ZC3H18

General Information

Gene Name : ZC3H18
Gene ID : ENSG00000158545.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ZC3H18)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ZC3H18	ENSG00000158545.15	9.31	19.71	14.51	ENCSR000AEF
HepG2	ZC3H18	ENSG00000158545.15	42.79	27.54	35.16	ENCSR985KAT
K562	ZC3H18	ENSG00000158545.15	47.19	40.82	44.00	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	ZC3H18-BGRSLV02-RS293		ZC3H18	Ribo-STAMP-293T	Released			shRNA	KD% = ,
RNA Bind-n-Seq	RBNS: ZC3H18	ENCSR614KXG	ZC3H18	cell-free sample	Released		ENCSR429WJF

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
ZC3H18	Ribo-STAMP-293T	shRNA			ZC3H18-BGRSLV02-65,ZC3H18-BGRSLV02-66	NT-BGRSLV02-1,NT-BGRSLV02-2	,	Released	ENCORE2
ZC3H18	293T	shRNA			BG293LV02-51,BG293LV02-52	BG293LV02-1,BG293LV02-2		NotSatisfied	ENCORE2

RNA Bind-n-Seqn

GeneName	gene_aliases	Status	Project	Note
ZC3H18	ZC3H18		Released	ENCODE4

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ZC3H18 is not avaliable on ENCORE database.

The binding motifs of ZC3H18

Proteins bound to RNA

ZC3H18 RNA is bound by 34 proteins.

CanvasJS.com

eCLIP assay for ZC3H18 is not avaliable on ENCORE database.

34 proteins are bound to ZC3H18 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	88690368	88690456	+	CDS	6.22703	16.86099	HepG2	PCBP2
chr16	88697932	88698063	+	3'-UTR,intron-Distal,intron-Proximal	4.68090	15.49644	K562	DDX55
chr16	88643654	88643761	+	CDS	4.16394	14.65767	K562	UCHL5
chr16	88689721	88689800	+	CDS,intron-Proximal	4.13688	13.85817	HepG2	PRPF8
chr16	88697935	88698017	+	3'-UTR,intron-Distal,intron-Proximal	3.83217	12.25535	K562	PUM2
chr16	88698200	88698327	+	3'-UTR	4.09744	11.88113	K562	PABPC4
chr16	88666293	88666357	+	CDS,intron-Proximal	4.40031	11.72604	K562	ZNF622
chr16	88643658	88643819	+	CDS,intron-Proximal	4.10658	11.57228	HepG2	G3BP1
chr16	88666209	88666356	+	CDS	4.44517	11.07283	K562	GRWD1
chr16	88695242	88695326	+	CDS,intron-Distal,intron-Proximal	6.17206	11.02807	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 118 entries

eCLIP assay for ZC3H18 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ZC3H18 is not available on ENCORE database.
85 RBPs can affect the levels of ZC3H18.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ZC3H18 is not available on ENCORE database.

85 RBPs can affect the gene expression of ZC3H18 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ZC3H18	ENSG00000158545.11	933.52870	3032.83920	-1.69990	55.90370	53.90980	HepG2	BOP1
ZC3H18	ENSG00000158545.11	1614.48200	3561.76980	-1.14150	23.33140	20.87120	K562	BOP1
ZC3H18	ENSG00000158545.11	2061.20650	1140.51680	0.85370	17.82640	16.21420	K562	PTBP1
ZC3H18	ENSG00000158545.11	2508.25560	1546.39730	0.69770	17.59810	16.18310	K562	FXR1
ZC3H18	ENSG00000158545.11	1976.49380	1118.14140	0.82170	15.93850	14.24390	K562	SRSF1
ZC3H18	ENSG00000158545.11	1932.07410	1044.35760	0.88740	16.23790	13.76210	K562	PCBP2
ZC3H18	ENSG00000158545.11	2542.40960	1329.63550	0.93510	14.35060	12.62940	K562	PRPF8
ZC3H18	ENSG00000158545.11	3212.76860	4499.18140	-0.48580	13.98860	12.52390	K562	UPF1
ZC3H18	ENSG00000158545.11	2038.59550	1394.49500	0.54770	13.19120	11.99970	HepG2	SUCLG1
ZC3H18	ENSG00000158545.11	1896.52830	1318.28890	0.52460	12.70230	11.62890	HepG2	PUM1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 100 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ZC3H18 is not available on ENCORE database.

36 RBPs can affect the splicing of ZC3H18 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	ZC3H18	ENSG00000158545.11	chr16	+	88653949	88654021			88653007	88653092	88664585	88664734	-0.22500	0.00009	excluded	HepG2	FTO
SE	ZC3H18	ENSG00000158545.11	chr16	+	88653949	88654021			88653007	88653092	88664585	88664734	0.19500	0.00012	included	K562	HNRNPM
SE	ZC3H18	ENSG00000158545.11	chr16	+	88653949	88654021			88653007	88653092	88664585	88664734	-0.19700	0.00001	excluded	HepG2	SF3A3
A3SS	ZC3H18	ENSG00000158545.11	chr16	+	88694295	88694527			88694327	88694527	88694029	88694190	0.06500	0.00005	longer	K562	AQR
A5SS	ZC3H18	ENSG00000158545.11	chr16	+	88691609	88691769			88691609	88691675	88694029	88694190	0.15600	0.00002	longer	K562	AQR
MXE	ZC3H18	ENSG00000158545.11	chr16	+	88675341	88675459	88677675	88677944	88666198	88666356	88688604	88688796	-0.14200	0.00048	2included	K562	BUD13
MXE	ZC3H18	ENSG00000158545.11	chr16	+	88675341	88675459	88677675	88677944	88666198	88666356	88688604	88688796	0.33000	0.00000	1included	HepG2	TAF15
MXE	ZC3H18	ENSG00000158545.11	chr16	+	88675341	88675459	88677675	88677944	88666198	88666356	88688604	88688796	-0.17300	0.00362	2included	HepG2	IGF2BP1
MXE	ZC3H18	ENSG00000158545.11	chr16	+	88675298	88675459	88677675	88677944	88666198	88666356	88688604	88688796	0.07700	0.00007	1included	K562	AQR
MXE	ZC3H18	ENSG00000158545.11	chr16	+	88675341	88675459	88677675	88677944	88666198	88666356	88688604	88688796	0.16700	0.00000	1included	K562	PUM1

Showing 1 to 10 of 47 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ZC3H18

General Information

Functions

Localization

Domains (AlphaFold: ZC3H18)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ZC3H18 is not avaliable on ENCORE database.

34 proteins are bound to ZC3H18 RNA:

eCLIP assay for ZC3H18 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ZC3H18 is not available on ENCORE database.

85 RBPs can affect the gene expression of ZC3H18 :

The Knockdown/knockout RNA-Seq assay for ZC3H18 is not available on ENCORE database.

36 RBPs can affect the splicing of ZC3H18 :

The Knockdown/knockout RNA-Seq assay for ZC3H18 is not avaliable on ENCORE database.