TARDBP

General Information

Gene Name       : TARDBP
Gene ID             : ENSG00000120948.17
Essential Gene : No

Functions

Localization(RBPImage: TARDBP)

Domains (AlphaFold: TARDBP)


Antibody Validation

View validation images for all TARDBP antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TARDBPENSG00000120948.17220.75216.13218.44ENCSR000AEF
HepG2TARDBPENSG00000120948.17172.34234.33203.34ENCSR985KAT
K562TARDBPENSG00000120948.17258.41327.66293.04ENCSR000AEO

Assays

6 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 340ENCSR584TCRTARDBPK562ReleasedENCAB057RGGENCSR924OLO  
eCLIPeCLIP: 4110ENCSR187VEQTARDBPHepG2ReleasedENCAB349KOVENCSR265LJL  
eCLIPeCLIP: 4014ENCSR720BJUTARDBPK562ReleasedENCAB349KOVENCSR720EEM  
knockdown followed by RNA-seq TARDBP-BGKLV11-K562ENCSR134JRETARDBPK562ReleasedENCSR129RWD   shRNAKD% = 69.3,71.7
knockdown followed by RNA-seq TARDBP-BGHLV35-HepG2ENCSR527QNCTARDBPHepG2ReleasedENCSR264TUE   shRNAKD% = 51.5,60.8
RNA Bind-n-SeqRBNS: TARDBPENCSR466JPTTARDBPcell-free sampleReleasedENCSR927JUW  






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
TARDBP340K562ENCSR584TCRENCSR924OLOENCAB057RGGA303-223A1ReleasedENCODE3
TARDBP4110HepG2ENCSR187VEQENCSR265LJLENCAB349KOV711051SI259917ReleasedENCODE4
TARDBP4014K562ENCSR720BJUENCSR720EEMENCAB349KOV711051SI259917ReleasedENCODE4


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
TARDBPENCAB349KOV711051SI259917Released, ENCODE4Released, ENCODE4BGKLV11-57, Released, ENCODE4
TARDBPENCAB057RGGA303-223A1Released, ENCODE3Released, ENCODE3BGHLV35-53, Released, ENCODE3BGKLV11-57, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
TARDBPK562shRNAENCSR134JREENCSR129RWDTARDBP-LV11-57,TARDBP-LV11-58Nontarget-LV11-1,nontarget-LV11-269.3,71.7ReleasedENCODE3
TARDBPK562shRNABGKLV40-15,BGKLV40-16BGKLV40-1,BGKLV40-265.4,56.2OthersENCODE4
TARDBPHepG2shRNABGHLV12-83,BGHLV12-84BGHLV12-1,BGHLV12-2NotSatisfiedENCODE3
TARDBPHepG2shRNABGHLV14-59,BGHLV14-60BGHLV14-1,BGHLV14-2NotSatisfiedENCODE3
TARDBPHepG2shRNAENCSR527QNCENCSR264TUETARDBP_BGHLV35-53,TARDBP_BGHLV35-54NT_BGHLV35-1,NT_BGHLV35-251.5,60.8ReleasedENCODE3
TARDBPHepG2shRNABGHLV39-15,BGHLV39-16BGHLV39-1,BGHLV39-216.0,9.0OthersENCODE4


  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
TARDBPTARDBPReleasedENCODE3


  Localization Image in HepG2  
    TARDBP: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Speckles
  • Cytoplasm
  • Cytosolic
  • Nuclear release mitosis












  • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    TARDBPProduct_ID: A303-223A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: TARDBP-human
    HepG2_Bethyl_A303-223A_1_TDP43.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using TDP43 (TARDBP) specific antibody. Lane 1 is 1% of twenty million whole cell lysate input; lane 2 is 10% of IP enrichment using rabbit normal IgG (lanes under 'lgG'); Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-TDP43 antibody (lanes under 'TDP43'). The expected molecular weight of TDP43 is 43 kDa.
    TARDBP-hepg2.png<br>Caption: Western blot following shRNA against TARDBP in HepG2 whole cell lysate using TARDBP specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against TARDBP.TARDBP protein appears as the green band, GAPDH serves as a control and appears in red.
    K562_Bethyl_A303-223A_1_TARDBP.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using TARDBP specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 10% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-TDP43 antibody (lanes under 'TARDBP').
    TARDBP_Secondary_Western.png<br>Caption: Western blot following shRNA against TARDBP in K562 whole cell lysate using TARDBP specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against TARDBP. TARDBP protein appears as the green band, GAPDH serves as a control and appears in red.
    TARDBPProduct_ID: 711051
    Lot_ID: SI259917
    Source: Thermo Fisher
    Target Name: TARDBP-human
    ThermoFisher_711051_SI259917_TARDBP_HepG2.png<br>Caption: IP-WB analysis of HepG2 whole cell lysate using the TARDBP specific antibody, 711051. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment using a normal IgG antibody, respectively. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the TARDBP-specific antibody, 711051. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
    ThermoFisher_711051_SI259917_TARDBP.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the TARDBP specific antibody, 711051. Lanes 1 and 3 are 2.5% of five million whole cell lysate input. Lanes 2 and 4 are 50% of IP enrichment from five million whole cell lysate using normal IgG antibody and the TARDBP-specific antibody, 711051. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
    TARDBP-K562.png<br>Caption: Western blot following shRNA against TARDBP in K562 whole cell lysate using TARDBP specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNA against TARDBP. TARDBP protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.








    RNA Targets

    • TARDBP protein binds to 6,712 RNA regions.  




    • The binding motifs of TARDBP

    • Trulli

    Proteins bound to RNA

    • TARDBP RNA is bound by 37 proteins.  






