TVP23C

General Information

Gene Name       : TVP23C
Gene ID             : ENSG00000175106.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TVP23C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TVP23CENSG00000175106.160.901.241.07ENCSR000AEF
HepG2TVP23CENSG00000175106.166.0913.449.77ENCSR985KAT
K562TVP23CENSG00000175106.164.744.474.61ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TVP23C is not avaliable on ENCORE database.



Proteins bound to RNA
  • TVP23C RNA is bound by 40 proteins.  







eCLIP assay for TVP23C is not avaliable on ENCORE database.





40 proteins are bound to TVP23C RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr171541026315410313-3'-UTR,intron-Distal4.690575.51162HepG2U2AF2
chr171544913315449193-3'-UTR,5'-UTR,CDS,intron-Distal3.7588016.85915HepG2BCLAF1
chr171540594115406009-3'-UTR,intron-Distal4.716874.39097HepG2HNRNPUL1
chr171544383315443877-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.9594612.80995HepG2BCLAF1
chr171541978915419859-3'-UTR,intron-Distal3.305543.69481K562UCHL5
chr171534124915341416-3'-UTR,CDS,intron-Distal,intron-Proximal3.102985.42438HepG2ZNF800
chr171544909515449133-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.7037514.52449HepG2BCLAF1
chr171540593415405991-3'-UTR,intron-Distal3.091453.64792HepG2HNRNPU
chr171541978015419892-3'-UTR,intron-Distal3.819234.86787HepG2TRA2A
chr171544024715440307-3'-UTR,intron-Distal,intron-Proximal,polyA_site4.0317014.20523HepG2KHSRP
chr171545705115457111-5'-UTR,CDS,intron-Distal,intron-Proximal3.625595.60389HepG2PPIG
chr171546654815466620-5'-UTR,intron-Distal3.831166.98486HepG2PRPF4
chr171545703815457118-5'-UTR,CDS,intron-Distal,intron-Proximal3.305779.03599HepG2GRWD1
chr171540650115406554-5'-UTR,CDS,intron-Distal,intron-Proximal3.965476.44734K562U2AF1
chr171540646215406556-5'-UTR,CDS,intron-Distal,intron-Proximal4.108297.25163K562U2AF2
chr171540647515406556-5'-UTR,CDS,intron-Distal,intron-Proximal4.4593920.44056HepG2U2AF2
chr171542733115427386-intron-Distal4.775174.97583HepG2GTF2F1
chr171543280015432916-intron-Distal3.465616.99796HepG2HNRNPL
chr171544761315447697-intron-Distal4.164733.04224HepG2SUGP2
chr171538110715381169-intron-Distal4.216584.24441HepG2ILF3
chr171538805415388100-intron-Distal3.681925.78794HepG2SUGP2
chr171542738815427469-intron-Distal3.4226117.50031K562HNRNPL
chr171537547915375554-intron-Distal3.584186.22956HepG2HNRNPL
chr171537859115378607-intron-Distal4.297878.21761HepG2PTBP1
chr171541963115419686-intron-Distal,intron-Proximal3.680016.50583HepG2TIAL1
chr171538734515387389-intron-Distal3.504573.84025HepG2SUGP2
chr171536888015369056-intron-Distal4.848075.71021K562TARDBP
chr171538766415387713-intron-Distal3.283254.89395HepG2SUGP2
chr171541123815411371-intron-Distal4.6212524.60242HepG2HNRNPL
chr171543574015435831-intron-Distal3.383363.67498K562SAFB2
