SRSF4

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SRSF4	ENSG00000116350.16	68.55	73.04	70.80	ENCSR000AEF
HepG2	SRSF4	ENSG00000116350.16	61.89	71.31	66.60	ENCSR985KAT
K562	SRSF4	ENSG00000116350.16	83.50	88.67	86.09	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Controls	Method	Note
knockdown followed by RNA-seq	SRSF4-BGKLV13-K562	ENCSR697GLD	SRSF4	K562	Released	ENCSR815CVQ	shRNA	KD% = 25.9,11.5
knockdown followed by RNA-seq	SRSF4-BGKcLV04-K562	ENCSR939BTN	SRSF4	K562	Released	ENCSR005JBU	CRISPR	KD% = 66,73.8
knockdown followed by RNA-seq	SRSF4-BGHcLV05-HepG2	ENCSR929JKA	SRSF4	HepG2	Released	ENCSR805TIZ	CRISPR	KD% = 54.8,57.2
RNA Bind-n-Seq	RBNS: SRSF4	ENCSR252RIJ	SRSF4	cell-free sample	Released

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SRSF4	ENCAB653SNR	A303-670A	1		Released, ENCODE3	Released, ENCODE3		BGKcLV04-29, Released, ENCODE3
SRSF4	ENCAB000AXC	ARP40591_P050	QC21851		Released, ENCODE3	Released, ENCODE3		BGKcLV04-29, Released, ENCODE3

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
SRSF4	K562	shRNA	ENCSR697GLD	ENCSR815CVQ	SRSF4_BGKLV13_49,SRSF4_BGKLV13_50	NT_BGKLV13_1,NT_BGKLV13_2	25.9,11.5	Released	ENCODE3
SRSF4	HepG2	shRNA			BGHLV14-53,BGHLV14-54	BGHLV14-1,BGHLV14-2		NotSatisfied	ENCODE3
SRSF4	K562	CRISPR	ENCSR939BTN	ENCSR005JBU	SRSF4-BGKcLV04-29C,SRSF4-BGKcLV04-30C	NT-BGKcLV04-1C,NT-BGKcLV04-2C	66,73.8	Released	ENCODE3
SRSF4	K562	CRISPR			BGKcLV04-29-D12,BGKcLV04-30-D12	BGKcLV04-1,BGKcLV04-2		NotSatisfied	ENCODE3
SRSF4	K562	CRISPR			BGKcLV04-30-D12,BGKcLV04-29-D20	BGKcLV04-1,BGKcLV04-2		NotSatisfied	ENCODE3
SRSF4	K562	CRISPR			BGKcLV04-29-D20,BGKcLV04-30-D20	BGKcLV04-1,BGKcLV04-2		NotSatisfied	ENCODE3
SRSF4	K562	CRISPR			BGKcLV04-30-D20,BGHcLV05-33	BGKcLV04-1,BGKcLV04-2	,54.8	NotSatisfied	ENCODE3
SRSF4	HepG2	CRISPR	ENCSR929JKA	ENCSR805TIZ	SRSF4-BGHcLV05-33D,SRSF4-BGHcLV05-34D	NT-BGHcLV05-1D,NT-BGHcLV05-2D	54.8,57.2	Released	ENCODE3
SRSF4	HepG2	CRISPR			BGHcLV09-19,BGHcLV09-20	BGHcLV09-1,BGHcLV09-2		NotSatisfied	ENCODE4

GeneName	gene_aliases	Status	Project	Note
SRSF4	SRSF4		Released	ENCODE3

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SRSF4 is not avaliable on ENCORE database.

The binding motifs of SRSF4

Proteins bound to RNA

SRSF4 RNA is bound by 63 proteins.

eCLIP assay for SRSF4 is not avaliable on ENCORE database.