    TARDBP protein has 6,712 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 6,712 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    TARDBPchr31548363115483689+6.0455716.27819K562EAF13'-UTR
    TARDBPchr51043179710431861+4.521136.23114K562MARCH6intron-Distal
    TARDBPchr56851430268514384+3.043673.44195K562MRPS36intron-Distal
    TARDBPchrX4832335648323375-4.762207.26804K562SLC38A5intron-Distal
    TARDBPchr1233764621233764713+4.298184.13641K562KCNK1intron-Distal
    TARDBPchr1031535493153605+5.0930917.58171K562PFKPintron-Distal
    TARDBPchr3129213532129213636+4.299153.87294K562IFT122intron-Distal
    TARDBPchr114737948047379569-4.8826011.87937K562SPI1intron-Distal
    TARDBPchr194119471141194784-5.3672123.62362K562NUMBLintron-Distal
    TARDBPchr2209633672209633752+4.347165.18738K562PTH2Rintron-Distal
    TARDBPchr2232576648232576679+3.286388.86280K562PTMA3'-UTR,CDS
    TARDBPchr110441991044250-4.975337.89429K562C1orf159intron-Distal
    TARDBPchr1977051347705240+6.3633747.19537K562CTD-3214H19.4, STXBP2intron-Distal
    TARDBPchr6166747599166747678-3.561484.90204K562SFT2D1intron-Distal
    TARDBPchr61775995117760015-3.054684.02727K562KIF13A3'-UTR,intron-Distal
    TARDBPchr181305136113051448+3.403596.62338K562CEP192intron-Distal
    TARDBPchr165320450953204582+4.407424.39969K562CHD9intron-Distal
    TARDBPchr9123896918123896989+5.4825411.58578K562CNTRLintron-Distal
    TARDBPchr48803797088038068+4.614946.23114K562AFF1intron-Distal
    TARDBPchr149193323591933310-4.021133.22972K562SMEK1intron-Distal
    TARDBPchr7139730373139730476-3.085443.20028K562PARP12intron-Distal
    TARDBPchr162396369523963756+4.721096.02873K562PRKCBintron-Distal
    TARDBPchr152295562722955717+4.459145.44904K562CYFIP1intron-Distal
    TARDBPchr143141671231416773-4.324973.91772K562STRN3intron-Distal
    TARDBPchr194941198549412057+4.490434.92524K562NUCB1intron-Distal
    TARDBPchr34716944147169499-4.952488.39033K562SETD2intron-Distal
    TARDBPchr2220397311220397425+5.5436712.37862K562ASIC4intron-Distal
    TARDBPchr146556909865569216-4.2549515.79210K562MAX5'-UTR,intron-Distal,intron-Proximal
    TARDBPchr5118604715118604809+6.3333720.52147K562TNFAIP8intron-Distal
    TARDBPchr8106374274106374374+5.104188.89278K562ZFPM2, RP11-127H5.1intron-Distal
    TARDBPchr1212918713212918766-3.398154.65797K562NSL1intron-Distal
    TARDBPchr18923378289233842+4.283404.85626K562PKN2intron-Distal
    TARDBPchr175846561858465673-5.163838.89278K562USP32intron-Distal
    TARDBPchr193756974237569852+4.347164.66266K562ZNF420intron-Distal
    TARDBPchr5170824494170824552+5.0225618.08439K562NPM1intron-Distal
    TARDBPchr36986665569866725+3.847163.46495K562MITFintron-Distal
    TARDBPchr203762631237626415+4.497115.44904K562DHX35intron-Distal
    TARDBPchr156075087060750953-3.909933.60944K562NARG2intron-Distal
    TARDBPchr146839442768394509+3.805933.34609K562RAD51Bintron-Distal
    TARDBPchr106015751260157590+4.4270919.30358K562TFAM3'-UTR
    TARDBPchr5176492863176492951+4.7264919.56462K562ZNF3463'-UTR,intron-Distal
    TARDBPchr72345486423454950-4.561485.71021K562IGF2BP3intron-Distal
    TARDBPchr195548886855488965+3.955233.69425K562NLRP2intron-Distal
    TARDBPchr193756994937570047+3.936163.08314K562ZNF420intron-Distal
    TARDBPchr214426835944268403-5.1764940.79304K562WDR4intron-Distal
    TARDBPchr114737753747377625-4.7834010.52495K562SPI1intron-Distal
    TARDBPchr213847361638473724+5.8169414.82580K562TTC3, AP001429.1intron-Distal,polyA_site
    TARDBPchr112420651242170-5.6314012.90461K562ACAP3intron-Distal
    TARDBPchr15124851451248568-5.005947.44287K562FAF1intron-Distal
    TARDBPchr173557001635570096-4.267059.51639K562ACACAintron-Distal
    TARDBPchr12124946633124946691-3.997117.97776K562NCOR2intron-Distal
    TARDBPchr1150783891150783989-5.1132917.44933K562ARNT3'-UTR,intron-Distal
    TARDBPchr7133174726133174797+4.241413.60944K562EXOC4intron-Distal
    TARDBPchr12124946691124946746-5.127719.43874K562NCOR2intron-Distal
    TARDBPchr1227174818227174937+3.6405911.80291K562ADCK33'-UTR,intron-Distal
    TARDBPchr186023918602450-3.728643.08314K562REREintron-Distal
    TARDBPchr168142001681420085+4.6133712.68141K562RP11-391L3.1, GAN3'-UTR,intron-Distal
    TARDBPchr1979722587972332+4.132324.39969K562MAP2K7intron-Distal
    TARDBPchr204754955147549651+4.485934.13641K562ARFGEF2intron-Distal
    TARDBPchr1227174620227174676+4.316464.92524K562ADCK33'-UTR,intron-Distal
    TARDBPchr7127383770127383844+4.2639114.07359K562SND1intron-Distal
    TARDBPchr178010458780104672-6.4343019.39865K562CCDC57intron-Distal
    TARDBPchrX152961277152961285+6.50412400.00000K562SLC6A83'-UTR
    TARDBPchr177904856079048645+5.226238.39033K562BAIAP2intron-Distal
    TARDBPchr192909815529098159+4.2212624.58912K562AC079466.1intron-Distal
    TARDBPchr352110055211071+5.7802913.16698K562ARL8Bintron-Distal
    TARDBPchr5139890401139890470+4.7024111.61021K562ANKHD1, ANKHD1-EIF4EBP3intron-Distal
    TARDBPchr21092660210926676-3.359804.38938K562PDIA6intron-Distal
    TARDBPchr224036835640368402+4.182094.39969K562GRAP23'-UTR
    TARDBPchr5882502882547-4.4591415.91698K562BRD9intron-Distal
    TARDBPchr1891059289106024+4.109898.23540K562NDUFV2, RP11-21J18.1intron-Distal
    TARDBPchr8112005121112005216-5.6323211.58578K562RP11-946L20.2intron-Distal
    TARDBPchr63582142035821514-3.926443.34609K562SRPK1intron-Distal
    TARDBPchr11229708212297242+4.981418.06678K562VPS13Dintron-Distal
    TARDBPchr1617889621789010+5.5901712.11491K562MAPK8IP3intron-Distal
    TARDBPchr1079007797900881+4.560136.23114K562TAF3intron-Distal
    TARDBPchr7119369330119369390-4.433743.87294K562RP11-328J2.1intron-Distal
    TARDBPchr29755992997560065-6.3944228.44741K562FAM178Bintron-Distal
    TARDBPchrX1141909811419161-3.453664.79863K562ARHGAP6intron-Distal
    TARDBPchr1643938614393959-4.807865.44904K562CORO7-PAM16, PAM16intron-Distal,intron-Proximal
    TARDBPchr173114849731148582-3.809786.16126K562MYO1Dintron-Distal
    TARDBPchr194119533241195385-5.8896115.75178K562NUMBLintron-Distal
    TARDBPchr9134039583134039636+6.3178922.77735K562NUP214intron-Distal,intron-Proximal
    TARDBPchr195585297055853072+4.313614.39969K562SUV420H2, AC020922.1intron-Distal,intron-Proximal
    TARDBPchr31345915613459278-3.656986.70118K562NUP210intron-Distal
    TARDBPchr177966573579665826+3.554684.82429K562HGSintron-Distal
    TARDBPchr143531392535313988-3.228643.69826K562BAZ1Aintron-Distal
    TARDBPchr176184302461843072-4.261183.87294K562CCDC47intron-Distal,intron-Proximal
    TARDBPchr55369915553699233+3.6603912.67044K562LINC01033intron-Distal
    TARDBPchr109789440497894482+4.021133.60944K562ZNF518Aintron-Distal
    TARDBPchr162967935529679364+3.944709.96447K562QPRT, SPN3'-UTR,intron-Distal
    TARDBPchr9137231532137231642+4.5211312.14339K562RXRAintron-Distal
    TARDBPchr33825045438250549+4.883146.48464K562OXSR1intron-Distal
    TARDBPchr1154023685402421-4.098413.34609K562HBE1, HBG2, AC104389.28intron-Distal
    TARDBPchr19323504323664-6.6861627.07845K562MIER2intron-Distal
    TARDBPchr5882599882642-4.2837414.06020K562BRD9intron-Distal
    TARDBPchr155900787659007972-4.661185.79092K562ADAM10intron-Distal
    TARDBPchr63455662134556670-3.4716011.39859K562C6orf1063'-UTR,intron-Distal
    TARDBPchr62971472529714782-3.967673.60944K562HLA-F-AS1, MICEintron-Distal
    TARDBPchr6149866206149866286-4.119953.34609K562PPIL4intron-Distal




