C12orf4

General Information

Gene Name       : C12orf4
Gene ID             : ENSG00000047621.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C12orf4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C12orf4ENSG00000047621.1115.3316.0315.68ENCSR000AEF
HepG2C12orf4ENSG00000047621.114.757.466.11ENCSR985KAT
K562C12orf4ENSG00000047621.118.849.068.95ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C12orf4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C12orf4 RNA is bound by 1 proteins.  







eCLIP assay for C12orf4 is not avaliable on ENCORE database.





1 proteins are bound to C12orf4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1246385974638734-intron-Distal3.709314.36528HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C12orf4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C12orf4 is not available on ENCORE database.

  • 82 RBPs can affect the levels of C12orf4.  








The Knockdown/knockout RNA-Seq assay for C12orf4 is not available on ENCORE database.





82 RBPs can affect the gene expression of C12orf4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C12orf4ENSG00000047621.7222.65160149.843200.571202.320201.33550HepG2AATF
C12orf4ENSG00000047621.7302.75620197.908700.613202.558401.65190HepG2ABCF1
C12orf4ENSG00000047621.7275.52600190.016600.536003.241602.59120HepG2ACO1
C12orf4ENSG00000047621.7406.81970185.530701.132608.301807.43470HepG2AKAP1
C12orf4ENSG00000047621.7196.56650102.878100.934002.663001.91400HepG2CNOT7
C12orf4ENSG00000047621.7330.02340248.018600.412002.309801.71340HepG2CELF1
C12orf4ENSG00000047621.7201.36800266.67330-0.405202.060701.40760HepG2DAZAP1
C12orf4ENSG00000047621.7373.60920200.818500.895505.288703.57390HepG2DDX27
C12orf4ENSG00000047621.7336.29570177.728800.920005.970105.08420HepG2DDX3X
C12orf4ENSG00000047621.7231.28920136.348000.762303.355102.34690HepG2EEF2
C12orf4ENSG00000047621.7192.59650110.687300.799003.704402.66700HepG2EIF3D
C12orf4ENSG00000047621.7380.31190263.096100.531503.645302.70640HepG2EIF4G1
C12orf4ENSG00000047621.7517.23800345.686400.581305.139704.36590HepG2ETF1
C12orf4ENSG00000047621.7364.50490199.842200.867004.774903.78660HepG2FIP1L1
C12orf4ENSG00000047621.7310.26330203.720800.606802.660001.56380HepG2FUS
C12orf4ENSG00000047621.7281.62390163.639100.783204.336103.48450HepG2FXR1
C12orf4ENSG00000047621.7231.38190151.807300.607902.603001.95770HepG2G3BP1
C12orf4ENSG00000047621.7177.4349098.553600.848203.570702.54010HepG2GEMIN5
C12orf4ENSG00000047621.7303.84410197.061700.624603.035901.96590HepG2GNB2L1
C12orf4ENSG00000047621.7167.33920273.58120-0.709203.323502.62670HepG2GPKOW
C12orf4ENSG00000047621.7207.14350309.23640-0.578103.962703.11990HepG2HNRNPF
C12orf4ENSG00000047621.7231.54980304.50820-0.395201.997201.37480HepG2IGF2BP1
C12orf4ENSG00000047621.7237.31560154.311600.620902.721402.05070HepG2IGF2BP2
C12orf4ENSG00000047621.7321.27770144.803301.149603.792202.63830HepG2IGF2BP3
C12orf4ENSG00000047621.7204.90790125.771700.704102.649401.43550HepG2KRR1
C12orf4ENSG00000047621.7426.84030281.951500.598102.871502.02580HepG2LARP4