63 proteins are bound to SRSF4 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	29475228	29475373	-	3'-UTR,CDS,intron-Distal	5.62997	8.86368	HepG2	TRA2A
chr1	29486988	29487035	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.80738	6.42898	K562	AQR
chr1	29475601	29475661	-	3'-UTR,CDS,intron-Distal	4.22713	23.44011	K562	UCHL5
chr1	29475255	29475335	-	3'-UTR,CDS,intron-Distal	5.39289	44.46681	K562	UCHL5
chr1	29474502	29474560	-	3'-UTR,intron-Distal,intron-Proximal	3.98265	11.37833	K562	TIA1
chr1	29475099	29475164	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.75183	23.82845	K562	ZNF622
chr1	29486956	29487030	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.14795	3.47885	K562	LIN28B
chr1	29486892	29486964	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.02570	8.08507	HepG2	GRWD1
chr1	29475166	29475255	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.22591	46.51475	K562	UCHL5
chr1	29475270	29475398	-	3'-UTR,CDS,intron-Distal	4.55963	21.34315	K562	TRA2A
chr1	29474825	29474875	-	3'-UTR,intron-Distal	3.61269	10.09084	K562	RBM15
chr1	29474825	29474857	-	3'-UTR,intron-Distal	6.08437	400.00000	K562	PUM2
chr1	29475528	29475545	-	3'-UTR,CDS,intron-Distal	5.44701	19.31221	K562	UCHL5
chr1	29475057	29475176	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.12316	17.74098	K562	GRWD1
chr1	29485893	29485961	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.51817	15.94150	K562	ZNF622
chr1	29474280	29474310	-	3'-UTR,intron-Distal	5.58183	30.85076	K562	TIA1
chr1	29487005	29487043	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.81597	7.24665	K562	GPKOW
chr1	29486970	29487044	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.23597	11.13098	K562	U2AF2
chr1	29475074	29475162	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.21262	22.33277	K562	PUM1
chr1	29486826	29486889	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.69963	10.38502	K562	AQR
chr1	29486978	29487043	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.87101	11.39545	HepG2	U2AF2
chr1	29474738	29474825	-	3'-UTR,intron-Distal	4.86569	400.00000	K562	PUM2
chr1	29475073	29475158	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.43260	42.86547	K562	UCHL5
chr1	29475164	29475226	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.00131	28.55376	K562	ZNF622
chr1	29475296	29475322	-	3'-UTR,CDS,intron-Distal	3.16659	4.76316	K562	MTPAP
chr1	29475162	29475232	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.44469	25.26488	K562	PUM1
chr1	29475436	29475509	-	3'-UTR,CDS,intron-Distal	5.81064	78.86688	K562	UCHL5
chr1	29475341	29475394	-	3'-UTR,CDS,intron-Distal	6.06316	40.96888	K562	UCHL5
chr1	29475457	29475497	-	3'-UTR,CDS,intron-Distal	3.83836	3.05716	HepG2	PABPN1
chr1	29474285	29474331	-	3'-UTR,intron-Distal	3.95872	14.05961	K562	APOBEC3C
chr1	29474651	29474724	-	3'-UTR,intron-Distal,intron-Proximal	3.49079	4.02339	HepG2	PABPN1
chr1	29474285	29474331	-	3'-UTR,intron-Distal	4.21955	4.15622	HepG2	TIAL1
chr1	29474286	29474334	-	3'-UTR,intron-Distal	5.12131	400.00000	K562	PABPC4
chr1	29475112	29475164	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.76415	5.91267	K562	TRA2A
chr1	29474310	29474326	-	3'-UTR,intron-Distal	5.56445	30.85076	K562	TIA1
chr1	29475123	29475160	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.22304	7.16838	HepG2	BCLAF1
chr1	29486995	29487044	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.31552	4.24009	K562	U2AF1
chr1	29481181	29481262	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.89942	13.57281	HepG2	PRPF8
chr1	29485978	29486010	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.70536	5.71515	K562	GPKOW
chr1	29475164	29475270	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.64247	12.09111	K562	TRA2A
chr1	29474733	29474799	-	3'-UTR,intron-Distal	3.08317	8.26462	HepG2	GRWD1
chr1	29486578	29486603	-	3'-UTR,intron-Distal,intron-Proximal	4.64354	20.99464	K562	KHSRP
chr1	29474425	29474473	-	3'-UTR,intron-Distal	4.17960	65.49790	K562	PUM2
chr1	29474275	29474334	-	3'-UTR,intron-Distal	4.97829	19.33036	K562	FAM120A
chr1	29474858	29474879	-	3'-UTR,intron-Distal	4.08100	14.68801	K562	UCHL5
chr1	29486897	29486960	-	3'-UTR,CDS,intron-Distal	3.69622	6.51082	HepG2	PPIG
chr1	29474805	29474811	-	3'-UTR,intron-Distal	3.29644	10.40226	K562	UCHL5
chr1	29474283	29474335	-	3'-UTR,intron-Distal	4.24185	24.28677	K562	ZC3H11A
chr1	29474289	29474330	-	3'-UTR,intron-Distal	3.26401	11.93723	K562	PUM2
chr1	29486488	29486581	-	3'-UTR,intron-Distal,intron-Proximal	3.18092	4.76226	HepG2	KHSRP
chr1	29475270	29475348	-	3'-UTR,CDS,intron-Distal	3.80808	6.34578	HepG2	FTO
chr1	29486961	29487012	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.42437	8.84415	HepG2	BCLAF1
chr1	29474836	29474858	-	3'-UTR,intron-Distal	4.22058	16.87719	K562	UCHL5
chr1	29475092	29475118	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.80178	5.74979	HepG2	GRWD1
chr1	29475067	29475157	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.91291	6.25801	HepG2	G3BP1
chr1	29475176	29475225	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.76934	22.55396	K562	ZNF800
chr1	29474842	29474875	-	3'-UTR,intron-Distal	3.90056	7.97054	K562	GRWD1
chr1	29485825	29485887	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.23908	16.88154	K562	AQR
chr1	29474608	29474694	-	3'-UTR,intron-Distal,intron-Proximal	3.55179	13.03934	K562	RBM15
