TRIM56

General Information

Gene Name       : TRIM56
Gene ID             : ENSG00000169871.12
Essential Gene : No

Functions

Localization(RBPImage: TRIM56)

Domains (AlphaFold: TRIM56)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRIM56ENSG00000169871.1212.4813.2512.87ENCSR000AEF
HepG2TRIM56ENSG00000169871.125.663.634.64ENCSR985KAT
K562TRIM56ENSG00000169871.1210.888.979.93ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq TRIM56-BGKLV21-K562ENCSR300QFQTRIM56K562ReleasedENCSR572FFX   shRNAKD% = 81.3,75.7
knockdown followed by RNA-seq TRIM56-BGHLV20-HepG2ENCSR309HXKTRIM56HepG2ReleasedENCSR305XWT   shRNAKD% = 64.1,59.8






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
TRIM56ENCAB769WDYA301-212A1BGHLV20-61, Released, ENCODE3BGKLV21-63, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
TRIM56K562shRNAENCSR300QFQENCSR572FFXTRIM56_BGKLV21_63_17590,TRIM56_BGKLV21_64_17591non-target_BGKLV21_1,non-target_BGKLV21_281.3,75.7ReleasedENCODE3
TRIM56K562shRNABGKLV40-21,BGKLV40-22BGKLV40-1,BGKLV40-279.0,64.0OthersENCODE4
TRIM56HepG2shRNAENCSR309HXKENCSR305XWTTRIM56-BGHLV20-61_17740,TRIM56-BGHLV20-62_17741non-target-BGHLV20-1_17706,non-target-BGHLV20-2_1770764.1,59.8ReleasedENCODE3
TRIM56HepG2shRNABGHLV39-21,BGHLV39-22BGHLV39-1,BGHLV39-256.0,65.0OthersENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    TRIM56: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Speckles
  • Cytoplasm
  • Compartment/Organelle
  • P bodies
  • Cytosolic
  • Nuclear release mitosis












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    TRIM56Product_ID: A301-212A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: TRIM56-human    		 TRIM56_Secondary_Western.png<br>Caption: Western blot following shRNA against TRIM56 in K562 and HepG2 whole cell lysate using TRIM56 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against TRIM56. Lanes 5-8 follow the same pattern, but in HepG2. TRIM56 protein appears as the green band, Tubulin serves as a control and appears in red.
    		 TRIM56_Secondary_Western.png<br>Caption: Western blot following shRNA against TRIM56 in K562 and HepG2 whole cell lysate using TRIM56 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against TRIM56. Lanes 5-8 follow the same pattern, but in HepG2. TRIM56 protein appears as the green band, Tubulin serves as a control and appears in red.








    RNA Targets

    • eCLIP assay for TRIM56 is not avaliable on ENCORE database.



    Proteins bound to RNA
    • TRIM56 RNA is bound by 19 proteins.  







    eCLIP assay for TRIM56 is not avaliable on ENCORE database.





