CDH1

General Information

Gene Name       : CDH1
Gene ID             : ENSG00000039068.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CDH1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDH1ENSG00000039068.1819.4617.6318.55ENCSR000AEF
HepG2CDH1ENSG00000039068.1811.056.078.56ENCSR985KAT
K562CDH1ENSG00000039068.180.060.010.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDH1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDH1 RNA is bound by 4 proteins.  







eCLIP assay for CDH1 is not avaliable on ENCORE database.





4 proteins are bound to CDH1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr166886794568867984+3'-UTR3.899043.19668HepG2UPF1
chr166886787468867945+3'-UTR3.134856.38902HepG2UPF1
chr166884957668849649+3'-UTR,CDS3.613153.85049HepG2SND1
chr166886923268869386+3'-UTR3.940085.01462HepG2FUBP3
chr166877727268777324+intron-Distal3.697433.89405HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDH1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDH1 is not available on ENCORE database.

  • 160 RBPs can affect the levels of CDH1.  








The Knockdown/knockout RNA-Seq assay for CDH1 is not available on ENCORE database.





160 RBPs can affect the gene expression of CDH1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDH1ENSG00000039068.14384.69210838.10320-1.1234016.7103014.41690HepG2AATF
CDH1ENSG00000039068.141298.46890770.154300.753507.208705.78680HepG2ABCF1
CDH1ENSG00000039068.14134.22670576.05060-2.1015026.9195025.47970HepG2ACO1
CDH1ENSG00000039068.1462.629803917.45120-5.96690269.12660265.33960HepG2AKAP1
CDH1ENSG00000039068.14587.59330874.44380-0.573504.360803.06260HepG2AKAP8
CDH1ENSG00000039068.141422.28670578.646001.2974037.6221035.32870HepG2AKAP8L
CDH1ENSG00000039068.142157.944303241.34820-0.586906.731605.53130HepG2ASCC1
CDH1ENSG00000039068.141228.50720694.499600.8228010.554108.07180HepG2ATP5C1
CDH1ENSG00000039068.14531.41280678.25670-0.352002.698902.02060HepG2AUH
CDH1ENSG00000039068.142851.02620621.571402.1974060.9909057.76790HepG2BCLAF1
CDH1ENSG00000039068.14930.59960576.745000.690105.583603.87600HepG2BUD13
CDH1ENSG00000039068.142315.20230816.403801.5037053.8155051.27610HepG2CALR
CDH1ENSG00000039068.14584.704401039.25790-0.829807.326305.72110HepG2CCAR1
CDH1ENSG00000039068.141580.847002616.25230-0.726803.549601.36680HepG2CDC40
CDH1ENSG00000039068.141206.03070575.791901.0665032.3309030.62170HepG2CKAP4
CDH1ENSG00000039068.14190.94530768.38930-2.0087024.5886022.37320HepG2CNOT7
CDH1ENSG00000039068.141244.29810718.890500.791406.947005.89600HepG2CPSF6
CDH1ENSG00000039068.14897.19950633.896000.501103.983902.66450HepG2CPSF7
CDH1ENSG00000039068.141385.00060626.677301.1440030.3805027.40130HepG2YBX3
CDH1ENSG00000039068.14579.94520859.08850-0.566907.536706.57320HepG2CELF1
CDH1ENSG00000039068.141590.49350923.869200.7836022.2052020.46900HepG2DAZAP1
CDH1ENSG00000039068.14969.67970627.514700.627808.719806.85010HepG2DDX1
CDH1ENSG00000039068.145876.48240924.384002.6683057.4989055.07450HepG2DDX21
CDH1ENSG00000039068.141891.61320904.827901.0638024.8523022.43650HepG2DDX24
CDH1ENSG00000039068.14330.51340658.06740-0.993507.867605.82430HepG2DDX27
CDH1ENSG00000039068.14789.87260532.838400.567804.943003.12990HepG2DDX28
CDH1ENSG00000039068.145099.834003752.592300.442504.185903.42980HepG2DDX3X
CDH1ENSG00000039068.141912.044401066.057700.8427013.9921011.48590HepG2DDX47
CDH1ENSG00000039068.141395.63700703.242400.9887012.4543010.96140HepG2DDX55
CDH1ENSG00000039068.143635.66460661.868202.4575083.2413079.94210HepG2DDX5