chr1	29474861	29474919	-	3'-UTR,intron-Distal	5.66431	400.00000	K562	PUM2
chr1	29475283	29475329	-	3'-UTR,CDS,intron-Distal	3.48538	19.44012	K562	ZNF622
chr1	29474285	29474371	-	3'-UTR,intron-Distal	3.74851	11.85521	K562	CPEB4
chr1	29475414	29475490	-	3'-UTR,CDS,intron-Distal	4.28076	13.69694	K562	TRA2A
chr1	29481227	29481258	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.83478	7.27605	HepG2	GRWD1
chr1	29475415	29475436	-	3'-UTR,CDS,intron-Distal	6.64037	76.89408	K562	UCHL5
chr1	29474283	29474332	-	3'-UTR,intron-Distal	3.72589	41.35177	K562	DDX6
chr1	29475586	29475665	-	3'-UTR,CDS,intron-Distal	3.47265	6.76493	K562	TRA2A
chr1	29474742	29474769	-	3'-UTR,intron-Distal	3.83227	5.71420	K562	RBM15
chr1	29481222	29481249	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.20026	15.56303	K562	UCHL5
chr1	29475394	29475415	-	3'-UTR,CDS,intron-Distal	7.55408	49.71399	K562	UCHL5
chr1	29485952	29486044	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.23970	9.30737	HepG2	U2AF2
chr1	29486581	29486605	-	3'-UTR,intron-Distal,intron-Proximal	3.90451	7.18461	HepG2	KHSRP
chr1	29475429	29475469	-	3'-UTR,CDS,intron-Distal	3.29022	3.46181	K562	DDX55
chr1	29474284	29474331	-	3'-UTR,intron-Distal	3.73935	12.65480	HepG2	DDX55
chr1	29475121	29475164	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.32812	9.91818	K562	ZNF800
chr1	29474835	29474877	-	3'-UTR,intron-Distal	3.38977	4.36839	K562	NOLC1
chr1	29475225	29475278	-	3'-UTR,CDS,intron-Distal	3.10867	29.41096	K562	ZNF800
chr1	29474900	29474938	-	3'-UTR,CDS,intron-Distal	3.28946	5.14772	K562	TRA2A
chr1	29481211	29481284	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.56366	7.93794	HepG2	BCLAF1
chr1	29486518	29486577	-	3'-UTR,intron-Distal,intron-Proximal	4.02052	15.31312	K562	KHSRP
chr1	29474384	29474401	-	3'-UTR,intron-Distal	3.87117	10.38566	K562	PUM2
chr1	29486581	29486668	-	3'-UTR,intron-Distal,intron-Proximal	3.12384	3.60337	HepG2	FUBP3
chr1	29475399	29475476	-	3'-UTR,CDS,intron-Distal	4.04859	30.80074	K562	ZNF622
chr1	29474803	29474887	-	3'-UTR,intron-Distal	3.46916	15.19667	HepG2	SUB1
chr1	29475178	29475221	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.77150	3.85588	HepG2	ZNF800
chr1	29485851	29485901	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.08048	6.79646	HepG2	PRPF8
chr1	29508216	29508276	-	5'-UTR,CDS,intron-Distal	3.24270	4.46344	HepG2	DDX3X
chr1	29508277	29508342	-	5'-UTR,intron-Distal	3.69353	8.49146	K562	DDX3X
chr1	29508331	29508399	-	5'-UTR,intron-Distal,intron-Proximal	4.21449	8.48142	K562	GEMIN5
chr1	29508207	29508270	-	5'-UTR,CDS,intron-Distal	3.51709	8.15321	K562	NONO
chr1	29508342	29508395	-	5'-UTR,intron-Distal,intron-Proximal	3.61557	3.95805	K562	DDX3X
chr1	29508235	29508331	-	5'-UTR,CDS,intron-Distal	4.16413	46.62843	K562	GEMIN5
chr1	29508316	29508324	-	5'-UTR,intron-Distal	3.15228	9.63246	K562	RBM15
chr1	29508276	29508354	-	5'-UTR,intron-Distal	4.10772	10.03874	HepG2	DDX3X
chr1	29508278	29508311	-	5'-UTR,intron-Distal	3.49359	12.82330	K562	RBM15
chr1	29508212	29508277	-	5'-UTR,CDS,intron-Distal	3.94715	9.50106	K562	DDX3X
chr1	29508315	29508371	-	5'-UTR,intron-Distal	3.36657	5.94153	K562	NONO
chr1	29508146	29508291	-	5'-UTR,CDS,intron-Distal	4.00758	4.86000	HepG2	SRSF9
chr1	29508228	29508274	-	5'-UTR,CDS,intron-Distal	3.77366	10.55743	K562	RBM15
chr1	29476614	29476628	-	CDS,intron-Distal,intron-Proximal	3.34455	13.16579	K562	UCHL5
chr1	29475706	29475791	-	CDS,intron-Distal	4.76951	9.68645	HepG2	AQR
chr1	29508107	29508172	-	CDS,intron-Distal	3.17123	5.76569	HepG2	PRPF8
chr1	29475723	29475734	-	CDS,intron-Distal	3.65099	5.36986	K562	RBM15
chr1	29495078	29495164	-	CDS,intron-Distal,intron-Proximal	3.91796	17.92031	HepG2	U2AF2
chr1	29475716	29475738	-	CDS,intron-Distal	3.94297	13.97212	K562	UCHL5
chr1	29508193	29508258	-	CDS,intron-Distal	3.48969	7.69339	K562	FMR1
chr1	29481209	29481218	-	CDS,intron-Distal,intron-Proximal	4.42005	5.35719	HepG2	GRWD1
chr1	29476575	29476636	-	CDS,intron-Distal,intron-Proximal	3.97676	5.62208	HepG2	PRPF8
chr1	29476675	29476679	-	CDS,intron-Distal	3.78933	12.16000	K562	UCHL5
chr1	29476640	29476696	-	CDS,intron-Distal	3.75289	4.41267	HepG2	PPIG
chr1	29481211	29481214	-	CDS,intron-Distal,intron-Proximal	3.51484	9.90066	K562	UCHL5
chr1	29505906	29505931	-	intron-Distal	3.16940	3.04831	K562	RBM15
chr1	29486633	29486668	-	intron-Distal,intron-Proximal	5.16083	38.97494	K562	KHSRP
chr1	29507866	29507992	-	intron-Distal	3.14901	8.27768	K562	EWSR1
chr1	29507881	29507991	-	intron-Distal	3.09797	13.64007	K562	DROSHA
chr1	29508041	29508085	-	intron-Distal	5.15521	24.26113	HepG2	EFTUD2
chr1	29481538	29481612	-	intron-Distal	3.87436	3.49011	K562	KHSRP
chr1	29486684	29486750	-	intron-Distal,intron-Proximal	3.88793	12.79245	K562	KHSRP
chr1	29504212	29504263	-	intron-Distal	4.03501	7.43565	K562	SAFB
chr1	29505491	29505562	-	intron-Distal	3.28689	11.34062	K562	SAFB
chr1	29485832	29485871	-	intron-Distal,intron-Proximal	4.05293	4.89564	K562	GPKOW
chr1	29493134	29493214	-	intron-Distal,intron-Proximal	4.33204	8.66140	K562	RBM22
chr1	29496862	29496917	-	intron-Distal	4.47387	5.66749	HepG2	TIA1
chr1	29506438	29506483	-	intron-Distal	3.92110	7.19013	K562	SAFB
chr1	29492577	29492633	-	intron-Distal,intron-Proximal	3.82098	3.59805	HepG2	SF3B4
chr1	29476495	29476538	-	intron-Distal,intron-Proximal	3.80843	7.75444	K562	PRPF8
chr1	29500656	29500709	-	intron-Distal	4.12782	15.11540	HepG2	ILF3
