PRPF4

General Information

Gene Name       : PRPF4
Gene ID             : ENSG00000136875.12
Essential Gene : Yes

Functions

Localization(RBPImage: PRPF4)

Domains (AlphaFold: PRPF4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRPF4ENSG00000136875.1231.5229.5830.55ENCSR000AEF
HepG2PRPF4ENSG00000136875.1230.1737.3433.76ENCSR985KAT
K562PRPF4ENSG00000136875.1232.2633.4832.87ENCSR000AEO

Assays

3 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 752ENCSR977OXGPRPF4HepG2ReleasedENCAB624FBHENCSR367ACZ  
knockdown followed by RNA-seq PRPF4-BGKLV38-K562ENCSR363QIAPRPF4K562ReleasedENCSR260BQC   shRNAKD% = 71.0,63.1
knockdown followed by RNA-seq PRPF4-BGHLV37-HepG2ENCSR466NRWPRPF4HepG2ReleasedENCSR093ERJ   shRNAKD% = 51.0,53.8






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
PRPF4752HepG2ENCSR977OXGENCSR367ACZENCAB624FBHRN093PW1ReleasedENCODE4


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
PRPF4ENCAB624FBHRN093PW1Released, ENCODE3Released, ENCODE3BGHLV37-41, Released, ENCODE3BGKLV38-63, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
PRPF4K562shRNABGKLV36-41,BGKLV36-42BGKLV36-1,BGKLV36-232.8,26.9NotSatisfiedENCODE3
PRPF4K562shRNABGKLV38-61,BGKLV38-62BGKLV38-1,BGKLV38-20.2,16.9NotSatisfiedENCODE3
PRPF4K562shRNAENCSR363QIAENCSR260BQCPRPF4-BGKLV38-63C,PRPF4-BGKLV38-64CNT-BGKLV38-1C,NT-BGKLV38-2C71.0,63.1ReleasedENCODE4
PRPF4K562shRNABGKLV38-65,BGKLV38-66BGKLV38-1,BGKLV38-228.7,25.2NotSatisfiedENCODE3
PRPF4K562shRNABGKLV38-67,BGKLV38-68BGKLV38-1,BGKLV38-20.5,0.0NotSatisfiedENCODE3
PRPF4HepG2shRNABGHLV26-33,BGHLV26-34BGHLV26-1,BGHLV26-20.0,0.0NotSatisfiedENCODE3
PRPF4HepG2shRNABGHLV35-31,BGHLV35-32BGHLV35-1,BGHLV35-210.9,11.3NotSatisfiedENCODE3
PRPF4HepG2shRNABGHLV37-39,BGHLV37-40BGHLV37-1,BGHLV37-264.9,30.1NotSatisfiedENCODE3
PRPF4HepG2shRNAENCSR466NRWENCSR093ERJPRPF4-BGHLV37-41D,PRPF4-BGHLV37-42DNT-BGHLV37-1D,NT-BGHLV37-2D51.0,53.8ReleasedENCODE3
PRPF4HepG2shRNABGHLV37-43,BGHLV37-44BGHLV37-1,BGHLV37-2NotSatisfiedENCODE3
PRPF4293TshRNABG293LV05-37,BG293LV05-38BG293LV05-1,BG293LV05-2NotSatisfiedENCORE2
PRPF4293TshRNAPRPF4-BG293LV05-39,PRPF4-BG293LV05-40NT-BG293LV05-1,NT-BG293LV05-2,SubmittingENCORE2
PRPF4293TshRNAPRPF4-BG293LV06-69B,PRPF4-BG293LV06-70BNT-BG293LV06-1B,NT-BG293LV06-2B,SequencedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    PRPF4: Click to RBP Image Database
  • Nuclei
  • Mutually Exclusive from Nucleolus
  • Speckles
  • Nuclear release mitosis












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    PRPF4Product_ID: RN093PW
    Lot_ID: 1
    Source: MBLI
    Target Name: PRPF4-human    		 HepG2_MBL_RN093PW_001_PRPF4.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using PRPF4 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-PRPF4 antibody (lanes under 'PRPF4').
    		 PRPF4-HEPG2.png<br>Caption: Western blot following shRNA against PRPF4 in HepG2 whole cell lysate using PRPF4 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against PRPF4.PRPF4 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
    		 PRPF4_K562.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using PRPF4 specific antibody. Lane 1 is 2% of ten million whole cell lysate input (lane under '10% input') , lane 2 is 20% of IP enrichment using rabbit normal IgG (lane under 'IgG') and lane 3 is 20% IP enrichment using rabbit polyclonal anti-PRPF4 antibody (lanes under 'anti-PRPF4').
    		 PRPF4-K562.png<br>Caption: Western blot following shRNA against PRPF4 in k562 whole cell lysate using PRPF4 specific antibody. Lane 1 is a ladder, lane 2 is k562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against PRPF4.PRPF4 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.








    RNA Targets
    • PRPF4 protein binds to 9,120 RNA regions.  





    Proteins bound to RNA
    • PRPF4 RNA is bound by 11 proteins.  