C12orf4ENSG00000047621.7290.87950163.696200.829304.677603.83120HepG2MAGOH
C12orf4ENSG00000047621.7427.98880164.614801.3784012.4289011.16020HepG2MATR3
C12orf4ENSG00000047621.7254.59210161.747900.654303.243002.37000HepG2MSI2
C12orf4ENSG00000047621.7299.22760168.494400.828404.705603.89240HepG2NCBP2
C12orf4ENSG00000047621.7110.45390231.48100-1.067405.763204.70560HepG2NSUN2
C12orf4ENSG00000047621.7227.92690144.228100.660103.506002.84050HepG2PCBP1
C12orf4ENSG00000047621.7338.56910202.732900.739803.604802.22520HepG2PRPF6
C12orf4ENSG00000047621.7239.71900146.740200.708004.084003.44820HepG2PTBP1
C12orf4ENSG00000047621.7185.27010252.42660-0.446201.833701.33500HepG2PUF60
C12orf4ENSG00000047621.7254.65550193.538400.395801.894301.36500HepG2PUS1
C12orf4ENSG00000047621.7442.08070288.928500.613504.804104.16880HepG2RBM22
C12orf4ENSG00000047621.7337.35570163.322101.046508.884508.01580HepG2NELFE
C12orf4ENSG00000047621.7219.93120152.086400.532102.225701.66600HepG2RECQL
C12orf4ENSG00000047621.7169.03070107.701000.650202.474001.88930HepG2RPS19
C12orf4ENSG00000047621.7123.12470190.53970-0.630003.048502.37840HepG2SAFB2
C12orf4ENSG00000047621.7655.10250159.484202.0382045.4301044.02260HepG2SRSF1
C12orf4ENSG00000047621.7350.34990249.237400.491203.248502.57960HepG2SRSF5
C12orf4ENSG00000047621.7222.27140303.81950-0.450902.667601.98440HepG2SRSF7
C12orf4ENSG00000047621.7416.23400283.449200.554204.538803.77840HepG2SUCLG1
C12orf4ENSG00000047621.7168.83070254.40940-0.591602.625301.91600HepG2TARDBP
C12orf4ENSG00000047621.7235.87230123.162200.937303.426702.24430HepG2TBRG4
C12orf4ENSG00000047621.7109.78100209.75330-0.934106.256805.47020HepG2TRIM56
C12orf4ENSG00000047621.7231.34280173.487300.415101.816001.30840HepG2UTP3
C12orf4ENSG00000047621.7303.29850183.009100.728703.283901.89770HepG2XRCC5
C12orf4ENSG00000047621.7273.98110178.827300.615403.101501.84310K562AARS
C12orf4ENSG00000047621.7144.07520346.38450-1.2656013.4949012.34400K562AGGF1
C12orf4ENSG00000047621.7192.42590360.41840-0.905407.396306.28480K562AKAP8L
C12orf4ENSG00000047621.71046.19950509.062101.0391014.2148013.03020K562AQR
C12orf4ENSG00000047621.7195.48340378.14610-0.951907.587505.96120K562ATP5C1
C12orf4ENSG00000047621.7396.42350266.816200.571103.222602.27910K562BOP1
C12orf4ENSG00000047621.790.98430139.99620-0.621702.274501.33590K562DDX3X
C12orf4ENSG00000047621.7692.37840408.215900.7621010.911909.71530K562DDX47
C12orf4ENSG00000047621.7267.76490387.90100-0.534704.058902.97050K562DKC1
C12orf4ENSG00000047621.7229.23870132.103500.795102.310401.40050K562EIF3A
C12orf4ENSG00000047621.7446.36450152.102401.5531022.9868021.35810K562FXR1
C12orf4ENSG00000047621.7132.35380222.91520-0.752104.098702.31990K562G3BP1
C12orf4ENSG00000047621.7276.78380156.012900.827004.411803.47470K562G3BP2
C12orf4ENSG00000047621.7151.98590302.85600-0.994704.178202.58510K562HNRNPA2B1
C12orf4ENSG00000047621.7304.48590195.781700.637003.630402.95860K562HNRNPC
C12orf4ENSG00000047621.7185.51860368.89320-0.991609.051707.05470K562HNRNPL
C12orf4ENSG00000047621.7156.70780233.24500-0.573802.196601.31190K562IGF2BP2