chr171538807715388214-intron-Distal3.616559.18037HepG2HNRNPL
chr171542733415427388-intron-Distal5.1254418.73900K562HNRNPL
chr171539684515396969-intron-Distal4.505125.90542HepG2PRPF4
chr171541458315414661-intron-Distal4.934496.92461HepG2XRCC6
chr171538615215386210-intron-Distal3.553544.84410HepG2SUGP2
chr171536845115368557-intron-Distal4.443303.06243HepG2SRSF7
chr171536821215368277-intron-Distal3.558884.04775HepG2STAU2
chr171536808415368159-intron-Distal3.550965.39685HepG2CSTF2T
chr171536928915369378-intron-Distal3.787704.74917HepG2PCBP2
chr171541964615419675-intron-Distal,intron-Proximal3.489794.72143K562TIA1
chr171537855815378591-intron-Distal5.218037.79427HepG2PTBP1
chr171536916715369268-intron-Distal3.749024.49607HepG2STAU2
chr171536414015364209-intron-Distal4.062853.63902HepG2CSTF2T
chr171538687215386900-intron-Distal4.394453.84389HepG2SUGP2
chr171539663815396725-intron-Distal4.049104.35952HepG2PRPF4
chr171543909615439183-intron-Distal4.7297416.57539K562CPSF6
chr171536880015368867-intron-Distal5.022826.15718HepG2FUBP3
chr171540715915407260-intron-Distal3.116046.07707HepG2PCBP2
chr171538707915387153-intron-Distal4.883597.34531HepG2SUGP2
chr171541967515419710-intron-Distal,intron-Proximal4.288556.10049K562TIA1
chr171542733515427374-intron-Distal4.6532219.14617HepG2HNRNPL
chr171539077315390872-intron-Distal3.178253.54222HepG2TAF15
chr171538958915389702-intron-Distal4.7269621.79837HepG2QKI
chr171541707415417136-intron-Distal3.104309.28931HepG2RBFOX2
chr171538810015388183-intron-Distal4.185058.66162HepG2SUGP2
chr171536812015368302-intron-Distal3.731865.14628K562TARDBP
chr171536866115368698-intron-Distal3.691334.59124HepG2FUBP3
chr171536787215367998-intron-Distal5.9643812.78069K562EIF4G2
chr171537542915375479-intron-Distal5.540868.04631HepG2HNRNPL
chr171537960415379714-intron-Distal4.963266.10900HepG2HNRNPL
chr171536849315368627-intron-Distal5.777879.27187HepG2FUBP3
chr171541957415419635-intron-Distal,intron-Proximal4.171514.12666HepG2HNRNPK
chr171538708015387138-intron-Distal3.224213.34056HepG2MATR3
chr171543182115431855-intron-Distal3.633875.12612HepG2HNRNPL
chr171544316915443248-intron-Distal4.139313.64484HepG2HNRNPC
chr171541951615419579-intron-Distal4.7140526.28273HepG2QKI
chr171541958715419672-intron-Distal,intron-Proximal4.4407219.44933K562QKI
chr171542732515427440-intron-Distal4.444864.65580K562GTF2F1
chr171541952715419587-intron-Distal3.905884.91563K562QKI
chr171539368015393804-intron-Distal3.848693.22483K562SAFB2
chr171538754215387570-intron-Distal3.400983.35050HepG2SUGP2
chr171544019115440250-intron-Distal,intron-Proximal3.742495.14864K562KHSRP
chr171539685015396955-intron-Distal4.480817.98928HepG2FAM120A
chr171544729215447361-intron-Distal3.658265.54651HepG2SUGP2
chr171535983215359905-intron-Distal3.868703.34609K562TARDBP
