GTF2F1

General Information

Gene Name       : GTF2F1
Gene ID             : ENSG00000125651.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GTF2F1)


Antibody Validation

 View validation images for all GTF2F1 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GTF2F1ENSG00000125651.1318.6836.1227.40ENCSR000AEF
HepG2GTF2F1ENSG00000125651.1358.5831.1544.86ENCSR985KAT
K562GTF2F1ENSG00000125651.1362.0846.0054.04ENCSR000AEO

Assays

4 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 342ENCSR736AAGGTF2F1K562ReleasedENCAB108WPNENCSR157BRV  
eCLIPeCLIP: 384ENCSR265ZISGTF2F1HepG2ReleasedENCAB108WPNENCSR451HMR  
knockdown followed by RNA-seq GTF2F1-BGKLV13-K562ENCSR188IPOGTF2F1K562ReleasedENCSR815CVQ   shRNAKD% = 86.0,88.6
knockdown followed by RNA-seq GTF2F1-BGHLV14-HepG2ENCSR295XKCGTF2F1HepG2ReleasedENCSR491FOC   shRNAKD% = 90.3,85.4






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
GTF2F1342K562ENCSR736AAGENCSR157BRVENCAB108WPNGTX11445540723ReleasedENCODE3
GTF2F1384HepG2ENCSR265ZISENCSR451HMRENCAB108WPNGTX11445540723ReleasedENCODE3


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
GTF2F1ENCAB108WPNGTX11445540723Released, ENCODE3Released, ENCODE3BGHLV14-23, Released, ENCODE3BGKLV13_39, Released, ENCODE3
GTF2F1ENCAB576INMPA5-30050TL2692997AReleased, ENCODE4BGHLV14-23, Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
GTF2F1K562shRNAENCSR188IPOENCSR815CVQGTF2F1_BGKLV13_39,GTF2F1_BGKLV13_40NT_BGKLV13_1,NT_BGKLV13_286.0,88.6ReleasedENCODE3
GTF2F1HepG2shRNAENCSR295XKCENCSR491FOCGTF2F1_BGHLV14-23,GTF2F1_BGHLV14-24NT_BGHLV14-1,NT_BGHLV14-290.3,85.4ReleasedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
GTF2F1Product_ID: GTX114455
Lot_ID: 40723
Source: GeneTex
Target Name: GTF2F1-human		 HepG2_Genetex_GTX114455_40723_GTF2F1.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using GTF2F1 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-GTF2F1 antibody (lanes under 'GTF2F1').
 GTF2F1_Secondary_Western.png<br>Caption: Western blot following shRNA against GTF2F1 in K562 and HepG2 whole cell lysate using GTF2F1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against GTF2F1. Lanes 5-8 follow the same pattern, but in HepG2. GTF2F1 protein appears as the green band, Tubulin serves as a control and appears in red.
 K562_Genetex_GTX114455_40723_GTF2F1.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using GTF2F1 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-GTF2F1 antibody (lanes under 'GTF2F1').
 GTF2F1_Secondary_Western.png<br>Caption: Western blot following shRNA against GTF2F1 in K562 and HepG2 whole cell lysate using GTF2F1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against GTF2F1. Lanes 5-8 follow the same pattern, but in HepG2. GTF2F1 protein appears as the green band, Tubulin serves as a control and appears in red.
GTF2F1Product_ID: PA5-30050
Lot_ID: TL2692997A
Source: Thermo Fisher
Target Name: GTF2F1-human		 GTF2F1-HEPG2-PA5-30050.png<br>Caption: Western blot following shRNA against GTF2F1 in HepG2 whole cell lysate using GTF2F1 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNA against GTF2F1. GTF2F1 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
 ThermoFisher_PA5-30050_TL2692997A_GTF2F1.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the GTF2F1 specific antibody, PA5-30050. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the GTF2F1-specific antibody, PA5-30050. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.








RNA Targets
  • GTF2F1 protein binds to 9,437 RNA regions.  





Proteins bound to RNA
  • GTF2F1 RNA is bound by 22 proteins.  






GTF2F1 protein has 9,437 RNA targets:

Only display 100 entries as example. Please click "View All" button to see all 9,437 entries.     

RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
GTF2F1chr7150671595150671701-4.652385.24810K562KCNH2intron-Distal,intron-Proximal
GTF2F1chr4185598499185598557+5.220229.43009K562PRIMPOLintron-Distal
GTF2F1chr193428731234287357+3.901804.47557HepG2KCTD155'-UTR,intron-Distal
GTF2F1chr11394563394611+3.263573.04054K562PKP3intron-Proximal
GTF2F1chr6159048843159048934+3.274249.84479HepG2TMEM181, AL591025.1intron-Distal
GTF2F1chr8144677712144677765-3.489166.66573HepG2EEF1Dintron-Distal
GTF2F1chr161126614311266238+4.3794612.12949HepG2CLEC16Aintron-Distal
GTF2F1chr77662674576626925+5.656875.54520K562DTX2P1, DTX2P1-UPK3BP1-PMS2P11, UPK3Bintron-Distal
GTF2F1chr1156341757156341833+3.5206610.21421HepG2RHBGintron-Distal
GTF2F1chr113291563432915668+3.763383.01994HepG2QSER1intron-Distal
GTF2F1chr12109124636109124714-4.831416.40009HepG2CORO1Cintron-Distal,intron-Proximal
GTF2F1chr171542733115427386-4.775174.97583HepG2TVP23C-CDRT4, TVP23Cintron-Distal
GTF2F1chr14105626493105626554-4.841634.65580K562RP11-44N21.4, JAG2intron-Distal
GTF2F1chr166720000967200086+5.1623310.40873K562HSF4intron-Distal,intron-Proximal
GTF2F1chr211108533811085435-6.3185318.92380K562BAGE2intron-Distal
GTF2F1chr5179049852179049949-3.8362521.44538K562HNRNPH1intron-Distal,intron-Proximal
GTF2F1chr224999081349990911-5.9176324.15242K562C22orf34intron-Distal
GTF2F1chr419532511953356+4.913167.26171HepG2WHSC1intron-Distal
GTF2F1chr156692463866924736+4.700816.63735K562RP11-321F6.1intron-Distal
GTF2F1chr12193166221931712-3.565163.06644K562RAP1GAPintron-Distal
GTF2F1chr178010606580106182-4.810135.63094K562CCDC57intron-Distal
GTF2F1chr9136132828136132880-3.9914115.27243K562ABOintron-Distal
GTF2F1chr11264487812644953-6.1132616.88545K562DHRS3intron-Distal
GTF2F1chr8145240817145240947+3.998123.29554HepG2MROH1intron-Distal
GTF2F1chr7110944674110944793-3.434097.91299K562IMMP2Lintron-Distal
GTF2F1chr223202502732025103-4.655644.70962HepG2PISDintron-Distal,intron-Proximal
GTF2F1chr5179049885179049952-4.4776843.83696HepG2HNRNPH1intron-Distal,intron-Proximal
GTF2F1chr156687882066878870+5.0758223.93200K562RP11-321F6.1intron-Distal
GTF2F1chr9132585267132585345-4.859906.43928K562TOR1Aintron-Distal
GTF2F1chr117083511270835216-5.3492210.74292HepG2SHANK2intron-Distal
GTF2F1chr168989492989895018+3.397245.87304HepG2SPIRE25'-UTR,CDS,intron-Distal
GTF2F1chr10126848231126848282-4.380634.46189K562CTBP2intron-Distal
GTF2F1chr12133251374133251412-3.913163.30705HepG2POLEintron-Distal
GTF2F1chr62040345620403545+5.1551313.11740K562E2F3intron-Distal
GTF2F1chr1121533162153323-5.34047400.00000HepG2IGF23'-UTR,intron-Distal
GTF2F1chr195579545955795523+4.452833.19125K562BRSK1intron-Distal,intron-Proximal
GTF2F1chr194278821842788276+4.012266.76440K562CIC5'-UTR,intron-Distal
GTF2F1chr432314273231501+4.960716.14086K562HTTintron-Distal
GTF2F1chr221949374619493856+3.5237114.61678K562CDC45intron-Distal
GTF2F1chr1121527522152757-7.00794400.00000HepG2IGF23'-UTR,intron-Distal
GTF2F1chr205011704650117177-6.0190516.07151K562NFATC2intron-Distal
GTF2F1chr224432149744321563+3.096943.40641HepG2PNPLA3intron-Distal
GTF2F1chr173702678237026883+3.944665.80839HepG2LASP1intron-Distal
GTF2F1chr13240305332403132-4.9086526.13486K562PTP4A2intron-Distal
GTF2F1chr193428727834287312+4.562444.70962HepG2KCTD15intron-Distal
GTF2F1chr142477910824779172+4.444664.41148HepG2LTB4R25'-UTR,intron-Distal
GTF2F1chr63112580431125898-4.052614.12529K562CCHCR15'-UTR,intron-Distal,intron-Proximal
GTF2F1chr12411819124118241+4.530414.95161K562LYPLA2intron-Distal
GTF2F1chr206258906662589115-3.815926.08141HepG2ZNF512B3'-UTR,intron-Distal
GTF2F1chr178054636380546419+4.253195.61307K562FOXK2intron-Distal
GTF2F1chr9132259666132259727+5.421569.86849HepG2LINC00963intron-Distal
GTF2F1chr1940362134036265+5.416377.83844HepG2PIAS4intron-Distal
GTF2F1chr167528085575280918-3.294413.94360HepG2BCAR1intron-Distal
GTF2F1chr88107041681070503-4.282934.13073HepG2TPD52intron-Distal
GTF2F1chr1911044621104540+4.895096.43928K562GPX45'-UTR,intron-Distal
GTF2F1chr76533833365338389+4.899374.46189K562VKORC1L15'-UTR,CDS
GTF2F1chr117027003870270113+4.711966.02367K562CTTNintron-Distal
GTF2F1chr12193180621931871-5.035146.41765K562RAP1GAPintron-Distal
GTF2F1chr156475343564753502+5.4327416.15183K562ZNF609intron-Distal
GTF2F1chr116256607462566205-4.5244710.01583HepG2NXF15'-UTR,intron-Distal,intron-Proximal
GTF2F1chr165030836350308433+4.428653.69238K562ADCY7intron-Distal
GTF2F1chr1940366334036774+5.4528318.92220K562PIAS4intron-Distal
GTF2F1chr1121533232153332-5.21895400.00000HepG2IGF23'-UTR,intron-Distal
GTF2F1chr24801067148010749+5.292989.90275HepG2MSH65'-UTR,intron-Distal,intron-Proximal
GTF2F1chr98659455786594607-3.510893.92966HepG2HNRNPKintron-Distal
GTF2F1chr1964243006424401-4.065164.95463K562KHSRP5'-UTR,intron-Distal,intron-Proximal
GTF2F1chr1144993238144993289-3.486393.77708K562PDE4DIPintron-Distal
GTF2F1chr105238191152382041-3.244234.50569K562SGMS1intron-Distal
GTF2F1chr3196043779196043824-4.576384.07596K562TM4SF19, TCTEX1D2, RP11-447L10.1intron-Distal
GTF2F1chr2159313608159313641+3.283893.41960K562PKP45'-UTR
GTF2F1chr191854858618548639-5.3326728.83581K562ISYNA1CDS,intron-Distal,intron-Proximal
GTF2F1chr195682585856825964-4.652383.77360K562ZSCAN5A5'-UTR,intron-Distal,intron-Proximal
GTF2F1chr134123890141238957-4.730956.13530HepG2FOXO1intron-Distal
GTF2F1chr7100732872100732954+3.563745.01332HepG2TRIM563'-UTR,intron-Distal
GTF2F1chr221979916519799268-4.733773.19125K562GNB1Lintron-Distal
GTF2F1chr203548584935485920-4.0809611.05708HepG2SOGA1intron-Distal
GTF2F1chr5180237093180237153-4.360657.48569K562MGAT15'-UTR,intron-Distal,intron-Proximal
GTF2F1chr1156023058156023165-4.158364.95463K562UBQLN4intron-Distal
GTF2F1chr7101472210101472304+4.051207.21436K562CUX1intron-Distal
GTF2F1chr224752362347523681+3.610543.94360HepG2TBC1D22Aintron-Distal
GTF2F1chr191854791518548000-4.2060620.58751K562ISYNA15'-UTR,intron-Distal,intron-Proximal
GTF2F1chr17938241938319-4.142873.30705HepG2ABRintron-Distal
GTF2F1chr203115308131153143-3.322903.41960K562C20orf112intron-Distal
GTF2F1chr10105380757105380846-4.280359.64014HepG2SH3PXD2Aintron-Distal
GTF2F1chr9140074015140074073-5.7279311.52233K562ANAPC2intron-Distal
GTF2F1chr6170123761170123832-4.698094.70962HepG2PHF10intron-Distal
GTF2F1chr12623270726232754-3.998123.30705HepG2STMN1intron-Distal,intron-Proximal
GTF2F1chr19354541793545525+4.531685.54349HepG2MTF2intron-Distal
GTF2F1chr214773171447731780-5.417637.03699K562C21orf58intron-Distal
GTF2F1chr103492511634925251-3.771264.99558HepG2PARD3intron-Distal
GTF2F1chr2183903011183903106-5.6583234.07410HepG2NCKAP15'-UTR,intron-Distal
GTF2F1chr174322592043225996+4.7271416.40638HepG2HEXIM15'-UTR
GTF2F1chr191420161214201652-4.263573.48173K562SAMD1intron-Distal,intron-Proximal
GTF2F1chr1100323393100323466+4.263573.77360K562AGLintron-Distal
GTF2F1chr168882660088826692-3.709923.01994HepG2PIEZO1intron-Distal
GTF2F1chr679103187910382-4.793465.82840HepG2TXNDC5, BLOC1S5-TXNDC5intron-Distal,intron-Proximal
GTF2F1chr206158427661584329+5.8919216.08125HepG2SLC17A9intron-Proximal
GTF2F1chr2242707503242707553+4.824165.56287HepG2D2HGDH3'-UTR
GTF2F1chr1121603502160354-3.87670400.00000HepG2INS-IGF2, IGF25'-UTR,intron-Distal
GTF2F1chr214689907946899154+4.635819.73265HepG2COL18A1intron-Distal




