COPG2

General Information

Gene Name       : COPG2
Gene ID             : ENSG00000158623.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: COPG2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COPG2ENSG00000158623.1424.2420.1722.20ENCSR000AEF
HepG2COPG2ENSG00000158623.1412.6317.2414.93ENCSR985KAT
K562COPG2ENSG00000158623.1437.9336.6037.27ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COPG2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • COPG2 RNA is bound by 10 proteins.  







eCLIP assay for COPG2 is not avaliable on ENCORE database.





10 proteins are bound to COPG2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7130146108130146151-3'-UTR,intron-Distal4.213144.48843K562TIA1
chr7130146236130146253-3'-UTR,intron-Distal3.115893.69775K562YBX3
chr7130146240130146315-3'-UTR,intron-Distal3.9733214.67311K562TIA1
chr7130146268130146321-3'-UTR,intron-Distal3.542299.41693K562DDX55
chr7130146109130146156-3'-UTR,intron-Distal3.589984.54145K562DDX6
chr7130146112130146159-3'-UTR,intron-Distal3.510277.91425K562FAM120A
chr7130146266130146320-3'-UTR,intron-Distal3.564917.63427HepG2SUB1
chr7130146265130146319-3'-UTR,intron-Distal3.340425.71161K562APOBEC3C
chr7130146108130146159-3'-UTR,intron-Distal3.567423.30889K562GTF2F1
chr7130353484130353564-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.5634013.88534K562DDX3X
chr7130147149130147197-CDS,intron-Distal3.9239213.18786K562YBX3
chr7130295863130295883-CDS,intron-Distal4.4513512.40060K562YBX3
chr7130295917130295975-CDS,intron-Distal3.239355.04943K562ZNF622
chr7130337712130337785-CDS,intron-Distal4.199267.86788K562YBX3
chr7130295883130295908-CDS,intron-Distal4.6130613.47097K562YBX3
chr7130147199130147213-CDS,intron-Distal4.453779.97324K562YBX3
chr7130147525130147544-CDS,intron-Distal,intron-Proximal3.658505.10442K562YBX3
chr7130295915130295940-CDS,intron-Distal3.621206.16886K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COPG2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COPG2 is not available on ENCORE database.

  • 75 RBPs can affect the levels of COPG2.  








The Knockdown/knockout RNA-Seq assay for COPG2 is not available on ENCORE database.





