NFIX

General Information

Gene Name       : NFIX
Gene ID             : ENSG00000008441.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NFIX)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NFIXENSG00000008441.160.140.190.17ENCSR000AEF
HepG2NFIXENSG00000008441.1610.504.927.71ENCSR985KAT
K562NFIXENSG00000008441.166.625.185.90ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NFIX is not avaliable on ENCORE database.



Proteins bound to RNA
  • NFIX RNA is bound by 30 proteins.  







eCLIP assay for NFIX is not avaliable on ENCORE database.





30 proteins are bound to NFIX RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191320717413207230+3'-UTR3.851403.56497HepG2FAM120A
chr191320739013207455+3'-UTR4.440945.10887HepG2FAM120A
chr191320714413207192+3'-UTR4.448337.31803K562AKAP1
chr191320695513207041+3'-UTR3.714547.04350HepG2PCBP2
chr191320743313207493+3'-UTR4.6638910.92855K562UPF1
chr191320601513206082+3'-UTR5.1074211.68253K562AKAP1
chr191320930713209391+3'-UTR3.793223.08588HepG2IGF2BP3
chr191320559213205667+3'-UTR3.792193.27226HepG2IGF2BP3
chr191320613213206217+3'-UTR5.0453713.02031K562UPF1
chr191320697613207030+3'-UTR4.150558.71030K562UPF1
chr191320609013206132+3'-UTR3.897648.62096K562UPF1
chr191320670413206775+3'-UTR3.7263010.73443K562UPF1
chr191320929213209394+3'-UTR5.1596621.86268HepG2PCBP2
chr191320769113207725+3'-UTR5.030926.81621K562UPF1
chr191320789913207936+3'-UTR3.086183.26079K562UPF1
chr191320862813208708+3'-UTR4.456586.21080HepG2PCBP2
chr191320602413206090+3'-UTR4.4138512.07826K562UPF1
chr191320705513207092+3'-UTR3.291895.05294K562UPF1
chr191320601313206089+3'-UTR5.346824.55547K562PCBP1
chr191313593113136044+3'-UTR,5'-UTR,CDS3.110914.24993HepG2PPIG
chr191320598813206083+3'-UTR4.114727.95735HepG2PCBP2
chr191320640713206450+3'-UTR5.530168.75071K562AKAP1
chr191318954813189623+3'-UTR,CDS,intron-Distal,intron-Proximal4.118604.49024K562AQR
chr191320852113208586+3'-UTR4.856827.70131HepG2PCBP2
chr191320718713207240+3'-UTR3.956095.97891K562FAM120A
chr191318643713186527+3'-UTR,CDS,intron-Proximal3.360498.16221HepG2PRPF8
chr191320717613207264+3'-UTR5.6982820.53732K562UPF1
chr191318951413189588+3'-UTR,CDS,intron-Distal,intron-Proximal4.176873.80506K562RBFOX2
chr191312304413123102+5'-UTR,intron-Distal,intron-Proximal3.306456.28777HepG2CSTF2T
chr191313603213136168+5'-UTR,CDS4.503065.64460HepG2GRWD1
chr191310698713107035+intron-Distal3.238926.89356HepG2CSTF2T
chr191311391413113956+intron-Distal3.842966.33179K562AGGF1
chr191311337513113458+intron-Distal4.139655.72412HepG2FAM120A
chr191310721513107276+intron-Distal4.406224.48497K562NONO
chr191311073013110801+intron-Distal4.886117.35173HepG2CSTF2T
chr191310911913109171+intron-Distal4.893085.39854K562PTBP1
chr191311564913115685+intron-Distal3.508004.05919K562AGGF1
chr191311400413114105+intron-Distal4.252036.87274K562HNRNPL
chr191311448313114501+intron-Distal3.023643.20628K562HNRNPL
chr191310708113107166+intron-Distal3.150926.20207HepG2CSTF2T