22 proteins are bound to GTF2F1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1963798146379901-3'-UTR,intron-Distal,intron-Proximal3.376935.90738K562UPF1
chr1963796726379723-3'-UTR,intron-Distal4.199789.90371K562PABPC4
chr1963796266379759-3'-UTR,intron-Distal4.4443510.95291HepG2UPF1
chr1963799996380049-3'-UTR,intron-Distal4.060013.19668HepG2UPF1
chr1963796656379733-3'-UTR,intron-Distal3.340716.13685K562UPF1
chr1963800106380072-3'-UTR,intron-Distal5.033127.65871K562METAP2
chr1963798576379889-3'-UTR,intron-Distal,intron-Proximal3.012753.50044K562YBX3
chr1963800006380083-3'-UTR,intron-Distal3.133653.32115K562AKAP1
chr1963798236379937-3'-UTR,intron-Distal,intron-Proximal4.300217.60084HepG2UPF1
chr1963931006393164-5'-UTR,intron-Distal,intron-Proximal3.950855.01580HepG2DDX3X
chr1963930276393156-5'-UTR,intron-Distal,intron-Proximal4.049539.88402K562DDX3X
chr1963919376391969-5'-UTR,CDS,intron-Distal,intron-Proximal3.5983211.50271K562YBX3
chr1963811346381193-CDS,intron-Distal,intron-Proximal4.8114617.32647K562UCHL5
chr1963894936389614-CDS,intron-Distal5.3602211.88998K562LIN28B
chr1963833226383360-CDS,intron-Distal4.474489.48722K562UCHL5
chr1963896346389640-CDS,intron-Distal4.8789523.05167K562YBX3
chr1963874686387572-CDS,intron-Distal,intron-Proximal3.021613.85861K562PUM1
chr1963875296387571-CDS,intron-Distal,intron-Proximal3.688083.01531K562YBX3
chr1963804366380480-CDS,intron-Distal4.217616.21592K562PUM1
chr1963804336380487-CDS,intron-Distal,intron-Proximal3.425383.58206K562LIN28B
chr1963803406380369-CDS,intron-Distal,intron-Proximal4.437444.45558HepG2GRWD1
chr1963833216383382-CDS,intron-Distal,intron-Proximal3.078993.80065HepG2PPIG
chr1963833966383428-CDS,intron-Distal5.270858.18727K562ZNF622
chr1963896406389648-CDS,intron-Distal4.9463724.36083K562YBX3
chr1963919206391937-CDS,intron-Distal4.4414521.30146K562YBX3
chr1963919126391929-CDS,intron-Distal,intron-Proximal3.337604.02291HepG2GRWD1
chr1963811326381141-CDS,intron-Distal,intron-Proximal3.118155.48645K562GRWD1
chr1963810286381053-CDS,intron-Distal,intron-Proximal4.462483.83824K562BUD13
chr1963813696381444-CDS,intron-Distal,intron-Proximal3.586714.57186K562TRA2A
chr1963811326381169-CDS,intron-Distal,intron-Proximal3.2485213.20068K562ZNF800
chr1963811316381179-CDS,intron-Distal,intron-Proximal4.824266.46301HepG2PPIG
chr1963809686381035-CDS,intron-Distal,intron-Proximal3.4973311.82670K562ZNF800
chr1963818286381858-CDS,intron-Distal,intron-Proximal3.460497.39639K562ZNF622
chr1963919146391920-CDS,intron-Distal4.2957019.26844K562YBX3
chr1963803666380376-CDS,intron-Distal,intron-Proximal3.035653.46769K562YBX3
chr1963874976387553-CDS,intron-Distal,intron-Proximal3.396654.44254K562GRWD1
chr1963809916381028-CDS,intron-Distal4.395853.56076K562BUD13
chr1963874146387466-CDS,intron-Distal,intron-Proximal3.173503.18634K562MTPAP
chr1963803396380346-CDS,intron-Distal,intron-Proximal3.790953.22721K562YBX3
chr1963810356381053-CDS,intron-Distal,intron-Proximal3.256259.54560K562ZNF800
chr1963811796381206-CDS,intron-Distal3.873587.88693K562PUM1
chr1963817086381743-CDS,intron-Distal,intron-Proximal3.111455.49645K562GRWD1
chr1963817556381805-CDS,intron-Distal,intron-Proximal3.5826910.27359K562UCHL5
chr1963813696381456-CDS,intron-Distal,intron-Proximal4.977127.48032HepG2G3BP1
chr1963811266381187-CDS,intron-Distal,intron-Proximal3.091703.18789HepG2BCLAF1
chr1963894626389622-CDS,intron-Distal4.444767.91821HepG2GRWD1
chr1963919116391937-CDS,intron-Distal,intron-Proximal3.211194.20168K562METAP2
chr1963813686381482-CDS,intron-Distal,intron-Proximal5.5769931.55212K562UCHL5
chr1963803696380446-CDS,intron-Distal,intron-Proximal4.468419.28811HepG2GRWD1
chr1963803466380366-CDS,intron-Distal,intron-Proximal4.030333.83925K562YBX3
chr1963896216389649-CDS,intron-Distal,intron-Proximal4.244755.63221K562METAP2
chr1963813696381468-CDS,intron-Distal,intron-Proximal4.761495.60757HepG2TRA2A
chr1963810406381053-CDS,intron-Distal,intron-Proximal3.682845.69924K562GRWD1
chr1963833576383399-CDS,intron-Distal4.064207.80721K562ZNF800
chr1963813696381438-CDS,intron-Distal,intron-Proximal3.531094.14811HepG2FXR2
chr1963816666381729-CDS,intron-Distal,intron-Proximal4.317456.04280HepG2PRPF8
chr1963874066387475-CDS,intron-Distal,intron-Proximal3.681256.38655K562GRWD1
chr1963811476381170-CDS,intron-Distal,intron-Proximal3.527138.32162K562ZNF622
chr1963894566389561-CDS,intron-Distal3.5460310.89980K562ZNF622
chr1963874536387571-CDS,intron-Distal,intron-Proximal3.422317.25129K562UCHL5
chr1963874756387567-CDS,intron-Distal,intron-Proximal3.748335.31167HepG2GRWD1
chr1963817126381769-CDS,intron-Distal,intron-Proximal4.971467.41350HepG2GRWD1
chr1963817086381772-CDS,intron-Distal,intron-Proximal4.3471910.07582K562ZNF622
chr1963809916381052-CDS,intron-Distal,intron-Proximal4.9503014.38113K562UCHL5
chr1963811966381206-CDS,intron-Distal4.057146.14226K562ZNF622
chr1963919126391914-CDS,intron-Distal,intron-Proximal4.5881127.37645K562YBX3
chr1963811696381193-CDS,intron-Distal3.4989612.27818K562ZNF800
chr1963817076381755-CDS,intron-Distal,intron-Proximal3.9223111.72200K562UCHL5
chr1963809796381054-CDS,intron-Distal,intron-Proximal3.877164.96634HepG2PPIG
chr1963811936381206-CDS,intron-Distal4.603358.07592K562UCHL5
chr1963811706381196-CDS,intron-Distal4.0594010.03782K562ZNF622
chr1963894566389637-CDS,intron-Distal3.4942215.62797K562UCHL5
chr1963813676381474-CDS,intron-Distal,intron-Proximal3.879785.59316K562SRSF1
chr1963813696381388-CDS,intron-Distal,intron-Proximal4.081106.09867K562PUM1
chr1963896226389634-CDS,intron-Distal4.5287717.32535K562YBX3
chr1963813696381466-CDS,intron-Distal,intron-Proximal3.8619915.61764K562ZNF622
chr1963809256380964-CDS,intron-Distal3.496145.53232K562PUM1
chr1963833796383430-CDS,intron-Distal3.627795.67466K562GRWD1
chr1963816146381617-CDS,intron-Distal,intron-Proximal4.331784.42734K562UCHL5
chr1963868226386941-intron-Distal4.048623.31709K562ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