chr1	29508044	29508109	-	intron-Distal	3.20431	3.88205	HepG2	PCBP2
chr1	29487279	29487348	-	intron-Distal	3.03298	6.23693	K562	SMNDC1
chr1	29505946	29506016	-	intron-Distal	3.51789	5.12119	HepG2	SRSF9
chr1	29486605	29486667	-	intron-Distal,intron-Proximal	5.11193	14.19168	HepG2	KHSRP
chr1	29506114	29506207	-	intron-Distal	3.70268	12.33935	K562	SAFB
chr1	29508038	29508123	-	intron-Distal	3.70891	10.28443	K562	NONO
chr1	29505959	29506045	-	intron-Distal	3.04208	11.23240	K562	SAFB
chr1	29508085	29508145	-	intron-Distal	4.63828	19.91098	HepG2	EFTUD2
chr1	29507858	29508006	-	intron-Distal	3.74065	24.66172	K562	CSTF2T
chr1	29507909	29507998	-	intron-Distal	4.09917	15.53554	K562	GTF2F1
chr1	29507878	29507993	-	intron-Distal	3.01258	5.82391	HepG2	FASTKD2
chr1	29505196	29505274	-	intron-Distal	3.28423	8.28896	K562	SAFB
chr1	29505145	29505195	-	intron-Distal	3.28371	3.92844	K562	PPIL4
chr1	29486603	29486633	-	intron-Distal,intron-Proximal	5.64354	46.13274	K562	KHSRP
chr1	29508020	29508151	-	intron-Distal	3.40655	18.27433	K562	DDX51
chr1	29492128	29492242	-	intron-Distal	3.03715	5.45690	K562	HNRNPA1
chr1	29496844	29496912	-	intron-Distal	3.68371	11.43638	K562	TIA1
chr1	29476574	29476612	-	intron-Distal,intron-Proximal	4.18137	4.98250	K562	AQR
chr1	29504270	29504343	-	intron-Distal	3.10116	7.18438	K562	SAFB
chr1	29486028	29486078	-	intron-Distal,intron-Proximal	3.64215	8.56571	K562	KHSRP
chr1	29486119	29486171	-	intron-Distal,intron-Proximal	3.39450	5.57010	K562	KHSRP
chr1	29502288	29502392	-	intron-Distal	3.57520	5.22214	K562	ILF3
chr1	29496855	29496920	-	intron-Distal	4.08803	3.31824	HepG2	TIAL1
chr1	29486750	29486805	-	intron-Distal,intron-Proximal	4.41543	23.08319	K562	KHSRP
chr1	29508029	29508153	-	intron-Distal	3.42665	25.62674	K562	CSTF2T
chr1	29508049	29508117	-	intron-Distal	3.63018	15.30346	K562	DDX52
chr1	29486757	29486802	-	intron-Distal,intron-Proximal	3.15849	3.53952	HepG2	KHSRP
chr1	29508006	29508147	-	intron-Distal	3.66889	22.32633	K562	GTF2F1
chr1	29505311	29505398	-	intron-Distal	3.00856	12.00764	K562	NIPBL
chr1	29506182	29506230	-	intron-Distal	3.43554	9.61401	K562	SAFB2
chr1	29506422	29506487	-	intron-Distal	3.00321	6.67920	K562	PPIL4
chr1	29506295	29506320	-	intron-Distal	3.04917	9.68670	K562	KHSRP
chr1	29484452	29484496	-	intron-Distal	3.08995	3.40391	K562	XRCC6
chr1	29507915	29507991	-	intron-Distal	3.38707	13.08189	K562	DDX51
chr1	29486806	29486827	-	intron-Distal,intron-Proximal	5.09732	25.17007	K562	KHSRP
chr1	29486197	29486227	-	intron-Distal	3.77853	5.98773	K562	KHSRP
chr1	29487283	29487351	-	intron-Distal	3.56316	12.09266	K562	SF3B4
chr1	29492289	29492384	-	intron-Distal,intron-Proximal	3.67687	8.23020	K562	EFTUD2
chr1	29508023	29508133	-	intron-Distal	3.53196	28.31179	K562	EFTUD2
chr1	29496218	29496289	-	intron-Distal	4.27266	3.34098	HepG2	HNRNPM
chr1	29500874	29500935	-	intron-Distal	3.54736	5.56048	K562	KHSRP
chr1	29506121	29506196	-	intron-Distal	3.05190	8.26978	K562	NIPBL
chr1	29508029	29508138	-	intron-Distal	3.07781	18.58301	K562	GEMIN5
chr1	29491217	29491264	-	intron-Distal	4.81178	6.96728	HepG2	HNRNPM
chr1	29486293	29486320	-	intron-Distal,intron-Proximal	3.78045	3.20552	HepG2	KHSRP
chr1	29507917	29507965	-	intron-Distal	3.90427	11.11261	HepG2	PRPF4
chr1	29505805	29505836	-	intron-Distal	3.28992	8.36521	K562	SAFB
chr1	29507821	29507855	-	intron-Distal	3.36336	4.01575	K562	NONO
chr1	29507994	29508112	-	intron-Distal	4.18410	6.74777	HepG2	CDC40
chr1	29507920	29507998	-	intron-Distal	4.86838	13.67622	HepG2	EFTUD2
chr1	29507842	29507913	-	intron-Distal	3.27202	4.40677	K562	HNRNPM
chr1	29486837	29486862	-	intron-Distal,intron-Proximal	4.15468	4.02395	HepG2	KHSRP
chr1	29507883	29507975	-	intron-Distal	4.17491	13.61834	K562	NONO
chr1	29497019	29497088	-	intron-Distal	3.61565	3.06691	HepG2	SAFB
chr1	29505510	29505557	-	intron-Distal	3.45374	14.07798	K562	NIPBL
chr1	29507768	29507815	-	intron-Distal	4.13310	7.00469	K562	NONO
chr1	29485804	29485825	-	intron-Distal,intron-Proximal	4.45370	10.16714	K562	AQR
chr1	29507917	29507959	-	intron-Distal	3.36351	8.81638	K562	GEMIN5
chr1	29496924	29496983	-	intron-Distal	3.32898	7.08969	K562	ZNF622
chr1	29507975	29508015	-	intron-Distal	3.77436	5.16186	K562	NONO
chr1	29508038	29508130	-	intron-Distal	3.94831	11.53741	HepG2	GTF2F1
chr1	29505129	29505180	-	intron-Distal	3.55399	7.98908	K562	SAFB2
chr1	29508034	29508154	-	intron-Distal	3.63983	17.08809	HepG2	PRPF4
chr1	29495333	29495396	-	intron-Distal	3.00699	5.73989	HepG2	HNRNPL
chr1	29505303	29505367	-	intron-Distal	3.52385	5.18925	K562	PPIL4
chr1	29507952	29508008	-	intron-Distal	3.71764	7.09961	K562	FUS
chr1	29505764	29505829	-	intron-Distal	3.68279	9.51971	K562	SAFB2
chr1	29504058	29504212	-	intron-Distal	3.23669	18.50324	K562	SAFB
chr1	29505782	29505805	-	intron-Distal	4.67502	6.50589	K562	SAFB
chr1	29507884	29507993	-	intron-Distal	3.59413	9.91704	HepG2	GTF2F1
chr1	29508058	29508112	-	intron-Distal	3.65819	3.94566	HepG2	FKBP4
chr1	29505503	29505573	-	intron-Distal	3.76385	6.06436	HepG2	BCLAF1
chr1	29486827	29486864	-	intron-Distal,intron-Proximal	4.50933	22.97437	K562	KHSRP
chr1	29507965	29508012	-	intron-Distal	4.04472	7.97774	HepG2	PRPF4
chr1	29505398	29505467	-	intron-Distal	3.11470	8.95098	K562	SAFB2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for SRSF4 is not avaliable on ENCORE database.