    19 proteins are bound to TRIM56 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr7100732963100733020+3'-UTR,intron-Distal3.349396.64080K562FAM120A
    chr7100732872100732954+3'-UTR,intron-Distal3.563745.01332HepG2GTF2F1
    chr7100732858100732970+3'-UTR,intron-Distal4.121039.81238HepG2UPF1
    chr7100732884100732966+3'-UTR,intron-Distal3.715639.72617K562SLTM
    chr7100733348100733407+3'-UTR,intron-Distal,intron-Proximal5.138648.55117K562LIN28B
    chr7100732859100732962+3'-UTR,intron-Distal3.651608.35118HepG2PRPF4
    chr7100733180100733251+3'-UTR,intron-Distal,intron-Proximal4.952196.50154HepG2HLTF
    chr7100732902100732970+3'-UTR,intron-Distal4.267633.98353K562RBM15
    chr7100733351100733404+3'-UTR,intron-Distal,intron-Proximal4.284884.89596HepG2LIN28B
    chr7100732968100733048+3'-UTR,intron-Distal4.6268317.66749K562UPF1
    chr7100733220100733268+3'-UTR,intron-Distal,intron-Proximal3.283875.55082K562SLTM
    chr7100732895100732968+3'-UTR,intron-Distal6.9907631.18808K562UPF1
    chr7100733229100733290+3'-UTR,intron-Distal,intron-Proximal3.319934.33455K562LIN28B
    chr7100732886100732959+3'-UTR,intron-Distal3.718499.60676K562GTF2F1
    chr7100733205100733288+3'-UTR,intron-Distal,intron-Proximal4.2844015.27977K562UPF1
    chr7100732887100732974+3'-UTR,intron-Distal3.650496.58424K562DDX6
    chr7100732970100733061+3'-UTR,intron-Distal4.745404.78313HepG2UPF1
    chr7100730593100730636+5'-UTR,CDS4.174033.59941K562UCHL5
    chr7100730354100730406+5'-UTR4.192753.28264K562YWHAG
    chr7100732585100732651+CDS,intron-Distal3.765348.01794HepG2HLTF
    chr7100732571100732637+CDS,intron-Distal3.268403.80098K562YWHAG
    chr7100730890100730942+CDS4.023903.49905HepG2PPIG
    chr7100730719100730790+CDS4.098896.83513K562FMR1
    chr7100730868100730927+CDS4.224667.17313K562FMR1
    chr7100732578100732644+CDS,intron-Distal4.3121014.49869K562SLTM
    chr7100734925100734960+CDS3.942485.99105K562UPF1
    chr7100734916100734973+CDS,intron-Proximal3.503429.32561K562AKAP1
    chr7100732676100732761+CDS,intron-Distal4.3090311.33404HepG2XPO5
    chr7100730840100730890+CDS3.437703.59112HepG2PPIG
    chr7100731744100731798+CDS,intron-Distal3.704945.78686K562SLTM
    chr7100732572100732638+CDS,intron-Distal3.548584.76224HepG2NKRF
    chr7100731061100731132+CDS3.240147.25354K562SLTM
    chr7100731703100731742+CDS,intron-Distal4.221074.48994K562RBM15
    chr7100731739100731826+CDS,intron-Distal3.087303.23249K562SRSF1
    chr7100731348100731398+CDS4.248676.47842K562SLTM
    chr7100730848100730946+CDS4.6883811.24739K562FXR2
    chr7100731789100731853+CDS,intron-Distal3.543454.22917HepG2PPIG
    chr7100731890100731981+CDS,intron-Distal3.866974.49347K562UCHL5
    chr7100734088100734164+intron-Distal3.462209.34167K562UPF1
    chr7100734079100734134+intron-Distal3.211144.50097K562FUS
    chr7100734623100734667+intron-Distal4.045376.74636K562UPF1
    chr7100734005100734059+intron-Distal3.0286910.43380K562UPF1
    chr7100734461100734548+intron-Distal3.662106.61019K562FUS
    chr7100734442100734501+intron-Distal6.2131718.09796K562UPF1
    chr7100728915100728978+intron-Distal,intron-Proximal3.136916.48709K562SLTM
    chr7100734501100734580+intron-Distal4.6527415.91350K562UPF1
    chr7100734400100734442+intron-Distal5.199438.41097K562UPF1
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for TRIM56 is not avaliable on ENCORE database.



    Diffrential Expression
    • 11,541 differentially expressed genes after Knockdown/Knockout TRIM56 protein.  





    • 57 RBPs can affect the levels of TRIM56.  







    11,541 differentially expressed genes after Knockdown/Knockout TRIM56 protein :

