NCDN

General Information

Gene Name       : NCDN
Gene ID             : ENSG00000020129.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NCDN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NCDNENSG00000020129.152.074.753.41ENCSR000AEF
HepG2NCDNENSG00000020129.158.822.125.47ENCSR985KAT
K562NCDNENSG00000020129.1519.4210.7515.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NCDN is not avaliable on ENCORE database.



Proteins bound to RNA
  • NCDN RNA is bound by 14 proteins.  







eCLIP assay for NCDN is not avaliable on ENCORE database.





14 proteins are bound to NCDN RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13603208036032158+3'-UTR,intron-Distal5.0720121.47409K562AGGF1
chr13603227936032333+3'-UTR,intron-Distal,intron-Proximal3.428936.64740HepG2HNRNPL
chr13603225636032341+3'-UTR,intron-Distal,intron-Proximal4.2268020.16363K562HNRNPL
chr13603198836032096+3'-UTR,intron-Distal5.076544.55547K562PCBP1
chr13603150736031606+3'-UTR,intron-Distal3.363146.31840K562LIN28B
chr13603203836032162+3'-UTR,intron-Distal3.225323.76326HepG2RBFOX2
chr13603199036032050+3'-UTR,intron-Distal4.9204218.97375K562AGGF1
chr13603198536032071+3'-UTR,intron-Distal5.3803512.57551K562HNRNPL
chr13603197536032067+3'-UTR,intron-Distal3.108085.32599K562GTF2F1
chr13603226836032340+3'-UTR,intron-Distal,intron-Proximal4.7660643.52224K562AGGF1
chr13603228036032331+3'-UTR,intron-Distal,intron-Proximal4.025053.84735HepG2AGGF1
chr13603155636031655+3'-UTR,intron-Distal5.507929.47550K562UPF1
chr13603220936032256+3'-UTR,intron-Distal3.097618.33309K562HNRNPL
chr13602376736023825+5'-UTR,CDS,intron-Distal,intron-Proximal3.609954.46401K562DDX3X
chr13602465636024717+5'-UTR,CDS,intron-Proximal4.811914.69961K562SF3B4
chr13602348436023527+5'-UTR,intron-Proximal5.077074.13847K562AQR
chr13602647436026541+CDS3.587536.09392HepG2RBM15
chr13602670236026808+CDS3.758645.52342HepG2PPIG
chr13602648636026572+CDS5.436566.54449K562RBM15
chr13602935236029405+CDS,intron-Proximal3.520053.32861HepG2U2AF2
chr13602632536026384+CDS3.555643.34231K562RBM15
chr13602688636026976+CDS,intron-Proximal4.074514.75655HepG2PRPF8
chr13602486036024955+intron-Distal,intron-Proximal3.955114.98250K562AQR
chr13602724436027297+intron-Distal4.565745.18780K562AGGF1
chr13602389136023999+intron-Distal,intron-Proximal5.085815.17013K562RBM15
chr13602716636027244+intron-Distal5.103347.43302K562AGGF1
chr13602951036029563+intron-Proximal5.116076.83960K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NCDN is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NCDN is not available on ENCORE database.

  • 115 RBPs can affect the levels of NCDN.  








The Knockdown/knockout RNA-Seq assay for NCDN is not available on ENCORE database.