No autoregularoty interactions between protein GTF2F1 and its RNA.



Diffrential Expression
  • 558 differentially expressed genes after Knockdown/Knockout GTF2F1 protein.  





  • 87 RBPs can affect the levels of GTF2F1.  







558 differentially expressed genes after Knockdown/Knockout GTF2F1 protein :

Only display 100 entries as example. Please click "View All" button to see all 558 entries.     

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LASP1ENSG00000002834.138953.105806169.105000.537203.642101.84700HepG2GTF2F1
PLXND1ENSG00000004399.82735.209801569.516000.801205.323603.27030HepG2GTF2F1
ASB4ENSG00000005981.8321.7746077.283402.0577018.3710015.07800HepG2GTF2F1
TNFRSF12AENSG00000006327.9755.54040388.934900.957907.421705.05050HepG2GTF2F1
IFRD1ENSG00000006652.9751.67620507.283500.567203.061201.39920HepG2GTF2F1
MYLIPENSG00000007944.10216.61990111.669800.955804.328902.41850HepG2GTF2F1
AASSENSG00000008311.10308.61600572.91660-0.892504.706902.72570HepG2GTF2F1
ST3GAL1ENSG00000008513.10861.937301517.24960-0.815806.480104.27160HepG2GTF2F1
IL32ENSG00000008517.123307.020901892.297700.805307.050504.74440HepG2GTF2F1
SCMH1ENSG00000010803.12772.734601142.76280-0.564503.317901.58760HepG2GTF2F1
NR1H4ENSG00000012504.9418.22540908.71360-1.119508.080605.60030HepG2GTF2F1
CYP24A1ENSG00000019186.5859.42980343.992301.3209013.2658010.31400HepG2GTF2F1
TOMM34ENSG00000025772.71422.29340933.031900.608103.887002.03890HepG2GTF2F1
FUT8ENSG00000033170.12703.94620461.850800.607903.382501.63480HepG2GTF2F1
TMSB10ENSG00000034510.46761.572604441.449100.606204.441902.50490HepG2GTF2F1
TIMP2ENSG00000035862.82563.084401329.492000.946909.184206.59550HepG2GTF2F1
VCANENSG00000038427.114820.243303005.629800.681305.333003.27580HepG2GTF2F1
DNAH5ENSG00000039139.931.820006.828502.220203.600301.81210HepG2GTF2F1
USP28ENSG00000048028.7592.96490869.53200-0.552303.025701.37320HepG2GTF2F1
ADAMTS6ENSG00000049192.10572.41340337.270800.763104.534502.57760HepG2GTF2F1
SYNE2ENSG00000054654.11897.606201341.68600-0.579903.553901.77460HepG2GTF2F1
FAM168AENSG00000054965.6728.579001337.17590-0.876007.169604.84810HepG2GTF2F1
GYG2ENSG00000056998.14384.31710625.96360-0.703804.146702.25700HepG2GTF2F1
DCBLD2ENSG00000057019.114629.910203239.700400.515003.252501.53890HepG2GTF2F1
F7ENSG00000057593.9380.06050641.35080-0.754904.714602.73160HepG2GTF2F1
VMP1ENSG00000062716.65302.356303625.704200.548303.653801.85520HepG2GTF2F1
CASP8ENSG00000064012.171229.30780838.713100.551503.204601.50330HepG2GTF2F1
CDONENSG00000064309.10413.84680662.71820-0.679304.010602.14340HepG2GTF2F1
HIPK2ENSG00000064393.113513.119305151.57290-0.552303.717201.90420HepG2GTF2F1
SLC12A2ENSG00000064651.9541.08110356.872200.600303.107301.43350HepG2GTF2F1
ERBB3ENSG00000065361.106504.379109906.73760-0.607004.505202.55830HepG2GTF2F1
MYLKENSG00000065534.14421.66280802.63910-0.928707.180504.85510HepG2GTF2F1
FAM107BENSG00000065809.91449.71190829.908400.804606.354204.15770HepG2GTF2F1
FGFR2ENSG00000066468.1615.78420101.83700-2.689708.125805.63410HepG2GTF2F1
ACSM2BENSG00000066813.10132.02830423.23410-1.6806014.2244011.21930HepG2GTF2F1
MAOBENSG00000069535.12590.98710862.89950-0.546102.945301.31570HepG2GTF2F1
WIPI1ENSG00000070540.81105.06500748.863300.561303.229601.52250HepG2GTF2F1
ASNSENSG00000070669.12496.76170305.872700.699503.832601.99340HepG2GTF2F1
MAP4K4ENSG00000071054.1118809.5601013400.787100.489003.148701.46490HepG2GTF2F1
RPL31ENSG00000071082.67573.7751010926.26700-0.528703.524901.75470HepG2GTF2F1
ASAH2CENSG00000072444.1037.9172097.02570-1.355504.365302.44410HepG2GTF2F1
EVCENSG00000072840.8425.74030664.97410-0.643303.615601.82280HepG2GTF2F1
NDE1ENSG00000072864.81530.908201040.863400.556503.390701.64090HepG2GTF2F1
SEMA3AENSG00000075213.6123.1682041.820701.558206.561804.32850HepG2GTF2F1
MCAMENSG00000076706.101449.36520853.469300.763905.799003.68500HepG2GTF2F1
IL4RENSG00000077238.91049.03130636.685500.720304.284002.37960HepG2GTF2F1
GPR137BENSG00000077585.9110.2496048.558301.182904.036002.16480HepG2GTF2F1
