CLDND1

General Information

Gene Name       : CLDND1
Gene ID             : ENSG00000080822.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CLDND1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLDND1ENSG00000080822.16146.59117.78132.19ENCSR000AEF
HepG2CLDND1ENSG00000080822.1631.5948.0839.84ENCSR985KAT
K562CLDND1ENSG00000080822.1649.5450.4449.99ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLDND1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLDND1 RNA is bound by 12 proteins.  







eCLIP assay for CLDND1 is not avaliable on ENCORE database.





12 proteins are bound to CLDND1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr39823435098234440-3'-UTR,intron-Distal3.098164.77070HepG2ZC3H11A
chr39824024798240320-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.483055.58362HepG2U2AF2
chr39823594698236053-3'-UTR,CDS,intron-Distal,intron-Proximal4.5716012.90217HepG2U2AF2
chr39823585198235990-3'-UTR,CDS,intron-Distal,intron-Proximal3.204283.40321HepG2GRWD1
chr39823599698236036-3'-UTR,CDS,intron-Distal,intron-Proximal4.050013.77215K562U2AF2
chr39823472398234780-3'-UTR,intron-Distal4.155634.65489K562IGF2BP1
chr39823594998235996-3'-UTR,CDS,intron-Distal,intron-Proximal3.469374.29829K562U2AF2
chr39823459598234647-3'-UTR,CDS,intron-Distal4.097663.19904K562TIA1
chr39824152398241679-5'-UTR,intron-Distal,intron-Proximal3.9571111.37324HepG2EFTUD2
chr39824059998240704-5'-UTR,intron-Distal,intron-Proximal3.344695.11767HepG2QKI
chr39824110598241176-5'-UTR,intron-Distal4.177085.59994HepG2XPO5
chr39823569198235736-CDS,intron-Distal,intron-Proximal3.371867.49481K562U2AF2
chr39823569198235737-CDS,intron-Distal,intron-Proximal4.184004.20812K562U2AF1
chr39823569298235761-CDS,intron-Distal,intron-Proximal4.314013.93614HepG2AQR
chr39823569098235738-CDS,intron-Distal,intron-Proximal3.410786.96989HepG2U2AF2
chr39823584798235934-CDS,intron-Distal,intron-Proximal4.133943.86479HepG2PRPF8
chr39823551098235603-CDS,intron-Distal,intron-Proximal4.555974.77152K562IGF2BP1
chr39823807698238115-intron-Distal3.520053.16095HepG2U2AF2
chr39823798798238054-intron-Distal3.645108.77242HepG2U2AF2
chr39823577098235870-intron-Distal,intron-Proximal3.827807.82071K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLDND1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLDND1 is not available on ENCORE database.

  • 99 RBPs can affect the levels of CLDND1.  








The Knockdown/knockout RNA-Seq assay for CLDND1 is not available on ENCORE database.