chr171541126015411351-intron-Distal4.496177.80895K562QKI
chr171538682415386877-intron-Distal4.8346814.03469HepG2HNRNPM
chr171537291715373016-intron-Distal4.170853.65854HepG2RBFOX2
chr171540732115407371-intron-Distal4.2655312.69629HepG2RBFOX2
chr171537109615371254-intron-Distal4.571564.92524K562TARDBP
chr171544019115440247-intron-Distal,intron-Proximal3.135346.96146HepG2KHSRP
chr171536862415368740-intron-Distal5.6259512.26573HepG2DKC1
chr171536787215367956-intron-Distal4.116323.31824HepG2TIAL1
chr171540713615407260-intron-Distal3.891597.34197K562HNRNPK
chr171541998615420036-intron-Distal,intron-Proximal4.119873.06084HepG2HNRNPK
chr171543763215437700-intron-Distal3.694063.26999K562KHSRP
chr171539686615396958-intron-Distal3.979594.02670HepG2BCCIP
chr171542733215427390-intron-Distal3.3054514.52431K562AGGF1
chr171536891315368993-intron-Distal3.393536.11924HepG2FUBP3
chr171540737115407420-intron-Distal3.063045.11683HepG2RBFOX2
chr171538806615388160-intron-Distal3.973259.26703HepG2MATR3
chr171541132615411386-intron-Distal4.4231614.32625HepG2QKI
chr171540108215401209-intron-Distal3.668153.00349HepG2ILF3
chr171540715215407259-intron-Distal4.0383616.25435HepG2HNRNPK
chr171536842415368547-intron-Distal6.6444423.58874HepG2DKC1
chr171538859215388661-intron-Distal4.242218.56181HepG2SUGP2
chr171540727815407298-intron-Distal4.251084.17531HepG2RBFOX2
chr171537966515379722-intron-Distal4.037523.50357HepG2QKI
chr171538798115388027-intron-Distal3.296253.69184HepG2SUGP2
chr171542738415427465-intron-Distal3.5115139.11315HepG2HNRNPL
chr171536785715367948-intron-Distal3.653967.20706HepG2CSTF2T
chr171543185515431882-intron-Distal3.534213.77546HepG2HNRNPL
chr171538845715388510-intron-Distal3.622295.56133HepG2SUGP2
chr171538826215388308-intron-Distal3.681925.78794HepG2SUGP2
chr171541123015411326-intron-Distal5.8000234.60374HepG2QKI
chr171537957915379665-intron-Distal3.496284.23286HepG2QKI
chr171541957915419685-intron-Distal,intron-Proximal4.9107560.12007HepG2QKI
chr171539829015398387-intron-Distal3.567517.60928HepG2PCBP2
chr171544185915441910-intron-Distal4.253013.64484HepG2HNRNPC
chr171534352115343573-3'-UTR,CDS,intron-Distal,intron-Proximal3.650844.51739HepG2BCLAF1
chr171536828915368320-intron-Distal4.483813.83835HepG2FUBP3
chr171541968615419717-intron-Distal,intron-Proximal5.082247.37733HepG2TIAL1
chr171541680315416899-intron-Distal3.153313.14580K562ILF3
chr171539390515393955-intron-Distal4.706664.79708HepG2U2AF2
chr171543821515438272-intron-Distal3.336793.45912HepG2HNRNPC
chr171541258215412677-intron-Distal3.099555.12480HepG2HNRNPK
chr171541298915413042-intron-Distal3.916626.35518HepG2HNRNPC
chr171536931315369407-intron-Distal4.061196.08987HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TVP23C is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TVP23C is not available on ENCORE database.