CDH1ENSG00000039068.14522.818203223.62400-2.6243081.1612078.61070HepG2DDX6
CDH1ENSG00000039068.141931.40730593.472101.7023051.6402048.62460HepG2DHX30
CDH1ENSG00000039068.141520.99540551.089801.4646053.4916051.49900HepG2DKC1
CDH1ENSG00000039068.141619.39970615.297901.3960048.1827045.75950HepG2DNAJC21
CDH1ENSG00000039068.14867.41260609.940500.507907.556406.55070HepG2DNAJC2
CDH1ENSG00000039068.147382.025103098.878901.2522029.3568027.56730HepG2EIF2S1
CDH1ENSG00000039068.14410.11140667.15850-0.702005.469304.23000HepG2EIF3D
CDH1ENSG00000039068.14752.749803334.38480-2.1472046.6200044.07250HepG2EIF4B
CDH1ENSG00000039068.142852.11580911.334601.6459029.5911027.48770HepG2EIF4G1
CDH1ENSG00000039068.142119.39480873.021601.2795028.1859025.87570HepG2EIF4G2
CDH1ENSG00000039068.141263.75600666.929300.9220012.4629010.43270HepG2ESF1
CDH1ENSG00000039068.145548.87680778.684302.83300300.00000296.00000HepG2ETF1
CDH1ENSG00000039068.141049.86460562.785800.8994011.568809.89330HepG2EWSR1
CDH1ENSG00000039068.141121.18130670.884500.740804.261801.77870HepG2FASTKD1
CDH1ENSG00000039068.14670.63540881.03480-0.393703.117501.91000HepG2FASTKD2
CDH1ENSG00000039068.14393.93650777.59990-0.981106.466305.33680HepG2FIP1L1
CDH1ENSG00000039068.141235.78240585.375801.0779015.0572012.57770HepG2FKBP4
CDH1ENSG00000039068.141259.12870864.226900.542804.293902.23560HepG2FMR1
CDH1ENSG00000039068.144599.71050720.033902.6753032.3610029.40000HepG2FTO
CDH1ENSG00000039068.14871.230002449.61860-1.4914046.5481043.68900HepG2FUBP3
CDH1ENSG00000039068.14223.503001090.65500-2.2868030.2315027.30060HepG2FUS
CDH1ENSG00000039068.14517.350803455.37100-2.73960105.96570102.66930HepG2FXR1
CDH1ENSG00000039068.141495.862403205.31010-1.0995019.1062017.43340HepG2G3BP1
CDH1ENSG00000039068.142566.633703402.91710-0.406903.711202.67020HepG2G3BP2
CDH1ENSG00000039068.141323.06850796.060200.732807.302505.63640HepG2GNB2L1
CDH1ENSG00000039068.147574.11130815.035503.21600144.99690141.70160HepG2GPKOW
CDH1ENSG00000039068.14214.22070711.33360-1.7314020.9666018.11330HepG2GRSF1
CDH1ENSG00000039068.14692.57560549.882400.332702.919701.92050HepG2HDGF
CDH1ENSG00000039068.142760.637801044.766501.401703.565101.96770HepG2HLTF
CDH1ENSG00000039068.141921.63200621.193401.629109.024107.95520HepG2HNRNPA1
CDH1ENSG00000039068.141584.17950848.995600.8998022.8561020.70320HepG2HNRNPA2B1
CDH1ENSG00000039068.14330.58670634.62430-0.940908.166105.66670HepG2HNRNPAB
CDH1ENSG00000039068.141828.39470665.586601.4578021.8614018.19960HepG2HNRNPD
CDH1ENSG00000039068.141220.17890759.286900.6843012.8913011.49520HepG2HNRNPF
CDH1ENSG00000039068.14816.790103245.79110-1.9905069.9394066.90490HepG2HNRNPK
CDH1ENSG00000039068.14508.97360841.61610-0.7256013.3482011.97030HepG2HNRNPL
CDH1ENSG00000039068.1410264.49520777.792803.72200228.21830224.33220HepG2HNRNPLL
CDH1ENSG00000039068.141737.18430536.313201.6955050.6003047.59350HepG2HNRNPM
CDH1ENSG00000039068.14999.60720686.417800.542208.082007.08640HepG2HNRNPU
CDH1ENSG00000039068.14488.27230952.04130-0.963309.718107.49620HepG2HSPD1
CDH1ENSG00000039068.142020.15050747.678701.4339012.6714011.23930HepG2IGF2BP1
CDH1ENSG00000039068.14429.713603057.67060-2.8310029.4441026.66990HepG2IGF2BP3
CDH1ENSG00000039068.14942.54820701.148700.426706.103305.05730HepG2ILF2
CDH1ENSG00000039068.141010.63520732.320500.464602.899401.67440HepG2KHDRBS1
CDH1ENSG00000039068.14941.15050526.499400.8379018.4661016.13380HepG2KIF1C
CDH1ENSG00000039068.14403.44780779.58570-0.950303.842202.49870HepG2LARP7