99 RBPs can affect the gene expression of CLDND1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLDND1ENSG00000080822.12917.222001371.95350-0.580905.176903.92920HepG2ABCF1
CLDND1ENSG00000080822.12889.235201064.70650-0.259802.560301.97160HepG2ACO1
CLDND1ENSG00000080822.12906.004101069.76450-0.239702.078001.39990HepG2AKAP8L
CLDND1ENSG00000080822.121377.057401795.13220-0.382502.905302.10300HepG2ASCC1
CLDND1ENSG00000080822.121687.193401316.325400.358005.045304.16450HepG2AUH
CLDND1ENSG00000080822.12634.48920897.81420-0.500802.853601.90050HepG2BCCIP
CLDND1ENSG00000080822.12779.684101125.94500-0.530202.106001.57870HepG2BOP1
CLDND1ENSG00000080822.121830.068301231.643300.571208.544707.29490HepG2CALR
CLDND1ENSG00000080822.12779.244801064.54210-0.450106.768305.81150HepG2CKAP4
CLDND1ENSG00000080822.12738.367101413.32510-0.936707.741206.47230HepG2CNOT7
CLDND1ENSG00000080822.12400.77320554.65260-0.468802.699101.63460HepG2CSTF2
CLDND1ENSG00000080822.121875.696901446.175200.375106.220705.17210HepG2DAZAP1
CLDND1ENSG00000080822.12788.60380984.73180-0.320403.677902.73470HepG2DDX19B
CLDND1ENSG00000080822.12472.91970941.20640-0.9929014.8513013.42500HepG2DDX21
CLDND1ENSG00000080822.12815.217201018.65300-0.321403.126002.41250HepG2DKC1
CLDND1ENSG00000080822.12844.984401046.04940-0.308003.643102.91420HepG2DNAJC2
CLDND1ENSG00000080822.12563.129301075.53610-0.933505.279004.04050HepG2EEF2
CLDND1ENSG00000080822.121234.180901716.25050-0.475704.088503.37700HepG2EIF2S1
CLDND1ENSG00000080822.12665.827101040.78800-0.644507.629905.80240HepG2EIF2S2
CLDND1ENSG00000080822.12947.592401896.69240-1.0011013.4486012.06300HepG2EIF4A3
CLDND1ENSG00000080822.121065.446501846.63160-0.793407.163006.08380HepG2EIF4B
CLDND1ENSG00000080822.12889.129101913.58070-1.1058018.7400017.11950HepG2FXR1
CLDND1ENSG00000080822.121127.138801775.18060-0.655306.725505.70840HepG2G3BP1
CLDND1ENSG00000080822.121249.404601884.51130-0.592906.344604.98670HepG2G3BP2
CLDND1ENSG00000080822.121190.323201797.40530-0.594606.882505.81950HepG2HNRNPK
CLDND1ENSG00000080822.12974.970301317.43620-0.434306.233805.25970HepG2HNRNPL
CLDND1ENSG00000080822.12760.10460955.86870-0.330602.341101.46500HepG2HNRNPM
CLDND1ENSG00000080822.12727.619701177.34930-0.6943013.7088012.44560HepG2HNRNPU
CLDND1ENSG00000080822.121135.751101804.45140-0.667907.587406.52630HepG2IGF2BP2
CLDND1ENSG00000080822.12926.245901202.62590-0.376705.606004.59450HepG2ILF2
CLDND1ENSG00000080822.121215.255501814.93390-0.578704.408903.11710HepG2KHSRP
CLDND1ENSG00000080822.12785.08210973.31690-0.310103.458202.31760HepG2KIF1C
CLDND1ENSG00000080822.121264.759501836.93080-0.538404.068103.05730HepG2LARP4
CLDND1ENSG00000080822.12741.004801047.82090-0.499803.702302.29440HepG2LIN28B
CLDND1ENSG00000080822.121030.454201914.24830-0.8935012.3963011.04470HepG2MAGOH
CLDND1ENSG00000080822.12857.114801924.97880-1.1673018.0637016.56410HepG2MATR3
CLDND1ENSG00000080822.121288.76040941.520800.452803.866902.42970HepG2NAA15
