SBDS

General Information

Gene Name       : SBDS
Gene ID             : ENSG00000126524.9
Essential Gene : Yes

Functions

Localization(RBPImage: SBDS)

Domains (AlphaFold: SBDS)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SBDSENSG00000126524.938.6231.7135.16ENCSR000AEF
HepG2SBDSENSG00000126524.946.0773.6159.84ENCSR985KAT
K562SBDSENSG00000126524.9115.20117.11116.16ENCSR000AEO

Assays

3 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 352ENCSR059CWFSBDSK562ReleasedENCAB894TLTENCSR038TMA  
knockdown followed by RNA-seq SBDS-BGKLV24-K562ENCSR219DXZSBDSK562ReleasedENCSR419JMU   shRNAKD% = 75.6,82.6
knockdown followed by RNA-seq SBDS-BGHLV22-HepG2ENCSR343DHNSBDSHepG2ReleasedENCSR279HMU   shRNAKD% = 62.2,60.0






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
SBDS352K562ENCSR059CWFENCSR038TMAENCAB894TLTGTX10916840023ReleasedENCODE3


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
SBDSENCAB894TLTGTX10916840023Released, ENCODE3BGHLV22-47, Released, ENCODE3BGKLV24-55, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
SBDSK562shRNAENCSR219DXZENCSR419JMUSBDS_BGKLV24_55B,SBDS_BGKLV24_56Bnon-target_BGKLV24_1B,non-target_BGKLV24_2B75.6,82.6ReleasedENCODE3
SBDSHepG2shRNAENCSR343DHNENCSR279HMUSBDS-BGHLV22-47,SBDS-BGHLV22-48non-target-BGHLV22-1_17746,non-target-BGHLV22-2_1774762.2,60.0ReleasedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    SBDS: Click to RBP Image Database
  • Nuclei
  • Nucleolus
  • Cytoplasm
  • Cytoskeleton
  • Microtubule
  • Cytosolic
  • Mitotic-Apparatus (Spindle; Centrosomes)












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    SBDSProduct_ID: GTX109168
    Lot_ID: 40023
    Source: GeneTex
    Target Name: SBDS-human    		 SBDS_Secondary_Western.png<br>Caption: Western blot following shRNA against SBDS in K562 and HepG2 whole cell lysate using SBDS specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against SBDS. Lanes 5-8 follow the same pattern, but in HepG2. SBDS protein appears as the green band, Tubulin serves as a control and appears in red.
    		 K562_Genetex_GTX109168_40023_SBDS.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using SBDS specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-SBDS antibody (lanes under 'SBDS').
    		 SBDS_Secondary_Western.png<br>Caption: Western blot following shRNA against SBDS in K562 and HepG2 whole cell lysate using SBDS specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against SBDS. Lanes 5-8 follow the same pattern, but in HepG2. SBDS protein appears as the green band, Tubulin serves as a control and appears in red.








    RNA Targets
    • SBDS protein binds to 5 RNA regions.  





    Proteins bound to RNA
    • SBDS RNA is bound by 8 proteins.  






    SBDS protein has 5 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 5 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    SBDSchr205760730957607395-3.055804.26674K562ATP5E5'-UTR,intron-Distal,intron-Proximal
    SBDSchr753403865340391+4.898054.19857K562SLC29A4intron-Proximal
    SBDSchr147607054776070598+3.5391211.05504K562FLVCR2intron-Distal
    SBDSchr154549262945492647-3.493037.85449K562SHFintron-Distal
    SBDSchr753403915340411+4.898054.19857K562SLC29A4intron-Distal,intron-Proximal




    8 proteins are bound to SBDS RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr76645332966453355-3'-UTR,intron-Distal3.664073.22721K562YBX3
    chr76645283666452930-3'-UTR,intron-Distal3.617263.99895HepG2SUB1
    chr76645617266456222-3'-UTR,CDS,intron-Distal3.851243.05368K562ZNF800
    chr76645295566453059-3'-UTR,intron-Distal3.9381631.19954K562PUM2
    chr76645326966453313-3'-UTR,intron-Distal3.063613.07714K562YBX3
    chr76646039666460470-5'-UTR,CDS,intron-Distal5.389558.39621K562DDX3X
    chr76645820666458301-5'-UTR,CDS,intron-Distal3.020656.24135K562YBX3
    chr76646047066460530-5'-UTR,intron-Distal4.220026.20524K562DDX3X
    chr76646022466460279-CDS,intron-Distal3.538674.28285K562AQR
    chr76646030766460365-CDS,intron-Distal4.087304.07395K562SRSF1
    chr76646004066460083-intron-Distal3.834623.31110K562TIA1
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein SBDS and its RNA.



    Diffrential Expression
    • 1,323 differentially expressed genes after Knockdown/Knockout SBDS protein.  





    • 97 RBPs can affect the levels of SBDS.  