75 RBPs can affect the gene expression of COPG2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COPG2ENSG00000158623.10645.85190369.830400.804206.080305.32650HepG2AKAP1
COPG2ENSG00000158623.10130.10870219.99170-0.757703.424002.42720HepG2BCLAF1
COPG2ENSG00000158623.1094.55400160.39260-0.762403.276801.94400HepG2BUD13
COPG2ENSG00000158623.10106.44890166.75770-0.647602.227301.60240HepG2CPSF6
COPG2ENSG00000158623.1084.29660176.29310-1.064405.432303.92060HepG2CPSF7
COPG2ENSG00000158623.10198.26450338.30900-0.770905.981405.10480HepG2CELF1
COPG2ENSG00000158623.10253.77000354.29910-0.481402.190501.62680HepG2DDX3X
COPG2ENSG00000158623.10197.00420304.28070-0.627202.950602.31510HepG2DDX6
COPG2ENSG00000158623.10119.43180196.29250-0.716804.165903.39720HepG2DNAJC2
COPG2ENSG00000158623.10137.84920292.58140-1.085707.065206.14930HepG2EIF2S1
COPG2ENSG00000158623.10129.69880323.37020-1.3180010.522409.29700HepG2EIF4A3
COPG2ENSG00000158623.10173.71990314.78260-0.857604.219903.37970HepG2EIF4B
COPG2ENSG00000158623.10218.91720343.76910-0.651103.813102.86690HepG2EIF4G2
COPG2ENSG00000158623.10158.67460263.89630-0.733903.357902.12620HepG2FUS
COPG2ENSG00000158623.10163.27120302.61990-0.890205.480104.55720HepG2G3BP1
COPG2ENSG00000158623.10107.68900189.04230-0.811803.244002.55560HepG2GPKOW
COPG2ENSG00000158623.1093.63040184.06600-0.975204.372202.61800HepG2HNRNPA0
COPG2ENSG00000158623.10161.14380240.29280-0.576403.542102.73870HepG2HNRNPF
COPG2ENSG00000158623.10193.94080331.30980-0.772606.472105.48300HepG2HNRNPL
COPG2ENSG00000158623.10154.52840236.61530-0.614703.196202.42250HepG2IGF2BP1
COPG2ENSG00000158623.10169.72140307.62550-0.858005.199704.30070HepG2IGF2BP2
COPG2ENSG00000158623.10115.36020225.66690-0.968007.297906.16740HepG2ILF2
COPG2ENSG00000158623.10154.75640326.27950-1.076107.750806.66870HepG2MAGOH
COPG2ENSG00000158623.1083.97590328.12200-1.9662018.3860016.87560HepG2MATR3
COPG2ENSG00000158623.10198.54170335.86450-0.758404.354003.56690HepG2NCBP2
COPG2ENSG00000158623.10120.78600198.88470-0.719502.486701.65420HepG2PABPC1
COPG2ENSG00000158623.10152.14190218.67730-0.523402.476901.67120HepG2PARN
COPG2ENSG00000158623.10173.69170298.42430-0.780805.906305.07270HepG2PCBP1
COPG2ENSG00000158623.10151.88340249.81570-0.717903.164202.05450HepG2PCBP2
COPG2ENSG00000158623.10110.89190197.04690-0.829404.745403.80630HepG2PPIL4
COPG2ENSG00000158623.10104.98980192.00780-0.870903.871502.93570HepG2PRPF8
COPG2ENSG00000158623.10234.73600344.30150-0.552603.025302.40720HepG2PUF60
COPG2ENSG00000158623.10244.53850365.50520-0.579804.423903.71290HepG2PUM1
COPG2ENSG00000158623.10275.61730365.22950-0.406102.014601.43630HepG2PUM2
COPG2ENSG00000158623.10169.57670230.68920-0.444002.140501.58180HepG2PUS1
COPG2ENSG00000158623.10447.34530328.863400.443802.800602.17260HepG2QKI
COPG2ENSG00000158623.10128.40850258.92180-1.011807.198506.17220HepG2RPLP0
COPG2ENSG00000158623.10147.42360262.28260-0.831203.740301.95690HepG2RTF1
COPG2ENSG00000158623.10231.02410316.14300-0.452502.401201.84460HepG2SF3B4
COPG2ENSG00000158623.10127.71110198.69010-0.637602.035001.36950HepG2SNRNP70
COPG2ENSG00000158623.10431.54630329.988800.387002.292301.85100HepG2SRSF1
COPG2ENSG00000158623.10206.94400339.96440-0.716105.485704.64770HepG2SRSF5
COPG2ENSG00000158623.10164.21990236.09530-0.523703.000902.28050HepG2SRSF7
COPG2ENSG00000158623.10136.16960268.46680-0.979308.049607.19560HepG2SRSF9
COPG2ENSG00000158623.10127.36030225.29160-0.822902.916601.67960HepG2SUB1
COPG2ENSG00000158623.1092.23120145.95840-0.662202.609901.69620HepG2SUPT6H