chr191311071313110790+intron-Distal4.047363.91243HepG2NKRF
chr191310750613107555+intron-Distal4.741185.17678K562EIF4G2
chr191310675513106856+intron-Distal,intron-Proximal4.043539.86887HepG2NKRF
chr191311733313117389+intron-Distal4.053086.85787HepG2CSTF2T
chr191310970813109780+intron-Distal3.413924.01234HepG2HNRNPL
chr191311503513115068+intron-Distal3.926466.16837K562AGGF1
chr191310697413107029+intron-Distal3.072255.55208K562EIF4G2
chr191310675513106841+intron-Distal,intron-Proximal4.558298.27535HepG2FAM120A
chr191311323413113317+intron-Distal4.774895.16513HepG2HNRNPM
chr191312233713122403+intron-Distal3.554684.46513HepG2NKRF
chr191311446513114506+intron-Distal5.289956.98111K562AGGF1
chr191310751813107599+intron-Distal3.036423.99763K562SLTM
chr191311255613112658+intron-Distal3.5056810.16757HepG2CSTF2T
chr191310697313107041+intron-Distal3.564414.01575K562NONO
chr191312233613122388+intron-Distal4.164673.70291HepG2FAM120A
chr191310750013107601+intron-Distal3.175744.55320K562NONO
chr191310714713107232+intron-Distal3.189605.71679HepG2FAM120A
chr191310718613107251+intron-Distal3.881303.70058K562CSTF2T
chr191312272913122824+intron-Distal4.370683.98553K562NONO
chr191311166913111724+intron-Distal4.388675.19780K562NONO
chr191319122113191329+intron-Distal3.917633.77875HepG2ILF3
chr191311936813119466+intron-Distal4.939645.43236K562PTBP1
chr191311352713113673+intron-Distal4.6453519.59954HepG2CSTF2T
chr191311412513114168+intron-Distal4.6834510.26984K562AGGF1
chr191312091113120968+intron-Distal3.815753.02711K562EWSR1
chr191311081013110852+intron-Distal3.922673.30336K562EWSR1
chr191312012613120163+intron-Distal4.321254.68055HepG2CSTF2T
chr191312283313122919+intron-Distal4.030153.02731K562AKAP8L
chr191314974013149859+intron-Distal4.239164.58989K562NONO
chr191311667413116719+intron-Distal3.073873.23466HepG2CSTF2T
chr191311338713113462+intron-Distal4.2761313.84165HepG2CSTF2T
chr191310716613107262+intron-Distal3.6420210.09869HepG2CSTF2T
chr191311221213112303+intron-Distal3.999815.51953HepG2SFPQ
chr191310810513108225+intron-Distal3.824973.08314K562TARDBP
chr191310801313108061+intron-Distal3.581428.15854HepG2CSTF2T
chr191311356713113667+intron-Distal3.338643.81633HepG2FAM120A
chr191310812213108172+intron-Distal3.452846.58651HepG2CSTF2T
chr191313313213133220+intron-Distal3.290553.46580HepG2CSTF2T
chr191310744813107483+intron-Distal4.264289.56617HepG2CSTF2T
chr191311195213112012+intron-Distal4.3183310.05876HepG2CSTF2T
chr191314033213140421+intron-Distal4.065145.28337HepG2HNRNPM
chr191311394213114024+intron-Distal3.454103.64175HepG2AGGF1
chr191312282613122919+intron-Distal3.389459.92993HepG2CSTF2T
chr191310675713106847+intron-Distal,intron-Proximal6.2840121.32615HepG2CSTF2T
chr191311303313113113+intron-Distal4.698529.67229HepG2PCBP2
chr191310877413108840+intron-Distal3.729968.38969HepG2CSTF2T
chr191312339813123452+intron-Distal3.386113.49516HepG2CSTF2T
chr191311392413114004+intron-Distal3.400546.89152K562HNRNPL
chr191317755613177645+intron-Distal4.440734.19739K562EIF4G2