    1,323 differentially expressed genes after Knockdown/Knockout SBDS protein :

    Only display 100 entries as example. Please click "View All" button to see all 1,323 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    LASP1ENSG00000002834.133548.526505061.88630-0.512503.083001.44190HepG2SBDS
    GCFC2ENSG00000005436.9802.17530490.200200.710404.268802.36050HepG2SBDS
    FBXL3ENSG00000005812.6361.93600554.81650-0.616303.103901.45630HepG2SBDS
    PDK2ENSG00000005882.7358.80680220.301400.703603.292201.59660HepG2SBDS
    CX3CL1ENSG00000006210.62625.628401569.431200.742305.587003.45400HepG2SBDS
    MAP3K9ENSG00000006432.11381.87240867.56570-1.1839010.572207.81550HepG2SBDS
    IFRD1ENSG00000006652.91054.144601520.09520-0.528102.949501.34210HepG2SBDS
    PAX6ENSG00000007372.1619.0570080.53070-2.079206.103303.89610HepG2SBDS
    MLXIPLENSG00000009950.112152.702701060.869701.020809.606306.98590HepG2SBDS
    CD9ENSG00000010278.7271.21660605.90980-1.159709.194306.63180HepG2SBDS
    IDSENSG00000010404.13656.90940987.49980-0.588103.256101.56960HepG2SBDS
    TMEM159ENSG00000011638.6168.93530317.81480-0.911704.829802.82860HepG2SBDS
    GPRC5AENSG00000013588.543.89110209.45980-2.254703.772301.96540HepG2SBDS
    MTMR11ENSG00000014914.1574.82270189.76120-1.342606.858004.54240HepG2SBDS
    NPC1L1ENSG00000015520.10821.36820437.646200.908204.976902.95660HepG2SBDS
    SRCIN1ENSG00000017373.11343.81850172.613000.994005.650203.50950HepG2SBDS
    CYP24A1ENSG00000019186.5136.59250470.31570-1.7838017.1565013.62850HepG2SBDS
    FUT8ENSG00000033170.12204.50250353.32440-0.788903.935802.08440HepG2SBDS
    UBA6ENSG00000033178.81243.491901812.23610-0.543403.165601.50450HepG2SBDS
    SLC4A7ENSG00000033867.121624.791602479.08790-0.609603.968102.11400HepG2SBDS
    TMSB10ENSG00000034510.43356.016805573.30960-0.731804.432302.49020HepG2SBDS
    TIMP2ENSG00000035862.81590.069002690.36810-0.758705.799403.62390HepG2SBDS
    VCANENSG00000038427.111343.160503250.18640-1.274906.216104.00280HepG2SBDS
    CDH1ENSG00000039068.141089.76620733.026100.572003.191601.52020HepG2SBDS
    RAI14ENSG00000039560.9631.987901119.24790-0.824605.954503.75910HepG2SBDS
    WWC3ENSG00000047644.13186.97710379.24000-1.020204.266802.36050HepG2SBDS
    RRM2BENSG00000048392.71303.992301870.59330-0.520602.923701.31930HepG2SBDS
    KITLGENSG00000049130.9115.40790297.79930-1.367608.946606.42310HepG2SBDS
    PRSS8ENSG00000052344.11401.23230221.108000.859603.419001.69280HepG2SBDS
    MSMO1ENSG00000052802.85356.822403472.102300.625504.324302.39980HepG2SBDS
    OPN3ENSG00000054277.8368.83900607.50880-0.719904.110502.23470HepG2SBDS
    ITIH1ENSG00000055957.6592.38880300.349700.979806.796304.49590HepG2SBDS
    F7ENSG00000057593.91090.23210661.862100.719904.689302.71340HepG2SBDS
    SLC2A3ENSG00000059804.116180.5661014966.33060-1.275903.756001.95440HepG2SBDS
    CREB3L3ENSG00000060566.9259.9090087.126701.576707.417505.02660HepG2SBDS
    VMP1ENSG00000062716.64719.183407253.03720-0.620004.356302.42860HepG2SBDS
    ISOC2ENSG00000063241.3390.33030246.527000.662803.071401.43440HepG2SBDS
    NGFRENSG00000064300.466.56470165.36220-1.312806.053203.85190HepG2SBDS
    CTSAENSG00000064601.121235.614402369.55500-0.939408.371805.88970HepG2SBDS
    SLC12A2ENSG00000064651.9254.57060424.32280-0.737103.792701.98040HepG2SBDS
    MTHFD2ENSG00000065911.73377.135505647.73710-0.741905.071603.03340HepG2SBDS
    NGEFENSG00000066248.10737.49550474.644400.635703.491501.74920HepG2SBDS
    ACSM2BENSG00000066813.101690.02280694.001301.2839013.9182010.78000HepG2SBDS
    DDX3YENSG00000067048.125259.671907482.31320-0.508503.081001.44120HepG2SBDS
    KLF6ENSG00000067082.102905.689105063.56840-0.801306.699804.40680HepG2SBDS
    FGFR3ENSG00000068078.135027.303303264.766000.622704.316302.39380HepG2SBDS
    PTPN3ENSG00000070159.9781.369201156.19820-0.565303.174401.51080HepG2SBDS
    LMCD1ENSG00000071282.7132.75280236.51930-0.833203.235401.55430HepG2SBDS
    TEAD2ENSG00000074219.9230.55180380.57690-0.723103.547601.78430HepG2SBDS
    SEMA3AENSG00000075213.654.14080140.86660-1.379505.910403.72370HepG2SBDS
    VPS9D1ENSG00000075399.8230.65860138.247600.738402.913101.31060HepG2SBDS
    MCAMENSG00000076706.10757.241701524.24490-1.009308.966806.43700HepG2SBDS
