SEMA3F

General Information

Gene Name       : SEMA3F
Gene ID             : ENSG00000001617.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SEMA3F)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SEMA3FENSG00000001617.110.000.060.03ENCSR000AEF
HepG2SEMA3FENSG00000001617.1119.417.8413.62ENCSR985KAT
K562SEMA3FENSG00000001617.111.220.991.10ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SEMA3F is not avaliable on ENCORE database.



Proteins bound to RNA
  • SEMA3F RNA is bound by 9 proteins.  







eCLIP assay for SEMA3F is not avaliable on ENCORE database.





9 proteins are bound to SEMA3F RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr35022610250226190+3'-UTR3.604056.83466HepG2UPF1
chr35022610250226209+3'-UTR4.513215.04923HepG2AKAP1
chr35022564750225724+3'-UTR4.164453.43895HepG2LARP4
chr35022628050226351+3'-UTR4.704765.64948HepG2UPF1
chr35019282650192937+5'-UTR,intron-Distal5.4089323.17024HepG2DDX3X
chr35019255450192657+5'-UTR,intron-Proximal4.2615415.56330HepG2DDX3X
chr35019293750192992+5'-UTR,intron-Distal4.145457.63030HepG2DDX3X
chr35019267650192740+5'-UTR,intron-Distal,intron-Proximal5.864437.49422HepG2DDX3X
chr35019277150192826+5'-UTR,intron-Distal3.894548.43072HepG2DDX3X
chr35022351650223727+CDS,intron-Distal,intron-Proximal3.436334.77785K562RBFOX2
chr35022531350225472+CDS3.724014.24460HepG2IGF2BP1
chr35022353450223638+intron-Distal,intron-Proximal4.086556.81262HepG2RBFOX2
chr35021952150219600+intron-Distal3.406003.64762HepG2QKI
chr35019770550197766+intron-Distal3.242443.46580HepG2CSTF2T
chr35022363850223700+intron-Proximal3.715415.55843HepG2RBFOX2
chr35021414050214194+intron-Proximal4.103919.40935HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SEMA3F is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SEMA3F is not available on ENCORE database.

  • 88 RBPs can affect the levels of SEMA3F.  








The Knockdown/knockout RNA-Seq assay for SEMA3F is not available on ENCORE database.





