CSTF2T

General Information

Gene Name       : CSTF2T
Gene ID             : ENSG00000177613.8
Essential Gene : No

Functions

Localization(RBPImage: CSTF2T)

Domains (AlphaFold: CSTF2T)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CSTF2TENSG00000177613.815.7616.2316.00ENCSR000AEF
HepG2CSTF2TENSG00000177613.83.915.094.50ENCSR985KAT
K562CSTF2TENSG00000177613.821.3121.8221.56ENCSR000AEO

Assays

4 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 275ENCSR840DRDCSTF2TK562ReleasedENCAB005DBKENCSR722LZB  
eCLIPeCLIP: 292ENCSR919HSECSTF2THepG2ReleasedENCAB005DBKENCSR391GLS  
knockdown followed by RNA-seq CSTF2T-BGKLV13-K562ENCSR286OKWCSTF2TK562ReleasedENCSR815CVQ   shRNAKD% = 79.2,74.0
knockdown followed by RNA-seq CSTF2T-BGHLV14-HepG2ENCSR914WQVCSTF2THepG2ReleasedENCSR003EKR   shRNAKD% = 85.3,91.7






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
CSTF2T275K562ENCSR840DRDENCSR722LZBENCAB005DBKA301-487A1ReleasedENCODE3
CSTF2T292HepG2ENCSR919HSEENCSR391GLSENCAB005DBKA301-487A3ReleasedENCODE3


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
CSTF2TENCAB005DBKA301-487A3Released, ENCODE3Released, ENCODE3BGHLV14-5, Released, ENCODE3BGKLV13-43, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
CSTF2TK562shRNABGKLV11-5,BGKLV11-6BGKLV11-1,BGKLV11-2NotSatisfiedENCODE3
CSTF2TK562shRNAENCSR286OKWENCSR815CVQCSTF2T_BGKLV13_43,CSTF2T_BGKLV13_44NT_BGKLV13_1,NT_BGKLV13_279.2,74.0ReleasedENCODE3
CSTF2TK562shRNABGKLV40-3,BGKLV40-4BGKLV40-1,BGKLV40-258.0,61.0OthersENCODE4
CSTF2THepG2shRNAENCSR914WQVENCSR003EKRCSTF2T_BGHLV14-5,CSTF2T_BGHLV14-6NT_BGHLV14-1_1,NT_BGHLV14-2_185.3,91.7ReleasedENCODE3
CSTF2THepG2shRNABGHLV39-3,BGHLV39-4BGHLV39-1,BGHLV39-228.0,17.0OthersENCODE4
CSTF2T293TshRNABG293LV01-11,BG293LV01-12BG293LV01-1,BG293LV01-2NotSatisfiedENCORE2
CSTF2T293TshRNACSTF2T-BG293LV02-11,CSTF2T-BG293LV02-12NT-BG293LV02-1,NT-BG293LV02-2,RevokedENCORE2
CSTF2T293TshRNACSTF2T-BG293LV06-97B,CSTF2T-BG293LV06-98BNT-BG293LV06-1B,NT-BG293LV06-2B,SequencedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    CSTF2T: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Cytoplasm
  • Compartment/Organelle
  • Mitochondria
  • Cytoskeleton
  • Microtubule












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    CSTF2TProduct_ID: A301-487A
    Lot_ID: 3
    Source: Bethyl Labs
    Target Name: CSTF2T-human    		 HepG2_Bethyl_A301-487A_3_CSTF2T.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using CSTF2T specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 10% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-CSTF2T antibody (lanes under 'CSTF2T').
    		 CSTF2T_Secondary_Western.png<br>Caption: Western blot following shRNA against CSTF2T in K562 and HepG2 whole cell lysate using CSTF2T specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against CSTF2T. Lanes 5-7 follow the same pattern, but in HepG2. CSTF2T protein appears as the green band, Tubulin serves as a control and appears in red.
    		 K562_BETHYL_A301487A_1_CSTF2T.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using CSTF2T specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 10% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-CSTF2T antibody (lanes under 'CSTF2T').
    		 CSTF2T_Secondary_Western.png<br>Caption: Western blot following shRNA against CSTF2T in K562 and HepG2 whole cell lysate using CSTF2T specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against CSTF2T. Lanes 5-7 follow the same pattern, but in HepG2. CSTF2T protein appears as the green band, Tubulin serves as a control and appears in red.








    RNA Targets
    • CSTF2T protein binds to 30,802 RNA regions.  





    Proteins bound to RNA
    • CSTF2T RNA is bound by 6 proteins.  