CDH1ENSG00000039068.141561.398303456.57780-1.1465022.0724020.31200HepG2MAGOH
CDH1ENSG00000039068.14547.040003475.90740-2.6677088.0175084.85560HepG2MATR3
CDH1ENSG00000039068.14339.88200698.24350-1.038706.441204.88840HepG2METAP2
CDH1ENSG00000039068.142131.11410629.025101.7603036.6110034.24770HepG2MSI2
CDH1ENSG00000039068.142693.30100792.991701.7639019.3622016.90380HepG2MTPAP
CDH1ENSG00000039068.14957.03250528.269700.857203.565802.18760HepG2NAA15
CDH1ENSG00000039068.144492.876403557.771100.336602.538801.93040HepG2NCBP2
CDH1ENSG00000039068.142023.09530902.202301.164904.868802.97100HepG2NKRF
CDH1ENSG00000039068.14729.35340916.09940-0.328902.093101.42780HepG2NOL12
CDH1ENSG00000039068.141538.73690645.629501.2529011.014108.77090HepG2NONO
CDH1ENSG00000039068.141656.59720689.577001.2643015.4512013.84180HepG2NSUN2
CDH1ENSG00000039068.141199.27610845.923600.503503.687301.82080HepG2NUP35
CDH1ENSG00000039068.141651.72780702.356101.233608.682707.06690HepG2PABPC1
CDH1ENSG00000039068.146386.042603168.365701.0111018.8183016.97890HepG2PABPC4
CDH1ENSG00000039068.14205.03910679.40460-1.7284032.4962030.23290HepG2PARN
CDH1ENSG00000039068.141374.521203025.74310-1.1384051.9877049.98420HepG2PCBP1
CDH1ENSG00000039068.141422.330901032.510000.462002.533001.54020HepG2PCBP2
CDH1ENSG00000039068.141047.58450748.574200.484703.085101.31100HepG2PHF6
CDH1ENSG00000039068.141102.08620612.225400.8480012.6921011.17910HepG2PPIL4
CDH1ENSG00000039068.141429.16060584.678101.2894042.4425040.17550HepG2PRPF4
CDH1ENSG00000039068.14484.717501085.46680-1.1631011.514709.24680HepG2PRPF6
CDH1ENSG00000039068.143185.07480542.635102.5532090.5245087.00250HepG2PRPF8
CDH1ENSG00000039068.141866.459403078.90280-0.7221021.8052020.55040HepG2PTBP1
CDH1ENSG00000039068.144972.76140874.458702.5075091.6280088.80680HepG2PUF60
CDH1ENSG00000039068.14564.09650928.23160-0.7185014.4234013.29070HepG2PUM1
CDH1ENSG00000039068.144776.30960927.581502.3643025.9746024.04930HepG2PUM2
CDH1ENSG00000039068.142309.62020586.725301.97680104.71870102.13840HepG2PUS1
CDH1ENSG00000039068.142860.815303334.32290-0.221002.161601.59760HepG2QKI
CDH1ENSG00000039068.14273.42720996.53070-1.8658016.4393014.86470HepG2RAVER1
CDH1ENSG00000039068.14551.42880799.77410-0.536402.454801.64230HepG2RBM15
CDH1ENSG00000039068.14987.27490650.845400.601008.389807.60150HepG2RBM22
CDH1ENSG00000039068.146382.442803026.189801.0765017.7211016.11500HepG2RBM25
CDH1ENSG00000039068.14309.50440939.99820-1.602707.257405.64140HepG2RBM27
CDH1ENSG00000039068.14459.04810742.18330-0.693104.636702.66480HepG2RBM47
CDH1ENSG00000039068.141161.246003426.44340-1.5610091.3581089.36790HepG2NELFE
CDH1ENSG00000039068.14822.797703191.41120-1.95560133.43790130.62080HepG2RECQL
CDH1ENSG00000039068.142112.24220817.971401.3686017.7406016.30360HepG2RPLP0
CDH1ENSG00000039068.14608.04350978.65120-0.686604.503803.30570HepG2RPS10
CDH1ENSG00000039068.14873.36200649.174500.427903.520802.83580HepG2RPS19
CDH1ENSG00000039068.142536.16610867.024901.5484042.8310039.98230HepG2RPS2
CDH1ENSG00000039068.142471.44480771.727001.6791029.8926027.39420HepG2RPS3A
CDH1ENSG00000039068.141188.26740884.939200.425102.460401.44910HepG2RPS5
CDH1ENSG00000039068.141104.40350611.270500.8533020.0842018.57130HepG2SAFB2
CDH1ENSG00000039068.141089.76620733.026100.572003.191601.52020HepG2SBDS
CDH1ENSG00000039068.142027.12340651.547901.6374041.6210038.56790HepG2SERBP1
CDH1ENSG00000039068.141011.726201427.29400-0.496503.482902.72280HepG2SF3A3