    37 proteins are bound to TARDBP RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr11108485111084872+3'-UTR,intron-Distal4.260487.99418K562KHSRP
    chr11108487211084994+3'-UTR,intron-Distal3.6679212.58394HepG2KHSRP
    chr11108501311085059+3'-UTR,intron-Distal3.946889.41898K562KHSRP
    chr11108388811083950+3'-UTR,intron-Distal3.138223.02046HepG2LARP4
    chr11108059911080630+3'-UTR,CDS4.219549.83058HepG2GRWD1
    chr11107889211078932+3'-UTR,CDS,intron-Proximal3.804156.62597HepG2GRWD1
    chr11108478611084851+3'-UTR,intron-Distal5.5524634.17487K562KHSRP
    chr11107702311077047+3'-UTR,CDS,intron-Distal3.273404.40995K562GRWD1
    chr11108341811083479+3'-UTR,intron-Proximal3.9281912.25195K562TIA1
    chr11108348311083492+3'-UTR,intron-Distal,intron-Proximal3.960425.12356HepG2LIN28B
    chr11107878911078815+3'-UTR,CDS,intron-Proximal3.865923.11282HepG2G3BP1
    chr11108347611083587+3'-UTR,intron-Distal,intron-Proximal4.7908879.19910K562TARDBP
    chr11108300211083064+3'-UTR,intron-Distal3.5035827.80785K562PUM2
    chr11108348511083494+3'-UTR,intron-Distal,intron-Proximal4.8194417.80193K562LIN28B
    chr11107892211078959+3'-UTR,CDS,intron-Proximal5.376915.35117HepG2PRPF8
    chr11108360311083680+3'-UTR,intron-Distal3.134878.07183K562EIF4G2
    chr11107702711077065+3'-UTR,CDS,intron-Distal,intron-Proximal3.2692511.67184K562UCHL5
    chr11108361811083639+3'-UTR,intron-Distal4.1547527.32258K562TARDBP
    chr11108349711083564+3'-UTR,intron-Distal3.458054.50601HepG2LIN28B
    chr11108555511085637+3'-UTR,intron-Proximal3.620033.39362HepG2CSTF2
    chr11108271911082760+3'-UTR,intron-Distal3.738364.80250HepG2CDC40
    chr11108468911084782+3'-UTR,intron-Distal3.4314916.39702HepG2KHSRP
    chr11108471011084785+3'-UTR,intron-Distal4.120284.36284HepG2FUS
    chr11108337811083428+3'-UTR,5'-UTR,intron-Proximal5.4722051.04660HepG2PRPF8
    chr11108349211083497+3'-UTR,intron-Distal3.796034.02011HepG2LIN28B
    chr11108348811083578+3'-UTR,intron-Distal3.705034.95426K562SRSF7
    chr11107703511077066+3'-UTR,CDS,intron-Distal,intron-Proximal3.100896.00907HepG2PPIG
    chr11107702811077067+3'-UTR,CDS,intron-Distal,intron-Proximal4.837735.41449HepG2ZNF800
    chr11108344211083467+3'-UTR,intron-Proximal4.500698.26074HepG2LIN28B
    chr11107888711078931+3'-UTR,CDS,intron-Proximal3.035553.74534K562SRSF1
    chr11108052411080599+3'-UTR,CDS3.9386613.62051HepG2GRWD1
    chr11108387311083957+3'-UTR,intron-Distal3.083263.17639HepG2LSM11
    chr11108052211080642+3'-UTR,CDS3.4412012.78270K562SRSF1
    chr11108387911083958+3'-UTR,intron-Distal3.7797611.06573K562EIF4G2
    chr11108319311083221+3'-UTR,intron-Proximal3.282283.37074K562TIA1
    chr11108363911083683+3'-UTR,intron-Distal4.4222426.94070K562TARDBP
    chr11108505911085091+3'-UTR,intron-Distal,intron-Proximal4.276309.94910K562KHSRP
    chr11108434411084394+3'-UTR,5'-UTR,intron-Proximal3.906153.98534K562HNRNPC
    chr11108388311083960+3'-UTR,intron-Distal6.0479937.70168K562TARDBP
    chr11108478211084838+3'-UTR,intron-Distal3.2153810.38879HepG2KHSRP
    chr11108346811083484+3'-UTR,intron-Proximal5.5749327.96133K562LIN28B
    chr11108342011083468+3'-UTR,intron-Proximal5.3965424.65372K562LIN28B
    chr11107696811077029+3'-UTR,CDS,intron-Distal3.045145.86176HepG2BCLAF1
    chr11108368311083726+3'-UTR,intron-Distal3.045488.22697K562TARDBP
    chr11107885711078884+3'-UTR,CDS3.175934.06531HepG2GRWD1
    chr11108297811083002+3'-UTR,intron-Distal3.731356.79091K562PUM2
    chr11108410811084193+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.4572913.24176HepG2U2AF2
    chr11108489911084929+3'-UTR,intron-Distal4.9532334.23158K562KHSRP
    chr11108052411080622+3'-UTR,CDS4.771504.95780HepG2ZNF800
    chr11108336511083397+3'-UTR,5'-UTR,intron-Proximal3.9620323.16697K562PRPF8
    chr11108349411083526+3'-UTR,intron-Distal4.0411511.34751K562LIN28B
    chr11108487211084899+3'-UTR,intron-Distal5.0001725.89717K562KHSRP
    chr11108335411083378+3'-UTR,5'-UTR5.4608939.73484HepG2PRPF8
    chr11108339811083452+3'-UTR,intron-Proximal3.658095.72637HepG2TIAL1
    chr11108471311084786+3'-UTR,intron-Distal4.2146219.42058K562KHSRP
    chr11108501711085049+3'-UTR,intron-Distal3.147013.04623HepG2KHSRP
    chr11108389211083968+3'-UTR,intron-Distal3.200617.02692K562SRSF1
    chr11108520511085288+3'-UTR,intron-Proximal3.726423.35522K562SRSF7
    chr11107878311078833+3'-UTR,CDS,intron-Proximal3.297734.07060HepG2ZNF800
    chr11107885611078930+3'-UTR,CDS4.4277316.75864K562LIN28B
    chr11108358711083613+3'-UTR,intron-Distal4.0494617.96281K562TARDBP
    chr11108341111083471+3'-UTR,intron-Proximal3.392886.83056K562RBM22
    chr11108359411083642+3'-UTR,intron-Distal3.259644.66729K562LIN28B
    chr11108339711083426+3'-UTR,intron-Proximal4.3296326.68700K562PRPF8
    chr11108349711083581+3'-UTR,intron-Distal3.6935534.09774K562EIF4G2
    chr11108492911084993+3'-UTR,intron-Distal4.7740029.56039K562KHSRP
    chr11107691711077037+3'-UTR,CDS,intron-Distal3.241316.92553HepG2G3BP1
    chr11108346711083483+3'-UTR,intron-Proximal5.300849.16903HepG2LIN28B
    chr11108385411083925+3'-UTR,intron-Distal3.135854.17847K562FUS
    chr11107887711078927+3'-UTR,CDS4.019724.74492HepG2LIN28B
    chr11108340211083418+3'-UTR,intron-Proximal4.3766610.39589K562TIA1
    chr11107881311078882+3'-UTR,CDS3.3932818.65744HepG2BCLAF1
    chr11108371611083769+3'-UTR,intron-Distal3.313733.65489K562CPSF6
    chr11107892811078986+3'-UTR,CDS,intron-Proximal3.720379.87550K562AQR
    chr11107271311072803+5'-UTR,intron-Distal,intron-Proximal4.0919218.45407HepG2DDX3X
    chr11107275711072798+5'-UTR,intron-Distal4.103995.14244K562DROSHA
    chr11107389111073952+5'-UTR,CDS3.715649.06911HepG2GRWD1
    chr11107271311072770+5'-UTR,intron-Distal3.668607.42445K562RPS3
    chr11107271111072765+5'-UTR,intron-Distal3.497944.61999K562HNRNPM
    chr11107279011072801+5'-UTR,intron-Distal,intron-Proximal5.4172856.35332K562DDX3X
    chr11107271111072801+5'-UTR,intron-Distal,intron-Proximal3.039269.91711K562NCBP2
    chr11107377211073793+5'-UTR,CDS,intron-Proximal5.0144628.18537K562DDX3X
    chr11107382911073882+5'-UTR,CDS3.673814.48818HepG2GRWD1
    chr11107271211072759+5'-UTR,intron-Distal4.7023129.25760HepG2NCBP2
    chr11107277911072791+5'-UTR,intron-Distal3.391103.95937K562UCHL5
    chr11107271211072756+5'-UTR,intron-Distal4.8525352.31497K562DDX3X
    chr11107278111072846+5'-UTR,intron-Distal,intron-Proximal3.9059110.32093HepG2PRPF8
    chr11107275611072790+5'-UTR,intron-Distal5.23502400.00000K562DDX3X
    chr11107276011072779+5'-UTR,intron-Distal4.3503130.88536HepG2NCBP2
    chr11107271811072788+5'-UTR,intron-Distal5.226676.40474K562GEMIN5
    chr11107277911072802+5'-UTR,intron-Distal,intron-Proximal4.4090128.64353HepG2NCBP2
    chr11108241711082457+CDS,intron-Distal3.6873011.60592HepG2PRPF4
    chr11108217611082264+CDS,intron-Proximal3.149306.27878K562SRSF1
    chr11108215711082224+CDS,intron-Proximal3.279456.24870K562U2AF2
    chr11108212511082202+CDS,intron-Proximal3.502756.52492K562SF3B4
    chr11108232111082379+CDS,intron-Proximal3.128998.29139HepG2PCBP2
    chr11108216611082230+CDS,intron-Proximal3.070629.30737HepG2U2AF2
    chr11108237411082517+CDS,intron-Distal,intron-Proximal3.1229323.19810K562GTF2F1
    chr11108216811082220+CDS,intron-Proximal3.615254.35148K562U2AF1
    chr11108229011082378+CDS,intron-Proximal3.6892123.00706HepG2PRPF4
    chr11108232211082373+CDS,intron-Proximal4.0528812.94762HepG2GTF2F1
    chr11108217911082225+CDS,intron-Proximal3.930568.66838HepG2BCLAF1
    chr11108231011082374+CDS,intron-Proximal3.3918324.42510K562GTF2F1
    chr11108237311082446+CDS,intron-Distal,intron-Proximal4.3314119.02125HepG2GTF2F1
    chr11108237811082417+CDS,intron-Distal,intron-Proximal3.5128213.56610HepG2PRPF4
    chr11108231611082374+CDS,intron-Proximal3.056856.88539K562TIA1
    chr11108531311085404+intron-Distal,intron-Proximal3.710687.44177K562CPSF6
    chr11108199411082051+intron-Distal3.198237.47863K562KHSRP
    chr11107404811074140+intron-Distal,intron-Proximal3.389754.07440K562PRPF8
    chr11107708311077125+intron-Distal,intron-Proximal4.813424.96013K562PRPF8
    chr11108535411085368+intron-Distal,intron-Proximal3.878363.21228K562TIA1
    chr11107709211077142+intron-Distal,intron-Proximal4.674534.03304K562RBM22
    chr11108529811085354+intron-Proximal5.1848410.05847K562TIA1
    chr11108528811085356+intron-Proximal4.119093.61881HepG2TIAL1
    chr11108509711085154+intron-Proximal3.462408.68012K562KHSRP
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    The TARDBP protein binds to its own RNA.

