900	3.72970	2.96100	HepG2	SUPV3L1
XRCC5	ENSG00000079246.11	7644.14970	6596.44180	0.21260	2.61780	2.07110	HepG2	TAF15
XRCC5	ENSG00000079246.11	5477.76940	9308.73890	-0.76500	14.94320	13.47830	HepG2	TARDBP
XRCC5	ENSG00000079246.11	4373.90770	9143.79850	-1.06390	41.07330	39.56760	HepG2	TIAL1
XRCC5	ENSG00000079246.11	5380.78370	9225.22250	-0.77780	37.05590	35.29190	HepG2	TRIM56
XRCC5	ENSG00000079246.11	3502.36410	5558.17150	-0.66630	8.72580	7.37490	HepG2	UCHL5
XRCC5	ENSG00000079246.11	6835.19310	7889.28220	-0.20690	3.46890	2.70100	HepG2	UPF1
XRCC5	ENSG00000079246.11	6090.42320	8616.56560	-0.50060	3.20330	2.12190	HepG2	UPF2
XRCC5	ENSG00000079246.11	8727.11190	7616.78450	0.19620	3.13520	2.50440	HepG2	UTP3
XRCC5	ENSG00000079246.11	3122.20960	8648.88780	-1.46990	23.52910	20.34360	HepG2	XRCC5
XRCC5	ENSG00000079246.11	6766.56800	9261.49300	-0.45280	4.30860	3.40960	HepG2	XRN2
XRCC5	ENSG00000079246.11	8786.71030	7833.51090	0.16560	2.86610	2.18450	HepG2	ZC3H8
XRCC5	ENSG00000079246.11	7861.73900	8676.69330	-0.14230	2.45760	1.93350	HepG2	ZNF622
XRCC5	ENSG00000079246.11	7882.06700	6232.23360	0.33870	3.89230	2.46500	K562	AARS
XRCC5	ENSG00000079246.11	11925.73940	14676.45840	-0.29940	2.82650	1.58690	K562	ABCF1
XRCC5	ENSG00000079246.11	8280.70610	7212.47920	0.19920	3.06960	2.47630	K562	AGGF1
XRCC5	ENSG00000079246.11	7796.05430	12201.29210	-0.64620	12.04170	10.94260	K562	AQR
XRCC5	ENSG00000079246.11	6261.52860	7587.25110	-0.27710	4.52340	2.78060	K562	BCCIP
XRCC5	ENSG00000079246.11	5841.83320	7332.25550	-0.32780	7.69860	6.07020	K562	BCLAF1
XRCC5	ENSG00000079246.11	5173.65960	6913.68940	-0.41830	4.55250	3.42220	K562	BOP1
XRCC5	ENSG00000079246.11	9793.32580	11200.95270	-0.19380	2.39330	1.37170	K562	CPEB4
XRCC5	ENSG00000079246.11	5521.67330	7351.28890	-0.41290	6.27350	5.09520	K562	CPSF6
XRCC5	ENSG00000079246.11	4441.24230	5562.60910	-0.32480	5.29570	3.76660	K562	CSTF2
XRCC5	ENSG00000079246.11	6183.17500	7999.52480	-0.37160	7.75210	5.70490	K562	DDX21
XRCC5	ENSG00000079246.11	5501.32800	6428.67420	-0.22470	3.31820	1.85410	K562	DDX27
XRCC5	ENSG00000079246.11	4102.80750	5288.79280	-0.36630	4.53210	3.15070	K562	DDX3X
XRCC5	ENSG00000079246.11	4596.76570	5362.12690	-0.22220	2.54320	1.30460	K562	DDX6
XRCC5	ENSG00000079246.11	10337.25460	8076.06650	0.35600	6.76390	5.29830	K562	DKC1
XRCC5	ENSG00000079246.11	4871.50090	5809.24220	-0.25400	3.89030	2.43260	K562	EIF2S1
XRCC5	ENSG00000079246.11	7350.74160	10082.65760	-0.45590	10.93300	9.64890	K562	EIF2S2
XRCC5	ENSG00000079246.11	11844.33010	15310.10730	-0.37030	7.56590	6.02660	K562	EIF4G2
XRCC5	ENSG00000079246.11	5242.28460	6392.38110	-0.28620	3.04550	1.71530	K562	EXOSC5
XRCC5	ENSG00000079246.11	8846.23440	10549.98520	-0.25410	2.21580	1.45600	K562	FIP1L1
XRCC5	ENSG00000079246.11	5482.94330	7479.65850	-0.44800	5.38260	4.18370	K562	FMR1
XRCC5	ENSG00000079246.11	4217.51900	6339.64030	-0.58800	7.39060	5.82000	K562	FTO
XRCC5	ENSG00000079246.11	7501.99950	5746.25160	0.38460	8.00620	7.04520	K562	FXR1
XRCC5	ENSG00000079246.11	7782.79970	6182.51960	0.33200	2.00610	1.41650	K562	G3BP2
XRCC5	ENSG00000079246.11	5048.64270	7018.71460	-0.47530	6.80140	5.55870	K562	GPKOW
XRCC5	ENSG00000079246.11	7796.56680	13436.57720	-0.78530	17.18710	15.26100	K562	GRSF1
XRCC5	ENSG00000079246.11	7068.20710	8694.68360	-0.29880	3.47860	2.26950	K562	HNRNPA1
XRCC5	ENSG00000079246.11	4050.41860	6820.58480	-0.75180	17.41510	16.00050	K562	HNRNPC