    PRPF4 protein has 9,120 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 9,120 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    PRPF4chr2238484931238484987-3.2559714.07999HepG2RAB17intron-Distal
    PRPF4chr116662148666621584-4.935968.13169HepG2PCintron-Distal
    PRPF4chr2118846173118846205+5.0353914.33014HepG2INSIG2intron-Proximal
    PRPF4chr10134368907134369006+3.949443.26022HepG2INPP5Aintron-Distal
    PRPF4chr4166300743166300806+4.760605.02240HepG2CPEintron-Distal,intron-Proximal
    PRPF4chr122698594226986080-4.3059035.41527HepG2ITPR25'-UTR,intron-Distal
    PRPF4chr22079279520792802-4.7180527.59166HepG2HS1BP3intron-Distal
    PRPF4chr63293686832936899+3.702263.05512HepG2BRD2intron-Proximal
    PRPF4chr204214347742143542+3.198075.62051HepG2L3MBTL1intron-Distal,intron-Proximal
    PRPF4chr203160674131606789+4.4918534.02379HepG2BPIFB2intron-Distal,intron-Proximal
    PRPF4chr194032438340324478-3.801713.26022HepG2DYRK1Bintron-Distal
    PRPF4chr8145150758145150827+3.2625915.42361HepG2CYC1CDS
    PRPF4chr9139686030139686092+4.1888116.86925HepG2TMEM141, RP11-216L13.17intron-Distal,intron-Proximal
    PRPF4chr2102335069102335156+4.7851314.34689HepG2MAP4K4intron-Distal
    PRPF4chr174240128042401365-4.797606.10370HepG2SLC25A39intron-Distal
    PRPF4chr3184042802184042874+3.205393.11118HepG2EIF4G1, EIF2B53'-UTR,CDS,intron-Distal
    PRPF4chr19028782190287875+3.613965.61462HepG2RP11-302M6.4, LRRC8Dintron-Distal,intron-Proximal
    PRPF4chr17814865778148717-3.159924.67313HepG2ZZZ3intron-Distal
    PRPF4chr27510088775100961+3.960859.82903HepG2HK2intron-Proximal
    PRPF4chr14103574236103574311+5.1007713.68497HepG2EXOC3L4intron-Distal
    PRPF4chr394388989438985-5.2900920.82697HepG2SETD5-AS1intron-Distal
    PRPF4chr22126647721266484-4.6750741.93614HepG2APOBintron-Distal,intron-Proximal
    PRPF4chr14105916328105916387+3.341584.35063HepG2TEX22, MTA1intron-Proximal
    PRPF4chr178005433580054381-3.1094210.84094HepG2FASNintron-Distal,intron-Proximal
    PRPF4chr42242588922425955-3.626263.05512HepG2GPR125CDS,intron-Distal
    PRPF4chr223668206736682095-4.448885.20041HepG2MYH9intron-Distal,intron-Proximal
    PRPF4chr125655227756552348+3.8297010.03997HepG2MYL6, MYL6BCDS,intron-Distal,intron-Proximal
    PRPF4chr64151747341517589+4.344165.35385HepG2FOXP4intron-Distal
    PRPF4chr719686331968783-3.735595.18989HepG2MAD1L1intron-Distal
    PRPF4chr9139944449139944501-4.286533.84437HepG2ENTPD2intron-Distal,intron-Proximal
    PRPF4chr112340421234100-3.075606.17297HepG2ACAP3CDS,intron-Distal,intron-Proximal
    PRPF4chr112791011279172-4.036638.17769HepG2DVL1intron-Distal
    PRPF4chr177986520379865256-3.149505.59141HepG2PCYT2intron-Distal,intron-Proximal
    PRPF4chr171767322917673319+3.063493.46130HepG2RAI1intron-Distal
    PRPF4chr6158994340158994386+3.4748216.87946HepG2TMEM181intron-Distal,intron-Proximal
    PRPF4chr214756630047566342-4.1864136.23868HepG2FTCDintron-Distal,intron-Proximal
    PRPF4chr206252685262526914+4.661955.59467HepG2DNAJC5intron-Distal
    PRPF4chr1115052884115052988-3.216755.40117HepG2TRIM33intron-Distal
    PRPF4chr157470220074702264-5.2275914.76135HepG2SEMA7A3'-UTR,intron-Distal
    PRPF4chr177544040875440473+3.302326.49835HepG2SEPT9intron-Distal
    PRPF4chr225064770550647768+3.375663.29499HepG2SELOintron-Distal
    PRPF4chr22897521528975306+4.8401216.07700HepG2PPP1CBintron-Distal
    PRPF4chr214686287946862975+4.153613.63122HepG2COL18A1intron-Distal
    PRPF4chr6167358382167358417-6.3822852.93998HepG2RP11-514O12.4, AL133458.1, RNASET2intron-Distal
    PRPF4chr65243549452435592-3.488443.68924HepG2TRAM2intron-Distal
    PRPF4chr135202634952026481-5.0101420.03760HepG2INTS6intron-Distal,intron-Proximal
    PRPF4chr394390009439075-3.786309.27901HepG2SETD5-AS1intron-Distal
    PRPF4chr177277216872772292-4.462685.90542HepG2NAT95'-UTR,intron-Distal,intron-Proximal
    PRPF4chr203601392036013990+3.035614.45614HepG2SRCintron-Distal
    PRPF4chr187420361474203661-4.542774.61288HepG2ZNF516intron-Distal
    PRPF4chr7100076800100076900-3.221604.13483HepG2TSC22D45'-UTR,intron-Distal,intron-Proximal
    PRPF4chr12100560688100560797-4.454433.90256HepG2GOLGA2Bintron-Distal,intron-Proximal
    PRPF4chr9139904931139905043-3.959396.24931HepG2ABCA23'-UTR,CDS,intron-Distal,intron-Proximal
    PRPF4chr173687586736875940+4.646026.75874HepG2MLLT6intron-Proximal
    PRPF4chr750352345035349+3.118383.00054HepG2RNF216P1, RBAK-RBAKDNintron-Distal,intron-Proximal
    PRPF4chr195615364856153684+3.940483.63122HepG2CCDC106, ZNF580, ZNF5815'-UTR,intron-Distal
    PRPF4chr225113703051137099+4.208514.57620HepG2SHANK3intron-Proximal
    PRPF4chr1166383936638484-3.737463.05512HepG2TPP1intron-Distal,intron-Proximal
    PRPF4chr49984981799849880-4.651516.83853HepG2EIF4Eintron-Distal
    PRPF4chr34862580448625944-4.902898.34521HepG2COL7A1CDS,intron-Distal,intron-Proximal
    PRPF4chr222011188620111962+5.343039.91068HepG2RANBP1intron-Distal
    PRPF4chr5172367091172367218+3.451664.13948HepG2ERGIC1intron-Distal
    PRPF4chr206092718860927221-4.619265.90542HepG2LAMA5intron-Distal,intron-Proximal
    PRPF4chr142461629124616373+3.695963.72699HepG2RNF31intron-Distal
    PRPF4chr11108241711082457+3.6873011.60592HepG2TARDBPCDS,intron-Distal
    PRPF4chr11199923911999357+4.256614.36329HepG2PLOD1intron-Distal
    PRPF4chr111700872117008817-4.444414.55101HepG2PLEKHA7intron-Distal
    PRPF4chr194515732345157401+3.226933.90917HepG2PVRintron-Distal,intron-Proximal
    PRPF4chrX102840684102840758+4.486334.36329HepG2TCEAL45'-UTR,CDS,intron-Distal,intron-Proximal
    PRPF4chr204214299442143062+3.630939.29902HepG2L3MBTL15'-UTR,intron-Distal
    PRPF4chr184734070747340722+4.53594400.00000HepG2SCARNA17intron-Distal
    PRPF4chr5138629598138629645+4.898126.58205HepG2MATR35'-UTR,intron-Distal
    PRPF4chr6158994386158994418+3.2369019.89935HepG2TMEM181intron-Proximal
    PRPF4chr162749732427497473-4.626265.23978HepG2GTF3C15'-UTR,CDS,intron-Distal,intron-Proximal
    PRPF4chr175556670255566793+4.230703.90256HepG2MSI2intron-Distal
    PRPF4chr7127231644127231712+4.3035020.67473HepG2ARF53'-UTR
    PRPF4chr222121255621212628-3.685614.59965HepG2PI4KAintron-Distal
    PRPF4chr6158987752158987784+5.4099023.95703HepG2TMEM181intron-Distal
    PRPF4chr24801064248010761+5.8328014.63797HepG2MSH65'-UTR,intron-Distal,intron-Proximal
    PRPF4chr114727935947279440+4.136643.63122HepG2NR1H3intron-Distal,intron-Proximal
    PRPF4chr7101565931101566098+3.962687.29513HepG2CUX1intron-Distal
    PRPF4chr222010536720105418+3.151933.92899HepG2RANBP15'-UTR,intron-Distal
    PRPF4chr10104503804104503895+3.4036712.48784HepG2WBP1L5'-UTR,CDS
    PRPF4chr64302822343028323+3.504897.67822HepG2KLC45'-UTR,intron-Distal,intron-Proximal
    PRPF4chr26535661365356634-4.344163.63122HepG2RAB1Aintron-Distal
    PRPF4chr4764041764138-4.002548.17769HepG2RP11-440L14.1intron-Distal
    PRPF4chr177011849270118565+5.3800423.06182HepG2SOX9intron-Distal
    PRPF4chr63068912930689232+3.332034.60395HepG2TUBBintron-Distal
    PRPF4chr9140087285140087371-4.800007.45950HepG2TPRNintron-Distal
    PRPF4chr34847049248470548-3.5124120.96666HepG2PLXNB1intron-Distal
    PRPF4chr434472233447325+3.4040719.47689HepG2HGFACintron-Distal
    PRPF4chr1748506804850770-6.2133521.98814HepG2PFN15'-UTR,intron-Distal,intron-Proximal
    PRPF4chr16545038545059+3.177455.82976HepG2RAB11FIP3intron-Distal
    PRPF4chr10976760976803-3.132815.40996HepG2LARP4Bintron-Distal
    PRPF4chr206070972260709821+4.6787319.40795HepG2LSM14B3'-UTR
    PRPF4chr177991415079914209-3.1176512.92915HepG2NOTUMintron-Distal
    PRPF4chr142352839423528540-3.3938110.87384HepG2ACIN1CDS,intron-Distal
    PRPF4chr1832624063262473+3.879353.86417HepG2MYL12B5'-UTR,intron-Distal
    PRPF4chr2178077722178077785+6.1992666.40667HepG2HNRNPA3intron-Distal
    PRPF4chr11776937777041-3.853127.32634HepG2PDDC1intron-Distal