chr191312069813120743+intron-Distal3.335653.48399HepG2CSTF2T
chr191311073313110800+intron-Distal4.309904.48497K562NONO
chr191311339513113471+intron-Distal4.571484.69805HepG2NKRF
chr191311315313113261+intron-Distal4.4767610.05876HepG2CSTF2T
chr191311446913114483+intron-Distal3.011863.40713K562HNRNPL
chr191310721313107272+intron-Distal4.244004.14056K562EWSR1
chr191312191813121971+intron-Distal3.565624.60046HepG2CSTF2T
chr191310768513107722+intron-Distal3.974416.99039HepG2CSTF2T
chr191311410513114201+intron-Distal3.803697.74378K562HNRNPL
chr191310862413108680+intron-Distal4.245418.80803HepG2CSTF2T
chr191311080513110860+intron-Distal3.302924.88713HepG2CSTF2T
chr191311285213112956+intron-Distal4.386118.29908HepG2CSTF2T
chr191310673113106839+intron-Distal,intron-Proximal4.022594.69941K562AKAP8L
chr191310811613108189+intron-Distal4.143373.60235HepG2HNRNPM
chr191310708313107159+intron-Distal4.661695.27179K562EWSR1
chr191311090913110950+intron-Distal3.242443.46580HepG2CSTF2T
chr191310913113109175+intron-Distal4.214823.41738HepG2PTBP1
chr191310696413107021+intron-Distal3.985423.77743K562DDX52
chr191310698513107050+intron-Distal3.122803.25653K562CSTF2T
chr191311409313114185+intron-Distal3.985458.19245HepG2HNRNPL
chr191310873113108774+intron-Distal3.518356.59225HepG2CSTF2T
chr191312269213122774+intron-Distal3.126756.52125HepG2CSTF2T
chr191310897113109062+intron-Distal4.5520411.36083HepG2PTBP1
chr191311414213114217+intron-Distal4.271263.85108HepG2GTF2F1
chr191310707913107127+intron-Distal5.111257.07160K562EIF4G2
chr191313028113130374+intron-Distal4.297873.74583HepG2PTBP1
chr191311220413112253+intron-Distal3.909227.23771HepG2CSTF2T
chr191310732513107376+intron-Distal3.677748.15854HepG2CSTF2T
chr191311696213117002+intron-Distal3.438243.96999HepG2CSTF2T
chr191310678713106827+intron-Distal4.409423.17679K562DDX52
chr191311341213113470+intron-Distal3.827093.08079HepG2AGGF1
chr191310900713109057+intron-Distal4.266965.16181K562PTBP1
chr191310697813107045+intron-Distal5.452455.19823K562PHF6
chr191310709213107147+intron-Distal3.610213.79474HepG2FAM120A
chr191312270813122785+intron-Distal4.193453.38470HepG2NKRF
chr191310748313107558+intron-Distal3.4625915.13810HepG2CSTF2T
chr191312091613120960+intron-Distal3.455354.35339HepG2CSTF2T
chr191310697613107027+intron-Distal4.210466.90654K562GEMIN5
chr191310751613107579+intron-Distal4.573255.84224K562EWSR1
chr191311398113114055+intron-Distal3.848425.63547HepG2HNRNPL
chr191310751113107566+intron-Distal3.608485.05880HepG2NKRF
chr191310716013107237+intron-Distal3.188985.39783HepG2NKRF
chr191310671013106757+intron-Proximal3.903439.96838HepG2CSTF2T
chr191318486713184919+intron-Proximal5.109975.83705HepG2RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NFIX is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NFIX is not available on ENCORE database.

  • 92 RBPs can affect the levels of NFIX.  








The Knockdown/knockout RNA-Seq assay for NFIX is not available on ENCORE database.





