ENCORE RBNS:ZC3H18

ZC3H18 RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	ZC3H18
gene_aliases
Status	Released
Status_date	2020-12-07
Project	ENCODE4
Note
ID	4

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
ZC3H18-1300	RBNS	20-20	1300	ZC3H18_0nM_1300.fastq.gz
ZC3H18-5	RBNS	20-20	5	ZC3H18_0nM_5.fastq.gz
ZC3H18-80	RBNS	20-20	80	ZC3H18_0nM_80.fastq.gz
ZC3H18-input	CN	20-20	0	ZC3H18_0nM_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:ZC3H18	ENCSR614KXG	experiment	RNA Bind-n-Seq	ZC3H18	NT-BGKcLV13-1	Yes	Released	2020-11-23	ENCODE4			1717
chris-burge:lib-ZC3H18-1300	ENCLB714MUP	library	RNA Bind-n-Seq	ZC3H18	NT-BGKcLV13-1	Yes	Released	2020-11-23	ENCODE4			1741
chris-burge:lib-ZC3H18-5	ENCLB928BUF	library	RNA Bind-n-Seq	ZC3H18	NT-BGKcLV13-2	Yes	Released	2020-11-23	ENCODE4			1742
chris-burge:lib-ZC3H18-80	ENCLB606VXO	library	RNA Bind-n-Seq	ZC3H18	APEX1-BGKcLV13-3	Yes	Released	2020-11-23	ENCODE4			1743
chris-burge:ZC3H18_0nM_1300.fastq.gz	ENCFF948RDB	file_fastq	RNA Bind-n-Seq	ZC3H18	NT-BGKcLV13-1	Yes	Released	2020-11-23	ENCODE4			1792
chris-burge:ZC3H18_0nM_5.fastq.gz	ENCFF905HAO	file_fastq	RNA Bind-n-Seq	ZC3H18	NT-BGKcLV13-2	Yes	Released	2020-11-23	ENCODE4			1793
chris-burge:ZC3H18_0nM_80.fastq.gz	ENCFF304PSD	file_fastq	RNA Bind-n-Seq	ZC3H18	APEX1-BGKcLV13-3	Yes	Released	2020-11-23	ENCODE4			1794
chris-burge:ZC3H18_0nM_6mer_logo0.PWM.txt	ENCFF608YRR	file_pwm	RNA Bind-n-Seq	ZC3H18	NT-BGKcLV13-1	Yes	Released	2020-11-23	ENCODE4			1839
chris-burge:ZC3H18_0nM_6mer_logo1.PWM.txt	ENCFF275KID	file_pwm	RNA Bind-n-Seq	ZC3H18	NT-BGKcLV13-1	Yes	Released	2020-11-23	ENCODE4			1840
chris-burge:ZC3H18_0nM_enrichment_R.4mers.txt	ENCFF643LAA	file_enrichment	RNA Bind-n-Seq	ZC3H18	NT-BGKcLV13-1	Yes	Released	2020-11-23	ENCODE4			1841
chris-burge:ZC3H18_0nM_enrichment_R.5mers.txt	ENCFF948LZZ	file_enrichment	RNA Bind-n-Seq	ZC3H18	NT-BGKcLV13-1	Yes	Released	2020-11-23	ENCODE4			1842
chris-burge:ZC3H18_0nM_enrichment_R.6mers.txt	ENCFF223GDG	file_enrichment	RNA Bind-n-Seq	ZC3H18	NT-BGKcLV13-1	Yes	Released	2020-11-23	ENCODE4			1843
chris-burge:ZC3H18_0nM_enrichment_R.7mers.txt	ENCFF284WWS	file_enrichment	RNA Bind-n-Seq	ZC3H18	NT-BGKcLV13-1	Yes	Released	2020-11-23	ENCODE4			1844

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
ZC3H18_0nM_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PPP1R10_0nM_input.fastq.gz	ENCODE4
ZC3H18_0nM_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PPP1R10_0nM_input.fastq.gz	ENCODE4
ZC3H18_0nM_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PPP1R10_0nM_input.fastq.gz	ENCODE4
ZC3H18_0nM_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
ZC3H18_0nM_6mer_logo0.PWM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZC3H18_0nM_1300.fastq.gz,ZC3H18_0nM_5.fastq.gz,ZC3H18_0nM_80.fastq.gz,PPP1R10_0nM_input.fastq.gz		ENCODE4
ZC3H18_0nM_6mer_logo1.PWM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZC3H18_0nM_1300.fastq.gz,ZC3H18_0nM_5.fastq.gz,ZC3H18_0nM_80.fastq.gz,PPP1R10_0nM_input.fastq.gz		ENCODE4
ZC3H18_0nM_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZC3H18_0nM_1300.fastq.gz,ZC3H18_0nM_5.fastq.gz,ZC3H18_0nM_80.fastq.gz,PPP1R10_0nM_input.fastq.gz		ENCODE4
ZC3H18_0nM_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZC3H18_0nM_1300.fastq.gz,ZC3H18_0nM_5.fastq.gz,ZC3H18_0nM_80.fastq.gz,PPP1R10_0nM_input.fastq.gz		ENCODE4
ZC3H18_0nM_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZC3H18_0nM_1300.fastq.gz,ZC3H18_0nM_5.fastq.gz,ZC3H18_0nM_80.fastq.gz,PPP1R10_0nM_input.fastq.gz		ENCODE4
ZC3H18_0nM_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	ZC3H18_0nM_1300.fastq.gz,ZC3H18_0nM_5.fastq.gz,ZC3H18_0nM_80.fastq.gz,PPP1R10_0nM_input.fastq.gz		ENCODE4
ZC3H18_0nM_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
ZC3H18.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4