C12orf5ENSG00000078237.4243.39830109.408501.153506.247404.07650HepG2GTF2F1
BPIFB2ENSG00000078898.67143.6224010383.94790-0.539603.473401.70980HepG2GTF2F1
OSTM1ENSG00000081087.10544.82710362.155700.589102.954501.32410HepG2GTF2F1
ARG2ENSG00000081181.3991.51520482.487601.039009.211906.61600HepG2GTF2F1
CADPS2ENSG00000081803.111163.62130744.764800.643703.192401.49790HepG2GTF2F1
PHLPP1ENSG00000081913.9592.77820868.28460-0.550703.004101.35990HepG2GTF2F1
ITGB5ENSG00000082781.73486.992602296.488000.602504.237602.34060HepG2GTF2F1
P2RX5ENSG00000083454.1772.3324030.257601.257203.260401.54490HepG2GTF2F1
FAT1ENSG00000083857.916085.9889010617.317100.599304.439502.50400HepG2GTF2F1
HALENSG00000084110.6261.44230916.84650-1.8102023.3818019.31600HepG2GTF2F1
AGBL5ENSG00000084693.11922.033301368.56670-0.569803.435601.67620HepG2GTF2F1
MMP2ENSG00000087245.8368.29280193.595200.927705.432503.36400HepG2GTF2F1
TXNDC16ENSG00000087301.4193.49230321.22960-0.731303.468201.70660HepG2GTF2F1
C14orf166ENSG00000087302.4952.008901502.66960-0.658504.467402.52710HepG2GTF2F1
SLC6A14ENSG00000087916.7420.820501134.20400-1.4304016.4020013.21130HepG2GTF2F1
PLK1S1ENSG00000088970.112631.381201861.903100.498902.964101.33130HepG2GTF2F1
TESCENSG00000088992.13845.67290560.284200.593803.430201.67300HepG2GTF2F1
BIRC5ENSG00000089685.10824.606901274.80200-0.628503.640301.84640HepG2GTF2F1
ICAM1ENSG00000090339.43283.542801907.777600.783306.679204.41960HepG2GTF2F1
LYZENSG00000090382.276164.4689048312.479700.656605.293303.24250HepG2GTF2F1
DNAJB11ENSG00000090520.62753.768101938.299000.506503.106501.43350HepG2GTF2F1
TFENSG00000091513.10132134.56410191709.47530-0.536903.714901.90320HepG2GTF2F1
APOHENSG00000091583.622636.8129043932.64590-0.956609.748307.08910HepG2GTF2F1
XYLBENSG00000093217.5536.30620818.07440-0.609203.559201.77670HepG2GTF2F1
BAMBIENSG00000095739.7731.54390441.759200.727604.574102.61040HepG2GTF2F1
PCSK5ENSG00000099139.984.5802038.224701.145703.190501.49770HepG2GTF2F1
NRP1ENSG00000099250.131576.00110896.646200.813606.532104.31140HepG2GTF2F1
HSD17B7P2ENSG00000099251.10110.66880256.19180-1.211007.011504.71530HepG2GTF2F1
PLA2G3ENSG00000100078.365.3244023.929901.448703.677601.87460HepG2GTF2F1
LGALS1ENSG00000100097.7945.11140537.368200.814503.478101.71330HepG2GTF2F1
PNPLA3ENSG00000100344.6343.73230529.10360-0.622303.211101.50890HepG2GTF2F1
PYGLENSG00000100504.122517.850403535.71170-0.489802.973201.33700HepG2GTF2F1
C14orf105ENSG00000100557.567.4470025.629901.395803.567001.78330HepG2GTF2F1
ISM2ENSG00000100593.131514.026401050.042200.527803.106001.43350HepG2GTF2F1
HIF1AENSG00000100644.125201.473503310.328300.651804.948902.93230HepG2GTF2F1
HNF4AENSG00000101076.123125.951804716.68640-0.593504.172302.27820HepG2GTF2F1
C20orf24ENSG00000101084.121490.71580994.990500.583203.682801.87830HepG2GTF2F1
NFATC2ENSG00000101096.15348.01940579.81990-0.736404.374602.45030HepG2GTF2F1
BIRC7ENSG00000101197.8113.0849045.097701.326204.923102.90840HepG2GTF2F1
TBL1XENSG00000101849.11898.859901562.71620-0.797906.268504.09210HepG2GTF2F1
MOSPD1ENSG00000101928.8448.34200264.219500.762804.235402.33980HepG2GTF2F1
SCML2ENSG00000102098.13133.82690225.37280-0.751903.061101.39920HepG2GTF2F1
PCYT1BENSG00000102230.9158.78370282.22970-0.829803.905102.05020HepG2GTF2F1
TIMP1ENSG00000102265.7860.02810310.119001.4715016.1218012.96010HepG2GTF2F1
SRPX2ENSG00000102359.5126.8189053.398101.247804.866702.86480HepG2GTF2F1
KLF5ENSG00000102554.9164.8429090.288100.868403.196601.49980HepG2GTF2F1
RGCCENSG00000102760.1275.5639019.332401.966606.289204.10140HepG2GTF2F1
GSRENSG00000104687.81926.505202719.50300-0.497403.022501.37090HepG2GTF2F1
TJP3ENSG00000105289.106.6422032.19990-2.277303.676801.87460HepG2GTF2F1
PIK3R2ENSG00000105647.10188.08860538.82770-1.518403.613101.82230HepG2GTF2F1
HAMPENSG00000105697.396.86240251.21300-1.374908.512305.98100HepG2GTF2F1
PON2ENSG00000105854.85203.748503655.127800.509503.238001.52730HepG2GTF2F1
LFNGENSG00000106003.8139.6232048.269601.532306.953604.66600HepG2GTF2F1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