Diffrential Expression

2,946 differentially expressed genes after Knockdown/Knockout SRSF4 protein.

84 RBPs can affect the levels of SRSF4.

2,946 differentially expressed genes after Knockdown/Knockout SRSF4 protein :

Only display 100 entries as example. Please click "View All" button to see all 2,946 entries.

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RNF19A	ENSG00000034677.7	2402.95440	3334.27420	-0.47260	4.49870	1.43090	HepG2	SRSF4
PDGFB	ENSG00000100311.12	395.04660	788.57610	-0.99720	12.03110	7.96330	HepG2	SRSF4
NDRG1	ENSG00000104419.10	20937.62910	28954.49260	-0.46770	5.55950	2.30460	HepG2	SRSF4
ENO2	ENSG00000111674.4	1663.27100	2383.38510	-0.51900	5.43940	2.21670	HepG2	SRSF4
ERRFI1	ENSG00000116285.8	9810.03150	14500.66290	-0.56380	6.29050	2.96300	HepG2	SRSF4
SRSF4	ENSG00000116350.11	1057.03390	1756.44810	-0.73260	8.50580	4.73910	HepG2	SRSF4
SRSF6	ENSG00000124193.10	5173.60570	3587.39810	0.52810	6.54200	3.17320	HepG2	SRSF4
EGLN3	ENSG00000129521.9	868.21060	1372.84460	-0.66110	6.89690	3.48230	HepG2	SRSF4
BHLHE40	ENSG00000134107.4	6324.91300	8786.26950	-0.47420	4.86170	1.74820	HepG2	SRSF4
FAM13A	ENSG00000138640.10	1308.31580	2633.96560	-1.00950	15.63290	11.26400	HepG2	SRSF4
SLC7A11	ENSG00000151012.9	880.73020	574.45100	0.61640	5.01450	1.84980	HepG2	SRSF4
HK2	ENSG00000159399.5	4593.48070	6591.66490	-0.52110	6.07360	2.78390	HepG2	SRSF4
ELF3	ENSG00000163435.11	436.58400	853.33780	-0.96690	11.04790	7.15620	HepG2	SRSF4
PTAFR	ENSG00000169403.7	240.89420	454.16040	-0.91480	7.65240	4.06180	HepG2	SRSF4
PFKFB3	ENSG00000170525.14	278.39490	494.73860	-0.82950	6.94520	3.48230	HepG2	SRSF4
SOCS3	ENSG00000184557.3	37.01460	99.57950	-1.42780	4.91360	1.77520	HepG2	SRSF4
FAM110C	ENSG00000184731.5	80.31310	175.58720	-1.12850	4.75590	1.66580	HepG2	SRSF4
MAGED4B	ENSG00000187243.12	788.77650	1297.75450	-0.71830	7.49230	3.96860	HepG2	SRSF4
GOLGA6L9	ENSG00000197978.8	0.00000	31.48470	-99999.99999	4.38580	1.33920	HepG2	SRSF4
RPL21P75	ENSG00000213860.3	122.15000	237.26350	-0.95780	5.14330	1.95060	HepG2	SRSF4
BLOC1S5-TXNDC5	ENSG00000259040.3	0.00000	27.51670	-99999.99999	7.78540	4.11550	HepG2	SRSF4
FUCA2	ENSG00000001036.9	928.52560	1249.04700	-0.42780	4.02850	2.72470	K562	SRSF4
ANKIB1	ENSG00000001629.5	787.09170	988.59790	-0.32890	2.36090	1.40030	K562	SRSF4
CYP51A1	ENSG00000001630.11	2889.45940	5047.98830	-0.80490	5.04070	3.54760	K562	SRSF4
BAD	ENSG00000002330.9	68.34080	27.39920	1.31850	3.01810	1.90690	K562	SRSF4
MAD1L1	ENSG00000002822.11	314.28150	210.64610	0.57710	2.94810	1.85230	K562	SRSF4
DBNDD1	ENSG00000003249.9	334.44580	210.86990	0.66530	3.87800	2.60230	K562	SRSF4
TFPI	ENSG00000003436.10	1427.64060	1752.34100	-0.29570	2.47950	1.49020	K562	SRSF4
RBM5	ENSG00000003756.12	1942.58580	2555.63350	-0.39570	3.64630	2.41350	K562	SRSF4
ARF5	ENSG00000004059.6	1161.09310	861.43040	0.43060	3.88020	2.60390	K562	SRSF4
AK2	ENSG00000004455.12	6709.51730	8160.90850	-0.28250	3.14730	2.00750	K562	SRSF4
FKBP4	ENSG00000004478.5	2030.62380	2540.46270	-0.32320	3.21600	2.06590	K562	SRSF4
KDM1A	ENSG00000004487.11	3595.42410	4733.16570	-0.39660	5.23440	3.70300	K562	SRSF4
RBM6	ENSG00000004534.10	1442.24220	2011.34140	-0.47980	2.40330	1.43230	K562	SRSF4
RECQL	ENSG00000004700.11	553.45640	737.31730	-0.41380	2.93500	1.84140	K562	SRSF4
ARHGAP33	ENSG00000004777.14	499.11500	269.68470	0.88800	8.02370	6.10210	K562	SRSF4
DVL2	ENSG00000004975.7	829.80310	624.98500	0.40880	3.02820	1.91430	K562	SRSF4
UPF1	ENSG00000005007.8	2001.49360	1562.97990	0.35670	3.52090	2.31320	K562	SRSF4
ACSM3	ENSG00000005187.7	3992.08390	5288.67370	-0.40580	5.58070	3.98570	K562	SRSF4
SPPL2B	ENSG00000005206.12	674.63940	381.39050	0.82270	8.63570	6.64250	K562	SRSF4
PRKAR2B	ENSG00000005249.8	2908.94680	3458.44240	-0.24960	2.26560	1.33090	K562	SRSF4
CREBBP	ENSG00000005339.8	1709.83320	1333.12980	0.35890	3.36460	2.18890	K562	SRSF4
RHBDD2	ENSG00000005486.12	719.27880	412.51520	0.80200	6.54300	4.80420	K562	SRSF4
IBTK	ENSG00000005700.10	693.58840	923.94290	-0.41370	3.33200	2.16210	K562	SRSF4
FBXL3	ENSG00000005812.6	257.37400	353.61650	-0.45830	2.28450	1.34520	K562	SRSF4
LAMP2	ENSG00000005893.11	1575.20240	2153.45020	-0.45110	5.40280	3.84170	K562	SRSF4
GGNBP2	ENSG00000005955.8	1495.14650	2048.90480	-0.45460	3.55230	2.33810	K562	SRSF4
ITGA2B	ENSG00000005961.13	300.89590	210.22660	0.51720	2.42490	1.44880	K562	SRSF4
