GGNBP2

General Information

Gene Name       : GGNBP2
Gene ID             : ENSG00000278311.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GGNBP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GGNBP2ENSG00000278311.454.0249.1751.59ENCSR000AEF
HepG2GGNBP2ENSG00000278311.437.7953.0945.44ENCSR985KAT
K562GGNBP2ENSG00000278311.456.9660.3858.67ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GGNBP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GGNBP2 RNA is bound by 18 proteins.  







eCLIP assay for GGNBP2 is not avaliable on ENCORE database.





18 proteins are bound to GGNBP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr173490329034903411+3'-UTR,intron-Distal4.174614.50052K562HNRNPL
chr173494594434946109+3'-UTR3.034894.33162K562TIA1
chr173490152234901604+5'-UTR,CDS3.266593.63043HepG2GRWD1
chr173493582434935907+CDS,intron-Proximal3.710193.54718K562PRPF8
chr173493568134935810+CDS5.097818.64103HepG2GRWD1
chr173494174134941801+CDS3.400536.92192K562UCHL5
chr173494359634943676+CDS,intron-Proximal4.707594.28644K562PUM1
chr173494342734943484+CDS4.625565.59408HepG2GRWD1
chr173494342334943549+CDS,intron-Proximal3.7419416.95507K562ZNF622
chr173493567534935785+CDS3.720588.11704K562UCHL5
chr173491066434910739+CDS3.597848.19964HepG2BCLAF1
chr173493440134934466+CDS,intron-Proximal3.784763.77215K562U2AF2
chr173494247834942517+CDS,intron-Proximal3.193016.28688K562UCHL5
chr173493789534937971+CDS,intron-Proximal3.253204.89942HepG2GRWD1
chr173494342534943513+CDS,intron-Proximal5.2358217.69334K562UCHL5
chr173492350934923623+CDS,intron-Proximal3.3314010.70004HepG2BCLAF1
chr173490164634901706+CDS,intron-Proximal3.696576.34662HepG2PRPF8
chr173493569434935833+CDS3.111049.85730K562ZNF622
chr173493449734934558+CDS4.217503.81597K562RBM15
chr173494252134942604+CDS3.8356715.30554K562ZNF622
chr173493450434934562+CDS3.583534.93175HepG2GRWD1
chr173494260434942632+CDS,intron-Proximal3.650358.01252K562ZNF622
chr173494342634943544+CDS,intron-Proximal3.074976.13500K562ZNF800
chr173494260034942633+CDS,intron-Proximal5.8918913.02740HepG2BCLAF1
chr173494342534943529+CDS,intron-Proximal4.2670113.66456HepG2BCLAF1
chr173494252534942592+CDS3.6541310.19182K562UCHL5
chr173494343334943527+CDS3.108864.26255K562MTPAP
chr173494342634943612+CDS,intron-Proximal3.876507.32550HepG2ZNF800
chr173494259234942629+CDS,intron-Proximal5.7383913.18100K562UCHL5
chr173494560534945701+CDS,intron-Proximal3.588803.55754HepG2U2AF2
chr173493454234934626+CDS,intron-Proximal3.167214.42661HepG2PPIG
chr173493451234934546+CDS4.665304.78529HepG2BCLAF1
chr173493583434935864+CDS,intron-Proximal4.211508.78144HepG2PRPF8
chr173494353534943590+CDS3.283794.24070HepG2GRWD1
chr173494182334941876+CDS3.805324.49887K562ZNF622
chr173494254234942624+CDS3.143213.13733K562CPSF6
chr173491661534916723+CDS,intron-Proximal3.5065611.19372HepG2BCLAF1
chr173494249834942611+CDS3.494603.62547K562MTPAP
chr173493458034934621+CDS,intron-Proximal3.528924.40383K562UCHL5
chr173494348434943535+CDS3.585935.74979HepG2GRWD1
chr173494252134942626+CDS4.034408.70622HepG2GRWD1
chr173491065834910741+CDS,intron-Proximal3.758645.52342HepG2PPIG
chr173493456334934630+CDS,intron-Proximal3.197544.08412K562RBM15
chr173494173834941797+CDS4.844335.94412K562ZNF622
chr173493788634937964+CDS5.0224022.48175K562ZNF622
chr173493790134937970+CDS,intron-Proximal3.8742517.05386K562UCHL5
chr173493444334934508+CDS3.197495.00751HepG2BCLAF1
chr173491069834910733+CDS3.531833.31745K562ZNF622
chr173494173234941792+CDS3.276506.19339HepG2BCLAF1
chr173494230234942378+CDS3.261076.64701HepG2BCLAF1
chr173493779334937970+CDS,intron-Proximal4.2420731.12035HepG2BCLAF1
chr173494228534942395+CDS4.2464317.56831K562ZNF622
chr173494230434942395+CDS4.3521018.75473K562UCHL5
chr173494179234941881+CDS,intron-Proximal4.161478.51432HepG2BCLAF1
chr173494253234942600+CDS6.4384420.50246HepG2BCLAF1
chr173494564434945755+CDS4.326244.28220HepG2GRWD1
chr173493439534934448+CDS,intron-Proximal3.919424.42765K562SF3B4
chr173494172834941741+CDS,intron-Proximal3.613885.03335K562UCHL5
chr173491668034916749+CDS,intron-Proximal3.488114.22621HepG2PRPF8
chr173494258934942632+CDS,intron-Proximal4.416006.00134K562GRWD1
chr173493789434937963+CDS3.433924.22460K562RBM15
chr173493548934935614+intron-Distal,intron-Proximal3.401217.08481K562KHSRP
chr173492952234929598+intron-Distal3.733069.74134K562KHSRP
chr173492037234920479+intron-Distal3.386173.92720K562TARDBP
chr173492809634928224+intron-Distal3.162985.62342K562KHSRP
chr173493429234934372+intron-Distal,intron-Proximal4.772386.23114K562TARDBP
chr173493425734934362+intron-Distal,intron-Proximal3.067358.34600K562KHSRP
chr173490109934901211+intron-Distal4.767806.06839HepG2PRPF4
chr173493436734934395+intron-Proximal4.569204.40745K562SF3B4
chr173491672034916765+intron-Proximal3.578403.02234K562KHSRP
chr173493586434935896+intron-Proximal4.575849.08333HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GGNBP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GGNBP2 is not available on ENCORE database.

