KHSRP

General Information

Gene Name       : KHSRP
Gene ID             : ENSG00000088247.17
Essential Gene : No

Functions

Localization(RBPImage: KHSRP)

Domains (AlphaFold: KHSRP)


Antibody Validation

 View validation images for all KHSRP antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KHSRPENSG00000088247.1774.2796.3685.31ENCSR000AEF
HepG2KHSRPENSG00000088247.17217.70124.38171.04ENCSR985KAT
K562KHSRPENSG00000088247.17208.20144.29176.25ENCSR000AEO

Assays

5 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 439ENCSR438GZQKHSRPK562ReleasedENCAB531WWSENCSR305IPT  
eCLIPeCLIP: 755ENCSR366DGXKHSRPHepG2ReleasedENCAB531WWSENCSR423QXH  
knockdown followed by RNA-seq KHSRP-BGKLV11-K562ENCSR561CBCKHSRPK562ReleasedENCSR129RWD   shRNAKD% = 92.0,90.2
knockdown followed by RNA-seq KHSRP-BGHLV12-HepG2ENCSR850CKUKHSRPHepG2ReleasedENCSR603TCV   shRNAKD% = 96.3,98.3
RNA Bind-n-SeqRBNS: KHSRPENCSR915BDYKHSRPcell-free sampleReleasedENCSR978BSJ  






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
KHSRP439K562ENCSR438GZQENCSR305IPTENCAB531WWSRN065PW1ReleasedENCODE3
KHSRP755HepG2ENCSR366DGXENCSR423QXHENCAB531WWSRN065PW1ReleasedENCODE4


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
KHSRPENCAB531WWSRN065PW1Released, ENCODE3Released, ENCODE3BGHLV12-45, Released, ENCODE3BGKLV11-23, Released, ENCODE3
KHSRP13398S1Released, ENCODE3Submitted, ENCORE2BGHLV12-45, Released, ENCODE3BGKLV11-23, Submitted, ENCORE2


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
KHSRPK562shRNAENCSR561CBCENCSR129RWDKHSRP-LV11-23,KHSRP-LV11-24Nontarget-LV11-1,nontarget-LV11-292.0,90.2ReleasedENCODE3
KHSRPHepG2shRNAENCSR850CKUENCSR603TCVKHSRP-BGHLV12-45,KHSRP-BGHLV12-46NT-BGHLV12-93,NT-BGHLV12-9496.3,98.3ReleasedENCODE3


  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
KHSRPKHSRPReleasedENCODE3


  Localization Image in HepG2  
    KHSRP: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Speckles
  • Nuclear release mitosis












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    KHSRPProduct_ID: RN065PW
    Lot_ID: 1
    Source: MBLI
    Target Name: KHSRP-human    		 HepG2_MBLI_RN056PW_001_KHSRP.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using KHSRP specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-KHSRP antibody (lanes under 'KHSRP').
    		 KHSRP_Secondary_Western.png<br>Caption: Western blot following shRNA against KHSRP in K562 and HepG2 whole cell lysate using KHSRP specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 2 and 3 are two different shRNAs against KHSRP. Lanes 5-7 follow the same pattern, but in HepG2. KHSRP protein appears as the green band, GAPDH serves as a control and appears in red.
    		 K562_MBLI_RN065PW_001_KHSRP.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using KHSRP specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 10% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-KHSRP antibody (lanes under 'KHSRP').
    		 KHSRP_Secondary_Western.png<br>Caption: Western blot following shRNA against KHSRP in K562 and HepG2 whole cell lysate using KHSRP specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 2 and 3 are two different shRNAs against KHSRP. Lanes 5-7 follow the same pattern, but in HepG2. KHSRP protein appears as the green band, GAPDH serves as a control and appears in red.
    KHSRPProduct_ID: 13398S
    Lot_ID: 1
    Source: Cell Signaling Technology
    Target Name: KHSRP-human    		 CST_13398S_1_KHSRP.png<br>Caption: IP-WB analysis of 13398S whole cell lysate using the KHSRP specific antibody, 13398S. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the KHSRP-specific antibody, 13398S. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
    		 KHSRP-K562-13398S.png<br>Caption: Western blot following shRNA against KHSRP in K562 whole cell lysate using KHSRP specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNA against KHSRP. KHSRP protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








    RNA Targets
    • KHSRP protein binds to 27,818 RNA regions.  




    • The binding motifs of KHSRP

      • Trulli

    Proteins bound to RNA
    • KHSRP RNA is bound by 48 proteins.  