    11 proteins are bound to PRPF4 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr9116054595116054695+3'-UTR3.257095.60526K562LIN28B
    chr9116054194116054254+3'-UTR3.523014.00430HepG2UPF1
    chr9116045739116045801+CDS,intron-Proximal3.662803.44979HepG2PRPF8
    chr9116041228116041274+CDS4.294784.42734K562UCHL5
    chr9116050451116050521+CDS,intron-Proximal3.354963.32039HepG2PPIG
    chr9116053124116053194+CDS,intron-Proximal4.419426.11702K562SF3B4
    chr9116049034116049111+CDS,intron-Proximal4.054083.31827HepG2GRWD1
    chr9116052769116052829+CDS4.563864.78556K562LIN28B
    chr9116045489116045545+CDS,intron-Proximal5.066316.75320K562AQR
    chr9116041224116041350+CDS,intron-Proximal3.998595.79432HepG2BCLAF1
    chr9116045647116045716+CDS,intron-Proximal4.162636.01372K562AQR
    chr9116043135116043182+intron-Distal4.016543.79098HepG2SUGP2
    chr9116042500116042642+intron-Distal4.9592213.94191HepG2PTBP1
    chr9116042472116042631+intron-Distal4.301049.95261K562PTBP1
    chr9116048571116048650+intron-Proximal3.812114.49024K562AQR
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein PRPF4 and its RNA.



    Diffrential Expression
    • 5,110 differentially expressed genes after Knockdown/Knockout PRPF4 protein.  





    • 95 RBPs can affect the levels of PRPF4.  







    5,110 differentially expressed genes after Knockdown/Knockout PRPF4 protein :