    Only display 100 entries as example. Please click "View All" button to see all 11,541 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    C1orf112ENSG00000000460.12124.22570356.96270-1.5228012.6079011.53140HepG2TRIM56
    NFYAENSG00000001167.10658.855201010.21050-0.616608.465007.56390HepG2TRIM56
    NIPAL3ENSG00000001461.12384.71150280.676200.454803.165202.57120HepG2TRIM56
    LAS1LENSG00000001497.12522.98440658.46170-0.332302.373901.84320HepG2TRIM56
    SEMA3FENSG00000001617.7474.06810304.944000.636406.345205.55400HepG2TRIM56
    CYP51A1ENSG00000001630.113323.255602904.262700.194302.513501.97060HepG2TRIM56
    KRIT1ENSG00000001631.10451.36780586.98010-0.379003.180802.58580HepG2TRIM56
    RAD52ENSG00000002016.12152.90580214.91230-0.491102.368001.83780HepG2TRIM56
    BADENSG00000002330.9176.6949046.469201.9268013.9093012.78230HepG2TRIM56
    CD99ENSG00000002586.132520.571601656.120500.6058015.9641014.76270HepG2TRIM56
    MAD1L1ENSG00000002822.11273.23780195.430700.483402.662902.10690HepG2TRIM56
    LASP1ENSG00000002834.134222.285806622.65980-0.6494024.5418023.06630HepG2TRIM56
    SNX11ENSG00000002919.1099.46420206.32600-1.052707.557006.70210HepG2TRIM56
    M6PRENSG00000003056.32660.912502170.558400.293804.456003.77470HepG2TRIM56
    DBNDD1ENSG00000003249.91258.37220634.101000.9887026.7186025.19050HepG2TRIM56
    TFPIENSG00000003436.108776.304207552.781200.216503.589202.96480HepG2TRIM56
    NDUFAF7ENSG00000003509.11452.89700605.43730-0.418803.757803.12260HepG2TRIM56
    SLC7A2ENSG00000003989.121863.711004995.47920-1.4224096.5099093.81850HepG2TRIM56
    ARF5ENSG00000004059.61066.30730718.638100.569209.261608.32230HepG2TRIM56
    PLXND1ENSG00000004399.85179.450701619.282301.6773089.0475086.48110HepG2TRIM56
    KDM1AENSG00000004487.111916.806303172.27650-0.7268024.3986022.92920HepG2TRIM56
    RECQLENSG00000004700.11477.79980718.23090-0.588007.718606.85390HepG2TRIM56
    CCDC132ENSG00000004766.11225.08060313.06550-0.476002.948102.37040HepG2TRIM56
    CDC27ENSG00000004897.71598.915902953.95730-0.8856034.0881032.38580HepG2TRIM56
    UPF1ENSG00000005007.81776.910101159.749300.6155013.9424012.81430HepG2TRIM56
    SKAP2ENSG00000005020.8360.08860584.50380-0.698908.904807.98290HepG2TRIM56
    LIG3ENSG00000005156.7394.33300741.10070-0.9103016.4174015.19690HepG2TRIM56
    RPAP3ENSG00000005175.5298.46190467.31620-0.646906.588605.78430HepG2TRIM56
    ACSM3ENSG00000005187.7518.18890655.85440-0.339902.935302.35870HepG2TRIM56
    AC004381.6ENSG00000005189.15111.54440256.83690-1.2032011.4152010.38550HepG2TRIM56
    CIAPIN1ENSG00000005194.10750.59430929.51230-0.308401.794401.32030HepG2TRIM56
    SPPL2BENSG00000005206.12644.17790177.905001.8563035.4840033.75290HepG2TRIM56
    CREBBPENSG00000005339.81602.743101388.146600.207302.033701.53600HepG2TRIM56
    PON1ENSG00000005421.422.906705.121802.160902.937602.36080HepG2TRIM56
    RHBDD2ENSG00000005486.12860.25900337.630801.3492035.1312033.40600HepG2TRIM56
    IBTKENSG00000005700.101463.626702293.44240-0.6480017.0875015.84600HepG2TRIM56
    ZNF195ENSG00000005801.12384.36390498.68020-0.375602.891202.31790HepG2TRIM56
    MYCBP2ENSG00000005810.13948.247001308.73120-0.464807.250306.41280HepG2TRIM56
    FBXL3ENSG00000005812.6258.77100422.11480-0.706002.903202.32890HepG2TRIM56
    PDK2ENSG00000005882.7588.48670387.619300.602305.845505.07980HepG2TRIM56
    ITGA3ENSG00000005884.13274.99700123.016801.160508.550907.64550HepG2TRIM56