    KHSRP protein has 27,818 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 27,818 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    KHSRPchr5132248638132248811-4.1866014.24414K562AFF4intron-Distal
    KHSRPchr888899768890006+4.527309.41035K562ERI13'-UTR,intron-Distal,intron-Proximal
    KHSRPchr3142096099142096185-4.1948614.75316K562XRN1intron-Distal
    KHSRPchr1235381326235381361-3.970033.24603K562ARID4Bintron-Distal
    KHSRPchrX1486997014870089-3.930233.89294K562FANCBintron-Distal
    KHSRPchr29660450196604547-3.311175.34873K562ANKRD36Cintron-Distal
    KHSRPchr133961600139616088+4.197408.34041K562NHLRC3intron-Distal
    KHSRPchr12112471290112471365-4.5632113.54317K562NAA25intron-Distal
    KHSRPchr156544406865444168-4.017773.89294K562CLPXintron-Distal
    KHSRPchr2203142762203142783+3.696296.41553K562NOP58intron-Proximal
    KHSRPchr119554543595545490+3.855033.42844K562CEP57intron-Distal
    KHSRPchr5132435528132435605+3.350265.78064K562HSPA4intron-Distal
    KHSRPchr19727072297270767+4.908625.87902HepG2PTBP2intron-Distal
    KHSRPchrX4478159744781692+3.037175.22769K562KDM6Aintron-Distal
    KHSRPchr118689575386895825+3.6846810.84776K562TMEM135intron-Distal
    KHSRPchr2165574712165574773-3.773205.59842HepG2COBLL1intron-Distal
    KHSRPchr7119420799119420850-5.495129.48201K562RP11-328J2.1intron-Distal
    KHSRPchrX7320538773205508+3.196295.01170K562JPXintron-Distal
    KHSRPchr26844084768440906-4.025553.71397K562PPP3R1, RP11-474G23.1intron-Distal
    KHSRPchr57464075074640771+3.855325.78064K562HMGCRintron-Distal
    KHSRPchr1200585778200585827-4.156364.10688K562KIF14intron-Distal
    KHSRPchr2128774172128774244-3.827803.45805K562SAP130intron-Distal,intron-Proximal
    KHSRPchr107051507370515100+3.056516.50271K562CCAR1intron-Proximal
    KHSRPchr155918588559185935-3.044973.48890K562SLTMintron-Distal,intron-Proximal
    KHSRPchr232622693262372-4.351464.37030K562TSSC1intron-Distal
    KHSRPchr1236966973236967035+3.316017.47124K562MTRintron-Distal,intron-Proximal
    KHSRPchr22051178420511879-4.7052511.34175K562PUM2intron-Distal
    KHSRPchr7110896228110896379-5.120999.19333HepG2IMMP2Lintron-Distal
    KHSRPchr13581435435814489+5.012429.39339K562ZMYM4intron-Distal
    KHSRPchr47658001976580134-4.704456.46110HepG2G3BP2intron-Distal,intron-Proximal
    KHSRPchr1224591976224592039-3.466995.32884K562WDR26intron-Distal,intron-Proximal
    KHSRPchr32568874825688909-4.8553218.79790K562TOP2Bintron-Distal
    KHSRPchr1154952785495310-3.5495116.12199K562HBG2, AC104389.28, HBE1intron-Distal
    KHSRPchr1227479577227479630-4.290805.44709K562CDC42BPAintron-Distal
    KHSRPchr1161726434161726547+3.037174.96160K562DUSP12intron-Distal,intron-Proximal
    KHSRPchr2100044972100045027-3.418093.90146K562REV1intron-Distal
    KHSRPchr6128771809128771905-4.245988.51210HepG2PTPRKintron-Distal
    KHSRPchr6168314026168314055+3.300907.31488HepG2MLLT4intron-Distal,intron-Proximal
    KHSRPchr2159412058159412137+4.424995.02888K562PKP4intron-Distal
    KHSRPchr201762590917626000-3.154683.29213HepG2RRBP1intron-Distal
    KHSRPchr119550227595502354-3.926416.19377K562FAM76B3'-UTR,intron-Distal
    KHSRPchr173759705137597112-3.296313.81210HepG2MED1intron-Distal
    KHSRPchr224995383449953909-3.089587.50863K562C22orf34intron-Distal
    KHSRPchr5130928706130928791-4.4579710.28391K562CTC-432M15.3, RAPGEF6intron-Distal
    KHSRPchr108967959489679683+3.816623.26999K562PTENintron-Distal
    KHSRPchr76437956164379664+3.283306.39618K562ZNF273intron-Distal
    KHSRPchr61364611813646157-3.907508.67954K562RANBP9intron-Distal
    KHSRPchr9127920661127920751-3.763023.06150K562PPP6Cintron-Distal,intron-Proximal
    KHSRPchr5134599609134599708+3.799513.25538K562CTC-349C3.1intron-Distal
    KHSRPchr22915262629152674+3.119493.31157HepG2WDR43intron-Proximal
    KHSRPchr6157264859157264919+4.453134.58794K562ARID1Bintron-Distal
    KHSRPchr119552855795528579+3.042233.29251K562CEP57intron-Distal
    KHSRPchr1184846150184846190-3.521323.90146K562FAM129Aintron-Distal
    KHSRPchrX4103212041032269+3.122344.76345K562USP9Xintron-Distal
    KHSRPchr12123795520123795583-3.975333.90026K562SBNO1intron-Distal,intron-Proximal
    KHSRPchr137997652179976567-3.390654.30679K562RBM26intron-Distal
    KHSRPchr156396161863961715-3.9722116.03139K562HERC1intron-Distal,intron-Proximal
    KHSRPchr147356874873568810+5.1318730.88446K562RBM25intron-Distal
    KHSRPchr143621565736215722-3.546824.03817HepG2RALGAPA1intron-Distal
    KHSRPchr89616608696166183+4.325025.19823K562PLEKHF2intron-Distal,intron-Proximal
    KHSRPchrX108934088108934202-3.2103415.67828HepG2ACSL4intron-Distal
    KHSRPchr3171830637171830740+3.4920813.30706HepG2FNDC3Bintron-Distal
    KHSRPchr2232325285232325349-3.724583.45805K562NCLintron-Distal,intron-Proximal
    KHSRPchr13146044931460497-3.012785.99525K562PUM1intron-Distal
    KHSRPchr1193107492193107569+4.431034.10688K562CDC73intron-Distal
    KHSRPchr1224185481224185567+3.8659612.80002K562RP11-504P24.4, RP11-504P24.3intron-Distal
    KHSRPchr4110418734110418871+3.391498.04002K562SEC24Bintron-Distal
    KHSRPchr107608263676082733+3.001243.01992K562ADKintron-Distal
    KHSRPchr13111543492111543589-3.231484.13575K562ANKRD10intron-Distal
    KHSRPchr1100336470100336483+4.771575.19823K562AGLintron-Proximal
    KHSRPchr89387715493877347-3.3246311.35550K562RP11-100L22.2intron-Distal
    KHSRPchr33343816433438252-4.2528320.95808K562UBP13'-UTR,intron-Distal,intron-Proximal
    KHSRPchr203432864234328680-4.1103348.16684K562RBM39intron-Distal,intron-Proximal
    KHSRPchr3137965641137965702+3.573485.38829K562ARMC83'-UTR,intron-Distal
    KHSRPchr155900408759004235-3.336999.48651K562ADAM10intron-Distal
    KHSRPchr156215909062159180-5.8321314.74977K562VPS13C3'-UTR,intron-Distal,intron-Proximal,polyA_site
    KHSRPchr68638761386387660-3.148633.80706K562SNHG5intron-Distal,intron-Proximal
    KHSRPchr145319025853190397+3.896566.59336K562PSMC6intron-Distal
    KHSRPchr13547843635478553-3.136046.17398K562ZMYM6intron-Distal
    KHSRPchr211638650516386558-3.370425.65663HepG2NRIP1intron-Distal
    KHSRPchr136072913360729293-4.153138.34041K562DIAPH3intron-Distal
    KHSRPchr3184612791184612917+4.087493.49011K562VPS8intron-Distal,intron-Proximal
    KHSRPchr32567244225672549-3.242497.47863K562TOP2Bintron-Distal,intron-Proximal
    KHSRPchr31755687417556991-3.816623.26999K562TBC1D5intron-Distal
    KHSRPchr1886243978624456+3.731485.14864K562RAB12intron-Distal
    KHSRPchr71114316411143254+4.381695.85485K562PHF143'-UTR,intron-Distal
    KHSRPchr33737785437377902+4.191834.76003K562GOLGA4intron-Distal
    KHSRPchr203102609931026145+3.884753.78824HepG2ASXL13'-UTR
    KHSRPchrX123171112123171230+3.417686.02054K562STAG2intron-Distal
    KHSRPchr132588323825883322+4.119494.02395HepG2NUPL1intron-Distal,intron-Proximal
    KHSRPchr23952048039520558-3.182843.07751K562MAP4K3intron-Distal,intron-Proximal
    KHSRPchr1895597319559799-4.445314.76003K562PPP4R1intron-Distal
    KHSRPchr2233564991233565051+3.793723.02234K562GIGYF2intron-Distal
    KHSRPchr2174980749174980855-3.881266.25598K562OLA1intron-Distal
    KHSRPchr2175055371175055481-4.067874.58794K562OLA1intron-Distal
    KHSRPchr6147526636147526670+3.9118626.12998K562STXBP5intron-Distal
    KHSRPchr5122131462122131608+3.023203.96958K562SNX2intron-Distal
    KHSRPchr1172542912172543031+5.2081914.21720K562SUCOintron-Distal,intron-Proximal
    KHSRPchr2101690913101690960-3.911973.20552HepG2TBC1D8intron-Distal
    KHSRPchr122834592628346011+4.309075.41654K562CCDC91intron-Distal