  • 57 RBPs can affect the levels of GGNBP2.  








The Knockdown/knockout RNA-Seq assay for GGNBP2 is not available on ENCORE database.





57 RBPs can affect the gene expression of GGNBP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GGNBP2ENSG00000005955.81191.091001615.93430-0.440103.004002.45220HepG2AKAP1
GGNBP2ENSG00000005955.81190.44330921.201000.369802.121801.33010HepG2BCLAF1
GGNBP2ENSG00000005955.8929.161501293.11560-0.476904.447203.70940HepG2BOP1
GGNBP2ENSG00000005955.81146.633201665.06730-0.538203.071402.26270HepG2CNOT7
GGNBP2ENSG00000005955.8808.99400953.82790-0.237602.246201.64630HepG2DNAJC2
GGNBP2ENSG00000005955.81160.05580873.943400.408503.087602.13730HepG2EIF3D
GGNBP2ENSG00000005955.81258.87890985.870600.352603.175102.02440HepG2EIF3G
GGNBP2ENSG00000005955.82478.602002044.103100.278004.055903.35230HepG2ETF1
GGNBP2ENSG00000005955.81165.77170810.680200.524005.429504.33910HepG2FUBP3
GGNBP2ENSG00000005955.81634.168301322.182400.305501.858601.30760HepG2G3BP1
GGNBP2ENSG00000005955.81833.167301338.855700.453204.353603.49430HepG2HNRNPK
GGNBP2ENSG00000005955.81443.269801654.81350-0.197302.110701.51160HepG2HNRNPL
GGNBP2ENSG00000005955.8846.692501073.58770-0.342503.887803.18030HepG2HNRNPU
GGNBP2ENSG00000005955.81775.704601425.818100.316502.053201.48450HepG2MAGOH
GGNBP2ENSG00000005955.81500.963301801.41240-0.263202.378101.67220HepG2NOL12
GGNBP2ENSG00000005955.82353.944101521.788600.629203.732802.68900HepG2PABPC1
GGNBP2ENSG00000005955.81038.63120804.024300.369302.195101.47280HepG2PRPF8
GGNBP2ENSG00000005955.81297.827401719.63690-0.406003.995203.29390HepG2PUF60
GGNBP2ENSG00000005955.82020.477401233.369500.712003.659502.85140HepG2RAVER1
GGNBP2ENSG00000005955.81999.498001708.500300.226802.140801.67000HepG2RBM22
GGNBP2ENSG00000005955.81678.221401338.018900.326703.006602.30750HepG2RBM25
GGNBP2ENSG00000005955.82279.145801666.914800.451202.807302.12880HepG2SF3A3
GGNBP2ENSG00000005955.81669.192301417.240500.236002.519701.95140HepG2SF3B4
GGNBP2ENSG00000005955.81851.158101479.322300.323404.531403.96330HepG2SRSF1
GGNBP2ENSG00000005955.81618.787301203.533400.427507.421006.59640HepG2SRSF9
GGNBP2ENSG00000005955.82166.087901675.464700.370406.460405.73740HepG2SSB
GGNBP2ENSG00000005955.81642.231301930.98200-0.233702.735802.11710HepG2SUCLG1
GGNBP2ENSG00000005955.81469.941701037.698300.502303.609802.85300HepG2SUPV3L1
GGNBP2ENSG00000005955.81737.466501329.756100.385705.033404.31430HepG2TAF15
GGNBP2ENSG00000005955.81624.128901221.776100.410604.704903.62290HepG2TIA1