    LAMP2ENSG00000005893.113376.006004023.84130-0.253303.928603.28050HepG2TRIM56
    GGNBP2ENSG00000005955.8892.744301052.50970-0.237502.166701.65550HepG2TRIM56
    ASB4ENSG00000005981.8137.99720211.72760-0.617603.265802.66460HepG2TRIM56
    GDE1ENSG00000006007.72774.865701757.050200.6592019.3207018.00200HepG2TRIM56
    C19orf60ENSG00000006015.1371.1318032.425601.133303.431802.81870HepG2TRIM56
    OSBPL7ENSG00000006025.7275.22970187.980400.550003.469902.85380HepG2TRIM56
    TMEM98ENSG00000006042.71150.074701379.18850-0.262102.835202.26600HepG2TRIM56
    MAP3K14ENSG00000006062.9115.7872075.747300.612101.970701.47920HepG2TRIM56
    SYNRGENSG00000006114.11549.85820810.98250-0.560607.615706.75700HepG2TRIM56
    TMEM132AENSG00000006118.10926.17700414.122601.1611028.6527027.07740HepG2TRIM56
    CX3CL1ENSG00000006210.62106.093901337.745500.6547015.2210014.04710HepG2TRIM56
    TNFRSF12AENSG00000006327.91133.70600418.052801.4392047.0060045.06000HepG2TRIM56
    JHDM1DENSG00000006459.61299.010601984.34600-0.6113014.2704013.13110HepG2TRIM56
    AGKENSG00000006530.11464.63090615.56940-0.405803.753403.11870HepG2TRIM56
    ALDH3B1ENSG00000006534.11167.2577089.492600.902104.910104.20230HepG2TRIM56
    PHTF2ENSG00000006576.12215.20430397.67790-0.885909.816708.85410HepG2TRIM56
    FARP2ENSG00000006607.9747.11480985.68240-0.399804.669803.97570HepG2TRIM56
    DBF4ENSG00000006634.3242.70290450.19940-0.8914011.0804010.06410HepG2TRIM56
    GTF2IRD1ENSG00000006704.6696.01690407.920700.7707011.8435010.79440HepG2TRIM56
    VPS41ENSG00000006715.11634.71570756.61580-0.253501.957801.46750HepG2TRIM56
    PNPLA4ENSG00000006757.7286.22110212.807800.427502.291901.76880HepG2TRIM56
    ADIPOR2ENSG00000006831.92300.905602962.78350-0.364806.018405.24350HepG2TRIM56
    MARK4ENSG00000007047.10945.56120541.368000.8045015.4218014.24070HepG2TRIM56
    CCDC124ENSG00000007080.6199.16120116.237600.776804.433603.75390HepG2TRIM56
    PAFAH1B1ENSG00000007168.81295.586401807.22460-0.480209.208308.27210HepG2TRIM56
    KIAA0100ENSG00000007202.102890.722103472.95480-0.264704.127503.46670HepG2TRIM56
    TRAPPC6AENSG00000007255.6129.0724044.066301.550308.764907.84920HepG2TRIM56
    RPUSD1ENSG00000007376.3187.1974057.793001.6955013.9671012.83780HepG2TRIM56
    RHBDF1ENSG00000007384.11352.18200203.961200.787907.294106.45470HepG2TRIM56
    BAIAP3ENSG00000007516.9304.2825071.668402.0859028.9117027.32800HepG2TRIM56
    TSR3ENSG00000007520.3291.5540094.279701.6286011.4676010.43630HepG2TRIM56
    PIGQENSG00000007541.10231.59790111.004201.060905.440704.70130HepG2TRIM56
    TEAD3ENSG00000007866.14870.87920697.388500.320403.108402.51860HepG2TRIM56
    DNAJC11ENSG00000007923.111482.614801205.625300.298302.757202.19380HepG2TRIM56
    E2F2ENSG00000007968.682.74790164.92290-0.995005.753904.99430HepG2TRIM56
    CDKL5ENSG00000008086.656.47930105.24940-0.898003.453402.83910HepG2TRIM56
    CDK11AENSG00000008128.18607.70610399.483100.605107.093306.26270HepG2TRIM56
    SYPL1ENSG00000008282.3934.639001270.01160-0.442405.435004.69580HepG2TRIM56
    CYB561ENSG00000008283.1183.6759034.362701.283903.982403.32990HepG2TRIM56
    SPAG9ENSG00000008294.162318.068003178.09070-0.4552010.335309.35070HepG2TRIM56
    CELSR3ENSG00000008300.101038.80870712.455600.544008.455207.55480HepG2TRIM56
    AASSENSG00000008311.10251.67470497.67350-0.9836013.8641012.73830HepG2TRIM56
    MPNDENSG00000008382.11132.8748087.536800.602002.138401.63030HepG2TRIM56
    MGST1ENSG00000008394.81607.490101908.22870-0.247402.896102.32230HepG2TRIM56