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    TARDBPchr11108347611083587+4.7908879.19910K562TARDBP3'-UTR,intron-Distal,intron-Proximal
    TARDBPchr11108361811083639+4.1547527.32258K562TARDBP3'-UTR,intron-Distal
    TARDBPchr11108363911083683+4.4222426.94070K562TARDBP3'-UTR,intron-Distal
    TARDBPchr11108388311083960+6.0479937.70168K562TARDBP3'-UTR,intron-Distal
    TARDBPchr11108368311083726+3.045488.22697K562TARDBP3'-UTR,intron-Distal
    TARDBPchr11108358711083613+4.0494617.96281K562TARDBP3'-UTR,intron-Distal


    Diffrential Expression

    • 11,758 differentially expressed genes after Knockdown/Knockout TARDBP protein.  





    • 125 RBPs can affect the levels of TARDBP.  







    11,758 differentially expressed genes after Knockdown/Knockout TARDBP protein :

    Only display 100 entries as example. Please click "View All" button to see all 11,758 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    TSPAN6ENSG00000000003.101161.93500867.751600.421103.466202.66550HepG2TARDBP
    DPM1ENSG00000000419.81544.622502119.96380-0.456803.458202.65830HepG2TARDBP
    SCYL3ENSG00000000457.9188.25370127.288400.564502.104301.46010HepG2TARDBP
    C1orf112ENSG00000000460.1293.94420226.86120-1.271908.239207.07670HepG2TARDBP
    NFYAENSG00000001167.10650.399701869.74530-1.5234037.6970035.60210HepG2TARDBP
    LAS1LENSG00000001497.12488.42040716.67930-0.553204.322003.44230HepG2TARDBP
    CYP51A1ENSG00000001630.117350.788004223.378100.7994015.8361014.34150HepG2TARDBP
    LAP3ENSG00000002549.81384.959401791.75770-0.371503.134402.36770HepG2TARDBP
    CD99ENSG00000002586.133152.584002570.899400.294202.376201.69680HepG2TARDBP
    MAD1L1ENSG00000002822.11392.39460572.54030-0.545103.846603.00730HepG2TARDBP
    CYP26B1ENSG00000003137.43.2980025.83810-2.969803.773602.94250HepG2TARDBP
    CFLARENSG00000003402.152160.894001711.054000.336602.856002.12120HepG2TARDBP
    TFPIENSG00000003436.1012492.094608015.870300.6400010.963609.66270HepG2TARDBP
    RBM5ENSG00000003756.122807.708702338.967400.263401.994801.36690HepG2TARDBP
    SLC7A2ENSG00000003989.122848.692302118.904400.426903.400702.60590HepG2TARDBP
    FKBP4ENSG00000004478.5976.493401517.66720-0.636207.625806.49850HepG2TARDBP
    KDM1AENSG00000004487.111979.516502714.16630-0.455404.954004.02440HepG2TARDBP
    RECQLENSG00000004700.11328.75330894.78680-1.4445024.7281022.98120HepG2TARDBP
    NDUFAB1ENSG00000004779.5654.54210834.80020-0.350902.308701.63830HepG2TARDBP
    ST7ENSG00000004866.14734.25890545.668400.428202.706801.98890HepG2TARDBP
    CDC27ENSG00000004897.73081.583204725.85710-0.616909.245608.03300HepG2TARDBP
    SKAP2ENSG00000005020.8385.06120876.08660-1.186006.096705.07960HepG2TARDBP
    DHX33ENSG00000005100.8871.420801415.95930-0.700308.711007.52570HepG2TARDBP
    THSD7AENSG00000005108.1133.2356012.026301.466402.141301.49180HepG2TARDBP
    LIG3ENSG00000005156.7693.742201061.10490-0.613106.184905.16200HepG2TARDBP
    RPAP3ENSG00000005175.5649.297101183.78860-0.8665011.8132010.47350HepG2TARDBP
    ACSM3ENSG00000005187.71382.37120509.796401.4391030.7851028.85370HepG2TARDBP
    SPPL2BENSG00000005206.12485.77860319.551600.604204.116103.25360HepG2TARDBP
    MSL3ENSG00000005302.13186.86000306.53670-0.714104.071203.21160HepG2TARDBP
    PON1ENSG00000005421.420.451303.570902.517702.736202.01480HepG2TARDBP
    CROTENSG00000005469.7336.38860218.229000.624203.013402.26030HepG2TARDBP
    ABCB4ENSG00000005471.11640.90650414.128900.629905.173504.22660HepG2TARDBP
    RHBDD2ENSG00000005486.12846.92720454.402700.8982010.885609.59060HepG2TARDBP
    MYCBP2ENSG00000005810.131264.216301583.64750-0.325002.470801.78000HepG2TARDBP
    ITGALENSG00000005844.13143.6452035.926701.9993011.262409.94980HepG2TARDBP
    ITGA3ENSG00000005884.13130.83620332.97420-1.347603.986503.13550HepG2TARDBP
    ZFXENSG00000005889.111332.43950613.772601.1182019.5943017.98640HepG2TARDBP
    LAMP2ENSG00000005893.113950.248302451.323800.6883011.203809.89390HepG2TARDBP
    ASB4ENSG00000005981.8126.68690263.53960-1.056806.755905.69040HepG2TARDBP
    GDE1ENSG00000006007.74528.997502052.190401.1419028.9645027.09370HepG2TARDBP
    TMEM132AENSG00000006118.10643.69380466.814300.463403.124302.35910HepG2TARDBP
    CX3CL1ENSG00000006210.64300.928801741.149401.3045036.1762034.13140HepG2TARDBP
    TNFRSF12AENSG00000006327.9593.58500388.646100.610904.758603.84310HepG2TARDBP
    JHDM1DENSG00000006459.6791.172501218.59740-0.623206.806205.73680HepG2TARDBP
    PHTF2ENSG00000006576.12277.39640466.87620-0.751105.742604.75390HepG2TARDBP
    GGCTENSG00000006625.13414.23960749.19690-0.854909.332108.11500HepG2TARDBP
    DBF4ENSG00000006634.3391.664201019.94230-1.3808021.4487019.79220HepG2TARDBP
    PAF1ENSG00000006712.101350.018401814.75430-0.426804.052003.19370HepG2TARDBP
    ARHGAP44ENSG00000006740.1250.0662094.65820-0.918902.585001.88040HepG2TARDBP
    ELAC2ENSG00000006744.14805.26530996.82930-0.307901.935401.31430HepG2TARDBP
    MARK4ENSG00000007047.10841.06160656.948100.356302.300801.63080HepG2TARDBP
    PROM1ENSG00000007062.7848.25640490.806700.789205.546104.57250HepG2TARDBP
    CCDC124ENSG00000007080.6301.91870471.91130-0.644404.399303.51300HepG2TARDBP
    CRAMP1LENSG00000007545.11811.37530610.237400.410902.888702.14980HepG2TARDBP
    TEAD3ENSG00000007866.141426.862901078.822100.403303.373302.58170HepG2TARDBP
    E2F2ENSG00000007968.680.75210195.19510-1.273307.390506.28150HepG2TARDBP
    PSMB1ENSG00000008018.81951.781202519.17200-0.368203.329502.54150HepG2TARDBP
    JARID2ENSG00000008083.9947.978201234.91220-0.381502.938102.19380HepG2TARDBP
    CDK11AENSG00000008128.18861.076301278.16690-0.569905.849104.85180HepG2TARDBP
    CYTH3ENSG00000008256.11190.00560330.56480-0.798902.432301.74650HepG2TARDBP
    ADAM22ENSG00000008277.10478.64710338.740300.498703.016102.26250HepG2TARDBP
    CELSR3ENSG00000008300.10842.60770672.970200.324201.934501.31360HepG2TARDBP
    AASSENSG00000008311.10319.11460658.82950-1.0458012.3005010.93750HepG2TARDBP
    PLEKHG6ENSG00000008323.11250.21040123.508901.018403.804602.96960HepG2TARDBP
    MGST1ENSG00000008394.81826.953302235.80300-0.291402.285101.61670HepG2TARDBP
    NFIXENSG00000008441.12852.183101050.94100-0.302401.952501.32990HepG2TARDBP
    ST3GAL1ENSG00000008513.101135.16090895.952200.341302.372301.69340HepG2TARDBP
    IL32ENSG00000008517.124988.748702389.197601.062108.171007.01220HepG2TARDBP
    PKD1ENSG00000008710.13828.45450518.351600.676402.550501.85040HepG2TARDBP
    MAPK8IP2ENSG00000008735.10180.6718088.546301.028805.052904.11680HepG2TARDBP
    CSDE1ENSG00000009307.119013.1219010967.66010-0.283202.563701.86170HepG2TARDBP
    UBE3CENSG00000009335.131503.334001081.511400.475004.653003.74640HepG2TARDBP
    MASP2ENSG00000009724.12360.30420219.059800.717802.244601.58200HepG2TARDBP
    IYDENSG00000009765.109.035900.421004.423701.976201.35090HepG2TARDBP