    Only display 100 entries as example. Please click "View All" button to see all 5,110 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    TSPAN6ENSG00000000003.10913.603201116.23600-0.289002.750401.97850HepG2PRPF4
    DPM1ENSG00000000419.8782.090301343.78720-0.7809017.1136015.45710HepG2PRPF4
    SCYL3ENSG00000000457.9177.25370119.480800.568902.569401.82160HepG2PRPF4
    FUCA2ENSG00000001036.91740.852002413.72270-0.471509.287707.99080HepG2PRPF4
    NIPAL3ENSG00000001461.12181.99980268.62720-0.561703.337102.49420HepG2PRPF4
    LAS1LENSG00000001497.12507.73100691.30870-0.445304.089403.16900HepG2PRPF4
    ANKIB1ENSG00000001629.51123.82980917.525600.292502.841102.05960HepG2PRPF4
    CYP51A1ENSG00000001630.113452.549602487.261100.473003.546602.68010HepG2PRPF4
    KRIT1ENSG00000001631.10881.37410629.464900.485505.776804.70170HepG2PRPF4
    BADENSG00000002330.939.5802081.96610-1.050202.215501.51610HepG2PRPF4
    LAP3ENSG00000002549.82347.936801726.881700.443108.360207.11440HepG2PRPF4
    CD99ENSG00000002586.133936.296102495.756800.6573020.4448018.68590HepG2PRPF4
    MAD1L1ENSG00000002822.11239.11270354.78780-0.569304.142603.21640HepG2PRPF4
    LASP1ENSG00000002834.132513.958406703.58430-1.4150095.6321092.67970HepG2PRPF4
    DBNDD1ENSG00000003249.9688.38910973.29490-0.499706.686405.54250HepG2PRPF4
    ALS2ENSG00000003393.101326.412601021.351700.376904.726503.74460HepG2PRPF4
    CASP10ENSG00000003400.10887.05660561.955800.6585010.174308.82600HepG2PRPF4
    CFLARENSG00000003402.152004.294601715.836500.224102.454901.72140HepG2PRPF4
    RBM5ENSG00000003756.123039.621702584.127000.234103.048702.24180HepG2PRPF4
    ARF5ENSG00000004059.6695.83150870.05850-0.322403.121602.30500HepG2PRPF4
    PLXND1ENSG00000004399.81480.154302207.91950-0.5769012.7398011.26000HepG2PRPF4
    KDM1AENSG00000004487.112754.290003149.56440-0.193502.238901.53600HepG2PRPF4
    RBM6ENSG00000004534.104252.722103488.529900.285704.509403.54700HepG2PRPF4
    RECQLENSG00000004700.11370.36290463.58400-0.323902.075701.39740HepG2PRPF4
    ST7ENSG00000004866.14504.36950391.471200.365502.570701.82240HepG2PRPF4
    CDC27ENSG00000004897.72178.405202970.34850-0.447409.198407.90650HepG2PRPF4
    LIG3ENSG00000005156.7796.234401053.49880-0.403904.718203.73740HepG2PRPF4
    ACSM3ENSG00000005187.71012.08620789.339300.358503.693702.81190HepG2PRPF4
    PON1ENSG00000005421.424.265705.478902.146902.819302.04030HepG2PRPF4
    WDR54ENSG00000005448.1273.69060119.66080-0.699402.480601.74380HepG2PRPF4
    CROTENSG00000005469.7409.40360158.217701.3715019.2659017.54780HepG2PRPF4
    ABCB4ENSG00000005471.111004.41120515.580800.9620020.6051018.84090HepG2PRPF4
    RHBDD2ENSG00000005486.12655.68180524.236500.322702.202101.50470HepG2PRPF4
    IBTKENSG00000005700.101610.391101861.75690-0.209302.188301.49300HepG2PRPF4
    ITGA3ENSG00000005884.1319.39690114.55410-2.5621014.8618013.29510HepG2PRPF4
    ZFXENSG00000005889.111481.43890772.915500.938508.208106.97000HepG2PRPF4
    ASB4ENSG00000005981.837.54620147.42760-1.9733013.6103012.09420HepG2PRPF4
    CRLF1ENSG00000006016.61353.371804326.28990-1.6766060.6345058.05950HepG2PRPF4
    TMEM98ENSG00000006042.71039.091101258.43910-0.276302.725201.95640HepG2PRPF4
    YBX2ENSG00000006047.830.751807.613402.014003.327902.48670HepG2PRPF4
    AP2B1ENSG00000006125.125123.800404013.448100.352307.015405.84890HepG2PRPF4
    CX3CL1ENSG00000006210.62742.385502367.756300.211802.300601.58810HepG2PRPF4
    SPATA20ENSG00000006282.151014.655601299.62120-0.357104.355403.40940HepG2PRPF4
    ALDH3B1ENSG00000006534.1191.53160160.45770-0.809903.895502.99300HepG2PRPF4
    GGCTENSG00000006625.13210.67190399.17130-0.9220010.072808.73110HepG2PRPF4
    VPS41ENSG00000006715.11758.91950620.802700.289702.346901.62780HepG2PRPF4
    ARHGAP44ENSG00000006740.1255.3258093.79280-0.761502.377501.65390HepG2PRPF4
    ELAC2ENSG00000006744.14706.01310968.81490-0.456505.603104.54260HepG2PRPF4
    PNPLA4ENSG00000006757.7382.73420269.117300.508003.676302.79680HepG2PRPF4
    ADIPOR2ENSG00000006831.91579.896302106.93480-0.415303.610202.73810HepG2PRPF4
    UPP2ENSG00000007001.813.573101.030003.719902.183501.48900HepG2PRPF4
    PROM1ENSG00000007062.7344.21740496.70540-0.529104.660303.68400HepG2PRPF4
    CCDC124ENSG00000007080.6217.38920313.37650-0.527603.309202.47010HepG2PRPF4
    KIAA0100ENSG00000007202.103128.749603576.17950-0.192802.263201.55620HepG2PRPF4
    GAS7ENSG00000007237.1435.15810100.67390-1.517806.711005.56590HepG2PRPF4
    PAX6ENSG00000007372.1612.1557033.69240-1.470802.361201.64020HepG2PRPF4
    RPUSD1ENSG00000007376.395.49120165.26660-0.791403.928703.02200HepG2PRPF4
    LUC7LENSG00000007392.121132.28710791.188300.517007.649506.44170HepG2PRPF4
    TSR3ENSG00000007520.3118.12390239.40830-1.019205.579704.52130HepG2PRPF4
    PIGQENSG00000007541.10165.06810228.42580-0.468702.250201.54550HepG2PRPF4
    E2F2ENSG00000007968.6103.07070225.50930-1.129604.219603.28710HepG2PRPF4
    JARID2ENSG00000008083.91204.79150977.383800.301703.148202.32830HepG2PRPF4
    AASSENSG00000008311.10818.82290506.440900.6931010.276408.92270HepG2PRPF4
    MPNDENSG00000008382.1198.74140147.27870-0.576802.136201.44870HepG2PRPF4
    MGST1ENSG00000008394.81561.029002050.39060-0.393406.456205.32880HepG2PRPF4
    CRY1ENSG00000008405.7239.97480326.56200-0.444502.611201.85790HepG2PRPF4
    NFIXENSG00000008441.12507.39130652.05060-0.361903.152202.33170HepG2PRPF4
    ST3GAL1ENSG00000008513.101597.339001361.824900.230002.283301.57250HepG2PRPF4
    IL32ENSG00000008517.121719.422601454.605800.241202.604801.85240HepG2PRPF4