CLDND1ENSG00000080822.121059.028701970.33640-0.8957012.1627010.88070HepG2NCBP2
CLDND1ENSG00000080822.12518.84960810.41160-0.643302.721101.63740HepG2NONO
CLDND1ENSG00000080822.121239.264701754.77530-0.501804.437203.53540HepG2PABPC4
CLDND1ENSG00000080822.12922.319301165.39280-0.337503.775102.80330HepG2PARN
CLDND1ENSG00000080822.12954.273401740.84360-0.8673011.4942010.39450HepG2PCBP1
CLDND1ENSG00000080822.12563.830401254.25150-1.153508.846207.11140HepG2PCBP2
CLDND1ENSG00000080822.12498.18350681.09540-0.451202.458501.69520HepG2PRPF8
CLDND1ENSG00000080822.12931.861901771.24950-0.9266012.6768011.67490HepG2PTBP1
CLDND1ENSG00000080822.12828.924801368.81360-0.7236010.791509.71780HepG2PUF60
CLDND1ENSG00000080822.121087.268001452.96900-0.418306.974106.12120HepG2PUM1
CLDND1ENSG00000080822.121218.940001918.57110-0.654407.408006.45900HepG2QKI
CLDND1ENSG00000080822.121708.582301210.601600.497002.416101.75430HepG2RAVER1
CLDND1ENSG00000080822.12706.889601263.14340-0.8375016.2438015.19890HepG2RBM22
CLDND1ENSG00000080822.12734.995101202.92990-0.710706.887105.31580HepG2RBM27
CLDND1ENSG00000080822.12956.841501971.33360-1.0428012.5491011.55240HepG2NELFE
CLDND1ENSG00000080822.121020.975801835.84260-0.8465011.4841010.35770HepG2RECQL
CLDND1ENSG00000080822.12466.31500849.56350-0.865405.228504.41390HepG2RPS19
CLDND1ENSG00000080822.12577.962701109.49130-0.9408010.828109.33000HepG2RPS2
CLDND1ENSG00000080822.12891.516001419.15800-0.670705.328604.21330HepG2RPS3A
CLDND1ENSG00000080822.12820.058001132.47320-0.465703.289802.11380HepG2RPS5
CLDND1ENSG00000080822.12566.28020852.81480-0.590702.349601.48020HepG2SERBP1
CLDND1ENSG00000080822.121075.287901399.09470-0.379801.960001.39030HepG2SF3A3
CLDND1ENSG00000080822.12861.608001844.32160-1.0980014.8691013.66540HepG2SF3B4
CLDND1ENSG00000080822.12767.754601222.73160-0.6714015.2385013.91390HepG2SMN1
CLDND1ENSG00000080822.122034.814801231.780100.724105.692404.56270HepG2SNRNP70
CLDND1ENSG00000080822.122607.862601426.696600.8701033.2918032.05690HepG2SRFBP1
CLDND1ENSG00000080822.121138.080901924.98180-0.758208.844208.10650HepG2SRSF1
CLDND1ENSG00000080822.121109.195401351.39970-0.284903.438002.75370HepG2SRSF5
CLDND1ENSG00000080822.12983.805201238.75000-0.332403.871103.28710HepG2SSB
CLDND1ENSG00000080822.121176.61930935.503200.330702.631201.71280HepG2SUPT6H
CLDND1ENSG00000080822.121232.129001729.99700-0.489605.246904.51600HepG2TAF15
CLDND1ENSG00000080822.12904.570901384.27750-0.613802.472201.45970HepG2TBRG4
CLDND1ENSG00000080822.12577.330501144.07030-0.9867019.0523017.95680HepG2TIAL1
CLDND1ENSG00000080822.12817.806001154.23790-0.497107.490906.64000HepG2TRIM56
CLDND1ENSG00000080822.121050.476001337.13070-0.348103.322302.35860HepG2TUFM
CLDND1ENSG00000080822.12888.017801240.78090-0.482607.666306.59890HepG2UPF1
CLDND1ENSG00000080822.12943.37250802.754300.232801.994201.41000HepG2ZC3H8
CLDND1ENSG00000080822.121808.629901364.624500.406308.207107.39460HepG2ZNF622
CLDND1ENSG00000080822.122043.355001375.899400.5705012.1831011.08610K562AGGF1