    VTA1ENSG00000009844.111388.704901778.20130-0.356702.933002.18920HepG2TARDBP
    MLXIPLENSG00000009950.1111084.921804117.321501.4287023.8438022.11420HepG2TARDBP
    BAZ1BENSG00000009954.62789.109404879.33540-0.8069015.4048013.92440HepG2TARDBP
    METTL13ENSG00000010165.15243.82020380.93110-0.643704.007203.15470HepG2TARDBP
    ZNF207ENSG00000010244.123527.410604336.35400-0.297902.580201.87610HepG2TARDBP
    NCAPD2ENSG00000010292.81072.902202769.70330-1.3682011.8634010.52080HepG2TARDBP
    IFFO1ENSG00000010295.15554.91350342.564900.695803.319502.53330HepG2TARDBP
    SEMA3GENSG00000010319.2508.47080341.087800.575901.981001.35500HepG2TARDBP
    NISCHENSG00000010322.111408.634601060.364400.409603.505302.70020HepG2TARDBP
    SCMH1ENSG00000010803.121472.932201200.372800.295102.025801.39350HepG2TARDBP
    FYNENSG00000010810.13538.82020914.15780-0.762608.446407.27410HepG2TARDBP
    LYPLA2ENSG00000011009.61011.93820702.561500.526304.452203.55970HepG2TARDBP
    CLCN6ENSG00000011021.172391.916101275.026500.9075016.3636014.85430HepG2TARDBP
    TSPAN9ENSG00000011105.7580.81850346.885700.743506.429105.38550HepG2TARDBP
    AKAP8LENSG00000011243.131596.533901225.094500.382003.154302.38520HepG2TARDBP
    UTP18ENSG00000011260.9356.72610523.08010-0.552202.240501.57830HepG2TARDBP
    PTBP1ENSG00000011304.123616.928305265.90550-0.541907.600106.47530HepG2TARDBP
    DPF1ENSG00000011332.1540.5800084.28570-1.054502.816102.08640HepG2TARDBP
    SYT7ENSG00000011347.5290.26580153.151000.922304.278603.40280HepG2TARDBP
    LARS2ENSG00000011376.5595.93980854.02460-0.519104.301003.42330HepG2TARDBP
    ANLNENSG00000011426.6706.338403265.27750-2.2088085.3880082.45030HepG2TARDBP
    WIZENSG00000011451.131022.81120811.275600.334202.217801.55900HepG2TARDBP
    PPP5CENSG00000011485.10731.474501036.82870-0.503304.396103.51040HepG2TARDBP
    BRCA1ENSG00000012048.15335.051401546.59660-2.2066064.7325062.10380HepG2TARDBP
    EXTL3ENSG00000012232.4898.08910630.232400.510904.268903.39440HepG2TARDBP
    NR1H4ENSG00000012504.9978.09980755.353900.372702.600101.89410HepG2TARDBP
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    125 RBPs can affect the gene expression of TARDBP :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    TARDBPENSG00000120948.113691.876104481.07270-0.279505.383104.58990HepG2ACO1
    TARDBPENSG00000120948.113637.327304502.21040-0.307805.401504.36250HepG2AKAP8L
    TARDBPENSG00000120948.113195.401104013.56820-0.328902.558701.80180HepG2ASCC1
    TARDBPENSG00000120948.114959.469706298.25670-0.344807.254006.22870HepG2AUH
    TARDBPENSG00000120948.112424.208703985.73290-0.717307.779106.16300HepG2BCCIP
    TARDBPENSG00000120948.112316.724603463.51190-0.580105.602104.36940HepG2BCLAF1
    TARDBPENSG00000120948.112770.774604405.65250-0.6691011.1409010.04600HepG2BOP1
    TARDBPENSG00000120948.113893.162105083.50890-0.384905.822004.75670HepG2CALR
    TARDBPENSG00000120948.113470.768104480.20030-0.368309.965908.86150HepG2CKAP4
    TARDBPENSG00000120948.112904.949304044.64840-0.477505.456304.52070HepG2CPSF6
    TARDBPENSG00000120948.113555.179804448.71880-0.323503.420302.19360HepG2CPSF7
    TARDBPENSG00000120948.114512.230106036.80540-0.419909.112508.07130HepG2CELF1
    TARDBPENSG00000120948.115058.843006491.10180-0.3597010.838309.52210HepG2DAZAP1
    TARDBPENSG00000120948.113702.260604144.39690-0.162802.196001.44680HepG2DDX19B
    TARDBPENSG00000120948.112579.306203715.95180-0.526707.436806.38010HepG2DDX21
    TARDBPENSG00000120948.113076.735904646.59880-0.594806.972706.02110HepG2DDX3X
    TARDBPENSG00000120948.112363.094003918.68780-0.729708.202906.95170HepG2DDX55
    TARDBPENSG00000120948.113134.184904592.98900-0.551303.015101.99570HepG2DDX59
    TARDBPENSG00000120948.113667.068404574.65340-0.319002.799401.78180HepG2DDX5
    TARDBPENSG00000120948.113245.792203991.67490-0.298401.961201.43320HepG2DDX6
    TARDBPENSG00000120948.113052.624104287.19850-0.4900012.6140011.38340HepG2DKC1
    TARDBPENSG00000120948.112805.724504113.66470-0.5521013.0033011.56990HepG2DNAJC21
    TARDBPENSG00000120948.112872.521504077.30640-0.5053017.1622015.67180HepG2DNAJC2
    TARDBPENSG00000120948.112349.690403421.23660-0.542004.478803.05820HepG2AGO1
    TARDBPENSG00000120948.113087.609603837.14460-0.313502.337001.78930HepG2EIF2S1
    TARDBPENSG00000120948.115604.290806403.82400-0.192402.195501.43520HepG2EIF4G1
    TARDBPENSG00000120948.114461.756606134.46190-0.459305.490204.36410HepG2EIF4G2
    TARDBPENSG00000120948.115376.527807231.37490-0.4276010.740609.68140HepG2ETF1
    TARDBPENSG00000120948.112090.017502596.79780-0.313203.419002.10330HepG2FAM120A
    TARDBPENSG00000120948.114244.150005454.63630-0.362002.723501.96050HepG2FIP1L1
    TARDBPENSG00000120948.113413.206102678.770400.349503.654402.75950HepG2FUBP3
    TARDBPENSG00000120948.112116.412102587.03230-0.289702.300001.49060HepG2GEMIN5
    TARDBPENSG00000120948.112924.379903988.42410-0.447703.834002.63220HepG2GNB2L1
    TARDBPENSG00000120948.112616.214704584.97710-0.8094011.5876010.35330HepG2GPKOW
    TARDBPENSG00000120948.113450.061304278.20320-0.310405.499404.17110HepG2HDGF
    TARDBPENSG00000120948.113230.865804153.07440-0.362304.156403.38720HepG2HNRNPA1
    TARDBPENSG00000120948.114748.624205965.48250-0.329106.362305.04490HepG2HNRNPA2B1
    TARDBPENSG00000120948.113407.553204619.51640-0.439005.562304.60650HepG2HNRNPC
    TARDBPENSG00000120948.113515.780104258.52700-0.276504.570703.67580HepG2HNRNPF
    TARDBPENSG00000120948.115349.452904019.179900.412404.546703.67060HepG2HNRNPK
    TARDBPENSG00000120948.114848.326605912.91320-0.286407.240206.19650HepG2HNRNPL
    TARDBPENSG00000120948.112564.521104375.52330-0.7708012.4212011.21250HepG2HNRNPLL
    TARDBPENSG00000120948.112829.710704588.97570-0.6975026.1343024.42560HepG2HNRNPU
    TARDBPENSG00000120948.113289.400804193.42140-0.350304.639403.72320HepG2IGF2BP1
    TARDBPENSG00000120948.113002.454104034.30000-0.426204.047103.24490HepG2IGF2BP2
    TARDBPENSG00000120948.113116.539304687.48870-0.5889026.1594024.18960HepG2ILF2
    TARDBPENSG00000120948.112728.975103838.47260-0.492203.225901.78190HepG2ILF3
    TARDBPENSG00000120948.112700.838303751.41690-0.474003.648502.24640HepG2KHDRBS1
    TARDBPENSG00000120948.113418.836704096.32540-0.260805.330503.92700HepG2KIF1C
    TARDBPENSG00000120948.114960.621706254.41670-0.334402.075601.36410HepG2LARP4
    TARDBPENSG00000120948.112513.107204103.10590-0.707207.822405.86420HepG2LIN28B
    TARDBPENSG00000120948.112120.404703040.94740-0.520203.405802.24170HepG2METAP2
    TARDBPENSG00000120948.113272.777004462.34920-0.447302.698501.74310HepG2MTPAP
    TARDBPENSG00000120948.114863.523906436.56030-0.404306.970805.76800HepG2NOL12
    TARDBPENSG00000120948.112476.951503597.79300-0.538502.540501.49710HepG2NONO
    TARDBPENSG00000120948.112622.480503598.67610-0.456502.239501.45550HepG2PABPC1