115 RBPs can affect the gene expression of NCDN :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NCDNENSG00000020129.11488.98560377.787400.372102.772202.16400HepG2ACO1
NCDNENSG00000020129.11882.42540275.764001.6779017.1366015.92740HepG2AKAP1
NCDNENSG00000020129.11362.39760242.499300.579502.970701.89640HepG2AKAP8
NCDNENSG00000020129.11589.92260379.560200.636107.236306.06230HepG2AKAP8L
NCDNENSG00000020129.11423.69470228.137700.893005.363004.28670HepG2ASCC1
NCDNENSG00000020129.11765.67660483.760900.662309.099307.97440HepG2AUH
NCDNENSG00000020129.11377.92300169.182201.159404.821903.66440HepG2BCLAF1
NCDNENSG00000020129.11636.49960265.241601.2628010.353409.29160HepG2BOP1
NCDNENSG00000020129.11525.68930300.245000.808005.440404.05100HepG2CCAR1
NCDNENSG00000020129.11364.12980216.757400.748303.485802.62390HepG2CIRBP
NCDNENSG00000020129.11568.91040377.702700.590906.785205.82750HepG2CKAP4
NCDNENSG00000020129.11320.65650124.477801.365008.727207.39470HepG2CNOT7
NCDNENSG00000020129.11509.48100235.493001.1132015.9245014.63210HepG2CELF1
NCDNENSG00000020129.11782.72280264.088401.5674016.9322015.52480HepG2DDX3X
NCDNENSG00000020129.11494.29670191.550401.367604.872403.88050HepG2DDX55
NCDNENSG00000020129.11370.07480227.028400.704802.490101.90230HepG2DDX6
NCDNENSG00000020129.11237.08030168.296200.494302.409001.74740HepG2DNAJC21
NCDNENSG00000020129.11337.04710166.839001.014402.427801.81070HepG2DNAJC2
NCDNENSG00000020129.11442.50580218.078201.020805.753804.91730HepG2EIF2S1
NCDNENSG00000020129.11270.88090159.429400.764603.531102.51720HepG2EIF3D
NCDNENSG00000020129.11669.80330240.920001.475109.384508.21490HepG2EIF4A3
NCDNENSG00000020129.11545.28110234.726101.215902.936202.22880HepG2EIF4B
NCDNENSG00000020129.11925.90570555.431300.7372011.9689010.86020HepG2ETF1
NCDNENSG00000020129.11473.79220369.163500.359902.025501.31290HepG2EWSR1
NCDNENSG00000020129.11231.58860142.532100.700203.807502.41460HepG2FAM120A
NCDNENSG00000020129.11451.25460243.326500.890904.242503.39880HepG2FXR1
NCDNENSG00000020129.11540.02560225.590401.259209.479208.28520HepG2G3BP1
NCDNENSG00000020129.11274.09200141.945000.949206.165704.83030HepG2GEMIN5
NCDNENSG00000020129.11209.64310115.234800.863303.721202.42740HepG2GRSF1
NCDNENSG00000020129.11181.49190105.283200.785503.157701.69730HepG2HNRNPA0
NCDNENSG00000020129.11321.88440169.908900.921706.605705.67080HepG2HNRNPA1
NCDNENSG00000020129.11326.47060232.709100.488302.913201.95740HepG2HNRNPA2B1
NCDNENSG00000020129.11200.76160102.807900.965404.798302.93430HepG2HNRNPAB
NCDNENSG00000020129.11345.54290189.001800.870403.411902.64860HepG2HNRNPC
NCDNENSG00000020129.11379.41600230.655500.717906.683605.68090HepG2HNRNPL
NCDNENSG00000020129.11350.89850254.601700.462702.318901.44720HepG2HNRNPM
NCDNENSG00000020129.11387.51980187.751501.0453012.4791011.26990HepG2HNRNPU
NCDNENSG00000020129.11405.59310302.543200.422802.440001.75830HepG2IGF2BP1
NCDNENSG00000020129.11666.33690229.261201.5392021.4345019.76240HepG2IGF2BP2
NCDNENSG00000020129.11460.85340215.338901.097602.747601.76880HepG2IGF2BP3
NCDNENSG00000020129.11186.57870118.634500.653202.479001.36810HepG2KHDRBS1
NCDNENSG00000020129.11774.39150317.283101.2872014.3793012.52270HepG2LARP4
NCDNENSG00000020129.11561.53400243.412601.205908.650507.50640HepG2MAGOH
NCDNENSG00000020129.11582.77440244.734501.2516010.726609.54480HepG2MATR3
NCDNENSG00000020129.11410.48220166.842301.298702.755201.70530HepG2METAP2