88 RBPs can affect the gene expression of SEMA3F :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SEMA3FENSG00000001617.7593.84800803.89550-0.436902.512601.61380HepG2ABCF1
SEMA3FENSG00000001617.7394.39220511.19270-0.374202.919402.29740HepG2ACO1
SEMA3FENSG00000001617.7381.31900600.57910-0.655402.331601.83870HepG2AKAP1
SEMA3FENSG00000001617.7979.27870605.725500.693005.986504.48710HepG2AKAP8
SEMA3FENSG00000001617.7821.08490513.557400.6769010.050508.70140HepG2AKAP8L
SEMA3FENSG00000001617.71152.55210915.603400.331903.810303.02830HepG2AUH
SEMA3FENSG00000001617.7513.20590644.53130-0.328701.845501.34820HepG2BOP1
SEMA3FENSG00000001617.7306.69360451.13820-0.556803.857502.96950HepG2CALR
SEMA3FENSG00000001617.7223.87080472.08810-1.076405.960804.85500HepG2CIRBP
SEMA3FENSG00000001617.7684.21830402.700500.764603.952403.03220HepG2CNOT7
SEMA3FENSG00000001617.7484.27640661.97640-0.450903.345102.12720HepG2CPSF7
SEMA3FENSG00000001617.7340.75250230.329800.564902.699001.63460HepG2CSTF2
SEMA3FENSG00000001617.7565.08120448.628400.332802.446401.83440HepG2CELF1
SEMA3FENSG00000001617.7341.58610472.75950-0.468904.318003.30410HepG2DDX19B
SEMA3FENSG00000001617.7129.81550315.47880-1.2811011.621309.79770HepG2DDX24
SEMA3FENSG00000001617.7222.30360343.12320-0.626203.060901.71050HepG2DDX27
SEMA3FENSG00000001617.7750.58500575.211800.383801.909301.37990HepG2DDX3X
SEMA3FENSG00000001617.7554.94250848.84990-0.613206.050804.18230HepG2DDX47
SEMA3FENSG00000001617.7354.35690626.89490-0.823008.116006.47950HepG2DDX5
SEMA3FENSG00000001617.7816.26930494.348500.723404.287303.53180HepG2DDX6
SEMA3FENSG00000001617.7182.48740268.92850-0.559402.710801.73560HepG2DHX30
SEMA3FENSG00000001617.7303.35160489.06140-0.689006.872705.89680HepG2DKC1
SEMA3FENSG00000001617.7570.11820278.819001.0318012.8715011.44270HepG2DNAJC21
SEMA3FENSG00000001617.7385.15680276.390100.478603.731002.99500HepG2DNAJC2
SEMA3FENSG00000001617.7192.46090296.83960-0.625102.860801.73380HepG2AGO1
SEMA3FENSG00000001617.7213.90420331.78890-0.633303.613602.58810HepG2EIF3D
SEMA3FENSG00000001617.7217.39130524.82190-1.271505.727104.80830HepG2EIF4A3
SEMA3FENSG00000001617.7778.96220511.198300.607602.093101.49100HepG2EIF4B
SEMA3FENSG00000001617.7506.09310696.34530-0.460403.276402.09180HepG2ESF1
SEMA3FENSG00000001617.71570.936901051.254400.5794010.221709.18500HepG2ETF1
SEMA3FENSG00000001617.71059.84320811.731000.384702.214501.52170HepG2FIP1L1
SEMA3FENSG00000001617.7177.03480305.27150-0.786103.653902.20460HepG2FKBP4
SEMA3FENSG00000001617.7803.84490491.344600.710106.072505.10370HepG2G3BP1
SEMA3FENSG00000001617.7677.62770488.015700.473505.113703.82730HepG2HDGF
SEMA3FENSG00000001617.7756.61160619.783100.287702.459401.78060HepG2HNRNPF
SEMA3FENSG00000001617.7414.61690640.12280-0.626604.729603.92890HepG2HNRNPLL
SEMA3FENSG00000001617.7615.75040311.046300.9851012.8584011.62910HepG2HNRNPU
SEMA3FENSG00000001617.7593.56520384.217900.627402.906201.67930HepG2KHDRBS1
SEMA3FENSG00000001617.7185.67670530.04350-1.513309.357608.16610HepG2MAGOH
SEMA3FENSG00000001617.7411.54660551.62570-0.422602.719601.51290HepG2NAA15
SEMA3FENSG00000001617.7767.94940478.294100.683008.726307.39740HepG2NOL12
SEMA3FENSG00000001617.7334.70380567.58610-0.762006.328905.22400HepG2NSUN2
SEMA3FENSG00000001617.7426.34480307.868800.469603.451902.51550HepG2PARN
SEMA3FENSG00000001617.7356.43820514.23270-0.528804.733003.97450HepG2PCBP1
SEMA3FENSG00000001617.7400.24500274.387700.544603.677802.25540HepG2PKM
SEMA3FENSG00000001617.7366.28980277.426500.400802.390001.70060HepG2PPIL4
SEMA3FENSG00000001617.7457.61630282.780300.694403.860702.92630HepG2PRPF8
SEMA3FENSG00000001617.7753.17210456.584900.722008.020407.07650HepG2PUF60
SEMA3FENSG00000001617.71013.52600484.336001.0652017.7099016.10500HepG2PUM2
SEMA3FENSG00000001617.71187.23230878.650100.434105.257104.60000HepG2RBM22