    TARDBPENSG00000120948.113187.705103923.16160-0.299502.113801.47430HepG2PABPC4
    TARDBPENSG00000120948.113294.349004542.31410-0.4634011.381509.85490HepG2PARN
    TARDBPENSG00000120948.113374.364703979.03160-0.237803.372802.71730HepG2PCBP1
    TARDBPENSG00000120948.111847.057002402.82020-0.379504.804403.20010HepG2PKM
    TARDBPENSG00000120948.112704.232904093.00160-0.5979014.5309012.91650HepG2PPIL4
    TARDBPENSG00000120948.112334.812903023.58090-0.373002.715401.91350HepG2PRPF8
    TARDBPENSG00000120948.113391.373604048.94260-0.255703.526202.92470HepG2PTBP1
    TARDBPENSG00000120948.114106.707806144.24500-0.5813010.144309.10090HepG2PUF60
    TARDBPENSG00000120948.115115.381706522.36950-0.3506011.2091010.18370HepG2PUM1
    TARDBPENSG00000120948.115011.623306517.61630-0.379105.863304.90010HepG2PUM2
    TARDBPENSG00000120948.113097.651204564.27810-0.5592019.0893017.73240HepG2PUS1
    TARDBPENSG00000120948.114390.670205398.82620-0.298203.638502.66940HepG2RBM15
    TARDBPENSG00000120948.114294.133806044.06350-0.4932011.6026010.69520HepG2RBM22
    TARDBPENSG00000120948.113498.201904710.66610-0.429303.795702.62280HepG2RBM27
    TARDBPENSG00000120948.114795.712704196.899900.192302.696502.08700HepG2RECQL
    TARDBPENSG00000120948.113480.010304587.65710-0.398704.823303.95460HepG2RPLP0
    TARDBPENSG00000120948.112683.803803868.72100-0.527603.453402.39810HepG2RPS10
    TARDBPENSG00000120948.111895.928502827.22310-0.576509.030707.99600HepG2RPS19
    TARDBPENSG00000120948.113285.412504344.73090-0.403203.493102.59470HepG2RPS2
    TARDBPENSG00000120948.112746.084103953.39220-0.525703.984503.02390HepG2RPS3A
    TARDBPENSG00000120948.113522.728604434.75980-0.332202.463401.45130HepG2RPS5
    TARDBPENSG00000120948.112207.941302991.00920-0.437903.248902.40650HepG2RRP9
    TARDBPENSG00000120948.112996.554904086.69230-0.4476012.7236011.49250HepG2SAFB2
    TARDBPENSG00000120948.112020.767202837.58020-0.489805.084703.82120HepG2SERBP1
    TARDBPENSG00000120948.113337.700804330.93430-0.375803.812702.99560HepG2SF3B1
    TARDBPENSG00000120948.115015.881705891.33640-0.232104.763603.88180HepG2SLBP
    TARDBPENSG00000120948.113547.782304765.78480-0.4258014.7333013.43390HepG2SMN1
    TARDBPENSG00000120948.113163.195804818.91290-0.607304.403503.40770HepG2SNRNP70
    TARDBPENSG00000120948.116116.691506826.49810-0.158402.332601.85970HepG2SRFBP1
    TARDBPENSG00000120948.113602.036604660.01330-0.371502.548601.59150HepG2SRSF3
    TARDBPENSG00000120948.113989.845906066.52550-0.6045020.7958019.29650HepG2SRSF5
    TARDBPENSG00000120948.113282.924404183.90370-0.349907.015105.98780HepG2SRSF7
    TARDBPENSG00000120948.114946.368505926.93070-0.260904.797304.15820HepG2SSB
    TARDBPENSG00000120948.115188.486806899.32910-0.4111013.3563012.15940HepG2SUCLG1
    TARDBPENSG00000120948.113171.025104527.36530-0.513703.610202.07960HepG2SUGP2
    TARDBPENSG00000120948.112833.703403683.33860-0.378304.519103.33210HepG2SUPT6H
    TARDBPENSG00000120948.112323.904803901.17600-0.747408.952907.84920HepG2SUPV3L1
    TARDBPENSG00000120948.111882.437604264.64000-1.1798030.0517028.14200HepG2TARDBP
    TARDBPENSG00000120948.111716.134602614.93280-0.607606.021404.64300HepG2TFIP11
    TARDBPENSG00000120948.112488.730004459.08880-0.8413023.4734022.28370HepG2TIAL1
    TARDBPENSG00000120948.112543.891104498.90530-0.8225034.3059032.59610HepG2TRIM56
    TARDBPENSG00000120948.114511.368706002.63800-0.412005.940404.59460HepG2TUFM
    TARDBPENSG00000120948.113828.639306353.67860-0.7308010.165908.52460HepG2UBE2L3
    TARDBPENSG00000120948.113679.644204374.20970-0.249504.238303.40360HepG2UPF1
    TARDBPENSG00000120948.113772.591804223.12570-0.162802.128001.58840HepG2UTP3
    TARDBPENSG00000120948.112281.051803541.04270-0.634505.275903.75640HepG2XPO5
    TARDBPENSG00000120948.113262.650804810.79160-0.5602023.7619022.55320HepG2ZNF622
    TARDBPENSG00000120948.115362.360607451.44810-0.4747011.654408.89190K562BCCIP
    TARDBPENSG00000120948.115870.371907200.85000-0.294706.221904.75820K562BCLAF1
    TARDBPENSG00000120948.116643.482708049.23160-0.276902.318501.52690K562BOP1
    TARDBPENSG00000120948.116635.945508558.32090-0.367005.121604.06030K562CPSF6
    TARDBPENSG00000120948.114457.455905462.91790-0.293504.294402.93940K562CSTF2
    TARDBPENSG00000120948.117337.548508935.58840-0.284304.563603.66800K562EIF2S2
    TARDBPENSG00000120948.116321.134205326.351300.246903.082902.24430K562EIF3G
    TARDBPENSG00000120948.114165.657705111.50980-0.295202.768001.94640K562EIF4A3
    TARDBPENSG00000120948.113822.019604603.15050-0.268303.277901.99760K562EIF4B
    TARDBPENSG00000120948.117859.046209825.02070-0.322103.283202.35510K562FIP1L1
    TARDBPENSG00000120948.116458.430008708.51130-0.431205.110003.94240K562FMR1
    TARDBPENSG00000120948.115482.325807381.51920-0.429104.308303.14440K562FTO
    TARDBPENSG00000120948.116595.360305315.747700.311105.354704.55100K562FXR1
    TARDBPENSG00000120948.115971.766308170.83300-0.452306.343305.14310K562GPKOW
    TARDBPENSG00000120948.119091.9435011908.05260-0.389305.342004.28660K562GRSF1
    TARDBPENSG00000120948.114929.287106514.96290-0.402403.499702.83890K562HNRNPC
    TARDBPENSG00000120948.117997.291706361.896700.330002.780001.54160K562HNRNPK
    TARDBPENSG00000120948.1110231.8804013320.86420-0.380604.371203.37810K562HSPD1
    TARDBPENSG00000120948.114503.297506605.66330-0.552706.801804.31360K562LIN28B
    TARDBPENSG00000120948.116139.239607975.75340-0.377604.770203.60190K562METAP2
    TARDBPENSG00000120948.114849.670307734.35960-0.673403.417502.28390K562PABPN1
    TARDBPENSG00000120948.114584.541305768.82930-0.331504.110903.13110K562POLR2G
    TARDBPENSG00000120948.118878.8465011153.11360-0.329003.225402.32760K562PPIG
    TARDBPENSG00000120948.115220.016106503.58580-0.317203.741002.97980K562PTBP1
    TARDBPENSG00000120948.1114082.1445016946.66930-0.267103.873802.73540K562PUM2
    TARDBPENSG00000120948.114414.048505327.97820-0.271502.180501.30480K562RCC2
    TARDBPENSG00000120948.116584.661208676.78460-0.398108.616107.23610K562SF3A3
    TARDBPENSG00000120948.113837.583904949.31630-0.367003.784002.52410K562SRSF4
    TARDBPENSG00000120948.114967.160006020.85640-0.277502.373101.41210K562SRSF5
    TARDBPENSG00000120948.116843.992105786.170000.242102.659801.85740K562SYNCRIP
    TARDBPENSG00000120948.112119.898006452.77200-1.6059051.9231048.14360K562TARDBP
    TARDBPENSG00000120948.115163.914706224.34530-0.269502.865202.02990K562TIA1
    TARDBPENSG00000120948.118589.8923010004.94450-0.220003.657002.18590K562TROVE2
    TARDBPENSG00000120948.114712.986206046.04130-0.359302.775701.75500K562UCHL5
    TARDBPENSG00000120948.119754.324908296.323500.233504.768903.68450K562WDR43
    TARDBPENSG00000120948.114472.207006155.54100-0.460904.487602.81180K562XRN2
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    1,996 alternative splicing events after Knockdown/Knockout TARDBP protein :