87 RBPs can affect the gene expression of GTF2F1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GTF2F1ENSG00000125651.9964.555201600.96750-0.731007.211905.78900HepG2ABCF1
GTF2F1ENSG00000125651.91465.366301205.715900.281303.436202.77120HepG2ACO1
GTF2F1ENSG00000125651.92249.025401634.652800.460203.425802.84240HepG2AKAP1
GTF2F1ENSG00000125651.9852.605501211.41730-0.506707.825406.61470HepG2AKAP8L
GTF2F1ENSG00000125651.91371.31790878.047100.643103.650102.57560HepG2BCCIP
GTF2F1ENSG00000125651.9682.24080911.46420-0.417903.570702.71100HepG2CALR
GTF2F1ENSG00000125651.9878.990201310.29710-0.576005.998105.02050HepG2CPSF6
GTF2F1ENSG00000125651.91081.11130844.489900.356302.746602.07040HepG2DDX21
GTF2F1ENSG00000125651.9992.44800684.138700.536609.097407.99540HepG2DNAJC2
GTF2F1ENSG00000125651.91014.780201428.64310-0.493503.838103.08970HepG2EIF4A3
GTF2F1ENSG00000125651.9899.013902023.88250-1.1707044.3472042.49020HepG2ETF1
GTF2F1ENSG00000125651.9840.200701122.22440-0.417603.715202.81230HepG2FUBP3
GTF2F1ENSG00000125651.91777.276201442.050300.301401.927401.34610HepG2FXR1
GTF2F1ENSG00000125651.9124.00660822.67530-2.729905.976203.83910HepG2GTF2F1
GTF2F1ENSG00000125651.9747.905001118.96770-0.581208.142406.69310HepG2HNRNPA2B1
GTF2F1ENSG00000125651.9959.83100617.068300.637303.473301.89840HepG2HNRNPAB
GTF2F1ENSG00000125651.91313.607301109.087200.244102.792002.11590HepG2HNRNPL
GTF2F1ENSG00000125651.91118.304501417.49620-0.342002.358201.77180HepG2HNRNPLL
GTF2F1ENSG00000125651.9650.072301115.62010-0.7792010.773909.12220HepG2HNRNPM
GTF2F1ENSG00000125651.91077.97430769.975600.485307.066906.13360HepG2HNRNPU
GTF2F1ENSG00000125651.91015.257301359.31630-0.421003.177702.45970HepG2IGF2BP2
GTF2F1ENSG00000125651.91136.79930786.503700.531409.843008.54540HepG2ILF2
GTF2F1ENSG00000125651.91034.65830712.061600.539003.179701.88470HepG2KHDRBS1
GTF2F1ENSG00000125651.91070.80670793.509800.432303.095001.81200HepG2LIN28B
GTF2F1ENSG00000125651.91010.055001445.60040-0.517203.036102.01770HepG2MTPAP
GTF2F1ENSG00000125651.91343.71550793.274400.760202.721901.63770HepG2NONO
GTF2F1ENSG00000125651.91150.45780682.557700.753104.496203.34810HepG2PABPC1
GTF2F1ENSG00000125651.91004.84290762.137600.398704.571303.51380HepG2PARN
GTF2F1ENSG00000125651.9943.72540686.755800.458505.217304.23410HepG2PPIL4
GTF2F1ENSG00000125651.92038.060701223.428800.7362025.1370023.71710HepG2PUM1
GTF2F1ENSG00000125651.91503.567701222.532100.298402.257101.64880HepG2PUM2
GTF2F1ENSG00000125651.91065.809001532.90200-0.524305.772704.91860HepG2QKI
GTF2F1ENSG00000125651.91141.226701624.22130-0.509206.895005.62460HepG2RBM15
GTF2F1ENSG00000125651.91290.459001691.57040-0.390505.005404.36030HepG2RBM22
GTF2F1ENSG00000125651.9934.326201391.23400-0.574407.172206.12770HepG2RBM25
GTF2F1ENSG00000125651.91208.38880911.621100.406502.663501.68880HepG2RBM27
GTF2F1ENSG00000125651.91041.90010740.279700.493002.850001.77240HepG2RCC2
GTF2F1ENSG00000125651.91025.755501388.64660-0.437004.041903.24170HepG2RPLP0
GTF2F1ENSG00000125651.9980.88030685.694300.516407.766406.76740HepG2SAFB2
GTF2F1ENSG00000125651.91018.87590706.542100.528003.167301.77110HepG2SART3
GTF2F1ENSG00000125651.9612.63160819.47620-0.419703.131502.12820HepG2SERBP1
GTF2F1ENSG00000125651.92118.551101508.750700.489603.289902.55260HepG2SF3A3
GTF2F1ENSG00000125651.91098.624501403.05750-0.352902.704102.00590HepG2SF3B1
GTF2F1ENSG00000125651.91270.811101473.61190-0.213601.857801.35680HepG2SF3B4
GTF2F1ENSG00000125651.91316.274201105.072800.252202.894002.17810HepG2SLBP
GTF2F1ENSG00000125651.91026.21800799.630300.359804.648703.85080HepG2SMN1
GTF2F1ENSG00000125651.91387.78960814.329700.769003.210402.17010HepG2SMNDC1
GTF2F1ENSG00000125651.91666.250801910.52960-0.197402.453501.97160HepG2SRFBP1
GTF2F1ENSG00000125651.91285.285501538.15620-0.259102.733402.26270HepG2SRSF1
