SMN1

General Information

Gene Name       : SMN1
Gene ID             : ENSG00000172062.16
Essential Gene : Yes

Functions

Localization(RBPImage: SMN1)

Domains (AlphaFold: SMN1)


Antibody Validation

 View validation images for all SMN1 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMN1ENSG00000172062.1637.4644.2840.87ENCSR000AEF
HepG2SMN1ENSG00000172062.1633.1255.0644.09ENCSR985KAT
K562SMN1ENSG00000172062.1656.5757.4457.00ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq SMN1-BGKLV24-K562ENCSR129ROESMN1K562ReleasedENCSR419JMU   shRNAKD% = 52.5,57.2
knockdown followed by RNA-seq SMN1-BGHLV20-HepG2ENCSR090UMISMN1HepG2ReleasedENCSR305XWT   shRNAKD% = 64.2,66.4






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
SMN1ENCAB135MQHRN077PW1BGHLV20-55, Released, ENCODE3BGKLV24-59, Released, ENCODE3
SMN1ENCAB606FBUA301-863A1BGHLV20-55, Released, ENCODE4BGKLV24-59, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
SMN1K562shRNAENCSR129ROEENCSR419JMUSMN1_BGKLV24_59B,SMN1_BGKLV24_60Bnon-target_BGKLV24_1B,non-target_BGKLV24_2B52.5,57.2ReleasedENCODE3
SMN1HepG2shRNAENCSR090UMIENCSR305XWTSMN1-BGHLV20-55_17736,SMN1-BGHLV20-56_17737non-target-BGHLV20-1_17706,non-target-BGHLV20-2_1770764.2,66.4ReleasedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    SMN1: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Nucleolus
  • Cytoplasm
  • Compartment/Organelle
  • Cytosolic












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    SMN1Product_ID: RN077PW
    Lot_ID: 1
    Source: MBLI
    Target Name: SMN1-human    		 SMN1_Secondary_Western.png<br>Caption: Wesrn blot following shRNA against SMN1 in K562 and HepG2 whole cell lysate using SMN1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against SMN1. Lanes 5-8 follow the same pattern, but in HepG2. SMN1 protein appears as the green band, Tubulin serves as a control and appears in red.
    		 SMN1_Secondary_Western.png<br>Caption: Wesrn blot following shRNA against SMN1 in K562 and HepG2 whole cell lysate using SMN1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against SMN1. Lanes 5-8 follow the same pattern, but in HepG2. SMN1 protein appears as the green band, Tubulin serves as a control and appears in red.
    SMN1Product_ID: A301-863A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: SMN1-human    		 SMN1-HEPG2-A301-863A.png<br>Caption: Western blot following shRNA against SMN1 in HepG2 whole cell lysate using SMN1 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNA against SMN1. SMN1 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








    RNA Targets

    • eCLIP assay for SMN1 is not avaliable on ENCORE database.



    Proteins bound to RNA
    • SMN1 RNA is bound by 1 proteins.  







    eCLIP assay for SMN1 is not avaliable on ENCORE database.





    1 proteins are bound to SMN1 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr57024775470247816+CDS,intron-Distal,intron-Proximal3.477613.55754HepG2U2AF2
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for SMN1 is not avaliable on ENCORE database.



    Diffrential Expression
    • 7,002 differentially expressed genes after Knockdown/Knockout SMN1 protein.  





    • 80 RBPs can affect the levels of SMN1.  







    7,002 differentially expressed genes after Knockdown/Knockout SMN1 protein :