    Only display 100 entries as example. Please click "View All" button to see all 1,996 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEAPLP2ENSG00000084234.12chr11+1299935061299936741299921991299924081299965941299967250.195000.000000.00001includedK562TARDBP
    SETPD52L1ENSG00000111907.16chr6+1255748621255749011255694271255695291255782431255783040.190000.001890.06120includedK562TARDBP
    SEADPGKENSG00000159322.13chr15-7304859173048788730478967304799573052747730528680.240000.000110.00665includedK562TARDBP
    SEZNF121ENSG00000197961.7chr19-9678323967838196764039677785967877096788510.113000.000000.00006includedK562TARDBP
    SERP11-566K11.7ENSG00000267048.1chr16+8997661989976759899735478997373089976998899770710.058000.002790.08135includedK562TARDBP
    SEFAM114A2ENSG00000055147.13chr5-1534169271534170151534143031534145271534178521534179940.591000.000060.00417includedK562TARDBP
    SEKDM4BENSG00000127663.10chr19+5071020507107050474865047680507737750774810.190000.002400.07330includedK562TARDBP
    SEIMMP1LENSG00000148950.5chr11-3149527031495333314550063145511731531065315311690.272000.000040.00292includedK562TARDBP
    SEIGF2BP2ENSG00000073792.11chr3-1854109641854110161854104861854105501854143991854144510.168000.000000.00002includedK562TARDBP
    SECLDND1ENSG00000080822.12chr3-9824049698240547982399769824028698241692982417460.060000.000280.01409includedK562TARDBP
    SECGGBP1ENSG00000163320.6chr3-8810634088106442881045638810514988107168881073730.146000.000040.00267includedK562TARDBP
    SESCARB1ENSG00000073060.11chr12-1253469251253470431253020951253022531253481401253484420.155000.000000.00000includedK562TARDBP
    SEAC079466.1ENSG00000266976.1chr19+2910188829103061290975942909801129103345291061360.079000.001690.05623includedK562TARDBP
    SECCDC41ENSG00000173588.10chr12-9480439694804455947969459479703894805472948056230.331000.000000.00002includedK562TARDBP
    SENEDD1ENSG00000139350.7chr12+9731861097318715973137629731390397328753973287580.172000.001100.04048includedK562TARDBP
    SEIMMP2LENSG00000184903.5chr7-1110573141110573981106035551106036211111272931111273970.185000.000030.00205includedK562TARDBP
    SEUBE2D2ENSG00000131508.11chr5+1389418281389419921389407501389414001389799561389800200.092000.000270.01368includedK562TARDBP
    SEPRKAB1ENSG00000111725.6chr12+1201092991201094731201059541201062081201101051201102320.106000.000020.00179includedK562TARDBP
    SEZNF680ENSG00000173041.7chr7-6400468364004810640040846400418064023302640234190.366000.000050.00337includedK562TARDBP
    SELRPPRCENSG00000138095.14chr2-4411736144117501441168724411701544121683441217680.056000.000000.00001includedK562TARDBP
    SEADD1ENSG00000087274.12chr4+2928365292840229277402927839292989729310540.054000.003720.09997includedK562TARDBP
    SEGOLGA8AENSG00000175265.13chr15-3472081534720905346997763469993634727583347276720.079000.001070.03965includedK562TARDBP
    SEGOLGA8AENSG00000175265.13chr15-3484446834844548348433383484347734845095348452920.059000.003300.09209includedK562TARDBP
    SENUPL1ENSG00000139496.11chr13+2587723925877293258757622587601825881943258820870.090000.000090.00544includedK562TARDBP
    SEPHF20ENSG00000025293.11chr20+3438801534388095343599473436000134389412343895270.108000.000270.01342includedK562TARDBP
    SERAP1GAPENSG00000076864.15chr1-2192521521925313219248922192499521925986219261100.225000.000000.00001includedK562TARDBP
    SEATAD5ENSG00000176208.4chr17+2920644029206505292050202920511429214209292143900.191000.000020.00169includedK562TARDBP
    SECNOT10ENSG00000182973.14chr3+3272726532727420327268553272697432745359327454540.057000.001380.04823includedK562TARDBP
    SETRPM7ENSG00000092439.9chr15-5088038750880447508785885087868550881788508818530.070000.002020.06393includedK562TARDBP
    SEPWWP2AENSG00000170234.8chr5-1595355511595356211595207641595210721595458111595458400.282000.001690.05623includedK562TARDBP
    SEZFAS1ENSG00000177410.8chr20+4789743947897501478970214789710747905581479057970.191000.000000.00000includedK562TARDBP
    SESTX2ENSG00000111450.9chr12-1312805391312806651312753781312765221312830691312831800.210000.000130.00748includedK562TARDBP
    SEPKP4ENSG00000144283.17chr2+1594453991594454681594337821594338951594595811594596160.142000.000000.00000includedK562TARDBP
    SESGMS1ENSG00000198964.9chr10-5210014652100224520869905208708252103251521040060.060000.000640.02655includedK562TARDBP
    SEMDC1ENSG00000137337.10chr6-3068465830684860306828783068295530685021306854580.131000.000010.00062includedK562TARDBP
    SERANENSG00000132341.7chr12+1313571281313571621313566201313566711313573801313574410.160000.001820.05958includedK562TARDBP
    SERP11-462G2.1ENSG00000237643.1chr6+7110493271104969711045897110474671108917711091200.085000.000000.00022includedK562TARDBP
    SECKLFENSG00000217555.8chr16+6659209266592251665864846658669666597024665971200.211000.000010.00094includedK562TARDBP
    SECEP57ENSG00000166037.6chr11+9552867995528723955236769552390795532395955325520.194000.000000.00001includedK562TARDBP
    SEPFDN5ENSG00000123349.9chr12+5368962253689725536893255368942353691633536917080.073000.000010.00095includedK562TARDBP
    SEGPBP1ENSG00000062194.11chr5+5653293956532999565317925653185956542126565423110.119000.002670.07925includedK562TARDBP
    SEGPBP1ENSG00000062194.11chr5+5651720256517223565099475651002056526672565267960.096000.001960.06281includedK562TARDBP
    SEHMMRENSG00000072571.15chr5+1628947061628947541628917281628918081628966461628968350.235000.000380.01782includedK562TARDBP
    SEXPO6ENSG00000169180.7chr16-2822030728220443281922612819235228222686282228710.065000.000160.00900includedK562TARDBP
    SEMYSM1ENSG00000162601.5chr1-5912912159129194591270775912718359131170591313030.115000.000270.01357includedK562TARDBP
    SEBREENSG00000158019.16chr2+2811524928115315281136582811370928117399281175510.214000.000100.00610includedK562TARDBP
    SEMBD1ENSG00000141644.13chr18-4779783847797910477938864779403347799046477991080.326000.000030.00212includedK562TARDBP
    SEVILLENSG00000136059.10chr3+3804599038046119380423973804589038047282380474650.942000.000000.00000includedK562TARDBP
    SEUBAP2LENSG00000143569.14chr1+1542355781542356601542340671542341731542389761542390440.262000.000000.00002includedK562TARDBP
    SEPSMD6ENSG00000163636.6chr3-6400831864008477640079936400819964008950640091480.202000.000010.00095includedK562TARDBP
    SEEIF4HENSG00000106682.10chr7+7360457673604636736041517360424873609070736092080.160000.000000.00000includedK562TARDBP
    SERP11-98O2.1ENSG00000250501.2chr4+1397212171397212611397162121397163681397220711397224830.206000.001150.04204includedK562TARDBP
