TSPAN6

General Information

Gene Name       : TSPAN6
Gene ID             : ENSG00000000003.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TSPAN6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TSPAN6ENSG00000000003.140.120.000.06ENCSR000AEF
HepG2TSPAN6ENSG00000000003.1453.3690.9872.17ENCSR985KAT
K562TSPAN6ENSG00000000003.140.030.000.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TSPAN6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TSPAN6 RNA is bound by 8 proteins.  







eCLIP assay for TSPAN6 is not avaliable on ENCORE database.





8 proteins are bound to TSPAN6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX9988414199884233-3'-UTR,intron-Distal3.908227.63804HepG2FUBP3
chrX9988461599884663-3'-UTR,intron-Distal3.308574.82028HepG2FUBP3
chrX9988575599885782-3'-UTR,intron-Distal,intron-Proximal3.284434.75394HepG2LARP4
chrX9988429399884397-3'-UTR,intron-Distal3.669253.08588HepG2IGF2BP3
chrX9989174599891778-5'-UTR,intron-Distal,intron-Proximal4.427203.32488HepG2DDX3X
chrX9989164399891745-5'-UTR,CDS,intron-Distal,intron-Proximal5.4692343.39904HepG2DDX3X
chrX9989145299891613-CDS,intron-Distal4.445635.34865HepG2EFTUD2
chrX9989068599890734-CDS,intron-Distal4.6262910.08705HepG2LIN28B
chrX9989068799890734-CDS,intron-Distal4.850907.91835HepG2RPS3
chrX9989055799890609-CDS,intron-Distal3.786194.95361HepG2SND1
chrX9988748099887537-CDS,intron-Distal,intron-Proximal4.339653.48040HepG2SND1
chrX9989055999890611-CDS,intron-Distal3.998846.19394HepG2RPS3
chrX9988840299888468-CDS,intron-Distal,intron-Proximal4.452184.23209HepG2SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TSPAN6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TSPAN6 is not available on ENCORE database.

  • 55 RBPs can affect the levels of TSPAN6.  








The Knockdown/knockout RNA-Seq assay for TSPAN6 is not available on ENCORE database.