GGNBP2ENSG00000005955.8774.617701043.29640-0.429604.318403.72240HepG2TIAL1
GGNBP2ENSG00000005955.8892.744301052.50970-0.237502.166701.65550HepG2TRIM56
GGNBP2ENSG00000005955.81067.44120906.828700.235202.183601.57660HepG2ZC3H8
GGNBP2ENSG00000005955.81899.501301625.846700.224303.036302.47070HepG2ZNF622
GGNBP2ENSG00000005955.83384.491503014.568200.166901.958701.46600K562AGGF1
GGNBP2ENSG00000005955.84180.215403136.803500.414204.956904.07250K562AKAP8L
GGNBP2ENSG00000005955.84182.006003244.592100.366103.676403.01950K562AQR
GGNBP2ENSG00000005955.83839.844503291.278200.222302.540701.66750K562ATP5C1
GGNBP2ENSG00000005955.82558.624503117.58120-0.285103.882402.56370K562CPEB4
GGNBP2ENSG00000005955.86036.918505200.441200.215102.200401.33150K562CELF1
GGNBP2ENSG00000005955.85134.248103225.638400.6705019.2104017.64600K562DDX47
GGNBP2ENSG00000005955.81157.74840836.285600.469202.257501.35970K562EIF3A
GGNBP2ENSG00000005955.82300.847801802.046700.352402.816702.01370K562EIF3G
GGNBP2ENSG00000005955.83093.515002131.276200.537404.186703.27630K562G3BP2
GGNBP2ENSG00000005955.82679.905202153.574100.315303.997202.63360K562GLRX3
GGNBP2ENSG00000005955.82493.490203049.28930-0.290302.683901.93820K562GRSF1
GGNBP2ENSG00000005955.82504.909203037.64160-0.278202.243201.52350K562HSPD1
GGNBP2ENSG00000005955.81142.99710858.884600.412202.912801.37820K562ILF3
GGNBP2ENSG00000005955.84445.277603328.902200.417105.152703.95710K562KIF1C
GGNBP2ENSG00000005955.81834.728002494.41530-0.443105.400504.21210K562MAGOH
GGNBP2ENSG00000005955.83858.060702613.912700.561603.335502.34900K562NAA15
GGNBP2ENSG00000005955.82025.017602543.38150-0.328802.736301.91970K562PPIG
GGNBP2ENSG00000005955.81857.405401498.325900.309802.288801.60390K562PRPF8
GGNBP2ENSG00000005955.85449.464503110.786900.8087015.1264013.89800K562PUS1
GGNBP2ENSG00000005955.84160.525903031.044100.456908.579107.56150K562RBM15
GGNBP2ENSG00000005955.82367.262801526.223500.633206.613205.34110K562RPS19
GGNBP2ENSG00000005955.81495.146502048.90480-0.454603.552302.33810K562SRSF4
GGNBP2ENSG00000005955.81017.409101439.02700-0.500204.282303.09840K562TIAL1
GGNBP2ENSG00000005955.82770.846402133.231600.377204.758503.70900K562U2AF2
GGNBP2ENSG00000005955.82738.244702282.502300.262502.341101.53500K562WDR3
GGNBP2ENSG00000005955.82892.753202373.514700.285304.891303.79510K562WDR43
GGNBP2ENSG00000005955.84452.032703654.811100.284602.634401.79630K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GGNBP2 is not available on ENCORE database.