CLDND1ENSG00000080822.121913.722601431.668100.418604.126703.32630K562AKAP8L
CLDND1ENSG00000080822.121178.698101541.05280-0.386703.077702.46540K562AQR
CLDND1ENSG00000080822.12672.40570829.73410-0.303302.465801.56280K562BCLAF1
CLDND1ENSG00000080822.121035.562701567.22880-0.597803.395702.19550K562CNOT7
CLDND1ENSG00000080822.121192.412801494.38610-0.325702.910602.10730K562CPSF6
CLDND1ENSG00000080822.121133.705801561.33560-0.461707.469406.46950K562DDX47
CLDND1ENSG00000080822.12375.23400566.48730-0.594302.657901.67710K562EIF3A
CLDND1ENSG00000080822.12587.33330814.45700-0.471704.902503.85820K562EIF3G
CLDND1ENSG00000080822.12645.25560886.54450-0.458303.808802.85050K562EIF4A3
CLDND1ENSG00000080822.121456.241901765.73530-0.278002.804801.86090K562EIF4G2
CLDND1ENSG00000080822.121146.23460875.585200.388502.657201.55610K562FKBP4
CLDND1ENSG00000080822.12937.49880720.023800.380703.222401.76550K562FUS
CLDND1ENSG00000080822.12723.12810921.97230-0.350503.146302.50730K562FXR1
CLDND1ENSG00000080822.12788.136801008.51630-0.355702.720702.12850K562HNRNPC
CLDND1ENSG00000080822.121114.348301411.02440-0.340502.846501.77160K562HNRNPL
CLDND1ENSG00000080822.12825.974901065.67830-0.367603.641102.61600K562HNRNPU
CLDND1ENSG00000080822.121987.230401519.419500.387102.295601.55280K562KIF1C
CLDND1ENSG00000080822.12931.947901249.89030-0.423504.056503.03300K562MAGOH
CLDND1ENSG00000080822.121045.332301392.69440-0.413903.927702.87290K562METAP2
CLDND1ENSG00000080822.12821.015501019.38210-0.312202.774301.96370K562MTPAP
CLDND1ENSG00000080822.121927.049401193.060900.691603.807702.72850K562NAA15
CLDND1ENSG00000080822.12839.400501132.66560-0.432306.889205.78480K562NSUN2
CLDND1ENSG00000080822.12779.692301112.16090-0.512405.065203.73400K562PCBP2
CLDND1ENSG00000080822.12813.35390639.266100.347402.032701.38550K562PRPF8
CLDND1ENSG00000080822.12927.529001214.31880-0.388703.729402.96890K562PTBP1
CLDND1ENSG00000080822.123054.313201419.948201.1049023.4249021.86400K562PUS1
CLDND1ENSG00000080822.122295.798601383.420900.7307011.7674010.55360K562RBM15
CLDND1ENSG00000080822.12905.273601164.59030-0.363402.835201.98410K562RBM22
CLDND1ENSG00000080822.12823.594501225.49740-0.573405.691604.04240K562NELFE
CLDND1ENSG00000080822.12730.05880991.62230-0.441802.985001.94170K562RPS3
CLDND1ENSG00000080822.121767.704701008.461800.809603.169101.85710K562SF1
CLDND1ENSG00000080822.12705.67250957.40600-0.440103.757402.50180K562SRSF4
CLDND1ENSG00000080822.12941.814601204.84800-0.355302.548301.86770K562TARDBP
CLDND1ENSG00000080822.12933.470101162.18830-0.316202.548601.76680K562TIA1
CLDND1ENSG00000080822.12634.16440869.72850-0.455703.152802.14920K562TIAL1
CLDND1ENSG00000080822.121490.291601034.025900.527203.793502.47030K562U2AF1
CLDND1ENSG00000080822.121475.400001067.889700.466205.750704.59310K562U2AF2
CLDND1ENSG00000080822.12504.08080667.07010-0.404202.503901.37160K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLDND1 is not available on ENCORE database.