NCDNENSG00000020129.11697.28620250.466501.4770013.7666012.42080HepG2NCBP2
NCDNENSG00000020129.11523.70710176.077801.572407.965406.08780HepG2NONO
NCDNENSG00000020129.11132.08180233.58200-0.822503.964403.07460HepG2NSUN2
NCDNENSG00000020129.11283.03270185.829900.606903.244402.33420HepG2PARN
NCDNENSG00000020129.11636.72850264.452301.2676014.9327013.70460HepG2PCBP1
NCDNENSG00000020129.11249.52060167.457700.575303.240202.44840HepG2PPIL4
NCDNENSG00000020129.11641.12870269.138901.2522019.7191018.50960HepG2PTBP1
NCDNENSG00000020129.11355.34080239.681900.568003.406302.75410HepG2PUF60
NCDNENSG00000020129.11777.88420254.433401.6122047.1017045.26610HepG2PUM1
NCDNENSG00000020129.11483.19770254.247200.926309.860608.63510HepG2PUM2
NCDNENSG00000020129.11788.74150384.800601.0353021.4623020.04260HepG2PUS1
NCDNENSG00000020129.11417.46970291.380100.518702.220001.65030HepG2QKI
NCDNENSG00000020129.11385.22980152.636501.335507.874606.72150HepG2RAVER1
NCDNENSG00000020129.11811.37680464.235900.8054011.8876010.96840HepG2RBM22
NCDNENSG00000020129.11390.45580264.485500.561902.443001.80590HepG2RBM25
NCDNENSG00000020129.11323.36090158.503801.028503.400102.22350HepG2RCC2
NCDNENSG00000020129.11466.91300299.485200.640603.848903.23070HepG2NELFE
NCDNENSG00000020129.11243.34860150.134500.696702.218301.37120HepG2RPS10
NCDNENSG00000020129.11362.00980155.153101.2222011.6126010.45870HepG2RPS19
NCDNENSG00000020129.11392.63870179.979201.125305.754004.62600HepG2RPS2
NCDNENSG00000020129.11257.61580125.018301.043005.838004.67790HepG2RPS3A
NCDNENSG00000020129.11234.43970167.195400.487602.450401.83830HepG2SAFB2
NCDNENSG00000020129.11278.05540155.686700.836603.779402.67880HepG2SERBP1
NCDNENSG00000020129.11261.3568090.100001.536302.993201.47150HepG2SFPQ
NCDNENSG00000020129.11323.16010229.818600.491703.167002.42410HepG2SLBP
NCDNENSG00000020129.11320.79970194.968500.718306.003905.11310HepG2SMN1
NCDNENSG00000020129.11352.56760156.216301.174307.212405.61560HepG2SMNDC1
NCDNENSG00000020129.11717.28160290.146901.305703.387502.51830HepG2SNRNP70
NCDNENSG00000020129.11693.73170524.334000.403803.784903.22690HepG2SRFBP1
NCDNENSG00000020129.11493.55120236.651501.0603014.6337013.35620HepG2SRSF5
NCDNENSG00000020129.11484.30170301.862200.681906.741905.73280HepG2SRSF7
NCDNENSG00000020129.11390.73600263.091700.570502.956201.63170HepG2SSRP1
NCDNENSG00000020129.11505.33890269.137500.9088011.9573010.81780HepG2SUCLG1
NCDNENSG00000020129.11117.72810262.93870-1.159303.405102.79300HepG2TAF15
NCDNENSG00000020129.11315.22220127.736501.303108.198206.66130HepG2TFIP11
NCDNENSG00000020129.11309.69000182.399700.763604.606303.99570HepG2TIAL1
NCDNENSG00000020129.11461.43110184.068901.3258020.9930019.62300HepG2TRIM56
NCDNENSG00000020129.11396.77510234.159800.760705.910904.56990HepG2TUFM
NCDNENSG00000020129.11201.9830096.403601.067002.404201.49310HepG2U2AF2
NCDNENSG00000020129.11241.67820112.570801.102204.932903.91400HepG2UCHL5
NCDNENSG00000020129.11437.37570346.804800.334602.195701.56170HepG2UPF1
NCDNENSG00000020129.11465.47030356.462100.384802.624001.59810HepG2UTP18
NCDNENSG00000020129.11581.30320334.825400.7958010.359509.31750HepG2UTP3
NCDNENSG00000020129.11297.69340167.965800.825602.944801.84960HepG2XRCC6
NCDNENSG00000020129.11507.58270381.418000.412203.545802.94790HepG2ZNF622
NCDNENSG00000020129.11564.61630735.33400-0.381103.489902.86560K562AGGF1
NCDNENSG00000020129.111372.423201078.612400.347403.518202.10480K562APOBEC3C
NCDNENSG00000020129.11854.209401089.50460-0.351001.868401.36810K562AQR