    CAMSAP3ENSG00000076826.5733.57620453.802000.692803.123601.47180HepG2SBDS
    GPR137BENSG00000077585.941.4704097.05170-1.226703.886102.04900HepG2SBDS
    NAALAD2ENSG00000077616.6494.07340295.759200.740203.993602.13690HepG2SBDS
    FGFR1ENSG00000077782.15720.808701296.96820-0.847506.445904.20110HepG2SBDS
    EDN1ENSG00000078401.6303.95930547.96530-0.850205.273903.20630HepG2SBDS
    CEACAM1ENSG00000079385.173220.418404571.66470-0.505503.003101.38500HepG2SBDS
    FAM135AENSG00000082269.12740.357001238.72690-0.742603.876502.04180HepG2SBDS
    MMP2ENSG00000087245.8201.70520360.62350-0.838204.399302.46360HepG2SBDS
    EDEM2ENSG00000088298.8470.43120714.36820-0.602703.181901.51490HepG2SBDS
    SLC4A11ENSG00000088836.8263.48470481.42660-0.869603.184001.51610HepG2SBDS
    P2RX7ENSG00000089041.1288.0424037.708201.223203.502801.75440HepG2SBDS
    OAS1ENSG00000089127.8119.16030227.92430-0.935704.271902.36050HepG2SBDS
    FXYD5ENSG00000089327.107.5456029.96810-1.989703.028001.40600HepG2SBDS
    BLVRBENSG00000090013.5291.53540140.453101.053505.733703.57720HepG2SBDS
    DNAJB11ENSG00000090520.61349.257801999.84660-0.567703.420101.69300HepG2SBDS
    LAMB1ENSG00000091136.97633.8551011322.65460-0.568703.756601.95440HepG2SBDS
    SLC26A3ENSG00000091138.8136.1363043.794201.636107.295204.92660HepG2SBDS
    ABCC6ENSG00000091262.101023.88490610.010900.747004.719102.73610HepG2SBDS
    SEL1L3ENSG00000091490.631.50420105.96360-1.750006.922404.59520HepG2SBDS
    EZRENSG00000092820.13971.267801408.24570-0.536002.970301.35600HepG2SBDS
    TGFB2ENSG00000092969.733.83170114.23440-1.755507.376304.99000HepG2SBDS
    IL11ENSG00000095752.287.36300187.05250-1.098304.963602.95100HepG2SBDS
    ITPR3ENSG00000096433.62230.396504184.30770-0.907705.227603.16650HepG2SBDS
    DSPENSG00000096696.919922.1793032303.28380-0.697305.433903.32780HepG2SBDS
    PCSK5ENSG00000099139.951.20370129.25980-1.336005.344803.26450HepG2SBDS
    TIMM13ENSG00000099800.3419.59050229.413300.870904.723502.73700HepG2SBDS
    TRMT2AENSG00000099899.10222.42390124.366300.838603.504601.75510HepG2SBDS
    MMP11ENSG00000099953.52501.943001575.379900.667203.907802.06160HepG2SBDS
    LGALS2ENSG00000100079.5149.3794070.350501.086203.586701.81910HepG2SBDS
    JOSD1ENSG00000100221.61026.126901557.79650-0.602303.687701.90110HepG2SBDS
    HIF1AENSG00000100644.122365.923203410.13880-0.527403.151801.49410HepG2SBDS
    SERPINA4ENSG00000100665.7761.98410497.726900.614303.331901.62680HepG2SBDS
    STK4ENSG00000101109.71147.463401795.87990-0.646204.201902.30900HepG2SBDS
    RNF24ENSG00000101236.12561.99310849.26600-0.595703.256201.56960HepG2SBDS
    CDS2ENSG00000101290.92875.419504195.37510-0.545003.405601.68630HepG2SBDS
    JAG1ENSG00000101384.72038.659303328.57600-0.707303.391701.67730HepG2SBDS
    LPIN2ENSG00000101577.53829.988905748.19670-0.585803.887102.04900HepG2SBDS
    MYOM1ENSG00000101605.884.20660160.93730-0.934503.490001.74880HepG2SBDS
    CEP76ENSG00000101624.6287.18320442.77380-0.624602.955701.34750HepG2SBDS
    MOSPD1ENSG00000101928.8314.61860602.78070-0.938006.377704.14260HepG2SBDS
    SYTL4ENSG00000102362.1120.0160072.11500-1.849105.622403.48430HepG2SBDS
    KLF5ENSG00000102554.9138.26390299.07450-1.113106.460704.21270HepG2SBDS
    RGCCENSG00000102760.12121.12480249.69740-1.043705.343103.26450HepG2SBDS
    DGKHENSG00000102780.1211.5348048.76360-2.079804.367002.43780HepG2SBDS
    NDRG4ENSG00000103034.10129.30320290.78290-1.169206.897104.57770HepG2SBDS
    ABCC1ENSG00000103222.141790.281302693.93160-0.589503.756201.95440HepG2SBDS
    QPRTENSG00000103485.132951.566201769.186400.738305.567703.43970HepG2SBDS
    HOMER2ENSG00000103942.8671.693801022.94760-0.606903.458701.72150HepG2SBDS
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    97 RBPs can affect the gene expression of SBDS :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    SBDSENSG00000126524.51510.17260977.079200.6281014.1454012.99830HepG2ACO1
    SBDSENSG00000126524.52990.977501691.052100.8226010.176309.22200HepG2AKAP1
    SBDSENSG00000126524.52178.383001391.387400.6466015.8162014.41160HepG2AUH
    SBDSENSG00000126524.52576.817502002.982200.363303.487402.82420HepG2BOP1