    Only display 100 entries as example. Please click "View All" button to see all 7,002 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    TSPAN6ENSG00000000003.101654.920702001.24820-0.274104.409603.63130HepG2SMN1
    C1orf112ENSG00000000460.12247.46120378.09250-0.611503.205202.52090HepG2SMN1
    FUCA2ENSG00000001036.94388.764003689.968000.250105.390004.54310HepG2SMN1
    NFYAENSG00000001167.101685.591801070.096000.6554018.3855016.95010HepG2SMN1
    NIPAL3ENSG00000001461.12208.61070297.31860-0.511203.105002.42880HepG2SMN1
    SEMA3FENSG00000001617.7599.50410323.010800.8921014.2538012.97080HepG2SMN1
    MYH16ENSG00000002079.829.883309.729301.618802.459201.84760HepG2SMN1
    BADENSG00000002330.9129.7757049.234901.398207.364006.39240HepG2SMN1
    LAP3ENSG00000002549.82409.272101997.587700.270204.783003.97490HepG2SMN1
    CD99ENSG00000002586.132308.488701754.338900.395909.108508.04930HepG2SMN1
    MAD1L1ENSG00000002822.11330.22630207.035100.673505.406004.55760HepG2SMN1
    LASP1ENSG00000002834.135982.745007015.56070-0.229805.524604.66720HepG2SMN1
    M6PRENSG00000003056.33055.890202299.340500.4103011.148109.99390HepG2SMN1
    DBNDD1ENSG00000003249.91378.28940671.697901.0369035.0449033.19810HepG2SMN1
    CASP10ENSG00000003400.10397.28090690.60700-0.7977013.4570012.20330HepG2SMN1
    TFPIENSG00000003436.104715.238208000.71880-0.7628052.7219050.58940HepG2SMN1
    SLC7A2ENSG00000003989.122138.259505291.74460-1.30730120.34620117.53460HepG2SMN1
    PLXND1ENSG00000004399.83006.197201715.389500.8093037.7558035.86360HepG2SMN1
    AK2ENSG00000004455.122522.201703382.00700-0.423207.696506.70660HepG2SMN1
    KDM1AENSG00000004487.112999.359403360.46260-0.164002.417701.81090HepG2SMN1
    NDUFAB1ENSG00000004779.5540.281501124.52280-1.0575023.9396022.34910HepG2SMN1
    SLC25A13ENSG00000004864.9965.213401559.66120-0.6923019.1956017.73500HepG2SMN1
    ST7ENSG00000004866.14288.20570369.43220-0.358202.107701.53530HepG2SMN1
    CDC27ENSG00000004897.72642.701503129.24610-0.243804.569203.77830HepG2SMN1
    HCCSENSG00000004961.10439.12320321.174800.451202.516201.89830HepG2SMN1
    PRSS22ENSG00000005001.514.510201.103403.716902.850402.19840HepG2SMN1
    UPF1ENSG00000005007.81646.179301228.502900.422108.224707.20870HepG2SMN1
    SLC25A5ENSG00000005022.52909.925603980.00000-0.4518015.3368014.00910HepG2SMN1
    DHX33ENSG00000005100.81604.590001395.041200.201802.364001.76320HepG2SMN1
    LIG3ENSG00000005156.7600.46060785.04550-0.386704.186903.42500HepG2SMN1
    ACSM3ENSG00000005187.7500.95290694.72320-0.471805.399104.55140HepG2SMN1
    AC004381.6ENSG00000005189.15179.18720272.08640-0.602603.942103.19680HepG2SMN1
    SPPL2BENSG00000005206.12304.39510188.478500.691405.214904.37950HepG2SMN1
    FAM214BENSG00000005238.15242.18030181.340600.417302.039001.47380HepG2SMN1
    CREBBPENSG00000005339.81792.659801470.483400.285704.427403.64790HepG2SMN1
    GCFC2ENSG00000005436.9414.70830542.42620-0.387302.274701.68170HepG2SMN1
    WDR54ENSG00000005448.12121.97180251.98450-1.046808.773407.72950HepG2SMN1
    CROTENSG00000005469.7318.38950189.563600.748004.769903.96370HepG2SMN1