JHDM1D	ENSG00000006459.6	933.26620	1266.45540	-0.44040	4.27970	2.92690	K562	SRSF4
PHTF2	ENSG00000006576.12	815.09190	1072.25550	-0.39560	2.25420	1.32250	K562	SRSF4
IFRD1	ENSG00000006652.9	1031.73130	1319.90570	-0.35540	2.44880	1.46750	K562	SRSF4
MARK4	ENSG00000007047.10	687.47250	529.50730	0.37660	2.39380	1.42400	K562	SRSF4
CCDC124	ENSG00000007080.6	491.39020	300.74800	0.70820	5.52050	3.93980	K562	SRSF4
MATK	ENSG00000007264.9	225.33410	113.99370	0.98300	5.27690	3.73890	K562	SRSF4
RPUSD1	ENSG00000007376.3	82.54910	19.47260	2.08370	4.30210	2.94340	K562	SRSF4
BAIAP3	ENSG00000007516.9	197.19950	109.73110	0.84560	3.80260	2.53910	K562	SRSF4
TSR3	ENSG00000007520.3	150.77960	83.55140	0.85160	3.05980	1.93950	K562	SRSF4
PIGQ	ENSG00000007541.10	206.11510	92.76460	1.15170	4.46880	3.07940	K562	SRSF4
NADK	ENSG00000008130.11	912.08200	719.79700	0.34150	2.39100	1.42240	K562	SRSF4
SYPL1	ENSG00000008282.3	1057.06530	1479.46220	-0.48500	5.33830	3.78920	K562	SRSF4
SPAG9	ENSG00000008294.16	2695.73380	4001.96280	-0.57000	3.55390	2.33880	K562	SRSF4
CRY1	ENSG00000008405.7	686.47830	867.70130	-0.33800	2.33980	1.38430	K562	SRSF4
NFIX	ENSG00000008441.12	394.42370	230.73960	0.77340	5.48300	3.90770	K562	SRSF4
PKD1	ENSG00000008710.13	1156.57350	559.35110	1.04790	17.83640	15.01170	K562	SRSF4
CSDE1	ENSG00000009307.11	11438.03580	15352.32250	-0.42460	6.77240	5.00280	K562	SRSF4
MLXIPL	ENSG00000009950.11	476.62960	247.50470	0.94530	8.06460	6.13560	K562	SRSF4
RANBP9	ENSG00000010017.9	2501.02650	3230.19210	-0.36910	4.28110	2.92760	K562	SRSF4
ZNF207	ENSG00000010244.12	6617.25400	7953.49020	-0.26540	2.61060	1.59420	K562	SRSF4
NCAPD2	ENSG00000010292.8	4889.50230	5861.20970	-0.26150	2.66670	1.63910	K562	SRSF4
NISCH	ENSG00000010322.11	1182.16570	884.34890	0.41860	3.77880	2.51970	K562	SRSF4
MRC2	ENSG00000011028.9	532.61560	293.37510	0.86020	7.99900	6.08170	K562	SRSF4
PTBP1	ENSG00000011304.12	5887.40110	4646.98510	0.34120	4.17540	2.84170	K562	SRSF4
PIK3C2A	ENSG00000011405.9	1335.80760	2147.44800	-0.68490	5.09880	3.59410	K562	SRSF4
ANLN	ENSG00000011426.6	2409.36500	3250.97380	-0.43220	4.32650	2.96130	K562	SRSF4
WIZ	ENSG00000011451.13	935.94250	519.76260	0.84850	11.09240	8.85490	K562	SRSF4
ERCC1	ENSG00000012061.11	904.56630	624.69970	0.53400	4.96560	3.48590	K562	SRSF4
PRICKLE3	ENSG00000012211.8	445.57180	254.12230	0.81000	6.45760	4.73020	K562	SRSF4
MAP4K5	ENSG00000012983.7	604.81300	781.19070	-0.36920	2.56900	1.56190	K562	SRSF4
MAN2B2	ENSG00000013288.4	369.71520	228.45170	0.69440	3.59520	2.37290	K562	SRSF4
SLC25A39	ENSG00000013306.11	2673.27010	1911.39960	0.48390	4.19470	2.85650	K562	SRSF4
NUB1	ENSG00000013374.11	2748.83520	3394.39720	-0.30430	3.13450	1.99810	K562	SRSF4
PGM3	ENSG00000013375.11	2026.92720	2436.96320	-0.26580	2.31100	1.36380	K562	SRSF4
CLK1	ENSG00000013441.11	934.87520	1707.02450	-0.86860	2.62320	1.60410	K562	SRSF4
RNF14	ENSG00000013561.13	859.85310	1181.05800	-0.45790	4.40150	3.02390	K562	SRSF4
UFL1	ENSG00000014123.9	891.19290	1239.90090	-0.47640	4.80930	3.36180	K562	SRSF4
ZC3H3	ENSG00000014164.6	533.21750	301.92270	0.82040	7.38940	5.54060	K562	SRSF4
CAPN1	ENSG00000014216.11	1747.76660	1209.60960	0.53090	6.65050	4.89410	K562	SRSF4
MDH1	ENSG00000014641.13	1233.36390	1853.61970	-0.58770	6.46280	4.73160	K562	SRSF4
COX15	ENSG00000014919.8	431.74440	632.43060	-0.55070	4.37800	3.00500	K562	SRSF4
CCDC88C	ENSG00000015133.14	444.08590	316.17610	0.49000	2.83470	1.76710	K562	SRSF4
MATR3	ENSG00000015479.13	7802.04990	10453.12280	-0.42200	2.28690	1.34680	K562	SRSF4
ATP2C1	ENSG00000017260.15	774.86040	988.04410	-0.35060	2.61620	1.59880	K562	SRSF4
RALBP1	ENSG00000017797.7	2162.14640	2595.85960	-0.26370	2.28800	1.34750	K562	SRSF4
PHLDB1	ENSG00000019144.12	620.74010	415.53600	0.57890	3.05850	1.93860	K562	SRSF4
NCDN	ENSG00000020129.11	387.32570	247.63330	0.64520	3.70240	2.45780	K562	SRSF4
ZFP64	ENSG00000020256.15	342.53870	222.63390	0.62150	3.49940	2.29570	K562	SRSF4
MRE11A	ENSG00000020922.8	619.54970	887.09000	-0.51790	2.58790	1.57690	K562	SRSF4
OSBPL5	ENSG00000021762.15	110.67150	56.81780	0.96180	2.85980	1.78460	K562	SRSF4
AQR	ENSG00000021776.6	1635.91680	2189.55360	-0.42050	4.80270	3.35620	K562	SRSF4
RTFDC1	ENSG00000022277.8	870.77050	1155.10770	-0.40770	3.56860	2.35090	K562	SRSF4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