    SBDSENSG00000126524.52473.717501303.792400.923907.697406.50200HepG2CALR
    SBDSENSG00000126524.51369.765801838.85760-0.424903.810503.01600HepG2CPSF6
    SBDSENSG00000126524.51116.25700821.666800.441905.234903.83400HepG2YBX3
    SBDSENSG00000126524.51863.940701265.261800.5588010.453909.35990HepG2CELF1
    SBDSENSG00000126524.51018.32020822.832700.307402.617901.49260HepG2DDX1
    SBDSENSG00000126524.5577.51430804.12580-0.477603.947503.15080HepG2DDX21
    SBDSENSG00000126524.5980.42950786.758900.317402.296001.47270HepG2DDX24
    SBDSENSG00000126524.52501.855701620.009300.626907.029606.07410HepG2DDX3X
    SBDSENSG00000126524.51386.80700886.207300.646006.120105.02440HepG2DDX55
    SBDSENSG00000126524.51946.981001321.733800.558706.217304.76110HepG2DDX5
    SBDSENSG00000126524.51908.088201391.364200.455503.383402.70790HepG2DDX6
    SBDSENSG00000126524.51141.59370934.813100.288202.811602.12910HepG2DKC1
    SBDSENSG00000126524.51018.29960806.842800.335703.190702.44010HepG2DNAJC21
    SBDSENSG00000126524.5619.12900799.67800-0.369204.220703.44720HepG2DNAJC2
    SBDSENSG00000126524.51023.49850740.363900.467102.847401.72310HepG2AGO1
    SBDSENSG00000126524.51047.18830795.089700.397202.774301.87020HepG2EIF3D
    SBDSENSG00000126524.5957.78530759.273600.335002.586101.54300HepG2EIF3G
    SBDSENSG00000126524.51884.122201342.192700.489208.806207.47140HepG2EIF4G1
    SBDSENSG00000126524.5968.143701285.74520-0.409303.447602.54660HepG2EIF4G2
    SBDSENSG00000126524.52401.729601597.506700.5882014.3240013.12750HepG2ETF1
    SBDSENSG00000126524.5976.94630766.229800.350402.595301.48360HepG2FASTKD2
    SBDSENSG00000126524.52518.608401473.927900.772908.369407.11150HepG2FIP1L1
    SBDSENSG00000126524.51049.896001491.42940-0.506404.413003.55300HepG2FXR1
    SBDSENSG00000126524.52641.236702084.518100.341402.405801.80470HepG2GPKOW
    SBDSENSG00000126524.51512.778701250.337700.274802.851001.90450HepG2HNRNPA2B1
    SBDSENSG00000126524.51680.922401186.676200.502203.078401.67490HepG2ILF3
    SBDSENSG00000126524.5594.739201500.35940-1.3350017.9345016.44150HepG2MATR3
    SBDSENSG00000126524.5877.133801349.09970-0.621109.789808.38360HepG2NOL12
    SBDSENSG00000126524.52152.631601112.537800.952107.600606.07650HepG2PABPC1
    SBDSENSG00000126524.51064.103901306.44810-0.296003.218602.57330HepG2PCBP1
    SBDSENSG00000126524.51620.21220909.292900.833307.116705.52660HepG2PCBP2
    SBDSENSG00000126524.51586.549901091.588800.539402.944601.37500HepG2PNPT1
    SBDSENSG00000126524.5830.63740991.90940-0.256002.150801.46120HepG2PRPF4
    SBDSENSG00000126524.51072.32630683.818300.649006.495105.31500HepG2PRPF8
    SBDSENSG00000126524.5950.644901329.37410-0.483807.132806.33470HepG2PTBP1
    SBDSENSG00000126524.51711.713501287.814900.410404.050403.34420HepG2PUF60
    SBDSENSG00000126524.51746.474201367.050400.353304.968604.22100HepG2PUM1
    SBDSENSG00000126524.5837.00620995.22600-0.249802.310601.73490HepG2PUS1
    SBDSENSG00000126524.53403.77580877.520201.9555023.0796021.23920HepG2RAVER1
    SBDSENSG00000126524.52041.649101335.218400.6126012.0491011.12480HepG2RBM22
    SBDSENSG00000126524.51108.794101479.45390-0.416105.708504.97510HepG2NELFE
    SBDSENSG00000126524.51106.007401377.93180-0.317102.156401.60320HepG2RECQL
    SBDSENSG00000126524.52264.867401619.178100.484106.083805.12770HepG2RPLP0
    SBDSENSG00000126524.51196.30380861.934900.472802.518201.61440HepG2RPS10
    SBDSENSG00000126524.51179.89090676.455600.802508.632107.34810HepG2RRP9
    SBDSENSG00000126524.5484.982601161.10520-1.2595012.635009.62820HepG2SBDS
    SBDSENSG00000126524.52315.935801442.956300.682506.223005.18720HepG2SF3A3
    SBDSENSG00000126524.51198.535801969.02260-0.716209.086307.87890HepG2SF3B1
    SBDSENSG00000126524.51152.87030934.755500.302503.715102.98790HepG2SMN1
    SBDSENSG00000126524.53442.576501508.077201.1907066.3426064.72840HepG2SRFBP1
    SBDSENSG00000126524.52096.559801444.632300.5372011.6986010.86990HepG2SRSF1
    SBDSENSG00000126524.54188.350002118.626300.983202.804201.79540HepG2SRSF3
    SBDSENSG00000126524.51507.991401175.294400.359505.152604.44160HepG2SRSF9
    SBDSENSG00000126524.51640.640001309.363100.325304.474403.85340HepG2SSB
    SBDSENSG00000126524.51709.655901446.072100.241502.815902.19000HepG2SUCLG1
