C11orf54

General Information

Gene Name       : C11orf54
Gene ID             : ENSG00000182919.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C11orf54)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C11orf54ENSG00000182919.1420.9417.8419.39ENCSR000AEF
HepG2C11orf54ENSG00000182919.1415.6428.7922.21ENCSR985KAT
K562C11orf54ENSG00000182919.1418.0416.3717.20ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C11orf54 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C11orf54 RNA is bound by 10 proteins.  







eCLIP assay for C11orf54 is not avaliable on ENCORE database.





10 proteins are bound to C11orf54 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr119349569493495743+3'-UTR3.595144.50550K562UPF1
chr119349556593495628+3'-UTR4.039693.35877HepG2UPF1
chr119349556593495618+3'-UTR4.393324.01524K562FAM120A
chr119347487093474926+5'-UTR,intron-Proximal5.0595732.43556HepG2PRPF8
chr119348032193480423+5'-UTR,intron-Distal,intron-Proximal3.862205.56216HepG2KHSRP
chr119347957793479674+5'-UTR,intron-Distal,intron-Proximal4.2522613.35401HepG2U2AF2
chr119348059493480622+5'-UTR,CDS,intron-Distal,intron-Proximal3.438447.42278HepG2BCLAF1
chr119348715293487201+CDS3.097845.00751HepG2BCLAF1
chr119349468093494760+CDS,intron-Proximal4.086493.60906K562SND1
chr119348843493488479+CDS,intron-Distal3.283825.91405HepG2BCLAF1
chr119348709793487152+CDS,intron-Proximal5.503089.78817HepG2BCLAF1
chr119349048193490503+CDS,intron-Distal,intron-Proximal3.238725.40132HepG2BCLAF1
chr119348358293483611+CDS,intron-Proximal3.261625.40132HepG2BCLAF1
chr119349050393490649+CDS,intron-Distal,intron-Proximal4.0217719.19238HepG2BCLAF1
chr119348849793488553+CDS,intron-Distal,intron-Proximal4.006569.09836HepG2BCLAF1
chr119348684593486925+CDS,intron-Proximal4.5835519.10180HepG2BCLAF1
chr119348305893483205+intron-Distal4.152838.47371K562KHSRP
chr119347736693477424+intron-Distal3.250585.82614HepG2HNRNPL
chr119348120493481263+intron-Distal5.294809.73701HepG2QKI
chr119348576893485850+intron-Distal4.232847.22843HepG2PTBP1
chr119348331393483379+intron-Distal4.454684.10688K562KHSRP
chr119348567293485822+intron-Distal5.501708.42544K562PTBP1
chr119348338393483475+intron-Distal,intron-Proximal3.686448.96569HepG2U2AF2
chr119347711693477219+intron-Distal3.9353323.44947HepG2HNRNPL
chr119347712693477220+intron-Distal3.555697.51876K562HNRNPL
chr119348567593485768+intron-Distal6.0955916.12958HepG2PTBP1
chr119348302993483220+intron-Distal3.230414.19326HepG2KHSRP
chr119348085093480929+intron-Distal4.359097.72109HepG2U2AF2
chr119348319693483242+intron-Distal5.069827.27507HepG2U2AF2
chr119347765093477728+intron-Distal3.072934.08160HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C11orf54 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C11orf54 is not available on ENCORE database.

  • 110 RBPs can affect the levels of C11orf54.  








The Knockdown/knockout RNA-Seq assay for C11orf54 is not available on ENCORE database.