    NFIXENSG00000008441.12655.12080341.597200.9394012.1266011.06810HepG2TRIM56
    IL32ENSG00000008517.122287.160501549.753800.5614013.6062012.49180HepG2TRIM56
    PKD1ENSG00000008710.131036.42890305.372501.7629011.3903010.36180HepG2TRIM56
    SEC62ENSG00000008952.121669.299602337.17580-0.4855010.146709.17120HepG2TRIM56
    RPS20ENSG00000008988.55720.884204341.276900.398009.670008.71300HepG2TRIM56
    CSDE1ENSG00000009307.118473.6230010455.66900-0.303206.499705.70100HepG2TRIM56
    UBE3CENSG00000009335.131577.235001280.570500.300503.843703.20160HepG2TRIM56
    REV3LENSG00000009413.11937.860901394.49910-0.5723010.887109.87760HepG2TRIM56
    MASP2ENSG00000009724.12191.1631091.559901.061903.659503.03000HepG2TRIM56
    POMT2ENSG00000009830.7521.13370422.708900.301901.994401.50040HepG2TRIM56
    VTA1ENSG00000009844.111024.225501859.28130-0.8602026.0892024.57750HepG2TRIM56
    MLXIPLENSG00000009950.112273.884901284.756400.8236013.1840012.08350HepG2TRIM56
    BAZ1BENSG00000009954.61639.094402684.13560-0.7116021.8943020.49810HepG2TRIM56
    RANBP9ENSG00000010017.91007.809801485.89160-0.5601010.805609.80060HepG2TRIM56
    METTL13ENSG00000010165.15378.03360502.79620-0.411503.311202.70650HepG2TRIM56
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    57 RBPs can affect the gene expression of TRIM56 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    TRIM56ENSG00000169871.8208.45590332.48000-0.673503.722202.81570HepG2ASCC1
    TRIM56ENSG00000169871.8451.75670330.682400.450002.129101.57980HepG2DDX6
    TRIM56ENSG00000169871.8534.32840317.861500.749205.670904.83910HepG2EIF2S1
    TRIM56ENSG00000169871.8465.77640351.259100.407001.860301.33210HepG2EIF4A3
    TRIM56ENSG00000169871.8399.75520287.655700.474703.188002.42150HepG2HNRNPF
    TRIM56ENSG00000169871.8413.45270283.256100.545503.637702.81680HepG2IGF2BP1
    TRIM56ENSG00000169871.8420.22590304.199600.466003.418502.75950HepG2PCBP1
    TRIM56ENSG00000169871.8414.13890309.547600.419902.531602.00420HepG2PTBP1
    TRIM56ENSG00000169871.8461.92810296.001000.642007.216706.35240HepG2PUM1
    TRIM56ENSG00000169871.8365.77450487.91280-0.415703.365302.70210HepG2PUS1
    TRIM56ENSG00000169871.8401.88770509.27010-0.341602.238101.75870HepG2RBM22
    TRIM56ENSG00000169871.8290.02640194.849300.573703.709902.98290HepG2SAFB2
    TRIM56ENSG00000169871.8344.80180514.88870-0.578503.176602.45290HepG2SF3A3
    TRIM56ENSG00000169871.8443.95160322.255400.462103.253802.61910HepG2SF3B4
    TRIM56ENSG00000169871.8411.03180267.380400.620305.284204.36610HepG2SLBP
    TRIM56ENSG00000169871.8236.75920336.37450-0.506602.802502.32680HepG2SRSF1
    TRIM56ENSG00000169871.8409.03440275.317700.571004.796804.00980HepG2SRSF5
    TRIM56ENSG00000169871.8396.39860282.621500.488003.406302.64530HepG2SRSF7
    TRIM56ENSG00000169871.8472.16370273.666800.786809.331408.42280HepG2SRSF9
    TRIM56ENSG00000169871.8305.54580212.607600.523102.964502.44910HepG2TIAL1
    TRIM56ENSG00000169871.8362.76510272.425000.413102.239101.45890HepG2TUFM
    TRIM56ENSG00000169871.8506.02880288.372800.811205.593504.37550HepG2UBE2L3
    TRIM56ENSG00000169871.866.64510126.95960-0.929803.388902.55310HepG2UCHL5
    TRIM56ENSG00000169871.8926.52750651.451800.508104.295402.74980K562ABCF1
    TRIM56ENSG00000169871.8614.351401057.96550-0.7842014.1582012.97700K562AGGF1
    TRIM56ENSG00000169871.8829.678501162.55810-0.486704.587103.24700K562AKAP8
    TRIM56ENSG00000169871.8576.308401100.86450-0.9337013.9093012.27090K562AKAP8L