84 RBPs can affect the gene expression of SRSF4 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SRSF4	ENSG00000116350.11	1294.92490	1523.11990	-0.23420	2.63300	2.03680	HepG2	ACO1
SRSF4	ENSG00000116350.11	1271.73510	1530.27270	-0.26700	2.93420	2.14500	HepG2	AKAP8L
SRSF4	ENSG00000116350.11	1721.68360	2441.21210	-0.50380	6.01260	5.17030	HepG2	BOP1
SRSF4	ENSG00000116350.11	1416.85640	2241.14400	-0.66150	8.79800	7.63230	HepG2	CPSF6
SRSF4	ENSG00000116350.11	1798.52220	2179.33570	-0.27710	3.14530	2.46860	HepG2	CELF1
SRSF4	ENSG00000116350.11	879.13710	1298.02440	-0.56220	6.27960	5.30590	HepG2	DDX21
SRSF4	ENSG00000116350.11	602.52230	1240.41790	-1.04170	13.65550	12.10750	HepG2	DDX55
SRSF4	ENSG00000116350.11	952.13820	1289.56390	-0.43760	3.01950	2.37700	HepG2	DDX6
SRSF4	ENSG00000116350.11	1818.60360	2214.53940	-0.28420	2.00440	1.30370	HepG2	EIF4G2
SRSF4	ENSG00000116350.11	1621.28390	2518.07510	-0.63520	16.31200	15.05120	HepG2	ETF1
SRSF4	ENSG00000116350.11	948.76160	1160.30680	-0.29040	2.40360	1.31700	HepG2	FAM120A
SRSF4	ENSG00000116350.11	2014.61030	2500.10650	-0.31150	2.25360	1.55520	HepG2	FIP1L1
SRSF4	ENSG00000116350.11	777.87400	1032.40500	-0.40840	2.86260	1.57060	HepG2	FKBP4
SRSF4	ENSG00000116350.11	1660.79490	964.09610	0.78450	5.34650	4.26370	HepG2	FUBP3
SRSF4	ENSG00000116350.11	2103.52330	1382.22930	0.60570	6.59000	5.54880	HepG2	FXR1
SRSF4	ENSG00000116350.11	1852.78990	1361.30280	0.44460	3.82650	2.76910	HepG2	G3BP2
SRSF4	ENSG00000116350.11	1588.56330	2153.50630	-0.43900	7.42420	6.02430	HepG2	HNRNPA2B1
SRSF4	ENSG00000116350.11	1097.71870	1352.29740	-0.30090	2.14680	1.52670	HepG2	HNRNPC
SRSF4	ENSG00000116350.11	2225.76670	1298.69650	0.77710	11.75650	10.41300	HepG2	HNRNPK
SRSF4	ENSG00000116350.11	1733.09950	2424.40540	-0.48430	4.91120	4.09730	HepG2	HNRNPLL
SRSF4	ENSG00000116350.11	1284.22440	2343.94730	-0.86800	9.93210	7.69500	HepG2	HSPD1
SRSF4	ENSG00000116350.11	2065.30420	2961.99310	-0.52020	4.19340	3.16490	HepG2	LARP4
SRSF4	ENSG00000116350.11	1731.57010	1382.71400	0.32450	2.13180	1.55340	HepG2	MAGOH
SRSF4	ENSG00000116350.11	1767.85070	1390.37520	0.34640	2.14660	1.58680	HepG2	MATR3
SRSF4	ENSG00000116350.11	1424.55710	2023.07220	-0.50600	6.69480	5.48960	HepG2	MSI2
SRSF4	ENSG00000116350.11	2852.04150	2149.74220	0.40770	4.00860	3.11300	HepG2	NSUN2
SRSF4	ENSG00000116350.11	1769.19580	1267.04030	0.48150	4.08270	3.21680	HepG2	PABPC4
SRSF4	ENSG00000116350.11	1655.46380	1326.35590	0.31970	4.36510	3.63210	HepG2	PCBP1
SRSF4	ENSG00000116350.11	1848.51600	1542.26900	0.26120	2.88390	2.09680	HepG2	PRPF4
SRSF4	ENSG00000116350.11	1525.31640	2218.00730	-0.54020	7.07840	6.18130	HepG2	PUF60
SRSF4	ENSG00000116350.11	1666.55800	2354.56660	-0.49860	12.89040	11.80770	HepG2	PUM1
SRSF4	ENSG00000116350.11	1901.53060	2352.81320	-0.30720	3.13740	2.42330	HepG2	PUM2
SRSF4	ENSG00000116350.11	1252.27880	1551.39580	-0.30900	4.13910	3.41210	HepG2	PUS1
SRSF4	ENSG00000116350.11	1907.17870	1461.58760	0.38380	4.90900	4.11290	HepG2	QKI
SRSF4	ENSG00000116350.11	1890.41000	1361.84880	0.47300	2.25940	1.61760	HepG2	RAVER1
SRSF4	ENSG00000116350.11	1533.65370	2104.63240	-0.45660	7.44180	6.68860	HepG2	RBM22
SRSF4	ENSG00000116350.11	1856.07230	1326.54660	0.48450	6.13900	5.17060	HepG2	RBM25
SRSF4	ENSG00000116350.11	1853.47010	1502.01550	0.30320	3.91960	3.29680	HepG2	NELFE
SRSF4	ENSG00000116350.11	1979.55580	1399.03920	0.50060	9.94770	8.89080	HepG2	RECQL
SRSF4	ENSG00000116350.11	834.66880	1263.19240	-0.59780	7.44370	6.49440	HepG2	RPS19
SRSF4	ENSG00000116350.11	1003.44050	1365.53140	-0.44450	4.00550	3.05150	HepG2	RPS2
SRSF4	ENSG00000116350.11	877.21840	1267.72340	-0.53120	4.87750	3.64230	HepG2	SERBP1
SRSF4	ENSG00000116350.11	2945.24950	2336.77680	0.33380	1.85880	1.30350	HepG2	SF3A3
SRSF4	ENSG00000116350.11	1434.96570	2843.09990	-0.98640	2.94030	1.43350	HepG2	SFPQ
SRSF4	ENSG00000116350.11	1750.58620	2670.04150	-0.60900	4.19490	3.22560	HepG2	SNRNP70
SRSF4	ENSG00000116350.11	1057.03390	1756.44810	-0.73260	8.50580	4.73910	HepG2	SRSF4
SRSF4	ENSG00000116350.11	1708.99000	2190.02370	-0.35780	5.38070	4.54930	HepG2	SRSF5
SRSF4	ENSG00000116350.11	1274.95120	1576.99920	-0.30670	3.46090	2.69450	HepG2	SRSF7
SRSF4	ENSG00000116350.11	1410.93890	1193.24020	0.24170	2.69030	2.14450	HepG2	SRSF9
SRSF4	ENSG00000116350.11	2182.29690	2490.60500	-0.19060	2.19810	1.63210	HepG2	SUCLG1
SRSF4	ENSG00000116350.11	1554.61100	1318.43160	0.23760	2.18730	1.67870	HepG2	TAF15
SRSF4	ENSG00000116350.11	1779.90090	2363.20230	-0.40890	4.02060	3.16640	HepG2	TARDBP
SRSF4	ENSG00000116350.11	633.25090	827.56010	-0.38610	2.26250	1.35350	HepG2	TFIP11
SRSF4	ENSG00000116350.11	1817.54250	1211.29330	0.58530	9.06770	7.56990	HepG2	TIA1
SRSF4	ENSG00000116350.11	3114.45340	2138.47900	0.54230	6.14590	5.22670	HepG2	U2AF1
SRSF4	ENSG00000116350.11	1614.02240	2293.77980	-0.50710	4.19470	3.15180	HepG2	UBE2L3
SRSF4	ENSG00000116350.11	1611.49690	1215.47150	0.40680	2.74190	2.02000	HepG2	XRN2
SRSF4	ENSG00000116350.11	7491.95010	3255.33970	1.20240	52.70030	50.29160	K562	AGGF1
SRSF4	ENSG00000116350.11	5288.51620	3577.32900	0.56390	2.39290	1.48870	K562	AKAP8
SRSF4	ENSG00000116350.11	7428.44090	3387.37840	1.13280	16.16830	14.35120	K562	AKAP8L
SRSF4	ENSG00000116350.11	4691.02400	5659.75970	-0.27080	2.93010	1.65170	K562	APOBEC3C
SRSF4	ENSG00000116350.11	5618.28730	4716.90370	0.25220	2.04840	1.52830	K562	AQR
SRSF4	ENSG00000116350.11	5826.22950	3554.26960	0.71290	15.88970	13.50530	K562	ATP5C1
SRSF4	ENSG00000116350.11	3761.54450	4937.66580	-0.39250	5.46790	4.37280	K562	CPSF6
SRSF4	ENSG00000116350.11	5263.97670	3819.40850	0.46270	5.77200	3.61410	K562	DDX19B
SRSF4	ENSG00000116350.11	5489.30640	3644.74900	0.59070	3.94640	2.87610	K562	DKC1
SRSF4	ENSG00000116350.11	3349.47780	2489.44600	0.42800	2.89120	1.58150	K562	EEF2
SRSF4	ENSG00000116350.11	3359.04760	2574.91300	0.38340	2.70800	1.68460	K562	EIF3D
SRSF4	ENSG00000116350.11	2481.26680	1802.78950	0.46070	7.64820	6.33110	K562	EIF3G
SRSF4	ENSG00000116350.11	4197.78290	5023.87760	-0.25920	2.07760	1.33210	K562	FMR1
SRSF4	ENSG00000116350.11	3907.58600	2933.78210	0.41340	5.12210	3.09920	K562	G3BP1
SRSF4	ENSG00000116350.11	8473.29130	4764.52500	0.83050	4.80680	3.05660	K562	HNRNPA2B1
SRSF4	ENSG00000116350.11	2273.27560	3194.55830	-0.49080	6.93050	6.02610	K562	HNRNPC
SRSF4	ENSG00000116350.11	4338.73490	5396.07660	-0.31460	3.41930	2.22860	K562	HNRNPL
SRSF4	ENSG00000116350.11	4845.45510	4052.89880	0.25760	3.23730	2.27470	K562	HNRNPU
SRSF4	ENSG00000116350.11	3991.86560	5635.98650	-0.49760	4.16420	3.19450	K562	HSPD1
SRSF4	ENSG00000116350.11	3956.74850	3068.70300	0.36660	2.57600	1.59780	K562	IGF2BP2
SRSF4	ENSG00000116350.11	7361.69090	3594.68030	1.03410	8.49860	6.84660	K562	KIF1C
SRSF4	ENSG00000116350.11	2603.72230	3218.43700	-0.30580	3.10030	2.11990	K562	MATR3
SRSF4	ENSG00000116350.11	7348.01940	4026.97430	0.86760	14.08120	11.79250	K562	MBNL1
SRSF4	ENSG00000116350.11	6889.10040	2822.63270	1.28720	6.42160	4.86450	K562	NAA15
SRSF4	ENSG00000116350.11	5825.44650	5113.87530	0.18790	4.10300	3.21370	K562	NSUN2
SRSF4	ENSG00000116350.11	3571.89990	2869.42880	0.31580	3.02870	2.00620	K562	PCBP2
SRSF4	ENSG00000116350.11	3039.24200	4225.28880	-0.47530	4.66790	3.58860	K562	PCBP3
SRSF4	ENSG00000116350.11	2207.76160	3240.87310	-0.55380	9.85860	8.38340	K562	POLR2G
SRSF4	ENSG00000116350.11	5585.85460	6998.37570	-0.32520	3.22390	2.34430	K562	PUF60
SRSF4	ENSG00000116350.11	6326.59270	7293.50950	-0.20520	2.60390	1.67180	K562	PUM2
SRSF4	ENSG00000116350.11	10447.49870	3358.99350	1.63700	22.47110	20.94740	K562	PUS1
SRSF4	ENSG00000116350.11	9542.41700	3273.12850	1.54360	39.19300	36.87600	K562	RBM15
SRSF4	ENSG00000116350.11	2537.14990	3161.66290	-0.31750	2.48580	1.45810	K562	NELFE
SRSF4	ENSG00000116350.11	2316.09060	1775.64760	0.38320	7.01900	4.57110	K562	RPS10
SRSF4	ENSG00000116350.11	2417.32400	3716.29020	-0.62050	8.19030	6.35980	K562	RPS3
SRSF4	ENSG00000116350.11	6185.25760	5046.18230	0.29350	4.67670	3.63980	K562	SF3A3
SRSF4	ENSG00000116350.11	1513.00180	3588.11600	-1.24580	21.71370	18.55140	K562	SRSF4
SRSF4	ENSG00000116350.11	3827.72160	2510.20840	0.60860	4.23840	2.82670	K562	U2AF1
SRSF4	ENSG00000116350.11	3747.65810	2593.65100	0.53090	3.02760	2.18740	K562	U2AF2
SRSF4	ENSG00000116350.11	4794.54450	5422.35530	-0.17750	2.44200	1.76590	K562	UPF1
SRSF4	ENSG00000116350.11	5474.31800	4824.83620	0.18210	2.81700	1.96320	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SRSF4 is not available on ENCORE database.