110 RBPs can affect the gene expression of C11orf54 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C11orf54ENSG00000182919.10544.797201103.93220-1.0189027.1387025.69380HepG2ACO1
C11orf54ENSG00000182919.10869.701502880.24450-1.7276038.1724036.51410HepG2AKAP1
C11orf54ENSG00000182919.10868.406001109.14470-0.353003.993503.08470HepG2AKAP8L
C11orf54ENSG00000182919.10510.25520758.23340-0.571403.295902.27470HepG2BCCIP
C11orf54ENSG00000182919.10885.60890658.902500.426502.905401.98290HepG2BCLAF1
C11orf54ENSG00000182919.10730.76530575.687500.344002.116201.58750HepG2BOP1
C11orf54ENSG00000182919.101340.62170924.503300.536106.878305.73450HepG2CALR
C11orf54ENSG00000182919.101680.307402264.20540-0.430303.762302.87040HepG2CIRBP
C11orf54ENSG00000182919.101295.524601103.723500.231102.476601.84030HepG2CKAP4
C11orf54ENSG00000182919.101068.454801510.68860-0.499702.682101.92960HepG2CNOT7
C11orf54ENSG00000182919.101497.90030528.509401.5028033.8289031.78910HepG2CPSF6
C11orf54ENSG00000182919.10713.588101301.88920-0.8674013.0640011.86970HepG2CELF1
C11orf54ENSG00000182919.101729.27130941.215300.8775016.8106014.73770HepG2DDX24
C11orf54ENSG00000182919.101587.727602759.18920-0.7973010.921109.75470HepG2DDX3X
C11orf54ENSG00000182919.10425.16900745.47130-0.810106.215805.11200HepG2DDX55
C11orf54ENSG00000182919.101523.648101012.937700.588906.417904.93600HepG2DDX5
C11orf54ENSG00000182919.101223.314102369.88780-0.9540012.9462011.73040HepG2DDX6
C11orf54ENSG00000182919.101058.15690749.160900.498104.788903.51620HepG2DHX30
C11orf54ENSG00000182919.101644.139201056.172100.6384013.3937012.13230HepG2DKC1
C11orf54ENSG00000182919.101480.291402278.54110-0.622206.716505.81910HepG2EIF2S1
C11orf54ENSG00000182919.10636.33960833.99440-0.390202.961401.74880HepG2EIF2S2
C11orf54ENSG00000182919.10510.06230785.98470-0.623803.598602.57560HepG2EIF3D
C11orf54ENSG00000182919.101535.877302518.20590-0.713307.738506.67150HepG2EIF4A3
C11orf54ENSG00000182919.10881.927802451.54030-1.4750022.7546020.92850HepG2EIF4B
C11orf54ENSG00000182919.101907.808001323.028100.528005.010503.93470HepG2EIF4G2
C11orf54ENSG00000182919.101497.52550952.337900.652908.036006.31080HepG2ESF1
C11orf54ENSG00000182919.101960.298801676.526500.225502.466501.89360HepG2ETF1
C11orf54ENSG00000182919.10478.196801110.03720-1.2149015.8850014.29940HepG2FIP1L1
C11orf54ENSG00000182919.10886.00870620.529700.513703.969402.46850HepG2FKBP4
C11orf54ENSG00000182919.101115.57230529.421701.075205.604604.16170HepG2FTO
C11orf54ENSG00000182919.10933.169401316.82480-0.496903.015701.85090HepG2FUS
C11orf54ENSG00000182919.101015.065102540.30990-1.3234027.9060025.99570HepG2FXR1
C11orf54ENSG00000182919.101143.339002356.74890-1.0435016.3464014.79270HepG2G3BP1
C11orf54ENSG00000182919.101705.79540599.098201.5095013.4805012.16890HepG2GPKOW
C11orf54ENSG00000182919.10840.333901240.68660-0.562103.315501.58620HepG2GTF2F1
C11orf54ENSG00000182919.10606.07470784.17630-0.371702.478201.86420HepG2HNRNPA1
C11orf54ENSG00000182919.10406.64880872.25210-1.1010015.8303014.30700HepG2HNRNPC
C11orf54ENSG00000182919.101080.82220601.770300.8447017.2706015.67610HepG2HNRNPF
C11orf54ENSG00000182919.101606.217702385.86380-0.570806.904705.83910HepG2HNRNPK
C11orf54ENSG00000182919.101439.69850571.731201.3323025.0626023.47540HepG2HNRNPLL