    48 proteins are bound to KHSRP RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr1964139856414061-3'-UTR,intron-Distal3.9937852.22194K562FAM120A
    chr1964136106413627-3'-UTR,intron-Distal,intron-Proximal3.6384419.94638K562FAM120A
    chr1964144746414499-3'-UTR,intron-Distal4.8743745.96269K562UPF1
    chr1964137276413769-3'-UTR,CDS,intron-Distal4.0629858.51808K562UPF1
    chr1964134996413570-3'-UTR,CDS,intron-Distal,intron-Proximal4.6187423.84940HepG2AKAP1
    chr1964212936421331-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.4535613.13696K562EFTUD2
    chr1964146826414693-3'-UTR,intron-Distal,intron-Proximal4.7463221.34217K562TIA1
    chr1964139246413985-3'-UTR,intron-Distal,intron-Proximal3.7965866.44183K562FAM120A
    chr1964139276413950-3'-UTR,intron-Distal,intron-Proximal3.1422014.11762K562DDX55
    chr1964136846413698-3'-UTR,intron-Distal3.693678.09117K562TIA1
    chr1964145606414587-3'-UTR,intron-Distal8.1508765.88964HepG2UPF1
    chr1964138636413915-3'-UTR,intron-Distal,intron-Proximal4.1391153.63731K562FAM120A
    chr1964139296413986-3'-UTR,intron-Distal,intron-Proximal3.4561717.24910HepG2FAM120A
    chr1964134686413491-3'-UTR,CDS,intron-Distal3.156178.91491K562PABPC4
    chr1964139266413960-3'-UTR,intron-Distal,intron-Proximal5.8755346.96231HepG2AKAP1
    chr1964146486414655-3'-UTR,intron-Distal,intron-Proximal3.41670400.00000K562UPF1
    chr1964144896414523-3'-UTR,intron-Distal4.0534324.35766K562CPSF6
    chr1964140186414048-3'-UTR,intron-Distal3.1378315.85158K562PABPC4
    chr1964140086414018-3'-UTR,intron-Distal3.306097.42890K562PABPC4
    chr1964149896415115-3'-UTR,CDS,intron-Distal,intron-Proximal3.6534641.84891K562PCBP1
    chr1964146116414627-3'-UTR,intron-Distal,intron-Proximal5.8779672.53179HepG2UPF1
    chr1964146576414682-3'-UTR,intron-Distal,intron-Proximal4.4374039.03996K562TIA1
    chr1964146636414698-3'-UTR,intron-Distal,intron-Proximal4.624843.24831HepG2TIA1
    chr1964141206414215-3'-UTR,CDS,intron-Distal3.6516211.26544HepG2HNRNPK
    chr1964145856414607-3'-UTR,intron-Distal4.922566.54449K562RBM15
    chr1964136746413712-3'-UTR,intron-Distal5.1759018.77527K562FAM120A
    chr1964139256413960-3'-UTR,intron-Distal,intron-Proximal7.0743076.35699HepG2UPF1
    chr1964145856414687-3'-UTR,intron-Distal,intron-Proximal3.7728176.22339K562FAM120A
    chr1964141216414180-3'-UTR,CDS,intron-Distal4.2701324.40412HepG2AKAP1
    chr1964148106414873-3'-UTR,intron-Distal5.9974156.25631HepG2UPF1
    chr1964134916413561-3'-UTR,CDS,intron-Distal,intron-Proximal4.02364400.00000K562UPF1
    chr1964145916414614-3'-UTR,intron-Distal5.1802961.67391K562UPF1
    chr1964145756414591-3'-UTR,intron-Distal5.85702400.00000K562UPF1
    chr1964145126414569-3'-UTR,intron-Distal3.5319041.13534K562FAM120A
    chr1964141136414185-3'-UTR,CDS,intron-Distal4.84594400.00000K562UPF1
    chr1964145296414596-3'-UTR,intron-Distal5.4587759.52328K562AKAP1
    chr1964146596414700-3'-UTR,intron-Distal,intron-Proximal3.096909.79501HepG2TIAL1
    chr1964145226414575-3'-UTR,intron-Distal4.345109.49854HepG2STAU2
    chr1964144716414510-3'-UTR,intron-Distal3.485899.36564K562RBM15
    chr1964144726414522-3'-UTR,intron-Distal3.8867010.00312HepG2STAU2
    chr1964146866414699-3'-UTR,intron-Distal,intron-Proximal3.9505117.09274HepG2AKAP1
    chr1964134636413491-3'-UTR,CDS,intron-Distal5.3182553.38186K562UPF1
    chr1964145396414575-3'-UTR,intron-Distal6.78134400.00000K562UPF1
    chr1964140526414061-3'-UTR,intron-Distal6.5478821.61956HepG2UPF1
    chr1964139606413991-3'-UTR,intron-Distal,intron-Proximal6.6705482.38797HepG2UPF1
    chr1964145176414535-3'-UTR,intron-Distal5.92739400.00000K562UPF1
    chr1964146846414699-3'-UTR,intron-Distal,intron-Proximal4.2087286.23603K562UPF1
    chr1964135856413619-3'-UTR,intron-Distal,intron-Proximal3.3406112.38640K562TIA1
    chr1964138686413912-3'-UTR,intron-Distal,intron-Proximal4.9712923.18844HepG2AKAP1
    chr1964212406421306-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.6751726.86066K562AQR
    chr1964150046415040-3'-UTR,CDS,intron-Distal4.6283215.92320HepG2AKAP1
    chr1964140046414064-3'-UTR,intron-Distal4.1186232.06109K562AKAP1
    chr1964138656413908-3'-UTR,intron-Distal,intron-Proximal5.22849400.00000K562UPF1
    chr1964145876414611-3'-UTR,intron-Distal6.6839963.97331HepG2UPF1
    chr1964150186415054-3'-UTR,CDS,intron-Distal,intron-Proximal3.4837115.64635K562RBM15
    chr1964146476414686-3'-UTR,intron-Distal,intron-Proximal4.9386566.49097HepG2AKAP1
    chr1964146866414699-3'-UTR,intron-Distal,intron-Proximal6.4056339.71706HepG2UPF1
    chr1964135876413610-3'-UTR,intron-Distal,intron-Proximal3.2846833.03132K562FAM120A
    chr1964135836413619-3'-UTR,intron-Distal,intron-Proximal3.4697362.44982K562UPF1
    chr1964145236414550-3'-UTR,intron-Distal3.6963710.33046K562CPSF6
    chr1964145816414626-3'-UTR,intron-Distal,intron-Proximal3.1051914.94462HepG2FAM120A
    chr1964137336413749-3'-UTR,CDS,intron-Distal3.268979.21035K562AKAP1
    chr1964141236414151-3'-UTR,CDS,intron-Distal3.323764.21354HepG2FAM120A
    chr1964136196413627-3'-UTR,intron-Distal,intron-Proximal4.4700847.22333K562UPF1
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    chr1964216526421661-intron-Distal,intron-Proximal4.5578224.55500K562AQR
    chr1964164296416468-intron-Distal,intron-Proximal4.390574.32014K562XRN2
    chr1964184056418467-intron-Distal,intron-Proximal4.6357711.41040K562EFTUD2
    chr1964213456421385-intron-Distal,intron-Proximal5.892237.66684HepG2SF3A3
    chr1964201766420216-intron-Distal,intron-Proximal5.2229113.11135K562SF3B4
    chr1964141576414167-intron-Distal6.0152985.44585HepG2PCBP2
    chr1964184166418464-intron-Distal,intron-Proximal3.221165.29427HepG2RBM22
    chr1964157486415783-intron-Distal,intron-Proximal3.888706.62272HepG2EFTUD2
    chr1964141396414256-intron-Distal3.9206322.79591HepG2PCBP1
    chr1964215796421621-intron-Distal,intron-Proximal4.856637.37772HepG2EFTUD2
    chr1964204826420534-intron-Distal,intron-Proximal4.761664.32536HepG2SF3B4
    chr1964223146422347-intron-Distal,intron-Proximal3.7598111.22333K562BUD13
    chr1964222346422286-intron-Distal,intron-Proximal3.9474813.11100K562AQR
    chr1964212496421282-intron-Distal,intron-Proximal3.758458.48964K562SF3B4
    chr1964222086422275-intron-Distal,intron-Proximal3.192769.34032K562PRPF8
    chr1964164266416470-intron-Distal,intron-Proximal5.731645.96317HepG2EFTUD2
    chr1964203596420410-intron-Distal,intron-Proximal3.1552810.17707K562SF3B4
    chr1964216176421626-intron-Distal,intron-Proximal5.6458226.03057K562AQR
    chr1964201996420221-intron-Distal,intron-Proximal4.4120113.04930HepG2SF3B4
    chr1964222496422279-intron-Distal,intron-Proximal3.630549.07913K562BUD13
    chr1964164206416472-intron-Distal,intron-Proximal5.033237.19196HepG2SF3B4
    chr1964192766419321-intron-Distal,intron-Proximal5.8104548.67146K562SF3B4
    chr1964159366415964-intron-Distal,intron-Proximal4.040483.31322HepG2SF3B4
    chr1964200406420084-intron-Distal,intron-Proximal3.6935911.23713K562AQR
    chr1964141816414220-intron-Distal5.4569759.83615HepG2PCBP2
    chr1964216046421615-intron-Distal,intron-Proximal4.432627.50107K562AQR
    chr1964197996419858-intron-Distal4.872849.50259HepG2EFTUD2
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein KHSRP and its RNA.