    CSTF2T protein has 30,802 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 30,802 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    CSTF2Tchr13113705685113705733+3.355336.05986HepG2MCF2Lintron-Distal
    CSTF2Tchr2161349527161349655-3.9027911.81310HepG2RBMS1intron-Distal,intron-Proximal
    CSTF2Tchr139200081492000864+4.4562742.44720K562MIR17HGintron-Distal
    CSTF2Tchr6151711844151711901-4.3944810.54254HepG2ZBTB2intron-Distal
    CSTF2Tchr1921461372146185-4.166084.61649HepG2AP3D1intron-Distal
    CSTF2Tchr187767471677674751-4.4823917.30364HepG2PQLC1intron-Distal
    CSTF2Tchr11612142612188+3.534567.20706HepG2PHRF13'-UTR
    CSTF2Tchr7158183967158184025-5.378994.86859HepG2PTPRN2intron-Distal
    CSTF2Tchr13113380461113380497+3.745363.14687K562ATP11Aintron-Distal
    CSTF2Tchr9136773491136773538-4.7468911.54805HepG2VAV2intron-Distal
    CSTF2Tchr187766420777664287-4.2969314.41467HepG2PQLC1intron-Distal,intron-Proximal
    CSTF2Tchr9136778310136778352-4.7994710.78166HepG2VAV2intron-Distal
    CSTF2Tchr162399094423991015+4.8193112.73892K562PRKCBintron-Distal
    CSTF2Tchr2172379249172379338+5.0473425.30617K562CYBRD1intron-Distal,intron-Proximal
    CSTF2Tchr126920225469202356+3.592457.44912HepG2MDM25'-UTR,CDS,intron-Proximal
    CSTF2Tchr116386563263865688-3.812149.82247HepG2MACROD1intron-Distal
    CSTF2TchrX4119449541194588+3.0564511.74136K562DDX3Xintron-Distal
    CSTF2Tchr427963732796488+5.9989433.49065HepG2SH3BP2intron-Distal
    CSTF2Tchr168871649988716584-3.4100615.35354HepG2CYBAintron-Distal
    CSTF2Tchr154034558040345610+3.821163.37414K562SRP14-AS1intron-Distal
    CSTF2Tchr13113617658113617705+3.866353.16310HepG2MCF2Lintron-Distal
    CSTF2Tchr168856532988565389+3.6411326.34714HepG2ZFPM1intron-Distal
    CSTF2Tchr177540559175405633+3.409449.30094HepG2SEPT9intron-Distal
    CSTF2Tchr63664671436646771+3.5017716.06154HepG2CDKN1A5'-UTR,intron-Distal,intron-Proximal
    CSTF2Tchr116119712161197209-3.5807412.79738HepG2CPSF75'-UTR,intron-Distal,intron-Proximal
    CSTF2Tchr11118781233118781304-3.351866.89356HepG2BCL9L5'-UTR,intron-Distal
    CSTF2Tchr26176515261765181-4.6036841.61937K562XPO15'-UTR,intron-Distal
    CSTF2Tchr168854477588544818+3.6432013.27329HepG2ZFPM1intron-Distal
    CSTF2Tchr168853433688534355+5.5240311.53530HepG2ZFPM1intron-Distal
    CSTF2Tchr1957910957939+3.115175.21772HepG2AGRNintron-Proximal
    CSTF2Tchr1614268761426916-4.5876611.61536K562UNKLintron-Distal
    CSTF2Tchr13114559256114559297-3.362393.25653K562GAS6intron-Distal
    CSTF2Tchr1129346772934769+4.7225911.63209K562SLC22A18intron-Distal
    CSTF2Tchr134871343487195-4.5765910.30165HepG2MEGF6intron-Distal
    CSTF2Tchr7157941690157941755-4.571814.37279HepG2PTPRN2intron-Distal
    CSTF2Tchr194532339845323460+3.1217023.78864HepG2BCAM3'-UTR,intron-Distal
    CSTF2Tchr116384483363844885-3.557286.71496HepG2MACROD1intron-Distal
    CSTF2Tchr19803448803489+3.377208.76879HepG2PTBP1intron-Distal,intron-Proximal
    CSTF2Tchr168566912185669189+3.8400811.34515HepG2GSE1intron-Distal
    CSTF2Tchr412418651241924-3.5894121.41437HepG2CTBP1intron-Distal
    CSTF2Tchr9136752865136752926-4.9601616.35064HepG2VAV2intron-Distal
    CSTF2Tchr168568631385686370+4.6055316.33760K562GSE1intron-Distal
    CSTF2Tchr11647996016480005-4.221594.36133HepG2EPHA2intron-Distal
    CSTF2Tchr12791999327920053-3.519997.20706HepG2AHDC1intron-Distal
    CSTF2Tchr13114756364114756403-3.998543.80512K562RASA3intron-Distal
    CSTF2Tchr1117760521776091-4.302594.92128HepG2RP11-295K3.1, CTSDintron-Distal,intron-Proximal
    CSTF2Tchr183207352932073617+3.797607.56410HepG2DTNAintron-Distal,intron-Proximal
    CSTF2Tchr9137258013137258027+5.193798.98373HepG2RXRAintron-Distal