92 RBPs can affect the gene expression of NFIX :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NFIXENSG00000008441.12587.18060310.194400.920505.461904.12580HepG2ADAR
NFIXENSG00000008441.12230.86450462.71870-1.003107.524606.69200HepG2AKAP1
NFIXENSG00000008441.12732.92720554.571900.402203.868002.97370HepG2AKAP8L
NFIXENSG00000008441.12441.23740681.23230-0.626607.533606.49130HepG2AUH
NFIXENSG00000008441.12240.23370364.83470-0.602802.568101.66780HepG2BCCIP
NFIXENSG00000008441.12224.05970316.94280-0.500302.239501.43060HepG2BCLAF1
NFIXENSG00000008441.12422.356701085.71590-1.3621025.7440024.22480HepG2BOP1
NFIXENSG00000008441.12354.22250606.89670-0.776808.078306.85930HepG2CALR
NFIXENSG00000008441.12650.19980945.83290-0.540703.440802.34310HepG2CCAR1
NFIXENSG00000008441.12191.66940320.52580-0.741803.339902.49260HepG2CNOT7
NFIXENSG00000008441.12351.64690996.75730-1.5031027.0650025.20060HepG2CPSF6
NFIXENSG00000008441.12669.27550450.364600.571406.409605.50880HepG2CELF1
NFIXENSG00000008441.12229.78690443.18900-0.947607.491006.50660HepG2DDX3X
NFIXENSG00000008441.12180.60160358.74480-0.990104.832003.84370HepG2DDX55
NFIXENSG00000008441.12573.14270421.038100.444802.401301.53940HepG2EEF2
NFIXENSG00000008441.12202.86420315.88190-0.638902.923801.78130HepG2AGO1
NFIXENSG00000008441.12436.13690323.887800.429202.654701.59640HepG2EIF3G
NFIXENSG00000008441.12269.12070404.38240-0.587503.219502.53080HepG2EIF4A3
NFIXENSG00000008441.12815.88740393.853601.050607.400606.30640HepG2EIF4B
NFIXENSG00000008441.12572.44010782.19450-0.450404.775804.02480HepG2ETF1
NFIXENSG00000008441.12232.29340326.80870-0.492502.546101.44430HepG2FASTKD2
NFIXENSG00000008441.12172.81260298.55710-0.788803.501102.08220HepG2FKBP4
NFIXENSG00000008441.12610.90490998.44300-0.708702.760001.74600HepG2FTO
NFIXENSG00000008441.12596.36360408.211800.546803.569002.78950HepG2FXR1
NFIXENSG00000008441.12721.065701129.93210-0.648005.736704.83770HepG2GPKOW
NFIXENSG00000008441.12369.53040526.97710-0.512004.937003.67100HepG2HDGF
NFIXENSG00000008441.12502.98370315.314000.673605.155604.31130HepG2HNRNPA1
NFIXENSG00000008441.12242.97040350.75100-0.529702.029001.42520HepG2HNRNPC
NFIXENSG00000008441.12714.38330556.317900.360702.873202.14390HepG2HNRNPF
NFIXENSG00000008441.12509.07740383.588000.408202.033501.42860HepG2HNRNPK
NFIXENSG00000008441.12861.253701078.31230-0.324301.969501.43030HepG2HNRNPLL
NFIXENSG00000008441.12156.25860348.43040-1.156908.406207.39040HepG2HNRNPU
NFIXENSG00000008441.12709.53150547.808300.373102.480701.79410HepG2IGF2BP1
NFIXENSG00000008441.12535.90250387.082100.469202.187401.30790HepG2KHSRP
NFIXENSG00000008441.121521.42890999.169600.606504.726703.63350HepG2LARP4
NFIXENSG00000008441.12212.39840408.35530-0.943105.812404.87240HepG2MAGOH
NFIXENSG00000008441.12201.11140357.66830-0.830603.781402.55770HepG2METAP2
NFIXENSG00000008441.12320.09580806.59080-1.3333023.3093021.27970HepG2MSI2
NFIXENSG00000008441.12764.667301099.67270-0.524202.950101.94590HepG2MTPAP