    SESREK1ENSG00000153914.11chr5+6545463665454760654492906544942465455046654551620.185000.002430.07367includedK562TARDBP
    SEPDCD10ENSG00000114209.10chr3-1674520011674521331674378491674380611674525931674526800.116000.000020.00170includedK562TARDBP
    SEEXO1ENSG00000174371.12chr1+2420298862420300332420247072420248042420301312420303570.060000.003590.09763includedK562TARDBP
    SEEXO1ENSG00000174371.12chr1+2420124102420125182420122522420123292420137102420138880.174000.001720.05707includedK562TARDBP
    SEBRD2ENSG00000204256.8chr6+3294279732942889329422383294254232943160329432980.106000.000130.00786includedK562TARDBP
    SERP11-43F13.1ENSG00000188002.6chr5-1630523163068116291151629745163275816328660.129000.002300.07057includedK562TARDBP
    SECOPS3ENSG00000141030.8chr17-1716491317165006171636871716378817165279171654420.051000.000000.00000includedK562TARDBP
    SEPRPF38AENSG00000134748.12chr1+5287093152870985528702355287055152871351528713850.077000.000000.00000includedK562TARDBP
    SESEC31AENSG00000138674.12chr4-8378278383782861837788418377891783784470837845450.110000.000080.00502includedK562TARDBP
    SEFAM136AENSG00000035141.3chr2-7052865370528735705279717052811270529056705291880.159000.000020.00146includedK562TARDBP
    SEYIPF1ENSG00000058799.9chr1-5434861554348704543443145434439554348785543489490.138000.000230.01201includedK562TARDBP
    SEBAG6ENSG00000204463.8chr6-3160727631607423316068043160700331607975316080830.130000.000220.01163includedK562TARDBP
    SEDCAF6ENSG00000143164.11chr1+1679922251679922851679737701679740311680076081680077260.168000.003720.09997includedK562TARDBP
    SEAP000320.7ENSG00000272657.1chr21+3547513335475207354458913544604535497640354977800.095000.000010.00077includedK562TARDBP
    SEACIN1ENSG00000100813.10chr14-2354033323540395235386842353882623540642235407740.283000.001920.06185includedK562TARDBP
    SEKCNN1ENSG00000105642.11chr19+1810386218103871181005241810065218104298181043680.146000.002100.06593includedK562TARDBP
    SECLCN3ENSG00000109572.9chr4+1706389421706390181706342291706344461706410571706416960.124000.000350.01674includedK562TARDBP
    SESEC24CENSG00000176986.10chr10+7550638775506474755041197550419575506562755067620.099000.000000.00010includedK562TARDBP
    SEUBE2BENSG00000119048.3chr5+1337240151337241041337100731337101541337259151337276830.073000.000230.01202includedK562TARDBP
    SEOGTENSG00000147162.9chrX+7077503970775235707743627077444270775803707759440.097000.000000.00011includedK562TARDBP
    SEOGTENSG00000147162.9chrX+7076441670764485707576787075792270767756707678730.133000.000040.00282includedK562TARDBP
    SEHNRNPA2B1ENSG00000122566.16chr7-2623745026237486262372412623735226240191262403660.096000.000000.00008includedK562TARDBP
    SEPRMT1ENSG00000126457.16chr19+5018312850183196501805285018057350183743501838450.081000.002770.08114includedK562TARDBP
    SEAC013394.2ENSG00000272888.1chr15+9343141493431544934293989342948493435233934353020.055000.000000.00048includedK562TARDBP
    SEAC013394.2ENSG00000272888.1chr15+9342681493427008934262449342641693428744934288140.227000.000040.00302includedK562TARDBP
    SEUSP3ENSG00000140455.12chr15+6388073163880775638805036388062263880900638810140.126000.000010.00079includedK562TARDBP
    SEAC073236.3ENSG00000234722.3chr7-1531086701531088091531025771531026831531091751531093190.266000.000660.02704includedK562TARDBP
    SEEEDENSG00000074266.13chr11+8598112485981199859789368597960385988021859881800.114000.000000.00005includedK562TARDBP
    SEUHRF2ENSG00000147854.12chr9+6465743646584664605726460791647539064755000.251000.000290.01426includedK562TARDBP
    SECDC45ENSG00000093009.5chr22+1948199619482125194818491948190519483503194835520.100000.002430.07367includedK562TARDBP
    SENRD1ENSG00000078618.15chr1-5230204052302110523018025230188452305897523061260.069000.000000.00003includedK562TARDBP
    SEUBE2Q2ENSG00000140367.7chr15+7615221876152323761467267614682876161291761613510.151000.003110.08810includedK562TARDBP
    SEHERC1ENSG00000103657.9chr15-6392172863921896639208756392101463922664639228340.076000.001380.04823includedK562TARDBP
    SEKRIT1ENSG00000001631.10chr7-9187006291870172918669999186707391870306918704660.061000.001530.05205includedK562TARDBP
    SESTAG2ENSG00000101972.14chrX+1232247031232248141232244241232246141232278671232279940.106000.000020.00142includedK562TARDBP
    SESTX16ENSG00000124222.17chr20+5723467857234690572269215722714357242545572426530.182000.000020.00135includedK562TARDBP
    SEMORF4L2ENSG00000123562.12chrX-1029396081029396571029334261029335791029400981029401880.230000.000000.00000includedK562TARDBP
    SESNHG8ENSG00000269893.2chr4+1192000981192002921191999121191999471192005431192005860.092000.000410.01871includedK562TARDBP
    SEBAIAP2ENSG00000175866.11chr17+7901066279010761790089507900910879027467790275430.073000.002370.07265includedK562TARDBP
    SESUN1ENSG00000164828.13chr7+8891568892408880548882528895598896700.146000.000550.02362includedK562TARDBP
    SECTD-2583A14.10ENSG00000268750.2chr19+5833186158331917583310865833131358350390583505170.494000.001230.04404includedK562TARDBP
    SEMED23ENSG00000112282.13chr6-1319206061319206501319196951319199011319211771319213020.101000.000920.03519includedK562TARDBP
    SEFNBP4ENSG00000109920.8chr11-4774728847747388477460234774633047752925477531130.135000.000070.00470includedK562TARDBP
    SEARPP19ENSG00000128989.6chr15-5285638652856443528492965284941952861044528610990.069000.000030.00226includedK562TARDBP
    SEMSL1ENSG00000188895.7chr17+3828747238287598382854973828588038287789382878370.072000.002500.07521includedK562TARDBP
    SECOPS8ENSG00000198612.6chr2+2379953742379954392379945242379946852379957692379958400.093000.000510.02229includedK562TARDBP
    SEHMGN1ENSG00000205581.6chr21-4071775540717884407170644071720040719304407194090.164000.002620.07818includedK562TARDBP
    SEPOLKENSG00000122008.11chr5+7487638074876422748726047487275874877033748772730.183000.000510.02234includedK562TARDBP





    2 RBPs can affect the splicing of TARDBP :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SETARDBPENSG00000120948.11chr1+1107617911076311110737721107402211076900110770640.086000.000000.00000includedHepG2HNRNPC
    SETARDBPENSG00000120948.11chr1+1107617911076311110737721107402211076900110770640.159000.000000.00000includedK562HNRNPC
    A3SSTARDBPENSG00000120948.11chr1+1107876411078930110787891107893011076900110770640.065000.000000.00000longerK562AQR
    MXETARDBPENSG00000120948.11chr1+1107558011075703110761791107631111073772110740221107690011077064-0.425000.000110.003552includedK562HNRNPC

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein TARDBP and its RNA.