    CSTF2Tchr108100293781002983+4.181257.72301HepG2ZMIZ1intron-Distal
    CSTF2Tchr177543230375432333+3.847489.58042HepG2SEPT9intron-Distal
    CSTF2Tchr223795816537958213+3.064708.23490HepG2CDC42EP1intron-Distal
    CSTF2Tchr7158156477158156533-5.151514.36133HepG2PTPRN2intron-Distal
    CSTF2Tchr1918829551883010-3.829446.10842HepG2ABHD17A5'-UTR,intron-Distal
    CSTF2Tchr9139247003139247065+4.1337912.60375K562GPSM1intron-Distal
    CSTF2Tchr112566651256721-4.723824.86859HepG2CPSF3Lintron-Distal
    CSTF2Tchr214683973746839794+4.1731113.05686HepG2COL18A1intron-Distal
    CSTF2Tchr168852832588528375+4.4734116.71068HepG2ZFPM1intron-Distal
    CSTF2Tchr10135163718135163751-4.366354.36133HepG2RP11-122K13.7intron-Distal
    CSTF2Tchr9139248876139248935+4.363699.24802K562GPSM1intron-Distal
    CSTF2Tchr7604254604296-3.306564.37279HepG2PRKAR1Bintron-Distal
    CSTF2Tchr13113422216113422276+4.8460315.82229HepG2ATP11Aintron-Distal
    CSTF2Tchr1911551721155203-4.721047.19649HepG2SBNO2intron-Distal,intron-Proximal
    CSTF2Tchr75085999450860042-3.475083.99385K562GRB10intron-Distal
    CSTF2Tchr9140088707140088769-3.408795.45050HepG2TPRNintron-Distal
    CSTF2Tchr1962781246278194-4.434115.60609HepG2MLLT1intron-Distal
    CSTF2Tchr221980361919803694-3.206423.62708K562GNB1Lintron-Distal
    CSTF2Tchr1621746162174694-3.628927.01804HepG2PKD1intron-Distal
    CSTF2Tchr424048192404891-3.932093.59342K562ZFYVE28intron-Distal
    CSTF2Tchr168173822681738373+5.1690012.55969HepG2CMIPintron-Distal
    CSTF2Tchr194776031047760384+5.135449.42220K562CCDC9intron-Distal
    CSTF2Tchr206055807960558167-4.5777823.54395HepG2TAF4intron-Distal
    CSTF2Tchr1637670703767171-3.461544.76898K562TRAP1intron-Distal
    CSTF2Tchr171772766017727734-3.4868512.23618HepG2SREBF1intron-Distal
    CSTF2Tchr7150798617150798657+3.909603.70058K562AGAP3intron-Distal
    CSTF2Tchr1117827381782804-3.665254.91684K562CTSD5'-UTR,intron-Distal,intron-Proximal
    CSTF2Tchr168737847487378515-3.024106.53486HepG2FBXO31intron-Distal
    CSTF2Tchr168166084281660938+5.5432913.26784K562CMIPintron-Distal
    CSTF2Tchr134687113468743-3.536805.91153HepG2MEGF6intron-Distal
    CSTF2Tchr6157803558157803637+3.832793.16310HepG2ZDHHC14intron-Distal
    CSTF2Tchr14105157970105158003+3.873603.63902HepG2INF2intron-Distal
    CSTF2Tchr1933647443364793+3.929113.16310HepG2NFICintron-Distal
    CSTF2Tchr8144583066144583111-3.302924.88713HepG2ZC3H3intron-Distal
    CSTF2Tchr168896186988961931-3.437347.08576K562CBFA2T3intron-Distal
    CSTF2Tchr4903871903948-3.566409.01022HepG2GAKintron-Distal
    CSTF2Tchr718975541897596-3.905356.48652HepG2MAD1L1intron-Distal
    CSTF2Tchr11801437818014419+4.3660414.10522HepG2ARHGEF10Lintron-Distal
    CSTF2Tchr203115362631153660-4.095583.80314K562C20orf112intron-Distal
    CSTF2Tchr10103599395103599453-4.559385.40707K562KCNIP2intron-Distal
    CSTF2Tchr10134422106134422168+3.108834.28851HepG2INPP5Aintron-Distal
    CSTF2Tchr7958067958104-4.104623.40229HepG2COX19, ADAP1intron-Distal
    CSTF2Tchr177448992774489973-4.292577.96122HepG2RHBDF2intron-Distal
    CSTF2Tchr224984473449844774-4.081573.70058K562C22orf34intron-Distal
    CSTF2Tchr223202637332026461-3.165187.33857HepG2PISDintron-Distal
    CSTF2Tchr10128594701128594756+3.149874.98353HepG2DOCK1intron-Distal
    CSTF2Tchr3183353864183353919+5.366359.85717HepG2KLHL24intron-Distal,intron-Proximal
    CSTF2Tchr223795686937956921+3.733879.94306HepG2CDC42EP1intron-Distal
    CSTF2Tchr510687541068817-3.136635.46109HepG2SLC12A7intron-Distal
    CSTF2Tchr2239005559239005614+3.741905.08839HepG2UBE2F-SCLY, SCLYintron-Proximal
    CSTF2Tchr168895465788954710-4.7883714.09130K562CBFA2T3intron-Distal
    CSTF2Tchr195018084450180934+4.989938.08715HepG2PRMT15'-UTR,intron-Distal,intron-Proximal