XRCC5	ENSG00000079246.11	4209.06550	6090.23160	-0.53300	8.30110	6.24330	K562	HNRNPF
XRCC5	ENSG00000079246.11	10205.32220	7733.88340	0.40000	3.97270	2.45570	K562	HNRNPK
XRCC5	ENSG00000079246.11	8197.26240	9628.50460	-0.23220	2.91570	1.99850	K562	HNRNPU
XRCC5	ENSG00000079246.11	11446.67390	14303.50650	-0.32140	3.21520	2.36120	K562	HSPD1
XRCC5	ENSG00000079246.11	3974.20470	5992.99480	-0.59260	5.44490	4.07920	K562	KRR1
XRCC5	ENSG00000079246.11	5143.55320	6851.03060	-0.41360	5.66550	4.38390	K562	METAP2
XRCC5	ENSG00000079246.11	3931.01830	8724.39450	-1.15020	80.21360	77.10920	K562	MTPAP
XRCC5	ENSG00000079246.11	7216.64090	9693.98810	-0.42580	15.90740	14.32420	K562	NSUN2
XRCC5	ENSG00000079246.11	6118.42750	8131.09120	-0.41030	3.89660	2.90950	K562	PCBP3
XRCC5	ENSG00000079246.11	12983.34510	15731.49860	-0.27700	3.05120	1.54510	K562	PNPT1
XRCC5	ENSG00000079246.11	5246.33260	6236.90820	-0.24950	2.64020	1.86030	K562	POLR2G
XRCC5	ENSG00000079246.11	9462.95330	11976.35470	-0.33980	3.42200	2.49340	K562	PPIG
XRCC5	ENSG00000079246.11	7868.32820	6195.19960	0.34480	3.60530	2.74840	K562	PRPF8
XRCC5	ENSG00000079246.11	4708.58070	6115.21320	-0.37710	4.37130	3.19400	K562	PSIP1
XRCC5	ENSG00000079246.11	9310.39950	7906.27030	0.23570	2.35240	1.73260	K562	PTBP1
XRCC5	ENSG00000079246.11	13511.66110	17409.28700	-0.36570	7.22650	5.64620	K562	PUM2
XRCC5	ENSG00000079246.11	10539.11720	7443.10310	0.50170	6.86490	6.05440	K562	PUS1
XRCC5	ENSG00000079246.11	8608.75180	7251.90360	0.24730	3.21960	2.58740	K562	RBM15
XRCC5	ENSG00000079246.11	7296.76520	10384.60250	-0.50910	3.07560	1.45990	K562	SBDS
XRCC5	ENSG00000079246.11	3102.78980	4044.96050	-0.38260	3.85260	2.34070	K562	SLBP
XRCC5	ENSG00000079246.11	8098.06570	9799.38630	-0.27510	7.33050	5.88320	K562	SRPK2
XRCC5	ENSG00000079246.11	3236.61410	4417.62730	-0.44880	6.44540	4.72000	K562	SRSF4
XRCC5	ENSG00000079246.11	5709.72500	7319.57870	-0.35830	3.72780	2.47580	K562	SRSF5
XRCC5	ENSG00000079246.11	5596.39690	7138.64930	-0.35120	6.54870	4.74450	K562	SRSF7
XRCC5	ENSG00000079246.11	9655.42380	12660.47230	-0.39090	3.68450	2.20610	K562	STAU1
XRCC5	ENSG00000079246.11	4501.18360	5999.68790	-0.41460	3.14310	2.05850	K562	SUPV3L1
XRCC5	ENSG00000079246.11	8082.59460	6255.66540	0.36960	4.88910	3.79070	K562	SYNCRIP
XRCC5	ENSG00000079246.11	5652.61020	7566.77970	-0.42080	6.39970	5.07910	K562	TIA1
XRCC5	ENSG00000079246.11	4103.94540	5881.90320	-0.51930	5.83180	4.42070	K562	TIAL1
XRCC5	ENSG00000079246.11	5139.04030	6247.92490	-0.28190	2.63310	1.71540	K562	TRIM56
XRCC5	ENSG00000079246.11	9664.25730	12341.20220	-0.35280	3.36340	1.80700	K562	TRIP6
XRCC5	ENSG00000079246.11	7169.20290	6190.66400	0.21160	2.12470	1.42130	K562	U2AF2
XRCC5	ENSG00000079246.11	4875.02890	6349.23250	-0.38120	2.87310	1.83140	K562	UCHL5
XRCC5	ENSG00000079246.11	7162.11330	10278.70920	-0.52120	13.20070	11.77170	K562	UPF1
XRCC5	ENSG00000079246.11	6562.87900	8795.21880	-0.42240	6.28880	4.93720	K562	WDR3
XRCC5	ENSG00000079246.11	8143.92360	9145.65000	-0.16740	2.79790	1.94690	K562	WDR43
XRCC5	ENSG00000079246.11	2849.12700	6263.89910	-1.13650	10.01070	6.33680	K562	XRCC5
XRCC5	ENSG00000079246.11	5069.39980	6464.19190	-0.35070	2.81340	1.59490	K562	XRN2
XRCC5	ENSG00000079246.11	10009.69670	13745.81290	-0.45760	6.47760	5.06860	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for XRCC5 is not available on ENCORE database.