C11orf54ENSG00000182919.10289.33980765.95000-1.4045024.7852022.49590HepG2HNRNPM
C11orf54ENSG00000182919.101049.03000592.569100.8239012.6598011.22810HepG2IGF2BP1
C11orf54ENSG00000182919.101392.491302395.66880-0.7828010.766809.52920HepG2IGF2BP2
C11orf54ENSG00000182919.101048.79230885.085800.244702.581801.87130HepG2ILF2
C11orf54ENSG00000182919.101816.721702409.47440-0.407402.517201.57040HepG2KHSRP
C11orf54ENSG00000182919.10823.393301248.53940-0.600604.459003.39580HepG2LARP4
C11orf54ENSG00000182919.101418.864102541.19470-0.8408011.6837010.36810HepG2MAGOH
C11orf54ENSG00000182919.101355.268402555.49140-0.9150012.4282011.16010HepG2MATR3
C11orf54ENSG00000182919.10539.90280822.65370-0.607602.702701.66270HepG2METAP2
C11orf54ENSG00000182919.10656.97130898.50580-0.451703.864202.91170HepG2MSI2
C11orf54ENSG00000182919.101271.85980583.109901.125004.908803.59430HepG2MTPAP
C11orf54ENSG00000182919.10676.784602615.74760-1.9505046.4129044.08290HepG2NCBP2
C11orf54ENSG00000182919.101086.173701537.73450-0.501603.155201.62810HepG2NKRF
C11orf54ENSG00000182919.101040.589001388.36790-0.416002.373501.66810HepG2NOL12
C11orf54ENSG00000182919.10446.66490684.38710-0.615602.525101.48580HepG2NONO
C11orf54ENSG00000182919.101536.62110506.955201.5997038.0281035.79320HepG2NSUN2
C11orf54ENSG00000182919.10708.16870857.67090-0.276302.267701.49410HepG2PARN
C11orf54ENSG00000182919.101381.083002235.92760-0.6951014.6608013.44370HepG2PCBP1
C11orf54ENSG00000182919.101292.03950736.573300.8106017.8702016.18770HepG2PRPF4
C11orf54ENSG00000182919.10969.48290575.232100.753007.985706.69670HepG2PRPF8
C11orf54ENSG00000182919.10754.260302275.04870-1.5928063.3852061.57300HepG2PTBP1
C11orf54ENSG00000182919.102492.243801325.236100.9111018.1935016.84220HepG2PUF60
C11orf54ENSG00000182919.10900.081001406.70000-0.644209.024708.08440HepG2PUM1
C11orf54ENSG00000182919.10842.362501124.43110-0.416705.799104.96640HepG2PUS1
C11orf54ENSG00000182919.101675.394002464.12850-0.5566010.279809.18300HepG2QKI
C11orf54ENSG00000182919.10474.364801203.16510-1.3428012.2398010.84110HepG2RAVER1
C11orf54ENSG00000182919.10844.645901172.79490-0.473503.518002.56070HepG2RBM15
C11orf54ENSG00000182919.101142.115401401.27220-0.295002.928102.39940HepG2RBM22
C11orf54ENSG00000182919.101420.885302236.28150-0.6543010.993209.71050HepG2RBM25
C11orf54ENSG00000182919.101283.359202531.98660-0.9803032.9561031.52990HepG2NELFE
C11orf54ENSG00000182919.101890.724702358.06390-0.318704.973004.17670HepG2RECQL
C11orf54ENSG00000182919.101019.30970648.297300.652805.015104.13160HepG2RPLP0
C11orf54ENSG00000182919.101721.566801181.601300.542903.310602.27650HepG2RPS10
C11orf54ENSG00000182919.10396.38160764.73210-0.948108.391507.38960HepG2RPS19
C11orf54ENSG00000182919.101083.07440771.642900.489007.535106.54790HepG2SAFB2
C11orf54ENSG00000182919.10902.08080565.896100.672606.897905.82490HepG2SF3B1
C11orf54ENSG00000182919.101798.189802368.78300-0.397607.169606.28930HepG2SF3B4
C11orf54ENSG00000182919.101700.879101270.496400.420807.207206.15830HepG2SLBP
C11orf54ENSG00000182919.10528.56660899.86510-0.7676015.4195014.08930HepG2SMN1
C11orf54ENSG00000182919.10955.027501308.36170-0.454106.041805.16910HepG2SRSF5
C11orf54ENSG00000182919.10800.77220591.229400.437604.204503.37350HepG2SRSF7
C11orf54ENSG00000182919.101427.225602011.39580-0.4950010.729409.76620HepG2SRSF9