  • 41 RBPs can affect the levels of TVP23C.  








The Knockdown/knockout RNA-Seq assay for TVP23C is not available on ENCORE database.





41 RBPs can affect the gene expression of TVP23C :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TVP23CENSG00000175106.12121.63410202.99880-0.738904.244003.52130HepG2ACO1
TVP23CENSG00000175106.12101.82960166.43470-0.708802.593201.58610HepG2AKAP8
TVP23CENSG00000175106.1255.36780116.16020-1.069003.876803.18080HepG2BOP1
TVP23CENSG00000175106.12105.59400203.00760-0.943006.276005.34730HepG2CKAP4
TVP23CENSG00000175106.1275.73950148.26500-0.969103.283102.44370HepG2CNOT7
TVP23CENSG00000175106.12165.24010106.636900.631802.103501.49460HepG2CPSF6
TVP23CENSG00000175106.12110.17060187.76920-0.769203.216802.32230HepG2DDX19B
TVP23CENSG00000175106.1277.91990120.04090-0.623501.924301.32640HepG2DNAJC21
TVP23CENSG00000175106.12253.82760143.484800.822904.851103.79090HepG2EIF4G2
TVP23CENSG00000175106.12118.53490198.41310-0.743203.659902.70000HepG2EWSR1
TVP23CENSG00000175106.12126.17700185.59930-0.556702.604701.61370HepG2KIF1C
TVP23CENSG00000175106.12228.83560152.557200.584903.445102.79820HepG2PUM1
TVP23CENSG00000175106.12145.27700206.77520-0.509301.897201.36750HepG2PUS1
TVP23CENSG00000175106.12260.88880159.079900.713603.904303.11450HepG2RBM25
TVP23CENSG00000175106.1272.16950134.86380-0.902003.054402.06420HepG2RPS10
TVP23CENSG00000175106.1294.20160163.85820-0.798602.876601.77910HepG2RPS5
TVP23CENSG00000175106.12177.11630119.250700.570602.478801.86310HepG2SAFB2
TVP23CENSG00000175106.1290.08180214.13940-1.249208.069106.87430HepG2SF3A3
TVP23CENSG00000175106.12261.99440137.805000.926805.724804.77660HepG2SLBP
TVP23CENSG00000175106.1247.30920129.38010-1.451407.229805.39570HepG2STIP1
TVP23CENSG00000175106.1267.59910130.15470-0.945202.675902.18260HepG2TIAL1
TVP23CENSG00000175106.1260.21620156.20990-1.375303.294102.21540HepG2U2AF2
TVP23CENSG00000175106.12117.19000183.34950-0.645702.835202.23240HepG2UTP3
TVP23CENSG00000175106.1277.62940133.25100-0.779502.688901.61120HepG2XPO5
TVP23CENSG00000175106.1291.65820150.97710-0.720002.457301.46000HepG2XRCC6
TVP23CENSG00000175106.12127.8028081.567600.647802.329501.70570HepG2ZC3H8
TVP23CENSG00000175106.12156.57820208.86340-0.415701.821001.35190HepG2ZNF622
TVP23CENSG00000175106.1299.56150188.26580-0.919103.315002.68430K562AQR
TVP23CENSG00000175106.12109.18980156.24870-0.517001.881901.32500K562DDX47
TVP23CENSG00000175106.12135.4822070.503600.942204.021903.17940K562EIF2S2
TVP23CENSG00000175106.1293.03350145.22280-0.642402.122301.41810K562EIF3G
TVP23CENSG00000175106.1246.69630143.89900-1.623709.393408.35610K562FXR1
TVP23CENSG00000175106.1288.60560141.22360-0.672502.432301.44930K562HNRNPL
TVP23CENSG00000175106.12194.28650119.956100.695603.346102.36580K562HNRNPU
TVP23CENSG00000175106.12158.1195083.833100.915303.866402.92880K562HSPD1
TVP23CENSG00000175106.12141.20690218.71240-0.631203.270702.34900K562MAGOH
TVP23CENSG00000175106.1242.7875082.67970-0.950302.292801.60750K562PRPF8
TVP23CENSG00000175106.12117.30040213.59440-0.864703.763602.81630K562PUF60
TVP23CENSG00000175106.12147.23330214.42330-0.542402.355501.36460K562NELFE
TVP23CENSG00000175106.12141.10320208.31200-0.562002.332301.67590K562SRSF1
TVP23CENSG00000175106.1299.57510210.82760-1.082206.671205.53130K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TVP23C is not available on ENCORE database.





2 RBPs can affect the splicing of TVP23C :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXETVP23CENSG00000175106.12chr17-15343524153435991539149415391648153412041534151715443746154438750.595000.000350.003351includedHepG2U2AF2
MXETVP23CENSG00000175106.12chr17-15343524153435991540641115406546153412041534151715443746154438750.403000.000330.008301includedHepG2HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TVP23C is not avaliable on ENCORE database.