5 RBPs can affect the splicing of XRCC5 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	XRCC5	ENSG00000079246.11	chr2	+	216975189	216975274			216974073	216974180	216977738	216977825	0.05800	0.00000	0.00000	included	K562	PRPF8
SE	XRCC5	ENSG00000079246.11	chr2	+	216975189	216975274			216974073	216974180	216977738	216977825	0.05600	0.00000	0.00000	included	K562	AQR
SE	XRCC5	ENSG00000079246.11	chr2	+	216975189	216975274			216974073	216974180	216977738	216977825	0.06500	0.00000	0.00000	included	K562	EFTUD2
SE	XRCC5	ENSG00000079246.11	chr2	+	216975189	216975274			216974073	216974180	216977738	216977852	0.08000	0.00000	0.00000	included	HepG2	SF3A3
A3SS	XRCC5	ENSG00000079246.11	chr2	+	216981360	216981565			216981381	216981565	216977687	216977852	0.05200	0.00000	0.00000	longer	K562	AQR
MXE	XRCC5	ENSG00000079246.11	chr2	+	216975189	216975274	216977738	216977825	216974041	216974180	216982463	216982517	0.09100	0.00000	0.00000	1included	HepG2	SF3A3
MXE	XRCC5	ENSG00000079246.11	chr2	+	217054947	217055057	217059641	217059709	217026701	217026771	217069044	217069119	-0.06700	0.02039	0.09388	2included	HepG2	U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
XRCC5	Product_ID: A302-627A Lot_ID: 1 Source: Bethyl Labs Target Name: XRCC5-human
XRCC5	Product_ID: 201004 Lot_ID: DD0729 Source: Zen Bioscience Target Name: XRCC5-human
XRCC5	Product_ID: 2180S Lot_ID: 1 Source: Cell Signaling Technology Target Name: XRCC5-human

XRCC5

General Information

Functions

Localization(RBPImage: XRCC5)

Domains (AlphaFold: XRCC5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for XRCC5 is not avaliable on ENCORE database.

47 proteins are bound to XRCC5 RNA:

eCLIP assay for XRCC5 is not avaliable on ENCORE database.

Diffrential Expression

1,538 differentially expressed genes after Knockdown/Knockout XRCC5 protein :

119 RBPs can affect the gene expression of XRCC5 :

The Knockdown/knockout RNA-Seq assay for XRCC5 is not available on ENCORE database.

5 RBPs can affect the splicing of XRCC5 :

The Knockdown/knockout RNA-Seq assay for XRCC5 is not avaliable on ENCORE database.