    TRIM56ENSG00000169871.8849.990201155.07840-0.442505.024003.75260K562ATP5C1
    TRIM56ENSG00000169871.8436.14210276.287000.658503.304102.34930K562BOP1
    TRIM56ENSG00000169871.8804.520401264.31560-0.652209.401107.22470K562CCDC124
    TRIM56ENSG00000169871.81050.64470816.425500.363803.664202.38470K562CPEB4
    TRIM56ENSG00000169871.8435.50920293.759000.568004.061903.11210K562CPSF6
    TRIM56ENSG00000169871.8685.703101184.58750-0.7887014.8234012.46720K562DKC1
    TRIM56ENSG00000169871.8613.56090463.412000.404802.433801.57920K562EFTUD2
    TRIM56ENSG00000169871.8651.81130514.965000.339902.748301.54530K562EIF2S1
    TRIM56ENSG00000169871.81044.46960647.922900.6888011.117809.82070K562EIF2S2
    TRIM56ENSG00000169871.8403.53640298.918800.432802.185101.42220K562FMR1
    TRIM56ENSG00000169871.894.84370248.58290-1.390109.328407.87620K562G3BP2
    TRIM56ENSG00000169871.8403.72490280.456800.525503.133702.29150K562GPKOW
    TRIM56ENSG00000169871.8661.90160863.40890-0.383402.657901.91650K562GRSF1
    TRIM56ENSG00000169871.8876.76650705.048300.314402.285901.31480K562HNRNPA1
    TRIM56ENSG00000169871.8540.55740354.878500.607004.806004.03990K562HNRNPC
    TRIM56ENSG00000169871.8516.93270316.890500.705905.993204.23000K562HNRNPF
    TRIM56ENSG00000169871.8233.74690385.23930-0.720804.338403.15670K562HNRNPM
    TRIM56ENSG00000169871.81049.14540780.770300.426104.585303.43090K562HNRNPU
    TRIM56ENSG00000169871.8547.099601168.28030-1.0945019.4196016.43520K562KIF1C
    TRIM56ENSG00000169871.8617.651601118.34150-0.8565011.474608.83340K562MAK16
    TRIM56ENSG00000169871.8644.834701308.77070-1.0212018.0719015.52050K562MBNL1
    TRIM56ENSG00000169871.8375.22350917.35460-1.2897014.6962012.14470K562NAA15
    TRIM56ENSG00000169871.81016.34550840.636400.273703.015102.24010K562NSUN2
    TRIM56ENSG00000169871.8318.01360450.95350-0.503902.774502.02450K562PRPF8
    TRIM56ENSG00000169871.8593.94020395.329600.587203.069202.37390K562PTBP1
    TRIM56ENSG00000169871.8337.514201091.73100-1.6936034.4484032.48730K562PUS1
    TRIM56ENSG00000169871.8425.927301063.74770-1.3205030.4933028.44350K562RBM15
    TRIM56ENSG00000169871.8309.25520459.34000-0.570803.113302.24460K562RPS19
    TRIM56ENSG00000169871.8454.21360673.94070-0.569305.528304.35970K562SYNCRIP
    TRIM56ENSG00000169871.8642.46380392.170500.712004.711103.78010K562TARDBP
    TRIM56ENSG00000169871.8568.69330378.322600.587902.487501.71760K562TIA1
    TRIM56ENSG00000169871.8161.47400325.10310-1.009607.855606.07200K562TRIM56
    TRIM56ENSG00000169871.81048.54710891.350300.234202.031801.41020K562UPF1
    TRIM56ENSG00000169871.8646.367201106.92630-0.776104.196802.49170K562UTP18
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for TRIM56 is not available on ENCORE database.





    3 RBPs can affect the splicing of TRIM56 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SETRIM56ENSG00000169871.8chr7+100730286100730449100728719100728852100730592100733909-0.112000.001270.01499excludedK562AQR
    SETRIM56ENSG00000169871.8chr7+1007290391007292521007287191007288521007302861007304490.080000.001510.03134includedK562U2AF1
    SETRIM56ENSG00000169871.8chr7+1007290391007292521007287191007288521007302861007304490.086000.000890.01803includedK562U2AF2
    A3SSTRIM56ENSG00000169871.8chr7+1007302571007304491007302861007304491007287191007288520.059000.000350.00272longerK562AQR

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for TRIM56 is not avaliable on ENCORE database.