COPG2ENSG00000158623.1072.60720214.66920-1.5639012.8006011.86070HepG2TIAL1
COPG2ENSG00000158623.10108.90010216.58830-0.992007.062606.23360HepG2TRIM56
COPG2ENSG00000158623.10215.94980336.39090-0.639403.769802.73540HepG2TUFM
COPG2ENSG00000158623.10218.83400356.07950-0.702403.240202.33570HepG2UBE2L3
COPG2ENSG00000158623.1080.91870146.38380-0.855203.533002.67890HepG2UCHL5
COPG2ENSG00000158623.1095.03940172.08890-0.856604.735804.06900HepG2ZNF622
COPG2ENSG00000158623.101147.12500845.783200.439605.890905.11200K562AGGF1
COPG2ENSG00000158623.10691.390201217.85160-0.816809.993508.98400K562AQR
COPG2ENSG00000158623.10290.58830390.36940-0.425902.330101.60400K562CPSF6
COPG2ENSG00000158623.10403.94080678.47430-0.748207.024105.51700K562EFTUD2
COPG2ENSG00000158623.10171.13030278.10320-0.700502.652001.67250K562EIF3A
COPG2ENSG00000158623.10445.02740844.47850-0.9242012.4378010.65360K562EIF4A3
COPG2ENSG00000158623.10475.18260646.16600-0.443403.881902.26390K562FUS
COPG2ENSG00000158623.10664.05480878.22530-0.403303.902703.20230K562FXR1
COPG2ENSG00000158623.10243.01230372.70700-0.617003.906402.96880K562GPKOW
COPG2ENSG00000158623.10740.14230944.07880-0.351102.549901.82190K562GRSF1
COPG2ENSG00000158623.10269.96230555.81570-1.0418011.8042010.64500K562HNRNPC
COPG2ENSG00000158623.10915.69900694.160500.399502.890202.07780K562HSPD1
COPG2ENSG00000158623.10787.702901113.32630-0.499205.220504.05750K562MAGOH
COPG2ENSG00000158623.10794.474101111.08530-0.483904.208003.05110K562MATR3
COPG2ENSG00000158623.101022.540601374.91720-0.427203.536602.25860K562MSI2
COPG2ENSG00000158623.10669.42920990.60580-0.565405.799204.37120K562PCBP2
COPG2ENSG00000158623.10354.76560584.12770-0.719405.550804.36810K562PCBP3
COPG2ENSG00000158623.10252.72430448.07340-0.826207.186105.90800K562POLR2G
COPG2ENSG00000158623.10391.72720660.23370-0.753106.649605.48600K562PRPF8
COPG2ENSG00000158623.10343.99140498.32890-0.534703.391202.37510K562PSIP1
COPG2ENSG00000158623.10802.217301081.65750-0.431204.285503.47580K562PTBP1
COPG2ENSG00000158623.10993.070701407.38930-0.503104.790803.71980K562PUF60
COPG2ENSG00000158623.101102.66550872.758000.337202.345501.83720K562PUS1
COPG2ENSG00000158623.10717.057501037.24370-0.532605.202904.00790K562RBM22
COPG2ENSG00000158623.10329.45010454.57320-0.464502.809101.81050K562RCC2
COPG2ENSG00000158623.10478.22390672.51740-0.491902.985002.13600K562RPS19
COPG2ENSG00000158623.10689.72840962.82770-0.481205.018403.84920K562SF3B4
COPG2ENSG00000158623.10276.62440430.93230-0.639504.185802.84870K562SRFBP1
COPG2ENSG00000158623.10667.336101060.37200-0.668108.542207.30420K562SRSF1
COPG2ENSG00000158623.10332.82500474.73690-0.512403.255402.09670K562SRSF4
COPG2ENSG00000158623.10408.57280639.24010-0.645804.714503.35900K562SUPV3L1
COPG2ENSG00000158623.10715.824401073.19370-0.584205.730104.68980K562TARDBP
COPG2ENSG00000158623.10307.24570479.31960-0.641603.977202.84160K562TIAL1
COPG2ENSG00000158623.10681.86280897.59560-0.396602.397801.39000K562U2AF1
COPG2ENSG00000158623.10440.64710676.56130-0.618604.912703.51540K562UCHL5
COPG2ENSG00000158623.10570.54090705.22790-0.305802.333801.67090K562UPF1
COPG2ENSG00000158623.101117.331201442.95930-0.369003.418001.97370K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COPG2 is not available on ENCORE database.





1 RBPs can affect the splicing of COPG2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECOPG2ENSG00000158623.10chr7-1303377081303377881303018601303019361303478061303478780.060000.000020.01035includedK562SBDS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for COPG2 is not avaliable on ENCORE database.