    6 proteins are bound to CSTF2T RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr105345721953457284-3'-UTR4.890147.53406K562TIA1
    chr105345922153459341-5'-UTR,CDS3.709796.20524K562DDX3X
    chr105345756853457625-CDS3.387513.41711K562DROSHA
    chr105345763753457753-CDS4.201188.05385K562DDX6
    chr105345788653457933-CDS3.857873.11168K562ZNF622
    chr105345778553457901-CDS4.478465.87734K562LIN28B
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein CSTF2T and its RNA.



    Diffrential Expression
    • 1,178 differentially expressed genes after Knockdown/Knockout CSTF2T protein.  





    • 49 RBPs can affect the levels of CSTF2T.  







    1,178 differentially expressed genes after Knockdown/Knockout CSTF2T protein :

    Only display 100 entries as example. Please click "View All" button to see all 1,178 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    CASP10ENSG00000003400.10793.15030570.104000.476302.614401.31400HepG2CSTF2T
    TFPIENSG00000003436.1010587.464906989.680400.599005.353203.26590HepG2CSTF2T
    SLC7A2ENSG00000003989.122925.066705156.39280-0.817908.983106.23210HepG2CSTF2T
    ARHGAP33ENSG00000004777.1467.02730162.62140-1.278705.910303.68960HepG2CSTF2T
    DVL2ENSG00000004975.7350.69460600.80220-0.776705.116503.07900HepG2CSTF2T
    POLR2JENSG00000005075.11294.23650455.23750-0.629603.414101.84550HepG2CSTF2T
    ACSM3ENSG00000005187.71473.61710792.558500.894708.770106.04960HepG2CSTF2T
    ASB4ENSG00000005981.8177.6673072.295001.297106.376004.05750HepG2CSTF2T
    GDE1ENSG00000006007.71951.165401333.350100.549203.969402.23410HepG2CSTF2T
    CRLF1ENSG00000006016.61164.399702738.04210-1.233603.044701.59740HepG2CSTF2T
    CX3CL1ENSG00000006210.6985.344501688.42520-0.777004.937202.94640HepG2CSTF2T
    SPATA20ENSG00000006282.15631.72680910.12780-0.526803.037101.59240HepG2CSTF2T
    ALDH3B1ENSG00000006534.1157.01640129.12890-1.179404.500102.62490HepG2CSTF2T
    TEAD3ENSG00000007866.14449.54470641.60680-0.513202.706101.37090HepG2CSTF2T
    PLEKHG6ENSG00000008323.11140.96080227.61880-0.691302.833301.45550HepG2CSTF2T
    ST3GAL1ENSG00000008513.10923.410101340.04600-0.537203.658302.00970HepG2CSTF2T
    IL32ENSG00000008517.122559.910701593.571400.683706.145903.87210HepG2CSTF2T
    MLXIPLENSG00000009950.111042.212402108.72330-1.016703.481001.89050HepG2CSTF2T
    UQCRC1ENSG00000010256.61860.665902678.58100-0.525603.852102.15390HepG2CSTF2T
    NCAPD2ENSG00000010292.82154.412802953.48630-0.455103.164301.67680HepG2CSTF2T
    CLCN6ENSG00000011021.17804.107201226.54130-0.609102.911001.50870HepG2CSTF2T
    TSPAN9ENSG00000011105.7617.50010911.71850-0.562103.539301.92990HepG2CSTF2T
    PTBP1ENSG00000011304.122106.244403337.63310-0.664203.624301.98490HepG2CSTF2T
    QPCTLENSG00000011478.7193.44690342.04510-0.822203.632101.99090HepG2CSTF2T
    MAP4K3ENSG00000011566.102417.875401798.225000.427102.702701.36870HepG2CSTF2T
    CLK1ENSG00000013441.111539.675201047.909900.555003.981502.24510HepG2CSTF2T
    TACC3ENSG00000013810.14444.94800750.88320-0.755005.609003.45750HepG2CSTF2T
    DPEP1ENSG00000015413.542.87830144.82050-1.755906.169203.88830HepG2CSTF2T
    BIDENSG00000015475.14112.15410188.83070-0.751602.906501.50560HepG2CSTF2T
    NPC1L1ENSG00000015520.10354.13720693.39950-0.969403.311501.77890HepG2CSTF2T
    SLC38A5ENSG00000017483.10438.67200937.56610-1.0958011.253908.23260HepG2CSTF2T
    AGPSENSG00000018510.83279.458602390.455800.456103.083301.62380HepG2CSTF2T
    CYP24A1ENSG00000019186.5702.34840263.137401.416308.615405.90480HepG2CSTF2T
    C8BENSG00000021852.8193.38600340.88480-0.817804.601402.69800HepG2CSTF2T
    NCAPH2ENSG00000025770.14211.97120356.40040-0.749603.991102.25060HepG2CSTF2T
    FASENSG00000026103.15248.70540154.658000.685302.924701.51690HepG2CSTF2T
    IFNGR1ENSG00000027697.81980.710901454.741200.445202.817001.44410HepG2CSTF2T
    SLC39A9ENSG00000029364.7784.669001110.24910-0.500703.130701.65570HepG2CSTF2T
    CHPF2ENSG00000033100.10308.38010527.50850-0.774503.755902.07970HepG2CSTF2T
    TMSB10ENSG00000034510.45898.453703824.974600.624805.614303.45770HepG2CSTF2T
    RNF19AENSG00000034677.72073.984101248.608900.732006.655504.25080HepG2CSTF2T
    TIMP2ENSG00000035862.81531.610401079.365300.504803.290501.76770HepG2CSTF2T
    VCANENSG00000038427.113834.570202369.110300.694604.865902.90180HepG2CSTF2T
    PHKA2ENSG00000044446.72272.536103144.94900-0.468703.197001.70070HepG2CSTF2T