C12orf4ENSG00000047621.7232.68970382.53030-0.717204.081003.05250K562KIF1C
C12orf4ENSG00000047621.7362.40380244.526500.567503.802302.70640K562MATR3
C12orf4ENSG00000047621.7288.62890428.52550-0.570204.350103.16050K562MBNL1
C12orf4ENSG00000047621.7161.02100300.36220-0.899504.755003.49920K562NAA15
C12orf4ENSG00000047621.7242.24830325.11950-0.424502.560901.83930K562NSUN2
C12orf4ENSG00000047621.7150.16020264.92570-0.819102.751701.76450K562PABPN1
C12orf4ENSG00000047621.7548.92510340.949300.687003.492602.55790K562PCBP3
C12orf4ENSG00000047621.7429.74920261.515000.716502.538701.77460K562POLR2G
C12orf4ENSG00000047621.7344.43970474.14970-0.461102.786201.96220K562PPIG
C12orf4ENSG00000047621.7414.67920209.594300.984307.939106.66110K562PRPF8
C12orf4ENSG00000047621.7102.81800175.52550-0.771602.807101.89520K562PSIP1
C12orf4ENSG00000047621.7139.69350357.51030-1.355707.789806.92530K562PUS1
C12orf4ENSG00000047621.7172.78230348.27850-1.011306.878405.97120K562RBM15
C12orf4ENSG00000047621.7160.81070325.93210-1.019203.856501.95410K562RBM39
C12orf4ENSG00000047621.7339.18890213.512700.667702.869002.03620K562RPS19
C12orf4ENSG00000047621.7375.51770240.920400.640204.144602.33980K562SDAD1
C12orf4ENSG00000047621.795.14070242.28840-1.348604.916803.16420K562SF1
C12orf4ENSG00000047621.7216.59930320.80440-0.566703.659702.72950K562SF3A3
C12orf4ENSG00000047621.7475.57760233.404901.0267011.249409.83690K562SRSF1
C12orf4ENSG00000047621.7386.22010262.312900.558003.779402.81870K562SYNCRIP
C12orf4ENSG00000047621.7110.24830179.29260-0.701602.772001.82510K562TRIM56
C12orf4ENSG00000047621.7217.31370156.303400.475302.135201.43000K562U2AF2
C12orf4ENSG00000047621.7202.54010362.40320-0.839403.633802.08940K562UTP18
C12orf4ENSG00000047621.7364.58830221.486900.718902.967201.32090K562XRCC6
C12orf4ENSG00000047621.7384.54280573.58150-0.576902.122701.37710K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C12orf4 is not available on ENCORE database.





5 RBPs can affect the splicing of C12orf4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC12orf4ENSG00000047621.7chr12-464518246453854643210464346846475744647637-0.116000.011140.08843excludedK562AQR
SEC12orf4ENSG00000047621.7chr12-462722346274214614471461454646344194634541-0.452000.008630.09403excludedK562PUS1
SEC12orf4ENSG00000047621.7chr12-462622646263554614471461454646272234627421-0.237000.000540.04122excludedK562HNRNPL
SEC12orf4ENSG00000047621.7chr12-462622646263554614471461454646272234627421-0.177000.000030.01018excludedHepG2HNRNPUL1
SEC12orf4ENSG00000047621.7chr12-462622646263554614471461454646272234627421-0.338000.000400.01485excludedHepG2SF3A3
A3SSC12orf4ENSG00000047621.7chr12-4634624463482746346244634749463903446392390.272000.000000.00005longerK562AQR
A3SSC12orf4ENSG00000047621.7chr12-463462446348274634624463478746390344639239-0.547000.001590.01054shorterK562AQR
MXEC12orf4ENSG00000047621.7chr12-46093034609368461447146145464600342460040046262264626355-0.198000.016840.095982includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C12orf4 is not avaliable on ENCORE database.