    Diffrential Expression
    • 3,259 differentially expressed genes after Knockdown/Knockout KHSRP protein.  





    • 100 RBPs can affect the levels of KHSRP.  







    3,259 differentially expressed genes after Knockdown/Knockout KHSRP protein :

    Only display 100 entries as example. Please click "View All" button to see all 3,259 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    DPM1ENSG00000000419.81457.195702202.23620-0.595804.709003.36720HepG2KHSRP
    SCYL3ENSG00000000457.9205.29510107.327400.935603.989202.76380HepG2KHSRP
    C1orf112ENSG00000000460.12152.26290268.70770-0.819503.774502.58450HepG2KHSRP
    GCLCENSG00000001084.61154.621801547.00460-0.422102.477801.53780HepG2KHSRP
    ANKIB1ENSG00000001629.51602.774501166.831200.457902.947701.90750HepG2KHSRP
    CYP51A1ENSG00000001630.118945.0163013474.59030-0.591105.550904.07920HepG2KHSRP
    SNX11ENSG00000002919.10323.54250494.01490-0.610603.259402.16010HepG2KHSRP
    CFLARENSG00000003402.152585.363601944.125900.411102.639801.66390HepG2KHSRP
    RBM5ENSG00000003756.122996.618102196.619900.448003.098602.02850HepG2KHSRP
    SLC7A2ENSG00000003989.126800.1148013142.65850-0.9506013.0532010.78490HepG2KHSRP
    POLDIP2ENSG00000004142.72019.935702743.45810-0.441702.945501.90600HepG2KHSRP
    PLXND1ENSG00000004399.83113.803201740.661200.838904.098702.85820HepG2KHSRP
    AK2ENSG00000004455.122916.693103904.32710-0.420702.827201.81450HepG2KHSRP
    FKBP4ENSG00000004478.51481.084701948.72490-0.395902.368701.45110HepG2KHSRP
    RBM6ENSG00000004534.104687.056102861.595100.711807.272805.56110HepG2KHSRP
    CAMKK1ENSG00000004660.10108.4600054.070101.004202.983701.93610HepG2KHSRP
    ARHGAP33ENSG00000004777.14212.17020104.473701.022003.559002.40340HepG2KHSRP
    SLC25A13ENSG00000004864.91308.866101755.28680-0.423402.531101.58150HepG2KHSRP
    SLC25A5ENSG00000005022.57398.9227010131.83240-0.453503.446102.31130HepG2KHSRP
    SPPL2BENSG00000005206.12808.42140390.764501.048702.406001.48170HepG2KHSRP
    WDR54ENSG00000005448.12120.32040206.74770-0.781003.048501.98830HepG2KHSRP
    FBXL3ENSG00000005812.6421.84520668.60880-0.664404.343003.05890HepG2KHSRP
    ITGALENSG00000005844.13145.94730247.65760-0.762903.268202.16610HepG2KHSRP
    ITGA3ENSG00000005884.1351.5107013.630301.918004.081402.84490HepG2KHSRP
    LAMP2ENSG00000005893.113464.508305767.14730-0.735207.705105.95110HepG2KHSRP
    OSBPL7ENSG00000006025.7252.20660136.518900.885404.169602.91710HepG2KHSRP
    TMEM98ENSG00000006042.72001.691102626.63550-0.392002.391101.46970HepG2KHSRP
    JHDM1DENSG00000006459.62757.178502020.307400.448503.078202.01240HepG2KHSRP
    ALDH3B1ENSG00000006534.11260.99600130.471801.000205.221603.80570HepG2KHSRP
    GGCTENSG00000006625.13263.16570545.16210-1.050704.652103.32040HepG2KHSRP
    COX10ENSG00000006695.6320.26700460.21810-0.523002.445301.51390HepG2KHSRP
    ADIPOR2ENSG00000006831.94187.518006478.50880-0.629605.950204.42590HepG2KHSRP
    MARK4ENSG00000007047.10707.371801029.65510-0.541602.827901.81480HepG2KHSRP
    TRAPPC6AENSG00000007255.6121.48530317.03420-1.383905.604104.12460HepG2KHSRP
    RHBDF1ENSG00000007384.11209.49340112.399700.898202.187001.30770HepG2KHSRP
    NADKENSG00000008130.111348.367201828.79390-0.439702.812401.80290HepG2KHSRP
    SYPL1ENSG00000008282.31477.688102096.08020-0.504403.558902.40340HepG2KHSRP
    SS18L2ENSG00000008324.6179.03180268.97810-0.587302.226801.33960HepG2KHSRP
    MGST1ENSG00000008394.81890.228702536.89120-0.424502.735501.73950HepG2KHSRP
    NFIXENSG00000008441.12535.90250387.082100.469202.187401.30790HepG2KHSRP
    ST3GAL1ENSG00000008513.101483.951302642.47970-0.832408.941007.04500HepG2KHSRP
    SEC62ENSG00000008952.122659.191803759.93400-0.499703.593202.42960HepG2KHSRP
    RPS20ENSG00000008988.510559.3470013891.12490-0.395602.700201.71220HepG2KHSRP
    UBE3CENSG00000009335.132172.244301397.861600.635905.467604.01110HepG2KHSRP
    REV3LENSG00000009413.111481.500401025.095400.531203.752602.56570HepG2KHSRP
    MLXIPLENSG00000009950.116601.029003131.974101.0755010.528908.49260HepG2KHSRP
    STARD3NLENSG00000010270.9662.62180908.36240-0.455102.491101.54890HepG2KHSRP
    CD9ENSG00000010278.7291.72780490.78380-0.750504.478203.17500HepG2KHSRP
    SEMA3GENSG00000010319.21333.68600895.084200.575204.037602.80720HepG2KHSRP
    NISCHENSG00000010322.111908.332201285.812500.569503.938302.72400HepG2KHSRP
    CD4ENSG00000010610.5227.33570133.306700.770003.260802.16110HepG2KHSRP
    FYNENSG00000010810.131058.41490756.439600.484502.978201.93210HepG2KHSRP