25 RBPs can affect the splicing of CLDND1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECLDND1ENSG00000080822.12chr3-9824049698240562982399769824028698241692982418290.073000.000080.01261includedHepG2G3BP1
SECLDND1ENSG00000080822.12chr3-9824049698240547982399769824028698241692982417460.177000.000100.01070includedHepG2RBM22
SECLDND1ENSG00000080822.12chr3-982356439823572398234327982346769823589598235991-0.282000.000050.05547excludedK562TROVE2
SECLDND1ENSG00000080822.12chr3-982356439823572398234327982346769823589598236004-0.412000.000010.00151excludedK562XRCC6
SECLDND1ENSG00000080822.12chr3-982356439823572398234327982346769823589598236004-0.381000.000100.01695excludedK562FMR1
SECLDND1ENSG00000080822.12chr3-9824049698240547982399769824028698241692982417460.157000.000110.03443includedHepG2DKC1
SECLDND1ENSG00000080822.12chr3-9824049698240562982399769824028698241692982418290.069000.000010.00131includedHepG2QKI
SECLDND1ENSG00000080822.12chr3-9824049698240547982399769824028698241692982417460.052000.001480.07612includedHepG2AKAP1
SECLDND1ENSG00000080822.12chr3-982356439823572398234327982346769823589598236004-0.316000.000010.01574excludedK562PHF6
SECLDND1ENSG00000080822.12chr3-982356439823572398234327982346769823589598236004-0.161000.000850.01070excludedK562AQR
SECLDND1ENSG00000080822.12chr3-9824049698240562982399769824028698241692982418290.092000.000080.00530includedK562FXR1
SECLDND1ENSG00000080822.12chr3-9824049698240562982399769824028698241692982418290.055000.001620.08004includedHepG2NCBP2
SECLDND1ENSG00000080822.12chr3-9824049698240547982399769824028698241692982417460.053000.000160.01167includedHepG2PTBP1
SECLDND1ENSG00000080822.12chr3-9824049698240562982399769824028698241692982418290.148000.000130.02981includedHepG2HNRNPA1
SECLDND1ENSG00000080822.12chr3-9824049698240547982399769824028198241692982417460.581000.000470.02388includedHepG2MATR3
SECLDND1ENSG00000080822.12chr3-9824049698240562982399769824028698241692982418290.110000.000190.02825includedHepG2LARP4
SECLDND1ENSG00000080822.12chr3-9824049698240547982399769824028698241692982417460.074000.000040.00153includedHepG2SRSF1
SECLDND1ENSG00000080822.12chr3-982399769824028698237728982378399824169298241887-0.065000.000790.02116excludedHepG2SRSF1
SECLDND1ENSG00000080822.12chr3-9824049698240547982399769824028698241692982417460.130000.000000.00000includedHepG2PCBP1
SECLDND1ENSG00000080822.12chr3-982399769824028698237728982378399824169298241887-0.057000.002210.08683excludedHepG2PCBP1
SECLDND1ENSG00000080822.12chr3-982356439823572398234327982346769823589598236004-0.112000.000660.09228excludedK562EIF4G2
SECLDND1ENSG00000080822.12chr3-9824049698240547982399769824028698241692982417460.082000.000010.00342includedK562RBM22
SECLDND1ENSG00000080822.12chr3-9824049698240547982399769824028698241692982417460.060000.000280.01409includedK562TARDBP
SECLDND1ENSG00000080822.12chr3-9824049698240562982399769824028698241692982418290.154000.000000.00402includedHepG2YBX3
SECLDND1ENSG00000080822.12chr3-9824049698240547982399769824028698241692982417460.121000.000000.00000includedHepG2SRSF9
SECLDND1ENSG00000080822.12chr3-9824049698240547982399769824028698241692982417460.079000.000080.02047includedHepG2KHSRP
A3SSCLDND1ENSG00000080822.12chr3-982343269823572398234326982346769823589598236033-0.215000.000000.00032shorterK562XRCC6
A3SSCLDND1ENSG00000080822.12chr3-9823562598235759982356259823572398235895982360330.078000.000420.08055longerHepG2TAF15
A3SSCLDND1ENSG00000080822.12chr3-9823772898237858982377289823783998239976982400450.100000.000000.00000longerK562AQR
A3SSCLDND1ENSG00000080822.12chr3-9823562598235782982356259823572398235895982360330.122000.000000.00004longerK562AQR
A3SSCLDND1ENSG00000080822.12chr3-982343269823572398234326982346769823589598236033-0.051000.001530.01014shorterK562AQR
A3SSCLDND1ENSG00000080822.12chr3-982343269823572398234326982346769823589598236033-0.094000.000010.00875shorterK562FMR1
A3SSCLDND1ENSG00000080822.12chr3-982343269823572398234326982346769823589598236033-0.086000.000050.07167shorterK562PHF6
A3SSCLDND1ENSG00000080822.12chr3-9823554698235782982355469823572398235895982360330.089000.000060.00773longerHepG2SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CLDND1 is not avaliable on ENCORE database.