    RHBDD2ENSG00000005486.12615.06490357.642600.7821011.6172010.44130HepG2SMN1
    SOX8ENSG00000005513.932.8660013.518001.281601.948901.39360HepG2SMN1
    IBTKENSG00000005700.101937.977602429.39980-0.326006.712405.77920HepG2SMN1
    ZNF195ENSG00000005801.12721.46670528.262600.449605.177004.34370HepG2SMN1
    ITGA3ENSG00000005884.13499.90230130.304101.9397029.7204027.97680HepG2SMN1
    ZFXENSG00000005889.11331.76450586.05010-0.8209012.2346011.03310HepG2SMN1
    ASB4ENSG00000005981.8410.80600224.305200.872909.961508.86080HepG2SMN1
    CRLF1ENSG00000006016.66264.883803215.942300.9619073.1236070.72880HepG2SMN1
    TMEM98ENSG00000006042.71218.142501461.01280-0.262303.385202.68570HepG2SMN1
    MAP3K14ENSG00000006062.9121.1558080.242800.594301.949501.39400HepG2SMN1
    TMEM132AENSG00000006118.10851.70210438.656900.9572021.0175019.49400HepG2SMN1
    AP2B1ENSG00000006125.123801.312104638.05610-0.287007.171706.21140HepG2SMN1
    CX3CL1ENSG00000006210.61723.785501416.995200.282603.951003.20440HepG2SMN1
    SPATA20ENSG00000006282.151667.273701054.888500.6603018.3545016.92000HepG2SMN1
    TNFRSF12AENSG00000006327.9782.35850442.832400.8210015.4559014.12380HepG2SMN1
    BAIAP2L1ENSG00000006453.91200.16230767.166500.6455013.9715012.69870HepG2SMN1
    JHDM1DENSG00000006459.61254.169802102.03240-0.7451026.8333025.16610HepG2SMN1
    FARP2ENSG00000006607.9792.488701044.14730-0.397905.573404.71170HepG2SMN1
    GTF2IRD1ENSG00000006704.6574.15120432.091300.410003.772103.04100HepG2SMN1
    PAF1ENSG00000006712.101229.68870806.894100.6077013.0040011.76930HepG2SMN1
    ELAC2ENSG00000006744.141181.85340833.014300.504508.924307.87400HepG2SMN1
    ARSDENSG00000006756.11367.55690243.505200.593904.889104.07360HepG2SMN1
    ADIPOR2ENSG00000006831.91928.156803138.51080-0.7029030.2449028.49190HepG2SMN1
    CCDC124ENSG00000007080.6289.91300123.131901.2353012.5984011.38100HepG2SMN1
    PAFAH1B1ENSG00000007168.81495.543301914.43980-0.356306.807505.86830HepG2SMN1
    TRAPPC6AENSG00000007255.681.8555046.677800.810202.233901.64620HepG2SMN1
    PAX6ENSG00000007372.16147.0153048.204701.6086010.123309.01660HepG2SMN1
    RPUSD1ENSG00000007376.3139.0709061.226001.183506.089005.19350HepG2SMN1
    RHBDF1ENSG00000007384.11380.93230216.084500.817808.291107.27280HepG2SMN1
    BAIAP3ENSG00000007516.9140.3558075.920700.886404.054403.30030HepG2SMN1
    TSR3ENSG00000007520.3232.0973099.905101.216006.530705.60850HepG2SMN1
    PIGQENSG00000007541.10205.12170117.596400.802504.773103.96620HepG2SMN1
    E2F2ENSG00000007968.6122.94740174.70180-0.506902.130401.55410HepG2SMN1
    CDK11AENSG00000008128.18657.92020423.133500.636708.708607.66840HepG2SMN1
    CYTH3ENSG00000008256.11292.48280210.787200.472502.838802.18800HepG2SMN1
    SYPL1ENSG00000008282.31082.007901345.44450-0.314402.928202.26860HepG2SMN1
    SPAG9ENSG00000008294.161618.697103366.76020-1.0565045.7844043.75490HepG2SMN1
    MPNDENSG00000008382.11170.0234092.730600.874504.608703.81400HepG2SMN1
    MGST1ENSG00000008394.81534.787302021.50110-0.397408.508507.47860HepG2SMN1
    ST3GAL1ENSG00000008513.10769.696201184.23570-0.6216013.0234011.78800HepG2SMN1
    IL32ENSG00000008517.122795.307001641.652900.7678033.0792031.27110HepG2SMN1