    SBDSENSG00000126524.52256.76030882.258201.3549025.7251024.04940HepG2SUPV3L1
    SBDSENSG00000126524.51278.405201938.86430-0.600907.377406.26910HepG2TARDBP
    SBDSENSG00000126524.51158.95990874.624700.406004.131303.54670HepG2TIAL1
    SBDSENSG00000126524.51671.593301261.190500.406302.565101.95790HepG2U2AF1
    SBDSENSG00000126524.54078.503702238.125200.865602.562901.61450HepG2U2AF2
    SBDSENSG00000126524.51929.645801331.660400.535004.457703.37760HepG2UBE2L3
    SBDSENSG00000126524.5783.57490521.212900.588105.197304.14850HepG2UCHL5
    SBDSENSG00000126524.51780.976901235.482600.5275010.361409.31920HepG2UTP3
    SBDSENSG00000126524.51428.13520965.009700.565403.723202.49090HepG2XRCC6
    SBDSENSG00000126524.51279.05180978.884700.385805.630804.72440HepG2ZC3H8
    SBDSENSG00000126524.52059.450001407.405000.5491015.1176014.09410HepG2ZNF622
    SBDSENSG00000126524.53031.177902343.142200.371303.239701.94910K562AARS
    SBDSENSG00000126524.54308.675503551.441900.278704.807804.09440K562AGGF1
    SBDSENSG00000126524.52708.403103902.50800-0.527007.181005.41230K562AKAP8
    SBDSENSG00000126524.54522.766003695.438800.291402.759502.10690K562AKAP8L
    SBDSENSG00000126524.56559.298804329.407600.599309.715408.72040K562AQR
    SBDSENSG00000126524.54433.290903877.409600.193202.086701.30300K562ATP5C1
    SBDSENSG00000126524.51962.522102339.77450-0.253703.414402.34360K562BCLAF1
    SBDSENSG00000126524.54161.319105051.02880-0.279504.107602.74190K562CPEB4
    SBDSENSG00000126524.57674.161605225.937300.5542017.8469016.32050K562DDX47
    SBDSENSG00000126524.54781.630003976.541100.265903.729902.69210K562DKC1
    SBDSENSG00000126524.51803.792101254.810300.523505.597703.67670K562DNAJC21
    SBDSENSG00000126524.52442.842603513.17470-0.524205.342404.39080K562EIF2S2
    SBDSENSG00000126524.51982.179301186.938700.739702.253101.35650K562EIF3A
    SBDSENSG00000126524.54811.741005595.70420-0.217802.546901.64100K562EIF4G2
    SBDSENSG00000126524.52826.117002038.992400.470909.095008.07170K562FXR1
    SBDSENSG00000126524.53548.482202329.631400.607004.990003.97570K562G3BP2
    SBDSENSG00000126524.51938.964302564.64120-0.403503.683503.00770K562HNRNPC
    SBDSENSG00000126524.53383.506102456.495800.461804.657803.01770K562HNRNPK
    SBDSENSG00000126524.55026.839703234.722600.635902.794101.86010K562HNRNPM
    SBDSENSG00000126524.51706.844201219.048300.485504.212402.36930K562ILF3
    SBDSENSG00000126524.55191.131003921.775400.404404.823503.67790K562KIF1C
    SBDSENSG00000126524.51665.854102579.55470-0.6309010.556908.64240K562MATR3
    SBDSENSG00000126524.54369.739603079.442200.504802.535101.69890K562NAA15
    SBDSENSG00000126524.53471.144903963.04650-0.191203.647002.80300K562NSUN2
    SBDSENSG00000126524.53146.449801837.397600.7760012.7152011.09670K562PRPF8
    SBDSENSG00000126524.51674.019702299.37480-0.457904.716803.49210K562PSIP1
    SBDSENSG00000126524.57870.045906105.381900.366202.350601.59850K562PUF60
    SBDSENSG00000126524.58277.302606493.704100.350004.396303.02460K562PUM1
    SBDSENSG00000126524.55992.035403664.843600.7092011.4407010.38470K562PUS1
    SBDSENSG00000126524.54925.864303570.852600.464008.387807.38190K562RBM15
    SBDSENSG00000126524.53319.828101871.707500.8267011.607509.91170K562RPS19
    SBDSENSG00000126524.5876.532605393.50620-2.6213054.3012049.89850K562SBDS
    SBDSENSG00000126524.53046.941104006.40380-0.3949010.467508.77860K562SRPK2
    SBDSENSG00000126524.52943.257002461.683600.257702.388501.72330K562SRSF1
    SBDSENSG00000126524.53020.565402517.298900.262802.596101.80350K562SYNCRIP
    SBDSENSG00000126524.51905.268402491.54640-0.387003.469502.67380K562TARDBP
    SBDSENSG00000126524.51956.218902403.33530-0.297002.939402.09270K562TIA1
    SBDSENSG00000126524.51717.786402349.10330-0.451604.930903.57980K562TRIM56
    SBDSENSG00000126524.53157.242302258.654300.483104.071502.69100K562U2AF1
    SBDSENSG00000126524.53009.481202332.539800.367504.717203.67440K562U2AF2
    SBDSENSG00000126524.53078.789804202.10200-0.4487011.4225010.08780K562UPF1
    SBDSENSG00000126524.54442.363603739.011300.248604.461503.40580K562WDR43
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    746 alternative splicing events after Knockdown/Knockout SBDS protein :