NFIXENSG00000008441.12517.04100677.30470-0.389502.694401.49500HepG2NAA15
NFIXENSG00000008441.12569.15510420.251900.437502.290001.71160HepG2NCBP2
NFIXENSG00000008441.12424.34350292.998100.534202.087101.33270HepG2PABPC1
NFIXENSG00000008441.12704.74970383.326900.878408.495507.52770HepG2PCBP1
NFIXENSG00000008441.12386.95810282.634600.453102.698501.48200HepG2PKM
NFIXENSG00000008441.12475.06270310.768100.612205.090904.12000HepG2PPIL4
NFIXENSG00000008441.12507.39130652.05060-0.361903.152202.33170HepG2PRPF4
NFIXENSG00000008441.12352.95230458.35630-0.377001.981301.46560HepG2PUF60
NFIXENSG00000008441.12339.02740486.21430-0.520203.701502.93100HepG2PUM2
NFIXENSG00000008441.12188.31680422.39130-1.165409.402808.35060HepG2QKI
NFIXENSG00000008441.12399.98580653.75970-0.708806.504405.79110HepG2RBM22
NFIXENSG00000008441.12552.36270434.098800.347502.482601.96530HepG2NELFE
NFIXENSG00000008441.12602.26160404.364100.574606.066605.20280HepG2RECQL
NFIXENSG00000008441.12475.05190599.38070-0.335402.099001.49420HepG2RPLP0
NFIXENSG00000008441.12398.54530273.542400.542902.136001.43760HepG2RRP9
NFIXENSG00000008441.12501.89030333.751500.588503.825102.71800HepG2SERBP1
NFIXENSG00000008441.12345.496701187.58940-1.7813023.4228021.22840HepG2SNRNP70
NFIXENSG00000008441.12391.67000738.37960-0.9147015.7513014.81320HepG2SRFBP1
NFIXENSG00000008441.12209.35360423.86980-1.017707.994607.28760HepG2SRSF1
NFIXENSG00000008441.12268.71580452.57340-0.752107.438506.47940HepG2SRSF5
NFIXENSG00000008441.12529.47810344.865800.618406.366505.59040HepG2SRSF9
NFIXENSG00000008441.12430.27710641.05700-0.575206.740506.00680HepG2SSB
NFIXENSG00000008441.12373.21850514.68930-0.463703.915603.19850HepG2SUCLG1
NFIXENSG00000008441.12462.65470687.02410-0.570403.462301.96620HepG2SUGP2
NFIXENSG00000008441.12211.16440381.07170-0.851706.297405.51040HepG2TAF15
NFIXENSG00000008441.12852.183101050.94100-0.302401.952501.32990HepG2TARDBP
NFIXENSG00000008441.12655.12080341.597200.9394012.1266011.06810HepG2TRIM56
NFIXENSG00000008441.12641.38140852.55000-0.410602.748602.12150HepG2U2AF1
NFIXENSG00000008441.12451.60230752.96400-0.7375011.6214010.36900HepG2UPF1
NFIXENSG00000008441.12207.54300326.81510-0.655103.191302.11190HepG2UPF2
NFIXENSG00000008441.12548.26640773.94190-0.497305.434504.01030HepG2UTP18
NFIXENSG00000008441.12458.36770726.95720-0.665408.223507.28000HepG2UTP3
NFIXENSG00000008441.12524.18580643.50310-0.295902.385001.75610HepG2ZC3H8
NFIXENSG00000008441.12514.36010828.11630-0.6871012.0853011.14320HepG2ZNF622
NFIXENSG00000008441.12322.78900507.06340-0.651606.192705.39600K562AGGF1
NFIXENSG00000008441.12348.92640261.306200.417102.252301.38660K562BCLAF1
NFIXENSG00000008441.12678.46240509.260500.413802.474501.65210K562BOP1
NFIXENSG00000008441.12510.69720285.768900.837507.754005.75090K562CCAR1
NFIXENSG00000008441.12962.34930796.642800.272502.309401.41860K562CELF1
NFIXENSG00000008441.12708.03930532.132900.411903.342602.00900K562DDX21
NFIXENSG00000008441.12906.82410758.179800.258202.074101.49680K562DDX47
NFIXENSG00000008441.12575.98140319.942000.848108.137405.68150K562DHX30