    RPS20ENSG00000008988.56654.133505476.746600.280802.615501.86110HepG2PRPF4
    CSDE1ENSG00000009307.1112531.1623010238.700100.291405.851604.77050HepG2PRPF4
    REV3LENSG00000009413.111754.008301471.588900.253202.827602.04780HepG2PRPF4
    IYDENSG00000009765.1019.489601.582203.622604.090703.17020HepG2PRPF4
    FAM76AENSG00000009780.11173.24850110.930600.643102.849402.06710HepG2PRPF4
    VTA1ENSG00000009844.111913.101301532.024000.320404.319403.37700HepG2PRPF4
    MLXIPLENSG00000009950.115420.043002875.104200.9146011.7468010.31560HepG2PRPF4
    CD9ENSG00000010278.794.48920142.30860-0.590802.186601.49150HepG2PRPF4
    NCAPD2ENSG00000010292.82826.765904419.95380-0.6449020.3381018.58240HepG2PRPF4
    SEMA3GENSG00000010319.2215.77050430.64190-0.997003.181502.35750HepG2PRPF4
    SCMH1ENSG00000010803.121502.404501760.76060-0.228902.482501.74550HepG2PRPF4
    FYNENSG00000010810.13468.25790742.14540-0.664407.362206.17260HepG2PRPF4
    HIVEP2ENSG00000010818.41280.777401047.895600.289403.106002.29160HepG2PRPF4
    LYPLA2ENSG00000011009.6749.722801080.60140-0.527407.602506.39920HepG2PRPF4
    CLCN6ENSG00000011021.173610.045301601.475301.1725056.3489053.86800HepG2PRPF4
    TSPAN9ENSG00000011105.71267.24570799.155100.665006.586505.45080HepG2PRPF4
    BTBD7ENSG00000011114.10979.25050763.185800.359503.841802.94340HepG2PRPF4
    ABHD5ENSG00000011198.3155.5316092.222800.753903.363002.51730HepG2PRPF4
    AKAP8LENSG00000011243.131598.172601246.464200.358504.724603.74300HepG2PRPF4
    MBTD1ENSG00000011258.111649.523101130.296800.5452010.030808.69480HepG2PRPF4
    PTBP1ENSG00000011304.124004.509705766.21080-0.5260015.1929013.60870HepG2PRPF4
    DPF1ENSG00000011332.1527.1776052.96470-0.962602.075901.39760HepG2PRPF4
    SYT7ENSG00000011347.5531.93250252.885101.0727012.1820010.72840HepG2PRPF4
    PIK3C2AENSG00000011405.92836.148202403.627200.238603.064602.25600HepG2PRPF4
    ANLNENSG00000011426.61460.900202228.51960-0.6092014.4179012.86930HepG2PRPF4
    WIZENSG00000011451.13555.70710805.65820-0.535806.852305.69710HepG2PRPF4
    RABGAP1ENSG00000011454.121384.142101140.156000.279702.954102.15770HepG2PRPF4
    MAP4K3ENSG00000011566.101801.136602551.21600-0.5023010.471009.10710HepG2PRPF4
    SEMA3BENSG00000012171.131781.525602325.63870-0.384506.400405.27730HepG2PRPF4
    EXTL3ENSG00000012232.4370.88540692.40080-0.9006014.4264012.87720HepG2PRPF4
    NR1H4ENSG00000012504.9848.86520711.462100.254601.962301.30290HepG2PRPF4
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    95 RBPs can affect the gene expression of PRPF4 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    PRPF4ENSG00000136875.81046.24720790.508100.404305.280704.49360HepG2ACO1
    PRPF4ENSG00000136875.81327.38660878.448700.595504.789804.11490HepG2AKAP1
    PRPF4ENSG00000136875.8615.69180794.12970-0.367203.519502.66630HepG2AKAP8L
    PRPF4ENSG00000136875.81508.295401167.049300.370005.063604.18150HepG2AUH
    PRPF4ENSG00000136875.8573.20800762.94090-0.412502.160801.36380HepG2BCLAF1
    PRPF4ENSG00000136875.81162.24410944.404800.299302.003301.48700HepG2BOP1
    PRPF4ENSG00000136875.8930.51930790.225200.235702.113401.52040HepG2CKAP4
    PRPF4ENSG00000136875.8698.01630507.689000.459202.017001.36920HepG2CNOT7
    PRPF4ENSG00000136875.8496.09990866.99860-0.805408.831507.66480HepG2CPSF6
    PRPF4ENSG00000136875.81406.914101094.718700.361904.297903.52820HepG2CELF1
    PRPF4ENSG00000136875.8990.457001177.13540-0.249102.775302.03190HepG2DAZAP1
    PRPF4ENSG00000136875.8972.33820748.428200.377503.581602.26670HepG2DDX1
    PRPF4ENSG00000136875.81050.15670841.520900.319401.842501.32080HepG2DDX3X
    PRPF4ENSG00000136875.8676.68920984.54600-0.541002.492601.56550HepG2DDX59
    PRPF4ENSG00000136875.8538.42950726.06720-0.431302.954901.91290HepG2DDX5
    PRPF4ENSG00000136875.8547.46010707.82240-0.370602.491501.56020HepG2DHX30
    PRPF4ENSG00000136875.8551.10550756.27330-0.456604.719603.87790HepG2DKC1
    PRPF4ENSG00000136875.8548.59910733.88280-0.419803.850903.03220HepG2DNAJC21
    PRPF4ENSG00000136875.8534.09580727.37230-0.445605.277404.42190HepG2DNAJC2
    PRPF4ENSG00000136875.8331.76920694.92820-1.0667011.7177010.54930HepG2EIF2S1
    PRPF4ENSG00000136875.8707.27130524.023800.432502.706101.81290HepG2EIF3D
    PRPF4ENSG00000136875.81472.935201161.278400.342904.055503.07660HepG2EIF4G1
    PRPF4ENSG00000136875.8808.230501112.43720-0.460903.963402.99980HepG2EIF4G2
    PRPF4ENSG00000136875.8973.61070772.369000.334002.558901.75620HepG2EWSR1
    PRPF4ENSG00000136875.8981.05060774.780700.340402.023101.42800HepG2FXR1
    PRPF4ENSG00000136875.8565.66140982.76530-0.796907.824806.78400HepG2GPKOW
    PRPF4ENSG00000136875.8905.75330754.641500.263202.314901.41600HepG2HDGF
    PRPF4ENSG00000136875.8441.23240740.91320-0.747807.791306.79020HepG2HNRNPA1
    PRPF4ENSG00000136875.8554.29620824.11900-0.572205.077604.16020HepG2HNRNPC
    PRPF4ENSG00000136875.8798.346801158.20240-0.536808.526607.35700HepG2HNRNPF
    PRPF4ENSG00000136875.8928.82670727.692200.352002.291601.65200HepG2HNRNPK
    PRPF4ENSG00000136875.8871.124001072.29360-0.299803.502102.75170HepG2HNRNPL
    PRPF4ENSG00000136875.8500.23100937.87510-0.9068010.746909.60540HepG2HNRNPLL
    PRPF4ENSG00000136875.8780.12690618.574100.334702.428601.53620HepG2HNRNPM
    PRPF4ENSG00000136875.8691.50360818.67120-0.243501.841301.33750HepG2HNRNPU
    PRPF4ENSG00000136875.8697.221201140.49360-0.7100010.539109.21390HepG2IGF2BP1
    PRPF4ENSG00000136875.8582.05260836.24720-0.522808.080106.89540HepG2ILF2
    PRPF4ENSG00000136875.81387.67820779.407100.832109.056307.96870HepG2MATR3