    NME2ENSG00000011052.17289.80690582.73240-1.007705.598004.11930HepG2KHSRP
    BTBD7ENSG00000011114.10890.43510635.230300.487102.825401.81300HepG2KHSRP
    RABGAP1ENSG00000011454.121143.677501520.42630-0.410802.410201.48500HepG2KHSRP
    MAP4K3ENSG00000011566.103230.383804548.21600-0.493603.788002.59590HepG2KHSRP
    SEMA3BENSG00000012171.133968.634701360.728401.544205.069403.67470HepG2KHSRP
    MBTPS2ENSG00000012174.7992.859301450.58110-0.547003.839802.63900HepG2KHSRP
    ELOVL5ENSG00000012660.93437.014404771.42420-0.473303.508602.36130HepG2KHSRP
    KDM5DENSG00000012817.111752.306701245.542600.492403.382802.25900HepG2KHSRP
    CALCOCO1ENSG00000012822.111861.374901052.514900.822408.169306.35990HepG2KHSRP
    PSMC4ENSG00000013275.31001.375601397.24210-0.480603.096002.02660HepG2KHSRP
    CLDN11ENSG00000013297.656.75290146.14300-1.364605.807704.30700HepG2KHSRP
    MVPENSG00000013364.141450.19560936.950100.630104.210602.95040HepG2KHSRP
    HEBP1ENSG00000013583.4376.80880576.30170-0.613003.563202.40660HepG2KHSRP
    MDH1ENSG00000014641.133264.659905175.53600-0.664806.371604.78670HepG2KHSRP
    COX15ENSG00000014919.8844.693701252.44500-0.568203.216802.12500HepG2KHSRP
    DPEP1ENSG00000015413.5436.50350238.014600.874805.538104.07060HepG2KHSRP
    NUDCD3ENSG00000015676.13826.897201129.24510-0.449602.615601.64360HepG2KHSRP
    CHDHENSG00000016391.65656.771903947.334400.519004.226802.96380HepG2KHSRP
    SRCIN1ENSG00000017373.11650.79390266.663701.287103.507102.36060HepG2KHSRP
    TTC27ENSG00000018699.7762.618001028.39720-0.431402.388501.46760HepG2KHSRP
    CYP24A1ENSG00000019186.5302.90090137.512601.139206.991305.31190HepG2KHSRP
    CD74ENSG00000019582.102886.946001773.346400.703006.663405.03220HepG2KHSRP
    MNAT1ENSG00000020426.6496.38800828.60070-0.739205.503904.04260HepG2KHSRP
    SAMD4AENSG00000020577.91277.06090798.030300.678205.365303.92450HepG2KHSRP
    PLEKHB1ENSG00000021300.91809.437601367.292800.404102.442201.51140HepG2KHSRP
    CYP3A43ENSG00000021461.1222.8962060.62350-1.404803.014501.96160HepG2KHSRP
    C8BENSG00000021852.8352.51220591.77480-0.747404.844903.48390HepG2KHSRP
    RTFDC1ENSG00000022277.81974.028902629.48450-0.413602.614501.64270HepG2KHSRP
    ZNF839ENSG00000022976.11353.84390217.038400.705103.577802.41800HepG2KHSRP
    BIRC3ENSG00000023445.9156.8620077.178401.023103.949402.73350HepG2KHSRP
    STRAPENSG00000023734.61921.317002554.16460-0.410802.612801.64210HepG2KHSRP
    ABCC2ENSG00000023839.614545.1110010185.094300.514004.348903.06400HepG2KHSRP
    GCLMENSG00000023909.5452.13040716.18060-0.663604.317203.03730HepG2KHSRP
    HSD17B6ENSG00000025423.742.86530125.86810-1.554006.320804.74450HepG2KHSRP
    B4GALT7ENSG00000027847.9178.98750302.68370-0.758003.762902.57460HepG2KHSRP
    BRD9ENSG00000028310.13574.26680332.290300.789205.321503.88970HepG2KHSRP
    BAK1ENSG00000030110.8512.34040763.42540-0.575403.536702.38520HepG2KHSRP
    SARSENSG00000031698.81800.406103099.94460-0.783908.143406.33930HepG2KHSRP
    MAP2K3ENSG00000034152.141013.887101581.81550-0.641703.297202.19090HepG2KHSRP
    PEX3ENSG00000034693.10329.52590509.79460-0.629503.479702.33880HepG2KHSRP
    ADSSENSG00000035687.9607.721201081.87300-0.832007.203105.50270HepG2KHSRP
    TIMP2ENSG00000035862.82441.54830754.018201.6950031.4365028.10910HepG2KHSRP
    RFC1ENSG00000035928.102428.875203355.22630-0.466103.260802.16110HepG2KHSRP
    TBC1D23ENSG00000036054.8880.435101435.94140-0.705705.726704.23300HepG2KHSRP
    VCANENSG00000038427.111819.31510508.599601.8387034.0106030.54490HepG2KHSRP
    PHLPP2ENSG00000040199.14998.57620623.151800.680205.164403.75420HepG2KHSRP
    PSMA4ENSG00000041357.111509.056302186.64050-0.535103.947802.73220HepG2KHSRP
    PHF15ENSG00000043143.16470.21620245.453200.937806.477904.87480HepG2KHSRP
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    100 RBPs can affect the gene expression of KHSRP :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    KHSRPENSG00000088247.112610.141801924.098200.439804.302303.08860HepG2ADAR
    KHSRPENSG00000088247.114033.500105178.12910-0.360407.534806.49230HepG2AUH
    KHSRPENSG00000088247.111563.596902272.44460-0.539402.837701.92760HepG2BCLAF1
    KHSRPENSG00000088247.113326.913404824.33110-0.536107.645406.71110HepG2BOP1
    KHSRPENSG00000088247.112140.222603771.80370-0.8175020.3709018.63590HepG2CALR
    KHSRPENSG00000088247.114172.216305669.02810-0.442303.216402.16090HepG2CCAR1
    KHSRPENSG00000088247.113092.172203873.35870-0.325007.541506.54620HepG2CKAP4