    HSPA5ENSG00000044574.715526.7122021687.42170-0.482103.751402.07700HepG2CSTF2T
    CPENSG00000047457.922826.4700030665.53680-0.425903.033701.59060HepG2CSTF2T
    RRM2BENSG00000048392.71290.00720784.150100.718103.865302.16250HepG2CSTF2T
    H6PDENSG00000049239.81288.143101762.13490-0.452002.797201.43340HepG2CSTF2T
    HOMER3ENSG00000051128.1494.41400162.95910-0.787402.782701.42370HepG2CSTF2T
    MSMO1ENSG00000052802.82050.942602955.80200-0.527304.018302.27240HepG2CSTF2T
    AKR7A2ENSG00000053371.8333.46840518.29690-0.636203.672802.02000HepG2CSTF2T
    PHPT1ENSG00000054148.13430.63380748.89220-0.798303.024001.58510HepG2CSTF2T
    PCGF2ENSG00000056661.9672.090701034.20590-0.621804.314702.48370HepG2CSTF2T
    F7ENSG00000057593.9312.50720634.86760-1.022603.309701.77840HepG2CSTF2T
    SLC2A3ENSG00000059804.115707.1734010248.89070-0.844609.849107.01250HepG2CSTF2T
    WNK1ENSG00000060237.123025.839704043.50620-0.418302.700001.36760HepG2CSTF2T
    PTPRUENSG00000060656.15613.428401090.85410-0.830504.342002.50290HepG2CSTF2T
    MRPS24ENSG00000062582.9219.86660347.60480-0.660803.301301.77450HepG2CSTF2T
    VMP1ENSG00000062716.64114.863602869.974200.519703.926502.20750HepG2CSTF2T
    RPL18ENSG00000063177.83188.433104651.17210-0.544702.898201.50160HepG2CSTF2T
    U2AF2ENSG00000063244.81085.359901654.82540-0.608504.245902.42990HepG2CSTF2T
    GPC1ENSG00000063660.442.42530123.66200-1.543403.944802.21680HepG2CSTF2T
    CASP8ENSG00000064012.17965.32470639.921800.593002.684501.35780HepG2CSTF2T
    MEF2BNB-MEF2BENSG00000064489.172.7348029.89010-3.450205.491803.36610HepG2CSTF2T
    CTSAENSG00000064601.122325.149603159.61170-0.442402.934701.52270HepG2CSTF2T
    SLC12A2ENSG00000064651.9404.48320260.362300.635503.278301.75970HepG2CSTF2T
    DGKAENSG00000065357.15299.45130193.627000.628902.740801.39440HepG2CSTF2T
    FAM107BENSG00000065809.9943.52950591.790600.672904.799202.85470HepG2CSTF2T
    PPP2R5AENSG00000066027.7820.51370572.125300.520103.036901.59240HepG2CSTF2T
    LRRC40ENSG00000066557.5650.44830439.712400.564802.756801.40670HepG2CSTF2T
    IDI1ENSG00000067064.61175.970101971.41700-0.745406.959704.49350HepG2CSTF2T
    SP100ENSG00000067066.12572.43860360.863800.665604.106502.33120HepG2CSTF2T
    KLF6ENSG00000067082.102541.686401626.612700.643805.467403.34660HepG2CSTF2T
    COASYENSG00000068120.101476.778402019.33020-0.451402.822401.44850HepG2CSTF2T
    ACSL4ENSG00000068366.158559.1061011324.69750-0.403902.746101.39810HepG2CSTF2T
    MAPK6ENSG00000069956.75379.440203935.758600.450703.161801.67550HepG2CSTF2T
    NDST1ENSG00000070614.101423.109301928.65170-0.438502.719201.37960HepG2CSTF2T
    ASNSENSG00000070669.12580.69170272.206601.093005.075803.05250HepG2CSTF2T
    PTPN21ENSG00000070778.8305.24650162.968700.905305.099703.06630HepG2CSTF2T
    CDC42ENSG00000070831.113960.244302898.825800.450003.027001.58700HepG2CSTF2T
    MAP4K4ENSG00000071054.1114777.8561010827.829400.448603.256601.74290HepG2CSTF2T
    ATP6AP1ENSG00000071553.121274.088101969.04980-0.628005.053403.03600HepG2CSTF2T
    TCF3ENSG00000071564.10483.08110870.31700-0.849305.443403.33490HepG2CSTF2T
    HSD17B10ENSG00000072506.8284.89900424.16800-0.574202.832501.45550HepG2CSTF2T
    MARK2ENSG00000072518.16344.71110506.95180-0.556502.889301.49450HepG2CSTF2T
    EVCENSG00000072840.8387.68900557.82910-0.524902.717201.37960HepG2CSTF2T
    AP1M1ENSG00000072958.4451.51750679.73400-0.590203.511301.90720HepG2CSTF2T
    SCARB1ENSG00000073060.113017.272205777.18090-0.937102.638301.32840HepG2CSTF2T
    MCM2ENSG00000073111.91024.370301679.77200-0.713506.091503.83780HepG2CSTF2T
    LMAN1ENSG00000074695.54767.179406914.82490-0.536604.349802.50320HepG2CSTF2T
    TTC38ENSG00000075234.12788.952401246.79880-0.660205.022103.01050HepG2CSTF2T
    ACTBENSG00000075624.99078.7291013996.49760-0.624503.641801.99730HepG2CSTF2T
    PLD1ENSG00000075651.112224.550401592.009600.482603.285401.76490HepG2CSTF2T
    WDR62ENSG00000075702.12161.44130277.56140-0.781803.756502.07970HepG2CSTF2T
    PTPN23ENSG00000076201.10355.39100619.25920-0.801102.604901.30680HepG2CSTF2T
    SLC46A1ENSG00000076351.8669.31160921.49210-0.461302.612701.31260HepG2CSTF2T
    SPAG5ENSG00000076382.121035.512201404.99390-0.440202.696301.36560HepG2CSTF2T
    ICAM3ENSG00000076662.548.33130109.56120-1.180703.952302.22100HepG2CSTF2T
    CAMSAP3ENSG00000076826.5179.32540420.10620-1.228203.516901.91060HepG2CSTF2T
    XAB2ENSG00000076924.7207.22050391.15560-0.916602.675001.35220HepG2CSTF2T