C11orf54ENSG00000182919.102337.402201374.174600.7662024.3552023.16990HepG2SSB
C11orf54ENSG00000182919.101129.397601488.06690-0.397904.840304.05860HepG2SUCLG1
C11orf54ENSG00000182919.101057.16010749.648300.495805.394404.10260HepG2SUPT6H
C11orf54ENSG00000182919.101326.26630742.151900.837509.653408.51730HepG2SUPV3L1
C11orf54ENSG00000182919.101482.062502222.13100-0.584306.386005.59430HepG2TAF15
C11orf54ENSG00000182919.101148.75070841.948900.448204.855304.23090HepG2TIAL1
C11orf54ENSG00000182919.10593.46920849.47900-0.517406.797505.98170HepG2TRIM56
C11orf54ENSG00000182919.101007.862501370.14820-0.443003.450902.51360HepG2UBE2L3
C11orf54ENSG00000182919.10306.87730438.44390-0.514702.773402.01270HepG2UCHL5
C11orf54ENSG00000182919.10617.052101211.57000-0.9734024.2709022.76060HepG2UTP3
C11orf54ENSG00000182919.10817.723501323.01780-0.694105.319803.87410HepG2XRCC6
C11orf54ENSG00000182919.101018.47700730.565800.479203.933203.07640HepG2XRN2
C11orf54ENSG00000182919.101278.63950726.922400.8146020.5465019.02770HepG2ZC3H8
C11orf54ENSG00000182919.10640.494301039.41300-0.6985011.6781010.60630K562AGGF1
C11orf54ENSG00000182919.10779.518901081.54820-0.472404.303703.48430K562AKAP8L
C11orf54ENSG00000182919.10149.81230223.21510-0.575302.540701.53880K562CCAR1
C11orf54ENSG00000182919.10946.42220742.898100.349203.131002.44410K562DDX47
C11orf54ENSG00000182919.10489.76820625.76300-0.353502.638701.85940K562EIF3G
C11orf54ENSG00000182919.10327.37400529.44690-0.693506.193704.97460K562EIF4A3
C11orf54ENSG00000182919.10259.23380476.77350-0.8791010.500108.12660K562EIF4B
C11orf54ENSG00000182919.10392.38510550.59850-0.488704.220003.49580K562FXR1
C11orf54ENSG00000182919.10123.30120415.16210-1.7515022.1066020.49960K562HNRNPC
C11orf54ENSG00000182919.10511.04950671.42640-0.393802.784801.72650K562HNRNPL
C11orf54ENSG00000182919.10967.48280587.156900.720407.777506.46050K562HSPD1
C11orf54ENSG00000182919.10523.45890766.32380-0.549903.626602.39030K562IGF2BP2
C11orf54ENSG00000182919.10596.50640805.80250-0.433902.617601.80010K562MAGOH
C11orf54ENSG00000182919.101055.001401285.84580-0.285502.204401.40870K562MBNL1
C11orf54ENSG00000182919.10438.68440837.78790-0.933404.768903.37220K562PABPN1
C11orf54ENSG00000182919.10247.52800372.22960-0.588603.068602.11060K562PSIP1
C11orf54ENSG00000182919.10550.90560782.85580-0.506903.492002.75660K562PTBP1
C11orf54ENSG00000182919.10622.800701072.65680-0.784309.160108.22080K562PUS1
C11orf54ENSG00000182919.10732.356401045.09460-0.513005.772804.94290K562RBM15
C11orf54ENSG00000182919.10508.05600750.89810-0.563603.177202.27050K562RBM22
C11orf54ENSG00000182919.10473.47160645.36590-0.446803.305001.83860K562RBM25
C11orf54ENSG00000182919.10708.04680333.534701.085905.938604.73510K562RPS19
C11orf54ENSG00000182919.10572.22030707.44200-0.306002.077201.33790K562SF3B4
C11orf54ENSG00000182919.10391.80830526.56490-0.426502.368101.40500K562SRSF4
C11orf54ENSG00000182919.10772.02880568.222200.442103.056501.61730K562SSRP1
C11orf54ENSG00000182919.10488.02000776.77390-0.670604.119603.25080K562TARDBP
C11orf54ENSG00000182919.10568.95210749.25910-0.397202.660001.85910K562TIA1
C11orf54ENSG00000182919.10893.32130681.035400.391303.516002.61080K562U2AF2
C11orf54ENSG00000182919.10734.23040543.639200.433503.824802.99210K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C11orf54 is not available on ENCORE database.