    KHSRPENSG00000088247.112153.376801531.893100.491202.699601.94460HepG2CNOT7
    KHSRPENSG00000088247.113401.448304428.93780-0.380803.840103.04240HepG2CPSF6
    KHSRPENSG00000088247.111459.496802112.79330-0.533703.860102.16010HepG2CSTF2T
    KHSRPENSG00000088247.112099.363603198.83000-0.6076014.5497013.30310HepG2CELF1
    KHSRPENSG00000088247.112030.227203439.09580-0.7604023.8781022.10010HepG2DAZAP1
    KHSRPENSG00000088247.111434.094702275.73000-0.6662010.090708.88350HepG2DDX21
    KHSRPENSG00000088247.111713.706702227.51480-0.378304.229303.08950HepG2DDX24
    KHSRPENSG00000088247.111534.570802406.00350-0.648803.474702.04730HepG2DDX27
    KHSRPENSG00000088247.111492.738602572.05440-0.785003.412002.56390HepG2DDX55
    KHSRPENSG00000088247.113506.381304359.21210-0.314102.643801.65210HepG2DDX5
    KHSRPENSG00000088247.112405.905901920.308600.325105.660304.77500HepG2DNAJC2
    KHSRPENSG00000088247.111374.667302096.06780-0.608605.217303.69710HepG2AGO1
    KHSRPENSG00000088247.112679.541603250.45060-0.278702.029401.32410HepG2EIF4G2
    KHSRPENSG00000088247.114296.867205945.43970-0.4685013.0980011.94880HepG2ETF1
    KHSRPENSG00000088247.111068.769102140.57400-1.002005.337603.61910HepG2FKBP4
    KHSRPENSG00000088247.112317.851702745.93170-0.244502.115601.42050HepG2FUBP3
    KHSRPENSG00000088247.114054.842502880.011000.493502.950002.23440HepG2FXR1
    KHSRPENSG00000088247.113802.256105020.37880-0.400903.383802.68050HepG2GPKOW
    KHSRPENSG00000088247.111886.296903160.83590-0.7447014.4910012.69900HepG2HNRNPA2B1
    KHSRPENSG00000088247.111769.144501265.909700.482803.398901.84240HepG2HNRNPAB
    KHSRPENSG00000088247.113659.454902706.638400.435002.006901.40490HepG2HNRNPK
    KHSRPENSG00000088247.113170.020104791.05510-0.595907.970606.96370HepG2HNRNPLL
    KHSRPENSG00000088247.112958.838402161.360000.453006.211205.33320HepG2HNRNPU
    KHSRPENSG00000088247.112160.244601460.787700.564303.949902.47870HepG2KHDRBS1
    KHSRPENSG00000088247.11720.238402730.74590-1.9227010.809308.76070HepG2KHSRP
    KHSRPENSG00000088247.114542.022502896.830000.648805.635004.75970HepG2MATR3
    KHSRPENSG00000088247.112523.411204675.41710-0.8897022.3967020.39640HepG2MSI2
    KHSRPENSG00000088247.112846.320403410.22340-0.260802.667601.91880HepG2NOL12
    KHSRPENSG00000088247.113179.601502057.504100.627904.290802.51390HepG2NOLC1
    KHSRPENSG00000088247.113484.858504248.30800-0.285802.469001.76170HepG2NSUN2
    KHSRPENSG00000088247.112363.277802735.08350-0.210802.005401.47550HepG2PCBP1
    KHSRPENSG00000088247.113191.125901927.766200.727007.673206.49310HepG2PPIL4
    KHSRPENSG00000088247.111510.633601982.90630-0.392502.027901.33210HepG2PRPF8
    KHSRPENSG00000088247.113147.212402783.169800.177201.965801.49060HepG2PTBP1
    KHSRPENSG00000088247.113984.042303455.971900.205004.138103.44420HepG2PUM1
    KHSRPENSG00000088247.113331.219403946.14120-0.244404.099003.37550HepG2PUS1
    KHSRPENSG00000088247.114892.680205672.63140-0.213402.084901.32730HepG2RBM15
    KHSRPENSG00000088247.112127.142704969.23430-1.2241058.2985056.53100HepG2RBM22
    KHSRPENSG00000088247.112024.434402735.48240-0.434305.346204.43730HepG2RBM25
    KHSRPENSG00000088247.113435.024502516.512900.448802.843901.83920HepG2RBM27
    KHSRPENSG00000088247.112945.077902043.530800.527104.064902.77470HepG2RCC2
    KHSRPENSG00000088247.114342.468403097.301000.4874012.6271011.62740HepG2NELFE
    KHSRPENSG00000088247.113974.873502884.895900.4623011.5878010.45690HepG2RECQL
    KHSRPENSG00000088247.112748.662804293.62800-0.6435010.290809.11650HepG2RPLP0
    KHSRPENSG00000088247.112116.390901539.318100.459202.987802.15840HepG2RPS3A
    KHSRPENSG00000088247.111239.690801961.38440-0.661904.063603.13270HepG2RRP9
    KHSRPENSG00000088247.112630.023401924.806200.4503010.685109.54640HepG2SAFB2
    KHSRPENSG00000088247.112153.178801449.506600.570804.685302.98570HepG2SART3
    KHSRPENSG00000088247.111783.280602430.36520-0.446602.285001.42760HepG2SERBP1
    KHSRPENSG00000088247.113641.907604742.10160-0.380804.058603.21870HepG2SF3B1
    KHSRPENSG00000088247.113727.206903121.781800.255603.452502.68320HepG2SLBP
    KHSRPENSG00000088247.113080.070902244.682300.4564013.5175012.26180HepG2SMN1
    KHSRPENSG00000088247.112208.642005276.45420-1.2564016.4412014.56190HepG2SNRNP70
    KHSRPENSG00000088247.113061.855105612.47350-0.8742047.7779046.36710HepG2SRFBP1
    KHSRPENSG00000088247.113356.206303024.370900.150101.779601.37650HepG2SRSF1
    KHSRPENSG00000088247.114482.162903214.476500.4795013.0283011.80400HepG2SRSF5
    KHSRPENSG00000088247.113208.474803915.85190-0.287404.599103.73550HepG2SRSF7