SEMA3FENSG00000001617.7679.74980322.881701.0739014.3520013.09630HepG2RPS19
SEMA3FENSG00000001617.7504.35510354.448000.508802.682201.89360HepG2RPS2
SEMA3FENSG00000001617.7625.54460279.710301.161106.811005.63750HepG2RRP9
SEMA3FENSG00000001617.7371.16180276.994000.422102.767402.12290HepG2SAFB2
SEMA3FENSG00000001617.7722.61010541.591900.415902.148501.55350HepG2SF3A3
SEMA3FENSG00000001617.7366.10880633.59920-0.791307.513606.40080HepG2SF3B1
SEMA3FENSG00000001617.7693.31470333.772701.054502.954501.44470HepG2SFPQ
SEMA3FENSG00000001617.7599.50410323.010800.8921014.2538012.97080HepG2SMN1
SEMA3FENSG00000001617.7953.25030704.988800.435202.041301.37440HepG2SNRNP70
SEMA3FENSG00000001617.7535.12420992.39590-0.8910019.3125018.30180HepG2SRFBP1
SEMA3FENSG00000001617.7889.36600450.827100.9801020.3248018.83940HepG2SRSF5
SEMA3FENSG00000001617.7314.99270861.62230-1.4517038.0699036.68080HepG2SSB
SEMA3FENSG00000001617.7881.00400512.700900.7809014.5672013.32260HepG2SUCLG1
SEMA3FENSG00000001617.7465.24200665.09210-0.515602.960401.58650HepG2SUGP2
SEMA3FENSG00000001617.7210.40440511.13500-1.2805016.1099014.92360HepG2TAF15
SEMA3FENSG00000001617.7375.09240244.680600.616203.035401.99480HepG2TFIP11
SEMA3FENSG00000001617.7710.46060302.198301.2332021.3718020.22440HepG2TIAL1
SEMA3FENSG00000001617.7474.06810304.944000.636406.345205.55400HepG2TRIM56
SEMA3FENSG00000001617.7728.23470446.085900.707007.806506.22110HepG2TUFM
SEMA3FENSG00000001617.7356.40540694.35680-0.9622010.269709.04240HepG2U2AF1
SEMA3FENSG00000001617.71003.85070357.192601.490705.934404.43930HepG2U2AF2
SEMA3FENSG00000001617.7446.52660215.638901.050009.123107.74400HepG2UCHL5
SEMA3FENSG00000001617.7340.95640480.30950-0.494403.377502.61860HepG2UPF1
SEMA3FENSG00000001617.7219.22940463.71950-1.0808013.5336012.35830HepG2UTP3
SEMA3FENSG00000001617.7609.79530324.469000.910103.588702.38190HepG2XRCC6
SEMA3FENSG00000001617.7171.35840106.531600.685603.013602.33090K562AKAP8L
SEMA3FENSG00000001617.778.60900140.99070-0.842802.468601.30250K562APOBEC3C
SEMA3FENSG00000001617.756.30740135.73050-1.269306.444205.50780K562DDX47
SEMA3FENSG00000001617.739.1760080.16780-1.033102.733502.13170K562FXR1
SEMA3FENSG00000001617.75.5427025.51400-2.202602.929002.19890K562G3BP2
SEMA3FENSG00000001617.7172.6060097.253700.827603.074702.28040K562GRSF1
SEMA3FENSG00000001617.7197.2072092.272601.095605.821804.98650K562HNRNPC
SEMA3FENSG00000001617.796.9596050.083800.952903.270202.25800K562MATR3
SEMA3FENSG00000001617.7229.91660122.452300.908802.547601.74970K562PCBP3
SEMA3FENSG00000001617.7169.4745093.917400.851503.913802.95500K562POLR2G
SEMA3FENSG00000001617.7152.4351082.747700.881303.147102.17360K562PSIP1
SEMA3FENSG00000001617.7100.4108048.774501.041603.928903.15090K562PTBP1
SEMA3FENSG00000001617.7103.52760185.39780-0.840603.758802.49700K562PUM1
SEMA3FENSG00000001617.7104.2682046.729501.157802.791601.94750K562RBM22
SEMA3FENSG00000001617.7157.8533072.644601.119603.440401.92630K562SFPQ
SEMA3FENSG00000001617.746.4988094.21220-1.018703.392902.48470K562SYNCRIP
SEMA3FENSG00000001617.791.5343046.675400.971602.977402.12440K562TIA1
SEMA3FENSG00000001617.78.8286025.54540-1.532801.994701.31330K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SEMA3F is not available on ENCORE database.





3 RBPs can affect the splicing of SEMA3F :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESEMA3FENSG00000001617.7chr3+5021252850212621502116635021178350214200502142940.258000.000070.00746includedHepG2RBM22
SESEMA3FENSG00000001617.7chr3+5021252850212621502116635021178350214200502142940.352000.004000.04437includedHepG2U2AF2
MXESEMA3FENSG00000001617.7chr3+50212528502126215021420050214294502116635021178350219716502198360.158000.000680.049351includedHepG2SRSF7

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SEMA3F is not avaliable on ENCORE database.