23 RBPs can affect the splicing of C11orf54 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC11orf54ENSG00000182919.10chr11+9347512893475232934748229347489493480462934806140.094000.003450.05645includedK562SRSF1
SEC11orf54ENSG00000182919.10chr11+934883759348855293487101934872039349048193490631-0.194000.000050.00177excludedK562SF3B4
SEC11orf54ENSG00000182919.10chr11+9348046293480614934748519347489493483511934836100.122000.000460.06907includedK562MATR3
SEC11orf54ENSG00000182919.10chr11+934883759348855293487101934872039349048193490631-0.097000.000110.00315excludedHepG2U2AF1
SEC11orf54ENSG00000182919.10chr11+934751289347530793474848934748949348046293480614-0.051000.000140.00371excludedHepG2U2AF1
SEC11orf54ENSG00000182919.10chr11+9347512893475232934748229347489493480462934806140.184000.000000.00000includedHepG2HNRNPK
SEC11orf54ENSG00000182919.10chr11+934883759348855293487101934872039349048193490631-0.104000.000000.00000excludedHepG2U2AF2
SEC11orf54ENSG00000182919.10chr11+934751289347526093474824934748949348046793480614-0.533000.003950.04394excludedHepG2U2AF2
SEC11orf54ENSG00000182919.10chr11+934883759348855293487101934872039349048193490631-0.103000.000540.00730excludedK562AQR
SEC11orf54ENSG00000182919.10chr11+934751289347523293474822934748949348046293480614-0.178000.000060.01682excludedK562DROSHA
SEC11orf54ENSG00000182919.10chr11+934904819349063193488375934885529349290793493025-0.200000.000360.03400excludedK562SUPV3L1
SEC11orf54ENSG00000182919.10chr11+9347512893475232934748229347489493480462934806140.275000.000000.00002includedK562PUS1
SEC11orf54ENSG00000182919.10chr11+934835119348361093480462934806149348684793486921-0.126000.000030.00094excludedK562PUS1
SEC11orf54ENSG00000182919.10chr11+9347512893475232934748229347489493480462934806140.105000.000320.05414includedHepG2RBM15
SEC11orf54ENSG00000182919.10chr11+9347512893475260934748249347489493480467934806140.202000.002860.05779includedHepG2SRSF1
SEC11orf54ENSG00000182919.10chr11+934883759348855293487101934872039349048193490631-0.077000.000070.00365excludedHepG2SF3A3
SEC11orf54ENSG00000182919.10chr11+9347512893475232934748229347489493480462934806140.163000.000030.00757includedK562SRSF7
SEC11orf54ENSG00000182919.10chr11+934883759348855293487101934872039349048193490631-0.078000.000600.03107excludedHepG2SF3B4
SEC11orf54ENSG00000182919.10chr11+934835119348361093480462934806149348684793486921-0.135000.000030.00221excludedK562UTP18
SEC11orf54ENSG00000182919.10chr11+9347512893475232934748229347489493480462934806140.083000.000000.00121includedHepG2TAF15
SEC11orf54ENSG00000182919.10chr11+934751289347523293474822934748949348046293480614-0.059000.002490.04163excludedK562U2AF2
SEC11orf54ENSG00000182919.10chr11+9347512893475232934748229347489493480462934806140.201000.000090.00591includedK562TARDBP
SEC11orf54ENSG00000182919.10chr11+934835119348361093480462934806149348684793486921-0.114000.000060.00290excludedK562RBM15
SEC11orf54ENSG00000182919.10chr11+934804629348061493474756934748949348351193483610-0.090000.004390.08405excludedK562AGGF1
SEC11orf54ENSG00000182919.10chr11+934883759348855293487101934872039349048193490631-0.093000.001840.06468excludedK562SF3B1
SEC11orf54ENSG00000182919.10chr11+9347512893475232934748229347489493480462934806140.191000.000000.00037includedK562HNRNPK
SEC11orf54ENSG00000182919.10chr11+9348837593488552934871019348720393490481934906310.069000.000680.03182includedHepG2HNRNPU
SEC11orf54ENSG00000182919.10chr11+9347512893475307934748489347489493480462934806140.261000.000000.00000includedHepG2HNRNPC
SEC11orf54ENSG00000182919.10chr11+934751289347526093474824934748949348046793480614-0.267000.000560.09567excludedHepG2PRPF4
SEC11orf54ENSG00000182919.10chr11+9348046793480614934748079347489493483511934836100.169000.002740.08554includedK562PTBP1
SEC11orf54ENSG00000182919.10chr11+9347512893475307934748489347489493480462934806140.373000.002160.03629includedK562HNRNPC
SEC11orf54ENSG00000182919.10chr11+934883759348855293487101934872039349048193490631-0.172000.003600.05368excludedK562HNRNPC
A5SSC11orf54ENSG00000182919.10chr11+9347485193475056934748519347489493480462934806140.051000.000020.00397longerHepG2TAF15
A5SSC11orf54ENSG00000182919.10chr11+9347475693474994934747569347489493480462934806140.053000.000010.00300longerHepG2QKI
MXEC11orf54ENSG00000182919.10chr11+9348837593488552934904819349058793487101934872039349290793493024-0.075000.000970.036422includedHepG2SF3B4
MXEC11orf54ENSG00000182919.10chr11+93480462934806149348351193483610934751289347523293486847934869210.085000.000230.008361includedHepG2HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C11orf54 is not avaliable on ENCORE database.