    PKD1ENSG00000008710.13460.34900323.471000.509004.524503.73720HepG2SMN1
    MED24ENSG00000008838.131952.009401706.102000.194202.393501.78970HepG2SMN1
    SEC62ENSG00000008952.121803.492902475.82560-0.4571012.1691010.96930HepG2SMN1
    RPS20ENSG00000008988.55432.869204598.534900.240403.540702.82780HepG2SMN1
    CSDE1ENSG00000009307.119599.1113011075.85620-0.206405.148504.31620HepG2SMN1
    REV3LENSG00000009413.111736.232501477.273200.232903.027402.35830HepG2SMN1
    FAM76AENSG00000009780.11141.1062097.659400.530901.851101.30740HepG2SMN1
    POMT2ENSG00000009830.7601.37060447.761200.425404.188303.42630HepG2SMN1
    VTA1ENSG00000009844.111724.554301969.59700-0.191702.352601.75330HepG2SMN1
    MLXIPLENSG00000009950.111979.228401360.805700.540406.110105.21290HepG2SMN1
    BAZ1BENSG00000009954.62349.289602843.26630-0.275305.273704.43440HepG2SMN1
    RANBP9ENSG00000010017.91343.922901574.10620-0.228102.914702.25660HepG2SMN1
    SPRTNENSG00000010072.11237.06850154.895200.613903.535502.82290HepG2SMN1
    ZNF207ENSG00000010244.122774.680503610.68440-0.3800010.475609.35490HepG2SMN1
    UQCRC1ENSG00000010256.62361.698902969.38320-0.330307.514206.53350HepG2SMN1
    CD9ENSG00000010278.7398.72540234.474100.765907.742406.75110HepG2SMN1
    NCAPD2ENSG00000010292.82499.794904281.45530-0.7763042.7578040.78960HepG2SMN1
    IFFO1ENSG00000010295.15383.59610212.183700.854208.946707.89480HepG2SMN1
    NISCHENSG00000010322.111210.14210932.709000.375605.533004.67490HepG2SMN1
    HFEENSG00000010704.14108.55910179.39240-0.724603.696802.97150HepG2SMN1
    SCMH1ENSG00000010803.12703.401601088.80370-0.6303012.6632011.44330HepG2SMN1
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    80 RBPs can affect the gene expression of SMN1 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    SMN1ENSG00000172062.12787.36100930.96600-0.241702.115201.56930HepG2ACO1
    SMN1ENSG00000172062.12977.544301341.31760-0.456406.514305.53010HepG2AUH
    SMN1ENSG00000172062.12521.60680764.52720-0.551603.749602.71610HepG2BCLAF1
    SMN1ENSG00000172062.12503.29890879.80320-0.805804.483602.93510HepG2BUD13
    SMN1ENSG00000172062.12694.43300969.92730-0.482003.600202.72660HepG2CIRBP
    SMN1ENSG00000172062.12915.29380672.185800.445302.029801.38020HepG2CNOT7
    SMN1ENSG00000172062.12857.872901161.59020-0.437305.280104.44480HepG2CELF1
    SMN1ENSG00000172062.12628.04550890.64960-0.504006.175405.24040HepG2DKC1
    SMN1ENSG00000172062.12561.18680762.14840-0.441602.459201.42070HepG2AGO1
    SMN1ENSG00000172062.12513.35410976.07270-0.9270010.613409.49930HepG2EIF2S1
    SMN1ENSG00000172062.12657.348101009.57280-0.619005.208304.30880HepG2G3BP1
    SMN1ENSG00000172062.12774.611801071.63990-0.468303.563402.54770HepG2G3BP2
    SMN1ENSG00000172062.12844.351901728.46880-1.033604.007103.24960HepG2GPKOW
    SMN1ENSG00000172062.12716.26940888.72960-0.311203.013301.99780HepG2HDGF
    SMN1ENSG00000172062.12810.518401147.81860-0.502002.760901.82640HepG2HNRNPA2B1
    SMN1ENSG00000172062.12604.31980884.48870-0.549502.036301.43100HepG2HNRNPC
    SMN1ENSG00000172062.12842.344001091.57190-0.373904.198403.33480HepG2HNRNPF