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    49 RBPs can affect the gene expression of CSTF2T :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    CSTF2TENSG00000177613.7266.74710175.446800.604302.922601.82610HepG2AATF
    CSTF2TENSG00000177613.7540.31970315.750200.774905.205704.50520HepG2AKAP1
    CSTF2TENSG00000177613.7266.69680194.702300.453802.346801.63420HepG2AKAP8L
    CSTF2TENSG00000177613.7173.59520253.53100-0.546402.462401.89400HepG2BOP1
    CSTF2TENSG00000177613.7253.82530193.749700.389501.877601.31520HepG2CKAP4
    CSTF2TENSG00000177613.7261.98780152.334600.782203.220702.39070HepG2CNOT7
    CSTF2TENSG00000177613.757.86700179.59970-1.634009.445006.66100HepG2CSTF2T
    CSTF2TENSG00000177613.7265.39590179.229600.566203.796302.83840HepG2DDX19B
    CSTF2TENSG00000177613.7130.46260207.99840-0.672903.221001.97540HepG2DDX1
    CSTF2TENSG00000177613.7271.49710193.658700.487302.158801.55140HepG2DDX21
    CSTF2TENSG00000177613.7182.60050259.82910-0.508901.892801.37240HepG2DDX6
    CSTF2TENSG00000177613.7324.64470185.406100.808105.749004.83690HepG2DKC1
    CSTF2TENSG00000177613.7161.03000274.77480-0.770904.499503.47660HepG2EIF4G2
    CSTF2TENSG00000177613.7308.17520205.912700.581602.960202.29380HepG2HNRNPA1
    CSTF2TENSG00000177613.7451.79500272.006800.731904.390903.33780HepG2LARP4
    CSTF2TENSG00000177613.7311.86470197.389300.659804.975404.19320HepG2PUS1
    CSTF2TENSG00000177613.7236.14020320.17150-0.439202.083101.48050HepG2RPLP0
    CSTF2TENSG00000177613.7397.14170289.716800.454902.936402.45290HepG2SRSF1
    CSTF2TENSG00000177613.7471.22980303.354000.635306.282205.56710HepG2SSB
    CSTF2TENSG00000177613.7325.35080201.217100.693102.404301.40900HepG2TBRG4
    CSTF2TENSG00000177613.7148.59380223.05140-0.586003.252602.65250HepG2TRIM56
    CSTF2TENSG00000177613.7123.74800198.89140-0.684603.610202.85920HepG2ZC3H8
    CSTF2TENSG00000177613.7914.451501484.96490-0.6995014.7357013.53330K562AGGF1
    CSTF2TENSG00000177613.71016.696501545.16000-0.603907.492106.37230K562AKAP8L
    CSTF2TENSG00000177613.72934.546802234.388900.393203.922303.24740K562AQR
    CSTF2TENSG00000177613.71230.046701524.03030-0.309204.008102.83650K562BCLAF1
    CSTF2TENSG00000177613.71315.574501569.78300-0.254901.974701.30360K562CPSF6
    CSTF2TENSG00000177613.7851.160801156.20420-0.441904.949803.47430K562CSTF2
    CSTF2TENSG00000177613.7347.690001215.51040-1.8057020.1323015.76160K562CSTF2T
    CSTF2TENSG00000177613.71015.176401336.22410-0.396405.384603.53420K562DDX27
    CSTF2TENSG00000177613.7660.62000917.87280-0.474504.642703.24290K562DDX3X
    CSTF2TENSG00000177613.71801.046502246.24460-0.318703.684102.94630K562DDX47
    CSTF2TENSG00000177613.71417.246101662.78640-0.230502.244601.46650K562DKC1
    CSTF2TENSG00000177613.71309.45550958.913100.449404.148103.14460K562EIF4A3
    CSTF2TENSG00000177613.7967.378101228.78360-0.345102.978401.31920K562FASTKD2
    CSTF2TENSG00000177613.7809.845901015.41230-0.326302.696801.37680K562FUS
    CSTF2TENSG00000177613.71453.33250997.222900.543308.556807.56390K562FXR1
    CSTF2TENSG00000177613.7940.779501493.22430-0.666506.747105.19640K562HNRNPM
    CSTF2TENSG00000177613.71773.715502461.46490-0.472705.307004.22290K562HSPD1
    CSTF2TENSG00000177613.71113.596301639.84760-0.558306.946705.49820K562KIF1C
    CSTF2TENSG00000177613.71186.585101569.69980-0.403703.702302.39360K562MAK16
    CSTF2TENSG00000177613.7872.667601287.62580-0.561203.970502.85920K562NAA15
    CSTF2TENSG00000177613.71537.604701803.98210-0.230502.678701.94290K562NSUN2
    CSTF2TENSG00000177613.7729.139301396.26510-0.937305.282203.79160K562PABPN1
    CSTF2TENSG00000177613.71619.507502060.87970-0.347702.950402.09910K562PPIG
    CSTF2TENSG00000177613.7684.672601532.47020-1.1624021.6394020.14640K562PUS1
    CSTF2TENSG00000177613.7896.185801493.08220-0.7364011.9393010.70960K562RBM15
    CSTF2TENSG00000177613.7993.018101303.12740-0.392102.284701.54550K562RPS19
    CSTF2TENSG00000177613.7903.765101466.32060-0.698202.848801.59860K562SNRNP200
    CSTF2TENSG00000177613.71610.547401301.035900.307802.940602.09270K562SYNCRIP
    CSTF2TENSG00000177613.71832.464502161.49460-0.238203.028601.69880K562TROVE2
    CSTF2TENSG00000177613.71032.783501310.96220-0.344102.247001.33790K562UCHL5
    CSTF2TENSG00000177613.71188.488401636.72930-0.461705.445404.19770K562WDR3
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    47 alternative splicing events after Knockdown/Knockout CSTF2T protein :