    KHSRPENSG00000088247.112129.113002460.56250-0.208702.484801.95530HepG2SRSF9
    KHSRPENSG00000088247.113473.760404872.79200-0.4883014.4103013.42420HepG2SSB
    KHSRPENSG00000088247.114908.772003655.601700.4252013.6426012.43300HepG2SUCLG1
    KHSRPENSG00000088247.113092.107503900.80100-0.335203.605502.54090HepG2SUPT6H
    KHSRPENSG00000088247.111247.922302560.08500-1.036706.363505.40020HepG2SUPV3L1
    KHSRPENSG00000088247.111980.128702718.66630-0.457307.469506.62320HepG2TAF15
    KHSRPENSG00000088247.113170.736904670.23870-0.558707.854006.71490HepG2TARDBP
    KHSRPENSG00000088247.111796.754602497.82530-0.475304.313603.27900HepG2TIA1
    KHSRPENSG00000088247.112791.287002118.931000.397507.604206.74680HepG2TRIM56
    KHSRPENSG00000088247.114348.684703180.691200.451104.719603.54520HepG2TUFM
    KHSRPENSG00000088247.114563.695905145.83650-0.173202.424101.76370HepG2UPF1
    KHSRPENSG00000088247.114197.418404968.08780-0.243204.032203.32860HepG2UTP3
    KHSRPENSG00000088247.112623.920704031.22550-0.6195022.6144021.02880HepG2ZC3H8
    KHSRPENSG00000088247.113784.016305659.42110-0.5807020.9726019.81110HepG2ZNF622
    KHSRPENSG00000088247.1110383.270707625.979600.4452013.7675012.60400K562AGGF1
    KHSRPENSG00000088247.114838.169605947.68970-0.297902.493601.66810K562BOP1
    KHSRPENSG00000088247.113637.901002808.290400.373302.990101.88800K562CSTF2
    KHSRPENSG00000088247.119277.9790012513.43750-0.431608.122606.48620K562CELF1
    KHSRPENSG00000088247.116103.080704193.164100.541404.737802.90560K562DHX30
    KHSRPENSG00000088247.115354.078003809.383400.491003.080502.01290K562EIF3A
    KHSRPENSG00000088247.113384.323702397.351300.497309.102807.66250K562EIF3G
    KHSRPENSG00000088247.113107.544903885.85130-0.322502.476301.41980K562FKBP4
    KHSRPENSG00000088247.111560.196702119.41470-0.441905.872803.81550K562FUS
    KHSRPENSG00000088247.115566.900304451.755900.322405.485104.67300K562FXR1
    KHSRPENSG00000088247.111375.304202039.94420-0.568803.331202.54180K562G3BP2
    KHSRPENSG00000088247.117736.989609092.10350-0.232802.231701.54950K562GRSF1
    KHSRPENSG00000088247.118121.244806956.516700.223202.647901.77350K562HNRNPU
    KHSRPENSG00000088247.116802.228409543.61930-0.488506.455605.25420K562HSPD1
    KHSRPENSG00000088247.114499.167203010.485200.579602.905101.84720K562IGF2BP2
    KHSRPENSG00000088247.113829.462603061.548900.322803.060401.79160K562IGF2BP3
    KHSRPENSG00000088247.11688.139803041.88520-2.1442060.3464055.97380K562KHSRP
    KHSRPENSG00000088247.113982.191505155.71590-0.372602.394201.53440K562KRR1
    KHSRPENSG00000088247.115066.920103162.609700.6799013.1774011.22870K562MAGOH
    KHSRPENSG00000088247.114307.024403155.997300.448506.337004.85900K562MATR3
    KHSRPENSG00000088247.1111109.757609433.815700.235802.566501.69680K562MBNL1
    KHSRPENSG00000088247.118800.6448010847.96970-0.301703.022201.84130K562MSI2
    KHSRPENSG00000088247.117721.301208746.16540-0.179802.781601.96940K562MTPAP
    KHSRPENSG00000088247.113335.821904274.62570-0.357802.596101.40390K562NCBP2
    KHSRPENSG00000088247.118515.110405878.118500.534602.312201.42350K562PABPN1
    KHSRPENSG00000088247.114435.782405570.40780-0.328602.460101.70760K562POLR2G
    KHSRPENSG00000088247.114548.318603072.770000.5657010.037308.82600K562PTBP1
    KHSRPENSG00000088247.119040.8975011810.80410-0.385606.318204.65050K562PUM1
    KHSRPENSG00000088247.1110717.142907869.347400.445505.588804.84900K562PUS1
    KHSRPENSG00000088247.119165.285807667.658400.257303.631102.96500K562RBM15
    KHSRPENSG00000088247.113898.926702872.049100.440904.036702.26030K562RBM34
    KHSRPENSG00000088247.114413.563003660.491300.269802.771501.78090K562RCC2
    KHSRPENSG00000088247.114762.310803469.973800.456605.889304.23260K562SRFBP1
    KHSRPENSG00000088247.115440.394603012.484100.8527022.1959020.19950K562SRSF1
    KHSRPENSG00000088247.114910.120903418.154600.522408.609306.61780K562SRSF4
    KHSRPENSG00000088247.113931.647302845.423200.466405.445403.88450K562SRSF5
    KHSRPENSG00000088247.114703.058403048.517900.625408.813307.45670K562TARDBP
    KHSRPENSG00000088247.114497.614202940.721900.6129011.777809.97970K562TIA1
    KHSRPENSG00000088247.114247.525802886.462500.557207.102605.15100K562TRA2A
    KHSRPENSG00000088247.117533.958608816.93480-0.226902.186401.40920K562WDR3
    KHSRPENSG00000088247.115926.049208386.15280-0.500907.394305.86690K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    831 alternative splicing events after Knockdown/Knockout KHSRP protein :