    SMN1ENSG00000172062.12970.540501137.61820-0.229202.109701.51090HepG2HNRNPL
    SMN1ENSG00000172062.12725.638101649.48960-1.184705.253304.41560HepG2HNRNPLL
    SMN1ENSG00000172062.12746.834701026.24980-0.458503.174002.45650HepG2IGF2BP2
    SMN1ENSG00000172062.12594.17670897.52060-0.595102.231501.56520HepG2ILF2
    SMN1ENSG00000172062.12722.725501032.15500-0.514103.167702.08540HepG2KHSRP
    SMN1ENSG00000172062.121037.977401681.77930-0.696202.665901.71730HepG2MTPAP
    SMN1ENSG00000172062.12503.26230794.43800-0.658603.197702.01760HepG2NONO
    SMN1ENSG00000172062.12521.31840869.80030-0.738502.961002.08790HepG2PARN
    SMN1ENSG00000172062.12829.412901149.10970-0.470404.503203.76090HepG2PCBP1
    SMN1ENSG00000172062.12801.861301169.25610-0.544208.619407.76340HepG2PTBP1
    SMN1ENSG00000172062.12944.915801182.19590-0.323202.380101.82080HepG2PUF60
    SMN1ENSG00000172062.12744.44070948.23080-0.349101.880201.35180HepG2PUS1
    SMN1ENSG00000172062.12599.823201287.12270-1.1015025.9943024.73080HepG2RBM22
    SMN1ENSG00000172062.12860.658001149.28560-0.417203.907503.11710HepG2RBM25
    SMN1ENSG00000172062.12906.291701301.27480-0.521907.954707.12150HepG2NELFE
    SMN1ENSG00000172062.12967.674201211.95160-0.324703.551102.86430HepG2RECQL
    SMN1ENSG00000172062.122151.427601229.176300.807507.405206.26530HepG2SF3A3
    SMN1ENSG00000172062.12912.847901217.35730-0.415305.275904.50470HepG2SF3B4
    SMN1ENSG00000172062.12511.28930912.61830-0.835903.551602.83770HepG2SMN1
    SMN1ENSG00000172062.12746.055501033.74020-0.470502.915302.35210HepG2SRSF9
    SMN1ENSG00000172062.12896.325201262.27110-0.493907.661806.89100HepG2SSB
    SMN1ENSG00000172062.12927.588701142.10040-0.300102.783602.22170HepG2TAF15
    SMN1ENSG00000172062.12432.22820577.21780-0.417302.437201.49410HepG2TFIP11
    SMN1ENSG00000172062.12938.347701222.59200-0.381702.229201.48220HepG2UBE2L3
    SMN1ENSG00000172062.12386.89470508.72280-0.394902.123401.45900HepG2UCHL5
    SMN1ENSG00000172062.12859.628401090.08700-0.342703.941203.13060HepG2UPF1
    SMN1ENSG00000172062.12749.14610940.69680-0.328503.557802.81110HepG2ZC3H8
    SMN1ENSG00000172062.12880.866001198.89330-0.444707.466306.68070HepG2ZNF622
    SMN1ENSG00000172062.12610.80670949.62710-0.636604.501502.81590HepG2ZRANB2
    SMN1ENSG00000172062.122484.564601576.475300.6562017.5958016.28670K562AGGF1
    SMN1ENSG00000172062.122494.497501640.389600.604608.449607.24610K562AKAP8L
    SMN1ENSG00000172062.123561.669802267.719000.651209.846308.84370K562AQR
    SMN1ENSG00000172062.122242.357901721.155200.381505.279003.97070K562ATP5C1
    SMN1ENSG00000172062.121428.789902097.69380-0.554004.719503.56820K562BOP1
    SMN1ENSG00000172062.121383.610901877.24270-0.440203.522101.88160K562BUD13
    SMN1ENSG00000172062.121411.395002230.39380-0.6602011.295609.69440K562CPSF6
    SMN1ENSG00000172062.12911.052801159.49520-0.347902.911801.84110K562DDX3X
    SMN1ENSG00000172062.123181.590502631.905400.273504.022603.25630K562DDX47
    SMN1ENSG00000172062.122612.029501765.204500.5652011.913609.84640K562DKC1
    SMN1ENSG00000172062.12965.779901273.60910-0.399205.259603.56590K562EIF2S1