GTF2F1ENSG00000125651.91663.029301137.926400.5473010.578109.45970HepG2SRSF5
GTF2F1ENSG00000125651.91057.308501251.39310-0.243102.389201.86880HepG2SRSF9
GTF2F1ENSG00000125651.91417.813001658.72750-0.226402.566702.06760HepG2SSB
GTF2F1ENSG00000125651.91011.18680652.936500.630903.542702.28440HepG2STIP1
GTF2F1ENSG00000125651.91818.360401294.130800.4906010.430809.35430HepG2SUCLG1
GTF2F1ENSG00000125651.9812.996801382.62260-0.7661014.5809013.44300HepG2TAF15
GTF2F1ENSG00000125651.91241.98000754.864600.7183015.2234014.04920HepG2TRIM56
GTF2F1ENSG00000125651.9583.967601056.27800-0.8550019.6357018.13620HepG2ZC3H8
GTF2F1ENSG00000125651.91671.644701471.578000.183802.066401.57500HepG2ZNF622
GTF2F1ENSG00000125651.91367.877602464.13950-0.8491014.2281011.62020K562ABCF1
GTF2F1ENSG00000125651.93370.587602789.528400.272902.695502.13340K562AGGF1
GTF2F1ENSG00000125651.93728.170803065.495000.282202.754901.77630K562AKAP8
GTF2F1ENSG00000125651.93554.524102746.876300.371804.092303.40620K562AQR
GTF2F1ENSG00000125651.91687.581201407.465500.261802.839601.86720K562BCLAF1
GTF2F1ENSG00000125651.91432.974701067.772500.424305.177503.66850K562CSTF2
GTF2F1ENSG00000125651.93527.509604320.93640-0.292703.509402.40850K562CELF1
GTF2F1ENSG00000125651.91932.540201574.924300.295103.408401.39130K562DDX24
GTF2F1ENSG00000125651.91824.149001302.304500.486104.511503.32950K562EFTUD2
GTF2F1ENSG00000125651.91912.714001632.570200.228402.445001.32160K562EIF2S1
GTF2F1ENSG00000125651.91278.47500810.263500.6579010.111008.58290K562EIF3G
GTF2F1ENSG00000125651.91923.868801552.866500.309002.521601.73910K562EIF4A3
GTF2F1ENSG00000125651.91719.081301398.408500.297803.096801.85650K562EIF4B
GTF2F1ENSG00000125651.91719.904001355.473100.343403.854802.29630K562EWSR1
GTF2F1ENSG00000125651.91100.129701462.76550-0.411003.119101.90870K562FKBP4
GTF2F1ENSG00000125651.91156.082401423.22790-0.299902.109501.35790K562FMR1
GTF2F1ENSG00000125651.91993.704701614.910100.303903.630402.95190K562FXR1
GTF2F1ENSG00000125651.9290.86430656.00250-1.173409.221407.77900K562G3BP2
GTF2F1ENSG00000125651.91644.754401335.332700.300602.379301.64080K562GPKOW
GTF2F1ENSG00000125651.9177.668001835.71740-3.3691043.1074038.73950K562GTF2F1
GTF2F1ENSG00000125651.9918.641001457.15800-0.665606.603505.07080K562HNRNPM
GTF2F1ENSG00000125651.91799.511301107.035600.700805.543203.88350K562IGF2BP2
GTF2F1ENSG00000125651.91696.362601162.395100.545203.729502.74420K562MAGOH
GTF2F1ENSG00000125651.92069.224102643.90470-0.353606.253105.07940K562MTPAP
GTF2F1ENSG00000125651.91905.021501267.302600.587905.935904.83600K562PRPF8
GTF2F1ENSG00000125651.91681.513701129.418500.574104.484003.65910K562PTBP1
GTF2F1ENSG00000125651.91839.490501082.400700.765008.038506.50810K562RBM22
GTF2F1ENSG00000125651.9825.26510621.705900.408503.215201.77520K562RBM25
GTF2F1ENSG00000125651.91483.921401055.575700.491302.759701.38540K562RBM34
GTF2F1ENSG00000125651.9901.80230665.421400.438403.649501.67910K562RECQL
GTF2F1ENSG00000125651.91001.93470681.639300.555605.675804.42250K562SF3B4
GTF2F1ENSG00000125651.92489.472102969.80520-0.254504.259903.12500K562SRPK2
GTF2F1ENSG00000125651.91836.352301107.325200.729705.251004.28210K562SRSF1
GTF2F1ENSG00000125651.91616.180001046.078600.627505.175703.65870K562SRSF5
GTF2F1ENSG00000125651.91833.923402324.15440-0.341802.728801.38140K562SSRP1
GTF2F1ENSG00000125651.91917.246901120.430000.774906.834505.67670K562TARDBP
GTF2F1ENSG00000125651.91788.522101080.848300.726505.704904.46240K562TIA1
GTF2F1ENSG00000125651.91146.958201452.44050-0.340702.322001.47030K562TIAL1
GTF2F1ENSG00000125651.91689.743601061.238300.671003.223102.03000K562TRA2A
GTF2F1ENSG00000125651.92423.716103114.74310-0.361906.750505.68280K562UPF1
GTF2F1ENSG00000125651.92417.376502771.54160-0.197202.530501.71840K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