    Only display 100 entries as example. Please click "View All" button to see all 47 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEALDH3A2ENSG00000072210.14chr17+1957646319576588195750331957526919578808195788120.121000.000010.07532includedHepG2CSTF2T
    SEFLNBENSG00000136068.10chr3+5812758458127656581240085812425658128376581284790.150000.000010.07532includedHepG2CSTF2T
    SEBPIFB2ENSG00000078898.6chr20+3159600531596184315954053159556631596346315964890.238000.000000.03058includedHepG2CSTF2T
    SECPNE1ENSG00000214078.7chr20-3424312334243266342207163422084534252723342528040.283000.000000.03058includedHepG2CSTF2T
    SETNKSENSG00000173273.11chr8+962987896299339627640962777296341599634546-0.186000.000010.07532excludedHepG2CSTF2T
    MXEBAG6ENSG00000204463.8chr6-31612083316121913161230131612379316118583161197131612722316129750.126000.000090.039551includedHepG2CSTF2T
    MXECASP10ENSG00000003400.10chr2+2020504932020508472020577062020578422020478912020480312020605642020606710.323000.000150.054971includedHepG2CSTF2T
    MXEFARP1ENSG00000152767.11chr13+99076825990769049908329699083534990641549906428899087829990879600.127000.000370.087071includedHepG2CSTF2T
    MXERPS3ENSG00000149273.10chr11+75113395751134237511506375115251751126837511277775115715751159120.124000.000070.036751includedHepG2CSTF2T
    MXESERPINF2ENSG00000167711.9chr17+165189116520341655879165608416506021650806165741516585590.060000.000080.037931includedHepG2CSTF2T
    MXESLC38A9ENSG00000177058.7chr5-54968390549685235499367354993820549655855496570755007279550073270.360000.000480.097961includedHepG2CSTF2T
    MXEZC3H18ENSG00000158545.11chr16+88675341886754598867767588677944886661988866635688688604886887960.177000.000020.020701includedHepG2CSTF2T
    MXEASGR1ENSG00000141505.7chr17-708052870806457081812708190170802997080395708250870828830.060000.000290.080121includedHepG2CSTF2T
    MXEMAP4K4ENSG00000071054.11chr2+1024724381024726001024754571024755441024605621024607731024761971024763260.058000.000060.036041includedHepG2CSTF2T
    MXEMAP4K4ENSG00000071054.11chr2+1024724381024726001024754571024755441024605621024607731024761041024763260.065000.000270.080121includedHepG2CSTF2T
    MXEUBE2G1ENSG00000132388.8chr17-418609241862164192524419270341725534175811420001142001090.202000.000200.070631includedHepG2CSTF2T
    MXECENPNENSG00000166451.9chr16+8105620181056303810583198105838381053704810538818106013081060243-0.317000.000140.054972includedHepG2CSTF2T
    MXEECI2ENSG00000198721.8chr6-41175414117685411941941195094115940411626341254834125604-0.111000.000430.091392includedHepG2CSTF2T
    MXETYMSENSG00000176890.11chr18+670691670867671379671451669071669173672859673578-0.223000.000000.000972includedHepG2CSTF2T
    MXETCEA3ENSG00000204219.5chr1-2371083823710910237137652371391223707553237079672372037123720526-0.134000.000400.089982includedHepG2CSTF2T
    MXEITIH2ENSG00000151655.13chr10+77805837780721778510877852227776884777705477860447786243-0.123000.000000.000002includedHepG2CSTF2T
    MXELSM14AENSG00000257103.4chr19+3469983334699956347060283470620534687538346876683470650034706566-0.130000.000340.087072includedHepG2CSTF2T
    MXERPS12ENSG00000112306.7chr6+133136110133136227133137599133137702133135870133135921133138098133138200-0.107000.000020.020702includedHepG2CSTF2T
    MXEUBXN2AENSG00000173960.8chr2+2418117024181225241941452419428424163288241635182419983824199945-0.355000.000050.036042includedHepG2CSTF2T