55 RBPs can affect the gene expression of TSPAN6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TSPAN6ENSG00000000003.101932.303701537.646100.329502.337901.46960HepG2ABCF1
TSPAN6ENSG00000000003.103505.082402806.567400.320502.076201.60840HepG2AKAP1
TSPAN6ENSG00000000003.101660.746901998.97470-0.267403.279302.45280HepG2AKAP8L
TSPAN6ENSG00000000003.102988.486002322.260800.363802.973702.16010HepG2ASCC1
TSPAN6ENSG00000000003.104501.583002206.287601.0287020.7821018.90250HepG2CIRBP
TSPAN6ENSG00000000003.101622.316501989.20880-0.294104.709603.88590HepG2CKAP4
TSPAN6ENSG00000000003.102555.428901200.056501.0904011.067109.57490HepG2CNOT7
TSPAN6ENSG00000000003.10480.41100823.02820-0.776708.066406.94400HepG2CPSF6
TSPAN6ENSG00000000003.101565.080601238.706400.337302.692701.62920HepG2CSTF2
TSPAN6ENSG00000000003.101840.765703061.99830-0.7342029.5940027.66490HepG2DAZAP1
TSPAN6ENSG00000000003.102819.736601817.245100.6337011.042309.26490HepG2DDX24
TSPAN6ENSG00000000003.103716.320502688.612100.466904.475103.69380HepG2DDX3X
TSPAN6ENSG00000000003.101812.864401463.041500.309202.138101.32770HepG2EEF2
TSPAN6ENSG00000000003.102242.383601710.120300.390802.441201.40620HepG2AGO1
TSPAN6ENSG00000000003.101475.613302220.25870-0.589406.201305.33210HepG2EIF2S1
TSPAN6ENSG00000000003.103101.700102388.829100.376702.196501.58070HepG2EIF4B
TSPAN6ENSG00000000003.102262.949101640.694600.463804.765103.13480HepG2FKBP4
TSPAN6ENSG00000000003.10507.380601127.85580-1.1524021.6905019.59370HepG2FUBP3
TSPAN6ENSG00000000003.101240.841701743.95670-0.491005.430504.56770HepG2HNRNPA1
TSPAN6ENSG00000000003.101354.987501939.82130-0.517606.055005.05770HepG2HNRNPC
TSPAN6ENSG00000000003.103432.484802324.820600.562007.378806.27890HepG2HNRNPK
TSPAN6ENSG00000000003.101414.66750978.457900.531803.879002.41800HepG2HSPD1
TSPAN6ENSG00000000003.101249.438301612.97730-0.368403.838802.99690HepG2IGF2BP1
TSPAN6ENSG00000000003.101436.025202334.39150-0.701008.613207.49240HepG2IGF2BP2
TSPAN6ENSG00000000003.101292.191201968.36500-0.6072018.1053016.41680HepG2ILF2
TSPAN6ENSG00000000003.102067.140201818.757200.184602.251701.32960HepG2KIF1C
TSPAN6ENSG00000000003.102306.492203036.27130-0.396605.806904.70800HepG2NOL12
TSPAN6ENSG00000000003.101824.208902270.18010-0.315502.129301.48860HepG2PABPC4
TSPAN6ENSG00000000003.101771.965602231.15190-0.332405.140404.35400HepG2PCBP1
TSPAN6ENSG00000000003.101466.164501718.72870-0.229302.129601.47570HepG2PPIL4
TSPAN6ENSG00000000003.10913.603201116.23600-0.289002.750401.97850HepG2PRPF4
TSPAN6ENSG00000000003.102537.604403074.51870-0.276902.954602.26100HepG2PUM2
TSPAN6ENSG00000000003.102308.743202026.505900.188002.190701.62740HepG2PUS1
TSPAN6ENSG00000000003.102059.077302458.80710-0.256002.693602.07630HepG2QKI
TSPAN6ENSG00000000003.10811.687701155.65380-0.509705.477104.64420HepG2RPS19
TSPAN6ENSG00000000003.101091.449201716.08070-0.6529016.5395015.16050HepG2SAFB2
TSPAN6ENSG00000000003.10923.628701159.79310-0.328502.165601.33000HepG2SERBP1
TSPAN6ENSG00000000003.10674.70590881.31640-0.385402.658801.96760HepG2SF3B1
TSPAN6ENSG00000000003.101654.920702001.24820-0.274104.409603.63130HepG2SMN1
TSPAN6ENSG00000000003.101594.400302089.20360-0.389902.269001.41070HepG2SMNDC1
TSPAN6ENSG00000000003.103113.271002467.146000.335505.932205.30490HepG2SRSF1
TSPAN6ENSG00000000003.101344.770301609.27880-0.259102.835902.13180HepG2SRSF7
TSPAN6ENSG00000000003.102286.739702007.132200.188102.039901.55160HepG2SRSF9
TSPAN6ENSG00000000003.103033.091702705.580500.164801.873501.43010HepG2SSB
TSPAN6ENSG00000000003.10700.041401047.15330-0.581003.068801.90700HepG2STIP1
TSPAN6ENSG00000000003.102282.818903254.58130-0.5117014.9191013.66170HepG2SUCLG1
TSPAN6ENSG00000000003.103064.836602217.494800.466808.317207.42960HepG2TAF15
TSPAN6ENSG00000000003.101161.93500867.751600.421103.466202.66550HepG2TARDBP
TSPAN6ENSG00000000003.101720.833201315.375800.387503.318702.23310HepG2TFIP11
TSPAN6ENSG00000000003.101150.356101872.46790-0.7029013.4355012.47390HepG2TIAL1
TSPAN6ENSG00000000003.10878.278701328.30540-0.596805.907705.00620HepG2U2AF1
TSPAN6ENSG00000000003.10684.058901210.60140-0.823502.306901.41650HepG2U2AF2
TSPAN6ENSG00000000003.10733.577702997.20670-2.0306056.3505053.20240HepG2UBE2L3
TSPAN6ENSG00000000003.101829.596601495.968500.290303.985003.17060HepG2UPF1
TSPAN6ENSG00000000003.101181.260101645.28860-0.478004.617403.95710HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TSPAN6 is not available on ENCORE database.





3 RBPs can affect the splicing of TSPAN6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETSPAN6ENSG00000000003.10chrX-998884019988853699887481998875659988892799889026-0.085000.000030.00234excludedHepG2HNRNPU
MXETSPAN6ENSG00000000003.10chrX-9988748199887565998884019988853699885755998858639988892799889026-0.103000.003130.067852includedHepG2XRN2
MXETSPAN6ENSG00000000003.10chrX-9988575599885863998874819988756599883666998849839988840199888536-0.088000.004140.075942includedHepG2HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TSPAN6 is not avaliable on ENCORE database.