21 RBPs can affect the splicing of SRSF4 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486570			29485895	29485998	29486886	29486981	0.06500	0.00027	0.02992	included	HepG2	G3BP1
SE	SRSF4	ENSG00000116350.11	chr1	-	29476614	29476704			29474254	29475738	29481207	29481422	-0.27000	0.00000	0.00000	excluded	HepG2	U2AF1
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486570			29485895	29485998	29486886	29486981	-0.05900	0.00002	0.00063	excluded	HepG2	U2AF1
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486570			29485895	29485998	29486886	29486981	0.09000	0.00046	0.08922	included	HepG2	DKC1
SE	SRSF4	ENSG00000116350.11	chr1	-	29476614	29476704			29474254	29475738	29481207	29481422	-0.32100	0.00000	0.00000	excluded	HepG2	U2AF2
SE	SRSF4	ENSG00000116350.11	chr1	-	29492401	29492576			29486886	29487029	29493240	29493378	-0.15300	0.00075	0.00962	excluded	K562	AQR
SE	SRSF4	ENSG00000116350.11	chr1	-	29476614	29476734			29474254	29475738	29481207	29481422	-0.09500	0.00098	0.01204	excluded	K562	AQR
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486570			29485895	29485998	29486886	29486981	0.06500	0.00041	0.03667	included	HepG2	DDX3X
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486570			29485895	29485998	29486886	29486981	0.14500	0.00003	0.01127	included	HepG2	UCHL5
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486570			29485895	29485998	29486886	29486981	0.09200	0.00000	0.00083	included	HepG2	NCBP2
SE	SRSF4	ENSG00000116350.11	chr1	-	29476614	29476704			29474254	29475738	29481207	29481422	-0.08000	0.00181	0.07022	excluded	HepG2	SFPQ
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486603			29485885	29485998	29486886	29487029	0.07900	0.00080	0.09717	included	HepG2	HNRNPA1
SE	SRSF4	ENSG00000116350.11	chr1	-	29495014	29495150			29486886	29487029	29508157	29508402	0.06300	0.00005	0.00607	included	HepG2	HNRNPL
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486570			29485895	29485998	29486886	29486981	0.06100	0.00078	0.05576	included	HepG2	HNRNPL
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486570			29485895	29485998	29486886	29486981	0.15500	0.00000	0.00002	included	HepG2	SRSF1
SE	SRSF4	ENSG00000116350.11	chr1	-	29476614	29476704			29474254	29475738	29481207	29481422	-0.07200	0.00165	0.04536	excluded	HepG2	SF3A3
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486570			29485895	29485998	29486886	29486981	0.08300	0.00001	0.00190	included	HepG2	IGF2BP3
SE	SRSF4	ENSG00000116350.11	chr1	-	29476614	29476704			29474254	29475738	29481207	29481422	-0.08500	0.00057	0.06444	excluded	HepG2	RBFOX2
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486570			29485895	29485998	29486886	29486981	0.08500	0.00020	0.02592	included	HepG2	SUPV3L1
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486570			29485895	29485998	29486886	29486981	0.09000	0.00008	0.03940	included	HepG2	BCCIP
SE	SRSF4	ENSG00000116350.11	chr1	-	29487268	29487307			29486886	29487029	29492401	29492576	0.17200	0.00341	0.09383	included	K562	TARDBP
SE	SRSF4	ENSG00000116350.11	chr1	-	29495014	29495150			29486886	29487029	29508157	29508402	-0.05700	0.00001	0.00045	excluded	K562	AGGF1
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486603			29485885	29485998	29486886	29487029	0.08900	0.00018	0.04166	included	HepG2	DDX55
SE	SRSF4	ENSG00000116350.11	chr1	-	29486375	29486570			29485895	29485998	29486886	29486981	0.06800	0.00030	0.04749	included	HepG2	KHSRP
A3SS	SRSF4	ENSG00000116350.11	chr1	-	29486886	29487114			29486886	29487029	29492401	29492576	0.14700	0.01839	0.08875	longer	K562	AQR
MXE	SRSF4	ENSG00000116350.11	chr1	-	29492401	29492600	29493240	29493378	29486886	29487029	29495014	29495150	0.12700	0.01047	0.06572	1included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
SRSF4	Product_ID: A303-670A Lot_ID: 1 Source: Bethyl Labs Target Name: SRSF4-human
SRSF4	Product_ID: ARP40591_P050 Lot_ID: QC21851 Source: Aviva Target Name: SRSF4-human

SRSF4

General Information

Functions

Localization(RBPImage: SRSF4)

Domains (AlphaFold: SRSF4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SRSF4 is not avaliable on ENCORE database.

63 proteins are bound to SRSF4 RNA:

eCLIP assay for SRSF4 is not avaliable on ENCORE database.

Diffrential Expression

2,946 differentially expressed genes after Knockdown/Knockout SRSF4 protein :

84 RBPs can affect the gene expression of SRSF4 :

The Knockdown/knockout RNA-Seq assay for SRSF4 is not available on ENCORE database.

21 RBPs can affect the splicing of SRSF4 :

The Knockdown/knockout RNA-Seq assay for SRSF4 is not avaliable on ENCORE database.