    Only display 100 entries as example. Please click "View All" button to see all 746 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SENOA1ENSG00000084092.6chr4-5783278557832902578305715783069257834549578346810.108000.000560.09305includedK562SBDS
    SELUC7L3ENSG00000108848.11chr17+4882865748828723488281124882821348829560488299460.336000.000010.00726includedK562SBDS
    SEITFG2ENSG00000111203.7chr12+2936943293705029332552933418293938229397700.516000.000320.06532includedK562SBDS
    SENSUN6ENSG00000241058.1chr10-1893249718932569189314041893148418937418189375740.116000.000000.00000includedK562SBDS
    SEMYL6ENSG00000092841.14chr12+5655440956554454565540265655410456555170565553580.077000.000560.09305includedK562SBDS
    SESTX12ENSG00000117758.9chr1+2813850228138571281367562813680028138673281387790.057000.000040.01638includedK562SBDS
    SETRMT1LENSG00000121486.7chr1-1850929881850930511850895141850896411850940751850942420.056000.000010.00616includedK562SBDS
    SEMTIF2ENSG00000085760.10chr2-5549351655493654554908935549100155494704554947710.069000.000440.07848includedK562SBDS
    SEALDOAENSG00000149925.12chr16+3007714530077248300757543007582630078554300786870.111000.000010.00625includedK562SBDS
    SERPEENSG00000197713.10chr2+2108809272108809812108806962108808362108812302108813650.106000.000000.00088includedK562SBDS
    SELRCH3ENSG00000186001.8chr3+1975588301975589271975576401975577341975590671975591880.149000.000650.09904includedK562SBDS
    SEZNF207ENSG00000010244.12chr17+3069368330693776306923483069250630694790306949620.133000.000280.06023includedK562SBDS
    SEASB3ENSG00000270898.1chr2-5397541753975504539565945395670753977919539780780.126000.000520.08893includedK562SBDS
    SEUAP1ENSG00000117143.9chr1+1625625211625625721625601121625603011625675811625676480.086000.000000.00008includedK562SBDS
    SEDLGAP5ENSG00000126787.8chr14-5561531155615402556148295561519155617516556175660.105000.000000.00017includedK562SBDS
    SEMAP4ENSG00000047849.17chr3-4801935448019423479697174796984048040127480403690.074000.000100.03034includedK562SBDS
    SERNASEK-C17orf49ENSG00000161939.14chr17+6916637691683569159536916080691698469170610.056000.000110.03327includedK562SBDS
    SEYME1L1ENSG00000136758.14chr10-2743131527431414274252042742531427434356274345190.081000.000140.03938includedK562SBDS
    SESREK1ENSG00000153914.11chr5+6545463665454760654492906544942465455046654551620.111000.000010.00404includedK562SBDS
    SEEXO1ENSG00000174371.12chr1+2420298862420300332420247072420248042420301312420303570.058000.000340.06719includedK562SBDS
    SEWNK1ENSG00000060237.12chr12+9770319782709712489714369804309805140.138000.000020.00944includedK562SBDS
    SEWNK1ENSG00000060237.12chr12+9898869901659873779875279908579909550.065000.000000.00217includedK562SBDS
    SEHIST1H4HENSG00000158406.2chr6-2628489626285067262812822628181526285261262857620.051000.000390.07359includedK562SBDS
    SEAKAP11ENSG00000023516.7chr13+4288718242887266428825894288274542888029428880760.098000.000270.05981includedK562SBDS
    SESMC6ENSG00000163029.11chr2-1793424417934331179270931792721817934892179350400.150000.000010.00548includedK562SBDS
    SECTC-338M12.9ENSG00000248103.1chr5+1807101571807102431807083751807086131807103421807106530.160000.000000.00017includedK562SBDS
    SEARNTENSG00000143437.16chr1-1507903951507905061507898361507899091507956691507958210.070000.000040.01659includedK562SBDS
    SEAC005307.3ENSG00000267243.1chr19-2894475028944842289285472892862528957308289576870.052000.000000.00004includedK562SBDS
    SEFIP1L1ENSG00000145216.11chr4+5425759654257665542571755425730654265896542660060.130000.000280.06023includedK562SBDS
    SEFGF13ENSG00000129682.9chrX-1379396731379398411377909791377910901382862201382864330.245000.000020.00884includedK562SBDS
    SEMRRFENSG00000148187.13chr9+1250483171250484451250474471250475661250540271250540770.256000.000000.00029includedK562SBDS
    SEHDHD2ENSG00000167220.7chr18-4467541944675479446627094466282044676748446768500.258000.000150.04065includedK562SBDS
    SETATDN2ENSG00000157014.6chr3+1032034710320444103199621032014610320568103207180.206000.000460.08090includedK562SBDS
    SESMAP1ENSG00000112305.10chr6+7150139171501472714830527148312871508359715084400.251000.000010.00404includedK562SBDS