    PRPF4ENSG00000136875.8598.74410956.60950-0.676004.225603.01410HepG2MTPAP
    PRPF4ENSG00000136875.8835.210401167.24270-0.482905.925904.81240HepG2NOL12
    PRPF4ENSG00000136875.8558.11830831.63840-0.575404.772503.80020HepG2NSUN2
    PRPF4ENSG00000136875.8521.46050730.19100-0.485704.975104.01500HepG2PPIL4
    PRPF4ENSG00000136875.8287.12020772.55490-1.4280033.6043031.51340HepG2PRPF4
    PRPF4ENSG00000136875.8591.64770851.56120-0.525402.790201.56860HepG2PRPF6
    PRPF4ENSG00000136875.8481.74820666.01960-0.467302.646001.85570HepG2PRPF8
    PRPF4ENSG00000136875.8939.84420721.840900.380603.951303.32310HepG2PTBP1
    PRPF4ENSG00000136875.8463.311001114.22310-1.2660025.0926023.54110HepG2PUF60
    PRPF4ENSG00000136875.8992.605601181.92760-0.251801.919001.35410HepG2PUM2
    PRPF4ENSG00000136875.8564.09560781.74080-0.470804.310503.55640HepG2QKI
    PRPF4ENSG00000136875.81348.26780955.430400.496806.044704.83800HepG2RBM15
    PRPF4ENSG00000136875.81449.765701119.926200.372304.427503.81210HepG2RBM22
    PRPF4ENSG00000136875.8719.727201247.74540-0.7938011.2149010.00030HepG2RPLP0
    PRPF4ENSG00000136875.8544.93670767.85670-0.494702.485801.58990HepG2RPS10
    PRPF4ENSG00000136875.8548.05950729.06870-0.411704.292603.52180HepG2SAFB2
    PRPF4ENSG00000136875.81550.67300942.995400.717505.919004.90890HepG2SF3A3
    PRPF4ENSG00000136875.8595.20230928.28500-0.641206.387905.35240HepG2SF3B1
    PRPF4ENSG00000136875.8783.350501068.33670-0.447603.787702.98700HepG2SLBP
    PRPF4ENSG00000136875.81047.168101264.91910-0.272602.913302.40320HepG2SRFBP1
    PRPF4ENSG00000136875.81424.39910784.417700.8606021.1572020.10680HepG2SRSF1
    PRPF4ENSG00000136875.8704.569101137.91360-0.6916013.0256011.70720HepG2SRSF7
    PRPF4ENSG00000136875.8884.538601098.25570-0.312203.352102.79970HepG2SSB
    PRPF4ENSG00000136875.81513.987601251.149400.275003.238802.57650HepG2SUCLG1
    PRPF4ENSG00000136875.8439.17520859.35660-0.968509.487908.36140HepG2SUPV3L1
    PRPF4ENSG00000136875.8607.39080914.25760-0.590005.525604.55390HepG2TARDBP
    PRPF4ENSG00000136875.8317.49910795.52930-1.3252025.7858024.54910HepG2TIAL1
    PRPF4ENSG00000136875.8864.724601088.52530-0.332102.650001.79620HepG2TUFM
    PRPF4ENSG00000136875.81469.018601152.171500.350402.042501.32890HepG2UBE2L3
    PRPF4ENSG00000136875.81218.58210807.409300.5937010.571909.52260HepG2UTP3
    PRPF4ENSG00000136875.81097.67350847.766400.372602.937601.71570K562AARS
    PRPF4ENSG00000136875.8676.69760939.00890-0.472604.193103.38630K562AKAP8L
    PRPF4ENSG00000136875.82437.710801753.112000.475504.731704.00140K562AQR
    PRPF4ENSG00000136875.82199.568701612.873100.447502.685702.04230K562DDX47
    PRPF4ENSG00000136875.8636.518701115.67150-0.809608.917206.15450K562DDX51
    PRPF4ENSG00000136875.81404.541601033.120900.443003.939102.83540K562EFTUD2
    PRPF4ENSG00000136875.81342.915901639.79100-0.288103.123802.36660K562EIF2S2
    PRPF4ENSG00000136875.81736.376301106.262400.650304.392603.05250K562EIF3D
    PRPF4ENSG00000136875.81146.51600858.803000.416804.855903.81670K562EIF3G
    PRPF4ENSG00000136875.81160.77880704.035900.721309.383507.86760K562EIF4A3
    PRPF4ENSG00000136875.81558.23950732.168901.0896030.8013028.92210K562FXR1
    PRPF4ENSG00000136875.8760.395901015.25080-0.417003.378102.50340K562GPKOW
    PRPF4ENSG00000136875.8716.37830927.71210-0.373002.808502.20710K562HNRNPC
    PRPF4ENSG00000136875.81334.26890941.834100.502404.327002.74340K562HNRNPK
    PRPF4ENSG00000136875.81600.093201137.647900.492004.073202.93010K562HNRNPM
    PRPF4ENSG00000136875.81515.90500991.140300.612908.471706.96100K562MAGOH
    PRPF4ENSG00000136875.8934.73150703.012600.410903.752302.30040K562NCBP2
    PRPF4ENSG00000136875.81102.687601377.86670-0.321404.667203.73040K562NSUN2
    PRPF4ENSG00000136875.8554.15860893.47480-0.689102.858901.84780K562PABPN1
    PRPF4ENSG00000136875.81332.66790881.820000.595706.935105.36400K562PCBP2
    PRPF4ENSG00000136875.81940.005101005.342900.9483015.9104014.08860K562PRPF8
    PRPF4ENSG00000136875.81443.57820962.975100.584008.051606.96020K562PTBP1
    PRPF4ENSG00000136875.8762.40220931.34410-0.288801.785501.33040K562PUS1
    PRPF4ENSG00000136875.81495.33120923.230300.695609.372507.67720K562RBM22
    PRPF4ENSG00000136875.81268.96730971.586700.385102.905901.78130K562NELFE
    PRPF4ENSG00000136875.81467.873001024.129600.519204.339803.31190K562RPS19
    PRPF4ENSG00000136875.8793.12090585.551800.437602.538601.58470K562RPS3
    PRPF4ENSG00000136875.81457.09240994.298500.551206.642104.97140K562SAFB
    PRPF4ENSG00000136875.81169.63640736.539400.667109.972508.30320K562SF3B4
    PRPF4ENSG00000136875.81928.70180944.067101.0306023.8302021.75060K562SRSF1
    PRPF4ENSG00000136875.81280.713001659.73390-0.374002.723201.48410K562STAU1
    PRPF4ENSG00000136875.81836.282301119.322100.7141013.1768011.38470K562SYNCRIP
    PRPF4ENSG00000136875.8515.94950800.03990-0.632805.187503.86350K562TIAL1
    PRPF4ENSG00000136875.81425.762401691.38600-0.246502.734001.47320K562TROVE2
    PRPF4ENSG00000136875.8923.02180686.641100.426702.767501.67510K562U2AF1
    PRPF4ENSG00000136875.81149.96030709.077300.6975010.527508.96060K562U2AF2
    PRPF4ENSG00000136875.8800.343401030.28710-0.364402.313901.39110K562UCHL5
    PRPF4ENSG00000136875.8984.376801460.97550-0.5696011.241809.91370K562UPF1
    PRPF4ENSG00000136875.8973.762101250.12000-0.360403.245702.30200K562WDR3
    PRPF4ENSG00000136875.81524.335201975.21620-0.373802.170001.41660K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    249 alternative splicing events after Knockdown/Knockout PRPF4 protein :