12 RBPs can affect the splicing of GGNBP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGGNBP2ENSG00000005955.8chr17+349309243493116734923538349236153493441234934616-0.051000.000390.01466excludedHepG2SF3A3
A5SSGGNBP2ENSG00000005955.8chr17+349344123493462234934412349346163493567434935849-0.140000.000660.07234shorterHepG2TAF15
A5SSGGNBP2ENSG00000005955.8chr17+3493441234934622349344123493461634935674349358490.196000.000300.03107longerHepG2RBM22
A5SSGGNBP2ENSG00000005955.8chr17+3493441234934622349344123493461634935674349358490.196000.000020.00371longerK562PRPF8
A5SSGGNBP2ENSG00000005955.8chr17+349344123493462234934412349346163493567434935849-0.087000.000140.03259shorterK562SF3B1
RIGGNBP2ENSG00000005955.8chr17+3493441234935849349344123493462234935674349358490.458000.003680.09067includedHepG2TIA1
RIGGNBP2ENSG00000005955.8chr17+3493441234935849349344123493461634935674349358490.124000.000020.00053includedK562PRPF8
RIGGNBP2ENSG00000005955.8chr17+3493441234935849349344123493461634935674349358490.129000.003620.03881includedHepG2QKI
RIGGNBP2ENSG00000005955.8chr17+3493441234935849349344123493461634935674349358490.065000.004190.07153includedK562RBM22
RIGGNBP2ENSG00000005955.8chr17+3493441234935849349344123493461634935674349358490.055000.004170.02439includedK562AQR
MXEGGNBP2ENSG00000005955.8chr17+34901467349016663491066034910741349007363490094634912922349131760.281000.000010.002561includedHepG2BCCIP
MXEGGNBP2ENSG00000005955.8chr17+34901467349016663491066034910741349007363490094634912922349131760.347000.000000.000121includedHepG2XRN2
MXEGGNBP2ENSG00000005955.8chr17+34901467349016663491066034910741349007363490094634912922349131760.345000.000140.005341includedHepG2DDX55
MXEGGNBP2ENSG00000005955.8chr17+34901467349016663491066034910741349007363490094634912922349131760.230000.000100.005651includedHepG2SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GGNBP2 is not avaliable on ENCORE database.