    SECCNL2ENSG00000221978.7chr1-1326676132695513261451326245132805813280960.452000.000620.09876includedK562SBDS
    SEMYBENSG00000118513.14chr6+1355180981355184611355168851355171401355200451355201880.054000.000000.00324includedK562SBDS
    SEATP5SLENSG00000105341.14chr19-4193917641939339419372434193831341939441419395780.161000.000280.06023includedK562SBDS
    SEUBQLN1ENSG00000135018.9chr9-8628126486281309862799448628006086284099862842210.104000.000020.01113includedK562SBDS
    SEHNRNPDENSG00000138668.14chr4-8327604783276154832749868327530783276456832765540.062000.000000.00000includedK562SBDS
    SERAD51AP1ENSG00000111247.10chr12+4665518466566846621484662313466802246692130.207000.000180.04501includedK562SBDS
    SEHSD17B7ENSG00000132196.9chr1+1627726211627727391627695321627697271627732201627733250.146000.000150.04065includedK562SBDS
    SETMEM161B-AS1ENSG00000247828.3chr5+8756528487565504875648608756493687566342875664020.089000.000180.04501includedK562SBDS
    SEAXIN1ENSG00000103126.10chr16-3411893412973394393396073434873437180.068000.000110.03327includedK562SBDS
    SESNHG16ENSG00000163597.10chr17+7455502674555125745538737455393974557369745574800.155000.000040.01599includedK562SBDS
    SEFCGR2AENSG00000143226.9chr1+1614806231614807461614796091614798641614836841614837220.127000.000420.07622includedK562SBDS
    SEAUHENSG00000148090.7chr9-9412265294122722941183699411843794123909941241690.089000.000660.09907includedK562SBDS
    SEZKSCAN8ENSG00000198315.6chr6+2812003828120172281196392811971428120833281218510.114000.000020.01049includedK562SBDS
    SEDMXL1ENSG00000172869.10chr5+1185142691185143831185136901185139391185254021185255810.104000.000200.04777includedK562SBDS
    SEMAPK3ENSG00000102882.7chr16-3012847430128606301282713012832430128990301291050.088000.000280.06023includedK562SBDS
    SERABGAP1LENSG00000152061.17chr1+1742446171742447191742415511742416181742449701742450730.258000.000560.09312includedK562SBDS
    SEHNRNPDLENSG00000152795.13chr4-8334671583346820833457818334603683347189833473730.056000.000160.04312includedK562SBDS
    SEDFFBENSG00000169598.11chr1+3782847378296237823753782564378453737846170.476000.000310.06491includedK562SBDS
    SECOPG2ENSG00000158623.10chr7-1303377081303377881303018601303019361303478061303478780.060000.000020.01035includedK562SBDS
    SECYB5R4ENSG00000065615.9chr6+8463585484636050846341888463431184644313846444540.103000.000010.00433includedK562SBDS
    SEGTPBP1ENSG00000100226.11chr22+3913117839131315391303283913040239132033391321800.326000.000150.04015includedK562SBDS
    SEAC005154.6ENSG00000196295.7chr7-3062432630624424306188463061893030624945306250950.137000.000600.09719includedK562SBDS
    SER3HDM4ENSG00000198858.5chr19-9014219015469008199009529019759021300.105000.000220.05118includedK562SBDS
    SESLC50A1ENSG00000169241.13chr1+1551100361551101981551087741551088521551104541551105740.155000.000090.02768includedK562SBDS
    SEPIEZO1ENSG00000103335.15chr16-8878372488783821887834308878361988783944887840230.082000.000530.09082includedK562SBDS
    SEDDX27ENSG00000124228.10chr20+4784755947847652478467354784688647849842478499420.096000.000000.00257includedK562SBDS
    SEBTN2A1ENSG00000112763.11chr6+2645883426458946264581952645837026459708264600560.245000.000330.06604includedK562SBDS
    SENDUFAF5ENSG00000101247.13chr20+1378246313782519137821881378232913789487137895480.296000.000180.04442includedK562SBDS
    SEPANK2ENSG00000125779.17chr20+3889318388955238885723888782389122338914770.167000.000640.09878includedK562SBDS
    SEZCCHC9ENSG00000131732.7chr5+8060055980600960805974428059748980604379806045300.101000.000100.02997includedK562SBDS
    SEPOLBENSG00000070501.7chr8+4219652942196587421961224219620342202470422025370.194000.000330.06532includedK562SBDS
    SEZNF548ENSG00000188785.7chr19+5790416857904316579013325790148257905555579055910.340000.000220.05118includedK562SBDS
    SEBCL2L13ENSG00000099968.13chr22+1817890618178976181717511817190818209442182114870.318000.000010.00616includedK562SBDS
    SEZNF449ENSG00000173275.8chrX+1344826781344827621344809431344813971344830341344832390.218000.000430.07741includedK562SBDS
    SERFC5ENSG00000111445.9chr12+1184554941184556201184545051184546971184557991184558580.222000.000630.09876includedK562SBDS