    Only display 100 entries as example. Please click "View All" button to see all 249 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SESNRNP70ENSG00000104852.10chr19+4960537049606844496046464960472849607890496079920.090000.000010.00420includedHepG2PRPF4
    SEWACENSG00000095787.17chr10+2888466128884970288796482887976128897114288973600.080000.000550.09508includedHepG2PRPF4
    SESREBF1ENSG00000072310.12chr17-1772683117726921177234031772383517740040177403010.239000.000100.02986includedHepG2PRPF4
    SEARHGEF11ENSG00000132694.14chr1-1569082091569083051569070401569072881569093391569097020.496000.000000.00001includedHepG2PRPF4
    SENPRL3ENSG00000103148.11chr16-1735051735441691241692541805201805900.411000.000060.01877includedHepG2PRPF4
    SEMYH10ENSG00000133026.8chr17-8479960847999084730378473130848055384806560.089000.000070.02243includedHepG2PRPF4
    SESEC31AENSG00000138674.12chr4-8375208983752128837501528375021183763292837636340.381000.000000.00000includedHepG2PRPF4
    SEWNK1ENSG00000060237.12chr12+9770319782709712489714369804309805140.104000.000040.01376includedHepG2PRPF4
    SESPTAN1ENSG00000197694.9chr9+1313719291313719441313714001313715631313739921313741240.086000.000380.07515includedHepG2PRPF4
    SEMLLT4ENSG00000130396.16chr6+1683332481683334401683256901683257711683438081683438740.094000.000020.00980includedHepG2PRPF4
    SEMAP2K3ENSG00000034152.14chr17+2119939721199522211879832118828121201724212017910.057000.000440.08327includedHepG2PRPF4
    SESNHG8ENSG00000269893.2chr4+1192000981192002921191999121191999471192005431192005860.179000.000580.09884includedHepG2PRPF4
    SESRSF6ENSG00000124193.10chr20+4208779242088060420870004208714942088410420885350.285000.000000.00000includedHepG2PRPF4
    SELMO7ENSG00000136153.15chr13+7638328976383319763784247637867776391296763914140.215000.000000.00102includedHepG2PRPF4
    SEADRM1ENSG00000130706.8chr20+6087951660879633608786236087883760881252608813760.109000.000130.03631includedHepG2PRPF4
    SEKIAA1109ENSG00000138688.11chr4+1232375021232377031232366161232368431232378861232380170.163000.000350.07110includedHepG2PRPF4
    SENDUFA8ENSG00000119421.5chr9-1249145231249146871249103901249105561249219051249220660.086000.000000.00168includedHepG2PRPF4
    SEWDR59ENSG00000103091.10chr16-7493359574933652749275767492771074937844749380710.140000.000000.00088includedHepG2PRPF4
    SEHAGHENSG00000063854.8chr16-1876507187660318728651873038187671218768420.344000.000000.00098includedHepG2PRPF4
    SESTRADAENSG00000266173.1chr17-6180399761804055617913656179146861805693618057730.406000.000210.05047includedHepG2PRPF4
    SESMPD4ENSG00000136699.15chr2-1309187581309188451309149331309149691309219461309220180.211000.000000.00084includedHepG2PRPF4
    SESRSF2ENSG00000161547.10chr17-7473185374731957747302287473124074732235747326370.068000.000100.02874includedHepG2PRPF4
    SECOBLL1ENSG00000082438.11chr2-1655836151655836541655789341655790321655844781655845510.242000.000000.00000includedHepG2PRPF4
    SESEPT2ENSG00000168385.13chr2+2422638232422640772422636302422636562422654072422655280.073000.000030.01356includedHepG2PRPF4
    SEATP13A3ENSG00000133657.10chr3-1941329271941330171941234051941268451941344871941345680.293000.000000.00008includedHepG2PRPF4
    SEMFFENSG00000168958.15chr2+2282119412282121002282050072282050962282172292282172890.079000.000550.09472includedHepG2PRPF4
    SETBCKENSG00000145348.12chr4-1071158741071159111071147651071149271071339061071339920.137000.000530.09357includedHepG2PRPF4
    SEASPSCR1ENSG00000169696.11chr17+7994048979940552799370597993711579941429799415440.061000.000480.08926includedHepG2PRPF4
    SEGPR126ENSG00000112414.10chr6+1427620441427620901427593481427595011427644731427674030.111000.000490.08926includedHepG2PRPF4
    SETSC2ENSG00000103197.12chr16+2127598212772721264912126586212903221291970.240000.000260.05814includedHepG2PRPF4
    SEFN1ENSG00000115414.14chr2-2162576532162579262162563542162565372162592502162594420.113000.000000.00000includedHepG2PRPF4
    SEABI1ENSG00000136754.12chr10-2704458327044670270405262704071227047990270481670.375000.000000.00000includedHepG2PRPF4
    SEHMGN3ENSG00000118418.10chr6-7991177279911872799109617991144379911992799121060.055000.000270.05914includedHepG2PRPF4
    SERBM39ENSG00000131051.16chr20-3432722534327469343268893432693934328446343285190.125000.000160.04189includedHepG2PRPF4
    SEMSMO1ENSG00000052802.8chr4+1662544911662547771662488721662489161662589401662590890.094000.000000.00009includedHepG2PRPF4
    SESCAMP5ENSG00000198794.7chr15+7530893375309090753050177530514675310210753102660.436000.000050.01642includedHepG2PRPF4
    SERPL17ENSG00000265681.2chr18-4701810547018203470178864701795447018644470187690.229000.000000.00011includedHepG2PRPF4
    SEAP1G1ENSG00000166747.8chr16-7180177971801788717993917179948771803525718036020.197000.000000.00163includedHepG2PRPF4
    SECTD-3074O7.11ENSG00000256349.1chr11+6629064266290836662887406628884766290926662910470.315000.000440.08273includedHepG2PRPF4
    SEHMGCS1ENSG00000112972.10chr5-4330786743307926432986194329907743313457433135760.120000.000030.01356includedHepG2PRPF4
    SESRSF3ENSG00000112081.12chr6+3656759736568053365666253656676036568928365689670.103000.000000.00136includedHepG2PRPF4
    SERNF181ENSG00000168894.5chr2+8582364185823772858228708582297285824029858240540.089000.000000.00102includedHepG2PRPF4
    SELYRM1ENSG00000102897.5chr16+2091161920911857209112232091132620926877209270360.129000.000000.00187includedHepG2PRPF4
    SEHNRNPH1ENSG00000169045.13chr5-1790425461790425961790411811790419601790431261790432190.054000.000000.00000includedHepG2PRPF4
    SEGANABENSG00000089597.12chr11-6240178162401847624009166240098662402292624024720.263000.000000.00000includedHepG2PRPF4
    SEKIF1BENSG00000054523.12chr1+1038616810386417103848151038495310394577103946960.180000.000020.00855includedHepG2PRPF4
    SEFBLN1ENSG00000077942.13chr22+4595879145958996459463714594649545970390459705330.110000.000030.01210includedHepG2PRPF4
    SESS18ENSG00000141380.9chr18-2361579423615887236149682361509123618518236186230.175000.000000.00038includedHepG2PRPF4
    SERP11-407N17.3ENSG00000258941.2chr14+3979013139790260397884123978849539796067397962260.142000.000370.07428includedHepG2PRPF4
    SETJP1ENSG00000104067.12chr15-3001198030012220300104693001134230012561300129120.293000.000000.00004includedHepG2PRPF4
    SERPS24ENSG00000138326.14chr10+7979996179799983797969517979706279800372798004550.262000.000000.00000includedHepG2PRPF4
    SETTYH3ENSG00000136295.10chr7+268759226876882687051268727226892002689273-0.230000.000080.02422excludedHepG2PRPF4