    SMN1ENSG00000172062.121229.587901809.69120-0.5576010.269009.01860K562EIF2S2
    SMN1ENSG00000172062.121083.83360707.156100.615903.361102.24350K562EIF3A
    SMN1ENSG00000172062.121404.723501008.333200.478206.603405.38890K562EIF3G
    SMN1ENSG00000172062.12865.011301211.38760-0.485904.771603.69340K562EIF4A3
    SMN1ENSG00000172062.121455.906602269.48230-0.640408.710207.15150K562FMR1
    SMN1ENSG00000172062.121261.649201923.63850-0.608506.629305.15520K562FTO
    SMN1ENSG00000172062.121295.155802129.43190-0.7173011.513009.86630K562GPKOW
    SMN1ENSG00000172062.12462.966301305.82550-1.4960036.0968034.01820K562HNRNPC
    SMN1ENSG00000172062.12816.549701166.04470-0.514005.318203.66760K562HNRNPF
    SMN1ENSG00000172062.122132.373901593.324300.420303.228002.21670K562HNRNPM
    SMN1ENSG00000172062.122346.332401740.878900.430502.371701.61670K562KIF1C
    SMN1ENSG00000172062.121443.623902078.58220-0.525906.520005.14820K562METAP2
    SMN1ENSG00000172062.122540.775303144.21940-0.307402.494801.42490K562MSI2
    SMN1ENSG00000172062.122266.925901366.962900.729703.102702.16090K562NAA15
    SMN1ENSG00000172062.121605.753602024.19740-0.334106.681005.58870K562NSUN2
    SMN1ENSG00000172062.12954.320401285.61910-0.429903.137001.59000K562NUSAP1
    SMN1ENSG00000172062.121925.028101288.178500.579402.357601.45770K562PABPN1
    SMN1ENSG00000172062.121638.069301029.551000.669907.923706.64700K562PRPF8
    SMN1ENSG00000172062.12794.227901170.79290-0.559905.792904.41100K562PSIP1
    SMN1ENSG00000172062.122739.836603354.21470-0.291903.877202.73800K562PUM2
    SMN1ENSG00000172062.123000.430601626.848200.8830016.2184014.94410K562PUS1
    SMN1ENSG00000172062.122381.420701585.092100.5872011.2423010.06760K562RBM15
    SMN1ENSG00000172062.12834.056701068.11750-0.356903.037101.99410K562RCC2
    SMN1ENSG00000172062.121673.479601378.160500.280002.432501.63310K562SF3B4
    SMN1ENSG00000172062.12961.246302184.79410-1.1845013.7011010.09090K562SMN1
    SMN1ENSG00000172062.121495.584001005.821200.572206.699705.41190K562SYNCRIP
    SMN1ENSG00000172062.12734.648401126.11660-0.616205.742704.34300K562TIAL1
    SMN1ENSG00000172062.12893.907801196.26470-0.420303.462202.38320K562TRIM56
    SMN1ENSG00000172062.121713.031501326.795500.368504.042503.07190K562U2AF2
    SMN1ENSG00000172062.121294.095902146.29270-0.7299016.0471014.48200K562UPF1
    SMN1ENSG00000172062.121243.217401668.82960-0.424803.368702.03780K562UTP3
    SMN1ENSG00000172062.121517.591901836.52580-0.275202.381001.56700K562WDR3
    SMN1ENSG00000172062.121634.321201909.69820-0.224702.837901.98090K562WDR43
    SMN1ENSG00000172062.122087.463602554.73220-0.291402.513201.69860K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for SMN1 is not available on ENCORE database.





    1 RBPs can affect the splicing of SMN1 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SESMN1ENSG00000172062.12chr5+702404847024058070238544702386977024189270242003-0.264000.000010.00021excludedK562AQR
    A3SSSMN1ENSG00000172062.12chr5+7024823870248407702482657024840770247601702478210.212000.000000.00000longerK562AQR

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for SMN1 is not avaliable on ENCORE database.