SRSF4_BGKLV13_49_CAGATC_L005_R1_001.fastq.gz | ENCODE_DATA/set13/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 792 | HiSeq2000 | 100 | paired-ended | 1 | | | | NT_BGKLV13_1_ATCACG_L001_R1_001.fastq.gz,NT_BGKLV13_2_CGATGT_L001_R1_001.fastq.gz | ENCODE3 | | 13406 |
SRSF4_BGKLV13_49_CAGATC_L005_R2_001.fastq.gz | ENCODE_DATA/set13/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 792 | HiSeq2000 | 100 | paired-ended | 2 | | | | NT_BGKLV13_1_ATCACG_L001_R2_001.fastq.gz,NT_BGKLV13_2_CGATGT_L001_R2_001.fastq.gz | ENCODE3 | | 13458 |
SRSF4_BGKLV13_49_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set13/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 792 | | | | | GRCh38 | V40 | SRSF4_BGKLV13_49_CAGATC_L005_R1_001.fastq.gz,SRSF4_BGKLV13_49_CAGATC_L005_R2_001.fastq.gz | | ENCORE2 | | 13510 |
SRSF4_BGKLV13_49_Signal.Unique.strand+.bw | ENCODE_DATA/set13/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 792 | | | | | GRCh38 | V40 | SRSF4_BGKLV13_49/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13562 |
SRSF4_BGKLV13_49_Signal.Unique.strand-.bw | ENCODE_DATA/set13/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 792 | | | | | GRCh38 | V40 | SRSF4_BGKLV13_49/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13614 |
SRSF4_BGKLV13_49_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set13/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 792 | | | | | GRCh38 | V40 | SRSF4_BGKLV13_49/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13666 |
SRSF4_BGKLV13_49_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set13/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 792 | | | | | GRCh38 | V40 | SRSF4_BGKLV13_49/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13718 |
SRSF4_BGKLV13_49_quant.sf | ENCODE_DATA/set13/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 792 | | | | | GRCh38 | V40 | SRSF4_BGKLV13_49_CAGATC_L005_R1_001.fastq.gz,SRSF4_BGKLV13_49_CAGATC_L005_R2_001.fastq.gz | | ENCORE2 | | 13770 |
SRSF4_BGKLV13_50_ACTTGA_L005_R1_001.fastq.gz | ENCODE_DATA/set13/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 793 | HiSeq2000 | 100 | paired-ended | 1 | | | | NT_BGKLV13_1_ATCACG_L001_R1_001.fastq.gz,NT_BGKLV13_2_CGATGT_L001_R1_001.fastq.gz | ENCODE3 | | 13407 |
SRSF4_BGKLV13_50_ACTTGA_L005_R2_001.fastq.gz | ENCODE_DATA/set13/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 793 | HiSeq2000 | 100 | paired-ended | 2 | | | | NT_BGKLV13_1_ATCACG_L001_R2_001.fastq.gz,NT_BGKLV13_2_CGATGT_L001_R2_001.fastq.gz | ENCODE3 | | 13459 |
SRSF4_BGKLV13_50_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set13/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 793 | | | | | GRCh38 | V40 | SRSF4_BGKLV13_50_ACTTGA_L005_R1_001.fastq.gz,SRSF4_BGKLV13_50_ACTTGA_L005_R2_001.fastq.gz | | ENCORE2 | | 13511 |
SRSF4_BGKLV13_50_Signal.Unique.strand+.bw | ENCODE_DATA/set13/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 793 | | | | | GRCh38 | V40 | SRSF4_BGKLV13_50/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13563 |
SRSF4_BGKLV13_50_Signal.Unique.strand-.bw | ENCODE_DATA/set13/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 793 | | | | | GRCh38 | V40 | SRSF4_BGKLV13_50/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13615 |
SRSF4_BGKLV13_50_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set13/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 793 | | | | | GRCh38 | V40 | SRSF4_BGKLV13_50/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13667 |
SRSF4_BGKLV13_50_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set13/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 793 | | | | | GRCh38 | V40 | SRSF4_BGKLV13_50/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13719 |
SRSF4_BGKLV13_50_quant.sf | ENCODE_DATA/set13/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 793 | | | | | GRCh38 | V40 | SRSF4_BGKLV13_50_ACTTGA_L005_R1_001.fastq.gz,SRSF4_BGKLV13_50_ACTTGA_L005_R2_001.fastq.gz | | ENCORE2 | | 13771 |