ATP5F1C

General Information

Gene Name       : ATP5F1C
Gene ID             : ENSG00000165629.19
Essential Gene : Yes

Functions

Localization(RBPImage: ATP5F1C)

Domains (AlphaFold: ATP5F1C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATP5F1CENSG00000165629.19274.79261.29268.04ENCSR000AEF
HepG2ATP5F1CENSG00000165629.19201.04264.38232.71ENCSR985KAT
K562ATP5F1CENSG00000165629.19336.32374.87355.60ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq ATP5C1-BGKLV32-K562ENCSR231DXJATP5C1K562ReleasedENCSR143COQ   shRNAKD% = 59.1,61.3
knockdown followed by RNA-seq ATP5C1-BGHLV30-HepG2ENCSR713OLVATP5C1HepG2ReleasedENCSR067GHD   shRNAKD% = 49.5,57.2






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
ATP5C1ENCAB846GVRGTX11427540156Released, ENCODE3BGHLV30-13, Released, ENCODE3BGKLV32-11, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ATP5C1K562shRNAENCSR231DXJENCSR143COQATP5C1_BGKLV32-11,ATP5C1_BGKLV32-12NT_BGKLV32-1,NT_BGKLV32-259.1,61.3ReleasedENCODE3
ATP5C1HepG2shRNAENCSR713OLVENCSR067GHDATP5C1_BGHLV30-13,ATP5C1_BGHLV30-14NT_BGHLV30-1,NT_BGHLV30-249.5,57.2ReleasedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    ATP5C1: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Speckles
  • Cytoplasm
  • Cytosolic












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








    RNA Targets

    • eCLIP assay for ATP5F1C is not avaliable on ENCORE database.



    Proteins bound to RNA

    • NO known proteins bind on ATP5F1C RNA with finished eCLIP experiments on ENCORE database.





    eCLIP assay for ATP5F1C is not avaliable on ENCORE database.






    NO known proteins are bound to ATP5F1C RNA with finished eCLIP experiments on ENCORE database.





    eCLIP assay for ATP5F1C is not avaliable on ENCORE database.



    Diffrential Expression

    • The Knockdown/knockout assay for ATP5F1C is not available on ENCORE database.

    • No RBPs affect the gene expression of ATP5F1C on ENCORE database.


    The Knockdown/knockout RNA-Seq assay for ATP5F1C is not available on ENCORE database.






    No RBPs affect the gene expression of ATP5F1C on ENCORE database.






    The Knockdown/knockout RNA-Seq assay for ATP5F1C is not available on ENCORE database.






    No RBPs affect the alternative splcing events of ATP5F1C on ENCORE database.





    The Knockdown/knockout RNA-Seq assay for ATP5F1C is not avaliable on ENCORE database.