54 alternative splicing events after Knockdown/Knockout GTF2F1 protein :

Only display 100 entries as example. Please click "View All" button to see all 54 entries.     

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENCAPG2ENSG00000146918.15chr7-1584449841584451721584391511584392551584472861584473860.098000.000010.06578includedK562GTF2F1
SEHIST1H2ACENSG00000180573.8chr6+2612792526127989261244302612486126138281261393440.103000.000000.00833includedK562GTF2F1
SEPCGF3ENSG00000185619.13chr4+726232726287724758724899727460727578-0.393000.000000.03810excludedK562GTF2F1
SECALUENSG00000128595.12chr7+128388626128388858128379345128379486128398924128399091-0.156000.000000.00833excludedK562GTF2F1
SEASCC2ENSG00000100325.10chr22-3022346530223589302216823022176930228233302283310.118000.000050.06336includedHepG2GTF2F1
SEELL2ENSG00000118985.10chr5-9526833595268417952551279525524995278705952787530.073000.000010.02493includedHepG2GTF2F1
SEYIPF1ENSG00000058799.9chr1-5432067354320724543173915431794354325728543258260.486000.000020.04092includedHepG2GTF2F1
SEMLLT4ENSG00000130396.16chr6+1683140821683141031683119631683121691683148471683149930.209000.000040.05704includedHepG2GTF2F1
SESH3D19ENSG00000109686.12chr4-1520653711520654401520650611520652021520690731520693380.170000.000040.05704includedHepG2GTF2F1
SERALYENSG00000125970.7chr20+3266162432661672326613683266144132663679326638450.097000.000020.03450includedHepG2GTF2F1
SEANKRD10ENSG00000088448.10chr13-1115528761115530411115455431115456101115583791115584710.213000.000080.09463includedHepG2GTF2F1
SEFLNBENSG00000136068.10chr3+5812758458127656581240085812425658128376581284790.149000.000000.01691includedHepG2GTF2F1
SEHNMTENSG00000150540.9chr2+1387598531387599131387596331387597641387627011387627950.142000.000040.05734includedHepG2GTF2F1
SEANKRD11ENSG00000167522.10chr16-8935808889358185893574208935759189371613893717520.350000.000000.01108includedHepG2GTF2F1
SEAXIN2ENSG00000168646.8chr17-6355368163553761635456376354577863553923635548540.090000.000030.05088includedHepG2GTF2F1
SEAFMIDENSG00000183077.11chr17+7620168376201819761987837619883276202026762021310.107000.000040.05704includedHepG2GTF2F1
SEPPP2R4ENSG00000119383.15chr9+1318902421318903471318853301318854171318912631318913890.133000.000080.09532includedHepG2GTF2F1
SEGPR126ENSG00000112414.10chr6+1427620441427620901427593481427595011427644731427674030.154000.000000.00173includedHepG2GTF2F1
SESTAT6ENSG00000166888.6chr12-5750372357503893575019455750208257504911575051960.131000.000020.04851includedHepG2GTF2F1
SEALG13ENSG00000101901.6chrX+1109293641109294021109281921109283311109311141109312970.192000.000010.02493includedHepG2GTF2F1
SETTLENSG00000114999.7chr2+1132787981132789181132778581132780021132862571132993160.158000.000010.01836includedHepG2GTF2F1
SESOS1ENSG00000115904.8chr2-3921641039216455392146133921473239222263392225280.197000.000050.06074includedHepG2GTF2F1
SEPRKAR1AENSG00000108946.10chr17+6651112766511260665079206650828366511534665117170.084000.000000.01268includedHepG2GTF2F1
SESMARCA2ENSG00000080503.15chr9+2170418217047221616852161903218157021816760.181000.000030.05686includedHepG2GTF2F1
SECCNL1ENSG00000163660.7chr3-1568747991568748721568708241568709451568766541568767640.249000.000010.02158includedHepG2GTF2F1
SESETD5ENSG00000168137.11chr3+9494571949463594900719490314949542294955520.134000.000000.01108includedHepG2GTF2F1
SENKD1ENSG00000140807.4chr16+5065166350651716506422045064227150655512506556190.072000.000000.01691includedHepG2GTF2F1
SERABL6ENSG00000196642.11chr9+139703706139703881139702412139702778139717976139718111-0.127000.000060.07462excludedHepG2GTF2F1
RIXPOTENSG00000184575.7chr12+6481881764819237648188176481896264819117648192370.127000.000160.09191includedK562GTF2F1
RIMAP3K7ENSG00000135341.13chr6-9126018691261898912601869126026891261767912618980.120000.000010.01930includedK562GTF2F1
RIRTEL1-TNFRSF6BENSG00000026036.16chr20+6232309462324356623230946232319062324157623243560.203000.000150.09191includedK562GTF2F1
RISRRM1ENSG00000133226.12chr1+2497315724975520249731572497328024975349249755200.192000.000020.02087includedK562GTF2F1
RIRBM6ENSG00000004534.10chr3+5009889450099541500988945009898050099394500995410.150000.000000.00122includedK562GTF2F1
RIRBM5ENSG00000003756.12chr3+5013796450140599501379645013803850140515501405990.245000.000130.08750includedK562GTF2F1
RIADCK3ENSG00000163050.12chr1+227169727227170464227169727227169850227170378227170464-0.115000.000010.01930excludedK562GTF2F1
RIZNF598ENSG00000167962.8chr16-204949620504822049496205025720503912050482-0.113000.000090.07112excludedK562GTF2F1
RISREK1ENSG00000153914.11chr5+6545824165459750654582416545842065459619654597500.151000.000100.05691includedHepG2GTF2F1
RIDDX17ENSG00000100201.14chr22-3888388338888120388838833888412038888060388881200.141000.000040.03086includedHepG2GTF2F1
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.135000.000140.07124includedHepG2GTF2F1
RIGAS5ENSG00000234741.3chr1-1738336211738338421738336211738336441738338121738338420.081000.000170.07336includedHepG2GTF2F1
RIGAS5ENSG00000234741.3chr1-1738333941738344201738333941738338421738343661738344200.079000.000170.07336includedHepG2GTF2F1
RIPTPRMENSG00000173482.12chr18+8376459837841283764598376595837826283784120.212000.000090.05691includedHepG2GTF2F1
RISTX10ENSG00000104915.10chr19-1325487513255485132548751325530013255390132554850.118000.000030.03086includedHepG2GTF2F1
RISMYD2ENSG00000143499.9chr1+214505360214507651214505360214505535214507542214507651-0.060000.000100.05691excludedHepG2GTF2F1
RIENO2ENSG00000111674.4chr12+702583470262717025834702589370262017026271-0.112000.000000.00860excludedHepG2GTF2F1
RIMINK1ENSG00000141503.11chr17+479294147940304792941479305847938114794030-0.550000.000020.02789excludedHepG2GTF2F1
MXEMORF4L2ENSG00000123562.12chrX-1029334261029335481029396081029396571029317531029319791029400981029401880.115000.000120.079051includedHepG2GTF2F1
MXEMORF4L2ENSG00000123562.12chrX-1029334261029335281029396081029396571029314241029319791029400981029401880.113000.000080.064731includedHepG2GTF2F1
MXEMORF4L2ENSG00000123562.12chrX-1029334261029335791029396081029396571029304271029319791029400981029401880.125000.000010.017091includedHepG2GTF2F1
MXEPROCENSG00000115718.13chr2+1281775011281775881281788581281790251281760141281760681281804921281805170.149000.000010.018811includedHepG2GTF2F1
MXEPROCENSG00000115718.13chr2+1281775011281775881281788931281790251281760021281760681281804921281805170.137000.000050.055011includedHepG2GTF2F1
MXEGIGYF2ENSG00000204120.10chr2+233595831233595944233599126233599196233568133233568199233599864233599948-0.287000.000120.079052includedHepG2GTF2F1
MXERALYENSG00000125970.7chr20+3266136832661441326616243266167232659871326600113266367932663846-0.184000.000170.095542includedHepG2GTF2F1
MXEANKRD11ENSG00000167522.10chr16-8935808889358185893716138937175289357420893575918938334089383486-0.177000.000030.039622includedHepG2GTF2F1





6 RBPs can affect the splicing of GTF2F1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGTF2F1ENSG00000125651.9chr19-6392213639242163919126391985639286763929140.057000.001140.07662includedHepG2DDX3X
SEGTF2F1ENSG00000125651.9chr19-6392213639242163919126391985639286763929140.177000.000000.00000includedHepG2PTBP1
SEGTF2F1ENSG00000125651.9chr19-6392213639242163919126391985639286763929140.065000.000010.00058includedK562PTBP1
A3SSGTF2F1ENSG00000125651.9chr19-6383333638355763833336383506638739963875700.068000.000000.00000longerK562AQR
A5SSGTF2F1ENSG00000125651.9chr19-638739963875706387468638757063833216383506-0.154000.000000.00054shorterK562HNRNPC
RIGTF2F1ENSG00000125651.9chr19-6380914638120663809146381053638113263812060.056000.003380.02494includedHepG2U2AF2
RIGTF2F1ENSG00000125651.9chr19-6381369638162663813696381489638156463816260.088000.000000.00000includedK562PRPF8
RIGTF2F1ENSG00000125651.9chr19-6380914638120663809146381053638113263812060.156000.000000.00000includedK562AQR
RIGTF2F1ENSG00000125651.9chr19-6381369638162663813696381489638156463816260.099000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





No autoregularoty alternative splicing events between protein GTF2F1 and its RNA.