    MXEARFGEF2ENSG00000124198.8chr20+4763958747639718476418494764201847635420476355354764506647645205-0.171000.000360.087072includedHepG2CSTF2T
    MXEHSDL2ENSG00000119471.10chr9+115171186115171301115179120115179224115167903115168002115181139115181238-0.159000.000270.080122includedHepG2CSTF2T
    MXESNRNP70ENSG00000104852.10chr19+4958966149589818495935474959361049588679495888934959372249593777-0.168000.000000.000002includedHepG2CSTF2T
    MXEARIH2ENSG00000177479.15chr3+48960180489602444896489448965246489562534895643148999044489991120.187000.000240.090141includedK562CSTF2T
    MXEARIH2ENSG00000177479.15chr3+48960180489602444899904448999112489562684895643149002351490024150.136000.000010.013461includedK562CSTF2T
    MXEST6GALNAC1ENSG00000070526.10chr17-74622370746224747462273274622871746220877462217774623148746233200.180000.000150.068091includedK562CSTF2T
    MXEHNRNPCENSG00000092199.13chr14-21704531217046192173075921730927217021112170238821731469217314950.383000.000130.068091includedK562CSTF2T
    MXELDLRENSG00000130164.7chr19+1121089811211021112133391121346211200037112002911121589511216276-0.167000.000330.098042includedK562CSTF2T
    MXEKIAA0907ENSG00000132680.6chr1-155896466155896630155896894155896947155895422155895634155899086155899166-0.146000.000140.068092includedK562CSTF2T
    MXESDHCENSG00000143252.10chr1+161293403161293460161298185161298287161284170161284215161310383161310445-0.111000.000000.008422includedK562CSTF2T
    MXEHN1LENSG00000206053.8chr16+17354391735588174184317419861728256172835717478121747861-0.123000.000330.098042includedK562CSTF2T
    MXEAFMIDENSG00000183077.11chr17+7618705076187141761985797619868476183397761835147619878376198832-0.122000.000340.098042includedK562CSTF2T
    MXEPSMD4ENSG00000159352.11chr1+151234636151234777151236389151236504151227184151227284151237307151237394-0.106000.000290.098042includedK562CSTF2T
    MXEFAM178BENSG00000168754.9chr2-9756835697568444975869019758699997559662975597889758721497587391-0.232000.000330.098042includedK562CSTF2T
    MXEVMP1ENSG00000062716.6chr17+5780878157808883578126985781283457784825577851095781481357814904-0.123000.000060.044222includedK562CSTF2T
    MXEDUS4LENSG00000105865.6chr7+107205032107205121107207494107207631107204424107204504107211589107211711-0.196000.000170.069672includedK562CSTF2T
    MXERPS12ENSG00000112306.7chr6+133136110133136227133137599133137702133135870133135921133138098133138200-0.100000.000010.013462includedK562CSTF2T
    MXEPRMT1ENSG00000126457.16chr19+5018374350183845501851665018532250180505501805735018545250185516-0.100000.000080.055882includedK562CSTF2T
    MXEATP5C1ENSG00000165629.15chr10+78442327844388784472078448177841989784205478489367848973-0.089000.000240.090142includedK562CSTF2T
    MXERPL27ENSG00000131469.8chr17+4115076541150848411519494115211941150450411504884115468941154800-0.118000.000000.002352includedK562CSTF2T
    MXELDHAENSG00000134333.9chr11+1841836518418515184223831842255718416109184161831842438618424560-0.065000.000060.044222includedK562CSTF2T
    MXERPL18AENSG00000105640.8chr19+1797210117972281179729021797303217970684179707831797372617973836-0.097000.000150.068092includedK562CSTF2T
    MXEVEGFAENSG00000112715.16chr6+4374846843748540437496924374978943746625437466554375227743752299-0.161000.000110.066262includedK562CSTF2T






    No RBPs affect the alternative splcing events of CSTF2T on ENCORE database.





    No autoregularoty alternative splicing events between protein CSTF2T and its RNA.