NFIXENSG00000008441.12571.17090290.666700.974505.309803.87820K562EIF3A
NFIXENSG00000008441.12269.14070166.011700.697004.173203.20360K562EIF3G
NFIXENSG00000008441.12365.06620263.998500.467502.526701.74280K562EIF4A3
NFIXENSG00000008441.12355.85390237.730200.581904.230102.74780K562EIF4B
NFIXENSG00000008441.12975.49240648.087600.589808.011106.43130K562EIF4G2
NFIXENSG00000008441.12468.33930274.544600.770407.575206.64030K562FXR1
NFIXENSG00000008441.12708.84070516.995200.455203.315002.44770K562GPKOW
NFIXENSG00000008441.12412.20720305.481700.432202.291501.74090K562HNRNPC
NFIXENSG00000008441.12388.22350272.852500.508702.942701.76410K562HNRNPF
NFIXENSG00000008441.12373.29490232.155400.685105.140003.42300K562IGF2BP3
NFIXENSG00000008441.12345.56420239.776900.527203.130102.23480K562MAGOH
NFIXENSG00000008441.12320.54670239.264600.421802.195701.38330K562MATR3
NFIXENSG00000008441.12423.30660232.971000.861508.484707.36200K562PTBP1
NFIXENSG00000008441.12297.33210523.27730-0.815506.562505.76710K562PUS1
NFIXENSG00000008441.12329.00020223.298600.559003.268102.34810K562RBM22
NFIXENSG00000008441.12728.67250479.106200.604803.791902.51790K562SAFB
NFIXENSG00000008441.12503.23620641.54080-0.350302.805701.98620K562SF3A3
NFIXENSG00000008441.12208.62580143.388300.540902.467801.66220K562SF3B4
NFIXENSG00000008441.12451.20600314.702700.519703.422602.00170K562SLBP
NFIXENSG00000008441.12341.13170236.971900.525502.692601.68650K562SRFBP1
NFIXENSG00000008441.12394.42370230.739600.773405.483003.90770K562SRSF4
NFIXENSG00000008441.12605.48520474.909700.350302.499001.39080K562SRSF7
NFIXENSG00000008441.12407.12950231.123000.816705.599204.57270K562TARDBP
NFIXENSG00000008441.12334.00560222.955000.583003.664502.70320K562TIA1
NFIXENSG00000008441.12515.20370263.448400.967504.222303.04490K562TIAL1
NFIXENSG00000008441.12477.79830279.965200.771103.910402.74600K562TRIM56
NFIXENSG00000008441.12827.14630613.429600.431105.018703.90980K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NFIX is not available on ENCORE database.





5 RBPs can affect the splicing of NFIX :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENFIXENSG00000008441.12chr19+131894261318954913186348131864851319249313192669-0.163000.001600.03046excludedHepG2U2AF1
SENFIXENSG00000008441.12chr19+1319880213198950131924931319266913201112132012040.325000.000270.01385includedHepG2HNRNPC
SENFIXENSG00000008441.12chr19+1319880213198950131924931319266913201112132012040.355000.000050.00147includedK562HNRNPC
MXENFIXENSG00000008441.12chr19+13186348131865581318942613189549131847191318484013192493131926690.222000.001340.022431includedK562DROSHA
MXENFIXENSG00000008441.12chr19+1318634813186485131894261318954913184719131848401319249313192669-0.239000.000180.066412includedK562DDX21
MXENFIXENSG00000008441.12chr19+13186348131864851318942613189549131847191318484013192493131926690.163000.003820.053831includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NFIX is not avaliable on ENCORE database.