NCDNENSG00000020129.11627.01470450.804900.475903.266102.10170K562CCAR1
NCDNENSG00000020129.111056.40590846.963000.318702.899201.76250K562CPEB4
NCDNENSG00000020129.11560.58950407.884500.458703.429402.23340K562CSTF2
NCDNENSG00000020129.11606.30350471.341600.363202.843901.50550K562DDX27
NCDNENSG00000020129.11629.27170451.881200.477603.813102.56290K562DDX3X
NCDNENSG00000020129.111375.22880876.443300.6498012.5087011.23020K562DDX47
NCDNENSG00000020129.11667.69390823.43350-0.302502.579201.73820K562DKC1
NCDNENSG00000020129.11693.34070496.318200.482205.045203.38600K562EIF2S1
NCDNENSG00000020129.11377.61520199.245000.922308.741207.32950K562EIF3G
NCDNENSG00000020129.11590.56200425.131800.474104.261002.77410K562EIF4B
NCDNENSG00000020129.11826.25250490.953100.7509010.956209.83820K562FXR1
NCDNENSG00000020129.1134.94140137.83770-1.9800010.487908.94080K562G3BP2
NCDNENSG00000020129.111278.87580922.191800.471602.483201.63630K562HNRNPU
NCDNENSG00000020129.11634.92020835.14200-0.395402.284001.55680K562HSPD1
NCDNENSG00000020129.11560.80600268.251901.063804.469603.03670K562IGF2BP2
NCDNENSG00000020129.11417.93330272.732200.615703.929702.45670K562IGF2BP3
NCDNENSG00000020129.11597.80240812.05080-0.441903.572802.62130K562KIF1C
NCDNENSG00000020129.11397.17600281.634400.495902.384201.60140K562MAGOH
NCDNENSG00000020129.11547.18040281.019200.961205.893404.47500K562MATR3
NCDNENSG00000020129.11681.52260909.69460-0.416603.436502.40510K562MBNL1
NCDNENSG00000020129.11998.19800790.727900.336002.158801.43940K562MTPAP
NCDNENSG00000020129.11376.63920637.62530-0.759505.278003.92110K562NAA15
NCDNENSG00000020129.11565.47480419.007400.432402.558401.69440K562PSIP1
NCDNENSG00000020129.11602.62330273.646901.138808.836207.69100K562PTBP1
NCDNENSG00000020129.11545.70860739.35420-0.438102.773502.17950K562RBM15
NCDNENSG00000020129.11407.09530262.237500.634404.533303.42710K562RBM22
NCDNENSG00000020129.11398.98480255.751900.641503.014401.54240K562RBM34
NCDNENSG00000020129.11561.72640382.526300.554202.928501.90720K562RCC2
NCDNENSG00000020129.11454.64580256.603700.825102.321601.41440K562RPS3
NCDNENSG00000020129.11970.59210609.081400.672106.566004.90630K562SAFB
NCDNENSG00000020129.11573.44200362.600200.661205.326903.76570K562SRFBP1
NCDNENSG00000020129.11387.32570247.633300.645203.702402.45780K562SRSF4
NCDNENSG00000020129.11442.16650253.466800.802703.755102.49500K562SRSF5
NCDNENSG00000020129.1166.15090135.29880-1.032303.410501.71540K562TAF15
NCDNENSG00000020129.11602.15980271.465001.149308.668607.32530K562TARDBP
NCDNENSG00000020129.11524.72060261.876901.002609.796308.13970K562TIA1
NCDNENSG00000020129.11461.57360257.144000.843907.422105.42300K562TRA2A
NCDNENSG00000020129.1168.34810137.94020-1.013104.647403.61230K562U2AF2
NCDNENSG00000020129.111178.42440931.583100.339003.891303.05160K562UPF1
NCDNENSG00000020129.11716.48620481.602400.573003.724202.24650K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NCDN is not available on ENCORE database.





2 RBPs can affect the splicing of NCDN :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENCDNENSG00000020129.11chr1+360279923602823436025926360268953602880236029027-0.069000.007330.06352excludedK562AQR
MXENCDNENSG00000020129.11chr1+3602799236028234360288023602902736025926360268953602936736029510-0.227000.001620.060192includedHepG2BCCIP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NCDN is not avaliable on ENCORE database.