    SEHNRNPH3ENSG00000096746.13chr10+7009825970098426700969557009709070098896700989830.120000.000000.00237includedK562SBDS
    SEMKNK1ENSG00000079277.15chr1-4705154547051646470488994704900147051905470519310.578000.000050.01662includedK562SBDS
    SESETD8ENSG00000183955.8chr12+1238891851238892981238881191238881791238894301238896210.058000.000000.00075includedK562SBDS
    SETRNAU1APENSG00000180098.5chr1+2888762428887772288871442888724428887857288879100.054000.000220.05118includedK562SBDS
    SERBM39ENSG00000131051.16chr20-3431738334317473343172333431728734319862343200570.056000.000560.09305includedK562SBDS
    SEIP6K2ENSG00000068745.10chr3-4875282148752960487314834873285148754589487546470.168000.000170.04442includedK562SBDS
    SETARS2ENSG00000143374.10chr1+1504689571504691041504646601504649651504692851504693840.109000.000060.01944includedK562SBDS
    SESFPQENSG00000116560.6chr1-3564291935643000356419783564207535643589356436370.078000.000180.04452includedK562SBDS
    SEC4orf36ENSG00000163633.6chr4-8785337387853471878473798784747887854546878546940.276000.000250.05625includedK562SBDS
    SENSUN2ENSG00000037474.10chr5-6605399660552166047176604798660693266070250.090000.000640.09890includedK562SBDS
    SECAMK2GENSG00000148660.16chr10-7557928975579403755772367557731275581439755814880.194000.000100.03172includedK562SBDS
    SESRRM1ENSG00000133226.12chr1+2497356924973699249731172497328024975349249755200.189000.000000.00000includedK562SBDS
    SEPIAS2ENSG00000078043.11chr18-4448348944483598444705424447101744497284444973830.333000.000170.04442includedK562SBDS
    SEC4orf29ENSG00000164074.10chr4+1289228701289229151289054931289055781289300741289301530.228000.000370.07159includedK562SBDS
    SECLPPENSG00000125656.4chr19+6364462636464263624566362553636626863663740.106000.000130.03708includedK562SBDS
    SEBECN1ENSG00000126581.8chr17-4096367240963815409624314096294640965965409660260.103000.000600.09719includedK562SBDS
    SETARBP1ENSG00000059588.5chr1-2345341272345342992345293912345295832345369262345370080.209000.000200.04777includedK562SBDS
    SEPDK1ENSG00000152256.9chr2+1734274681734275281734269471734270191734292301734294150.089000.000210.04972includedK562SBDS
    SEFBXO44ENSG00000132879.9chr1+1171858911718685117183231171842111718792117189280.357000.000020.00944includedK562SBDS
    SECENPJENSG00000151849.10chr13-2545884025458931254584602545860125459413254595240.075000.000370.07211includedK562SBDS
    SEKIF9ENSG00000088727.8chr3-4732244147322685473187714731886947323984473243370.088000.000190.04619includedK562SBDS
    SEPTPRCENSG00000081237.14chr1+1986715151986716591986614751986615021986724261986725010.189000.000000.00156includedK562SBDS
    SEPARLENSG00000175193.8chr3-1835515111835516131835512791835513771835583571835584280.208000.000000.00324includedK562SBDS
    SESPIDRENSG00000164808.12chr8+4824336848243484482036214820372648308935483091860.457000.000020.01085includedK562SBDS
    SETROVE2ENSG00000116747.8chr1+1930290031930293521930287881930289061930381631930387640.223000.000620.09876includedK562SBDS
    SERNF216ENSG00000011275.14chr7-5781378578144657812095781275579247657926100.317000.000000.00156includedK562SBDS
    SECOPS8ENSG00000198612.6chr2+2379961062379962062379957692379958402379972472379972960.056000.000420.07654includedK562SBDS
    SESRSF1ENSG00000136450.8chr17-5608277456082961560819485608240256083161560833340.097000.000130.03692includedK562SBDS
    SEPIK3C3ENSG00000078142.7chr18+3956490839565071395502903955042039567775395678390.166000.000050.01859includedK562SBDS
    SEAC004381.6ENSG00000005189.15chr16+2085637520856563208559502085616720857542208576610.069000.000030.01115includedK562SBDS
    SERPS24ENSG00000138326.14chr10+7979996179799983797969517979706279800372798004550.100000.000000.00000includedK562SBDS





    2 RBPs can affect the splicing of SBDS :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    A3SSSBDSENSG00000126524.5chr7-6645616266456389664561626645628866458203664584040.115000.000000.00000longerK562AQR
    A3SSSBDSENSG00000126524.5chr7-6645920666459440664592066645932866460276664605530.100000.000000.00000longerK562AQR
    MXESBDSENSG00000126524.5chr7-66458203664584046645919866459328664561236645628866460276664605880.141000.000010.005721includedK562HNRNPM

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein SBDS and its RNA.