    SEDCUN1D5ENSG00000137692.7chr11-102953476102953568102937216102937296102953984102954055-0.194000.000500.09002excludedHepG2PRPF4
    SEPPP6R2ENSG00000100239.11chr22+508754165087549750874795508748815087593450876032-0.181000.000150.03820excludedHepG2PRPF4
    SECFBENSG00000243649.4chr6+319185143191872131918062319181803191892031919021-0.069000.000240.05471excludedHepG2PRPF4
    SEPPP2R3CENSG00000092020.6chr14-355858153558594335579730355798353559110735591519-0.177000.000370.07440excludedHepG2PRPF4
    SEMRPS18CENSG00000163319.6chr4+843794988437958284378061843781118438089284380950-0.225000.000030.01280excludedHepG2PRPF4
    SESLC6A4ENSG00000108576.5chr17-285272142852734728521336285255482853018928530357-0.107000.000140.03748excludedHepG2PRPF4
    SEMRPS10ENSG00000048544.5chr6-421818574218193042179518421796554218201742182082-0.161000.000000.00008excludedHepG2PRPF4
    SEZFAS1ENSG00000177410.8chr20+478974394789750147897021478971074790558147905797-0.172000.000110.02993excludedHepG2PRPF4
    SEIQSEC1ENSG00000144711.9chr3-129566031295663312954927129550531295709312957233-0.091000.000540.09472excludedHepG2PRPF4
    SEPKP4ENSG00000144283.17chr2+159525689159525814159522924159523075159526231159526427-0.051000.000240.05429excludedHepG2PRPF4
    SERPL7L1ENSG00000146223.10chr6+428485984284870442847372428476894285118842851352-0.088000.000010.00723excludedHepG2PRPF4
    SEASRGL1ENSG00000162174.8chr11+621237966212393962105438621056396212445862124673-0.119000.000230.05349excludedHepG2PRPF4
    SEEIF4HENSG00000106682.10chr7+736045767360463673604151736042487360907073609208-0.072000.000000.00001excludedHepG2PRPF4
    SEYME1L1ENSG00000136758.14chr10-274313152743141427425204274253142743435627434519-0.113000.000540.09424excludedHepG2PRPF4
    SECCT4ENSG00000115484.10chr2-621151586211539262112154621122076211551562115748-0.078000.000200.04931excludedHepG2PRPF4
    SESPTAN1ENSG00000197694.9chr9+131355261131355321131353755131353904131356453131356652-0.240000.000090.02668excludedHepG2PRPF4
    SEBAG6ENSG00000204463.8chr6-316120833161219131611858316119713161230131612379-0.139000.000210.04952excludedHepG2PRPF4
    SEPICALMENSG00000073921.13chr11-856891128568913685687665856877258569217185692271-0.162000.000500.09002excludedHepG2PRPF4
    SEDPP9ENSG00000142002.12chr19-468320146833364682707468285046834884683641-0.181000.000220.05265excludedHepG2PRPF4
    SEAHSA2ENSG00000173209.18chr2+614106816141079761408472614085406141184661411935-0.106000.000200.04931excludedHepG2PRPF4
    SEAHSA2ENSG00000173209.18chr2+614131146141321661412636614127536141358061413632-0.330000.000020.00864excludedHepG2PRPF4
    SECHD1LENSG00000131778.13chr1+146756023146756172146747767146747921146757000146757164-0.064000.000270.05820excludedHepG2PRPF4
    SEMACF1ENSG00000127603.19chr1+399465913994670239945469399456813995027239950402-0.053000.000050.01814excludedHepG2PRPF4
    SEADH4ENSG00000198099.4chr4-100064316100064456100063829100063931100065355100065427-0.052000.000060.01889excludedHepG2PRPF4
    SEMRRFENSG00000148187.13chr9+125027740125028059125027165125027217125033142125033354-0.110000.000490.08971excludedHepG2PRPF4
    SEERBB2IPENSG00000112851.10chr5+653679966536811965349233653507796537085165371058-0.070000.000070.02180excludedHepG2PRPF4
    SESERPINA5ENSG00000188488.9chr14+950479519504804795047730950478279505368295054318-0.106000.000040.01394excludedHepG2PRPF4
    SEMYO5CENSG00000128833.8chr15-525639595256404152561949525620575256477652564920-0.228000.000490.08966excludedHepG2PRPF4
    SEFNBP4ENSG00000109920.8chr11-477472884774738847746023477463304775292547753113-0.172000.000050.01747excludedHepG2PRPF4
    SEZNF384ENSG00000126746.13chr12-678782867878766787292678762667881116788349-0.248000.000080.02357excludedHepG2PRPF4
    SESSUH2ENSG00000125046.10chr3-868163386817558677444867754386936758693747-0.239000.000280.05979excludedHepG2PRPF4
    SEERMP1ENSG00000099219.9chr9-580502658052175801175580132858056105805785-0.136000.000150.03847excludedHepG2PRPF4
    SETGFBR2ENSG00000163513.13chr3+306646903066476530648092306484693068623830686407-0.126000.000020.01049excludedHepG2PRPF4
    SECOX20ENSG00000203667.5chr1+245005245245005360244998960244999058245005496245005560-0.192000.000000.00128excludedHepG2PRPF4
    SETAF15ENSG00000172660.7chr17+341609103416094534151081341512023416156934161602-0.056000.000260.05755excludedHepG2PRPF4
    SEEHBP1ENSG00000115504.10chr2+632150656321517363206322632064706321785063217975-0.146000.000240.05447excludedHepG2PRPF4
    SECDC42BPAENSG00000143776.14chr1-227239581227239686227235627227235711227257477227257554-0.297000.000090.02651excludedHepG2PRPF4
    SERALYENSG00000125970.7chr20+326528493265296632581485325819373265987132660136-0.188000.000370.07440excludedHepG2PRPF4
    SEACSS2ENSG00000131069.15chr20+335097653350979533509450335096693351112533511234-0.071000.000390.07665excludedHepG2PRPF4
    SEABCC2ENSG00000023839.6chr10+101579184101579299101578845101579026101590063101590190-0.079000.000000.00098excludedHepG2PRPF4
    SEFLNBENSG00000136068.10chr3+581275845812765658124008581242565812837658128479-0.226000.000000.00002excludedHepG2PRPF4
    SESLC7A2ENSG00000003989.12chr8+174120681741220817409272174094951741580317415906-0.169000.000320.06763excludedHepG2PRPF4
    SERPRD1AENSG00000141425.13chr18-336207693362082833613714336138003364721633647493-0.068000.000330.06827excludedHepG2PRPF4
    SEWSB1ENSG00000109046.10chr17+256347692563494525633807256339082563612525636298-0.205000.000170.04196excludedHepG2PRPF4
    SERP11-216L13.19ENSG00000273066.1chr9+139699808139699909139699213139699268139700529139701124-0.115000.000590.09897excludedHepG2PRPF4
    SEUSP25ENSG00000155313.11chr21+172220951722219117214716172148591723658617236765-0.059000.000500.09002excludedHepG2PRPF4
    SEDHRS2ENSG00000100867.10chr14+241080132410821324105575241059812410838724108565-0.073000.000000.00001excludedHepG2PRPF4
    SEC11orf54ENSG00000182919.10chr11+934751289347526093474824934748949348046793480614-0.267000.000560.09567excludedHepG2PRPF4





    1 RBPs can affect the splicing of PRPF4 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    A3SSPRPF4ENSG00000136875.8chr9+1160527291160528191160527451160528191160504541160505440.194000.000000.00000longerK562AQR
    A3SSPRPF4ENSG00000136875.8chr9+1160388111160390051160388241160390051160379211160380500.573000.000000.00000longerK562AQR
    A5SSPRPF4ENSG00000136875.8chr9+1160503991160506171160503991160505441160527451160528190.051000.000440.00939longerK562AQR
    A5SSPRPF4ENSG00000136875.8chr9+1160531771160534161160531771160532961160537461160550560.080000.000000.00000longerK562AQR

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein PRPF4 and its RNA.