CDH1ENSG00000039068.143041.37360769.928801.9818060.0401057.44460HepG2SF3B1
CDH1ENSG00000039068.141710.648603205.36290-0.9059034.5362032.86720HepG2SF3B4
CDH1ENSG00000039068.142143.63110838.377301.3543040.0969038.09250HepG2SLBP
CDH1ENSG00000039068.142821.82100972.047201.5374011.688708.76790HepG2SLTM
CDH1ENSG00000039068.14684.632801015.36170-0.568603.789902.65730HepG2SMNDC1
CDH1ENSG00000039068.14770.53680416.972200.885802.748501.44190HepG2SNRNP200
CDH1ENSG00000039068.141433.47080856.656500.742604.111303.14930HepG2SNRNP70
CDH1ENSG00000039068.141602.11000735.122601.1238039.0293037.71710HepG2SRFBP1
CDH1ENSG00000039068.142853.092903345.77520-0.229803.285902.78160HepG2SRSF1
CDH1ENSG00000039068.14698.44700863.34680-0.305802.853902.21850HepG2SRSF5
CDH1ENSG00000039068.141657.36950745.982001.1516038.7275036.74610HepG2SRSF7
CDH1ENSG00000039068.141106.455502722.02700-1.2987066.6488064.68900HepG2SRSF9
CDH1ENSG00000039068.14484.82770638.28950-0.396703.376102.82220HepG2SSB
CDH1ENSG00000039068.14458.03930948.65300-1.0504012.7578010.33940HepG2SSRP1
CDH1ENSG00000039068.144266.15970519.098203.0388055.7820052.26230HepG2STAU1
CDH1ENSG00000039068.141705.71270931.245200.873003.310801.98960HepG2SUB1
CDH1ENSG00000039068.141831.54860524.803901.8031058.9136055.45570HepG2SUPT6H
CDH1ENSG00000039068.143968.39870700.107702.5028083.5580080.98450HepG2SUPV3L1
CDH1ENSG00000039068.141790.749503007.50850-0.7480020.0624018.74930HepG2TAF15
CDH1ENSG00000039068.141762.69540931.789000.919605.187803.76520HepG2TBRG4
CDH1ENSG00000039068.14264.06750469.28250-0.829505.530804.19150HepG2TFIP11
CDH1ENSG00000039068.141821.208902763.28340-0.6015010.161208.57760HepG2TIA1
CDH1ENSG00000039068.143307.91280666.888602.31030130.25960127.81120HepG2TIAL1
CDH1ENSG00000039068.14828.79740672.951600.300402.770502.20610HepG2TRIM56
CDH1ENSG00000039068.141227.43650854.235800.522805.592004.29750HepG2TUFM
CDH1ENSG00000039068.141463.42380486.085301.590006.956205.32130HepG2U2AF2
CDH1ENSG00000039068.141679.67860904.146900.8935010.361908.70610HepG2UBE2L3
CDH1ENSG00000039068.1430.62100413.60300-3.7557059.5896056.42230HepG2UCHL5
CDH1ENSG00000039068.143633.621601265.791401.52130102.96320100.05490HepG2UPF1
CDH1ENSG00000039068.14973.94720641.191600.603004.282703.01920HepG2UPF2
CDH1ENSG00000039068.141895.439201301.057200.5427010.446008.57120HepG2UTP18
CDH1ENSG00000039068.14278.542601222.07200-2.1334084.5655082.01200HepG2UTP3
CDH1ENSG00000039068.141844.01750691.246001.4155020.4909017.66970HepG2XPO5
CDH1ENSG00000039068.14442.23800979.70600-1.1475011.107608.64910HepG2XRCC5
CDH1ENSG00000039068.141596.372801095.789400.542703.529702.33180HepG2XRCC6
CDH1ENSG00000039068.14710.64810576.999600.300502.546401.89720HepG2ZC3H8
CDH1ENSG00000039068.142114.856201392.128400.603209.089108.24450HepG2ZNF622
CDH1ENSG00000039068.14666.11830995.37930-0.579503.938602.36550HepG2ZRANB2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDH1 is not available on ENCORE database.





3 RBPs can affect the splicing of CDH1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECDH1ENSG00000039068.14chr16+688531826885332868849417688496626885590368856128-0.095000.000170.00723excludedHepG2SF3A3
MXECDH1ENSG00000039068.14chr16+6884259568842751688440996884424468842326688424706884558668845762-0.255000.000900.054992includedHepG2IGF2BP3
MXECDH1ENSG00000039068.14chr16+6884259568842751688440996884424468842326688424706884558668845762-0.089000.002560.084322includedHepG2DROSHA

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CDH1 is not avaliable on ENCORE database.