    Only display 100 entries as example. Please click "View All" button to see all 831 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SESPAG9ENSG00000008294.16chr17-4905322349053262490521314905230849054468490545820.063000.000290.09151includedK562KHSRP
    SELUC7L3ENSG00000108848.11chr17+4882865748828723488281124882821348829560488299460.344000.000110.05194includedK562KHSRP
    SEPPP2R3CENSG00000092020.6chr14-3558581535585943355797303557983535591107355915190.271000.000060.03465includedK562KHSRP
    SEGOLGA8AENSG00000175265.13chr15-3472081534720905346997763469993634727583347276720.083000.000260.08696includedK562KHSRP
    SETBPL1ENSG00000028839.5chr6+1342899921342900951342743611342745631343012191343013980.103000.000000.00139includedK562KHSRP
    SESGMS1ENSG00000198964.9chr10-5210014652100224520870375208708252103251521040060.131000.000050.02869includedK562KHSRP
    SELRCH3ENSG00000186001.8chr3+1975588301975589331975576401975577341975590671975591880.106000.000320.09751includedK562KHSRP
    SEEIF4HENSG00000106682.10chr7+7360457673604636736041517360424873609070736092080.101000.000010.01081includedK562KHSRP
    SEUAP1ENSG00000117143.9chr1+1625625211625625721625601121625603011625675811625676480.142000.000000.00000includedK562KHSRP
    SESREK1ENSG00000153914.11chr5+6545463665454760654492906544942465455046654551620.202000.000160.06256includedK562KHSRP
    SETRIM59ENSG00000213186.3chr3-1601665131601666041601564381601569741601675041601675530.250000.000060.03494includedK562KHSRP
    SESEC13ENSG00000157020.13chr3-1036082210361000103597331035977810362733103627700.399000.000040.02699includedK562KHSRP
    SEHBE1ENSG00000213931.1chr11-5299578529966652910285291386536700253671290.162000.000120.05395includedK562KHSRP
    SEUBE2BENSG00000119048.3chr5+1337240151337241041337100731337101541337259151337276830.065000.000330.09821includedK562KHSRP
    SERBM25ENSG00000119707.9chr14+7356700873567070735663747356645873569899735701860.078000.000270.08836includedK562KHSRP
    SEARHGAP11BENSG00000187951.6chr15+3092751130927610309272823092739130927689309278360.178000.000260.08696includedK562KHSRP
    SEMORF4L2ENSG00000123562.12chrX-1029396081029396571029334261029335791029400981029401880.198000.000000.00000includedK562KHSRP
    SEFNBP4ENSG00000109920.8chr11-4774728847747388477460234774633047752925477531130.140000.000020.01602includedK562KHSRP
    SEAGTRAPENSG00000177674.11chr1+1180618311806280118058591180589411807496118076020.314000.000020.01893includedK562KHSRP
    SEBCORENSG00000183337.12chrX-3993088939930943399302253993041239931601399344330.234000.000000.00026includedK562KHSRP
    SESPOPENSG00000121067.13chr17-4769798247698032476966694769674747699307476994290.070000.000100.04990includedK562KHSRP
    SESUGP2ENSG00000064607.12chr19-1910444619104549191016961910195819105174191052950.234000.000070.03722includedK562KHSRP
    SEC5orf51ENSG00000205765.4chr5+4190841041908496419078374190794441909847419099940.122000.000070.03722includedK562KHSRP
    SECUZD1ENSG00000138161.8chr10-1246181211246182011246151601246153021246390001246391460.206000.000010.00831includedK562KHSRP
    SEATG7ENSG00000197548.8chr3+1134083511340890113401591134032911348416113485340.234000.000130.05754includedK562KHSRP
    SEZKSCAN8ENSG00000198315.6chr6+2811210828112202281097152810980728116093281166020.164000.000010.01205includedK562KHSRP
    SETIA1ENSG00000116001.11chr2-7045547570455594704548667045495470456190704562230.197000.000340.09995includedK562KHSRP
    SETIA1ENSG00000116001.11chr2-7045245970452525704516857045176170454866704549710.194000.000000.00010includedK562KHSRP
    SEEDEM1ENSG00000134109.6chr3+5251859525193352497775249948525280452529010.208000.000290.09178includedK562KHSRP
    SEHN1LENSG00000206053.8chr16+1733509173359317282771728357173543917355880.073000.000080.03983includedK562KHSRP
    SEHSF2ENSG00000025156.8chr6+1227490471227491011227447251227448311227525741227526590.264000.000140.05900includedK562KHSRP
    SESRSF2ENSG00000161547.10chr17-7473185374731957747302287473124074732235747326370.061000.000040.02699includedK562KHSRP
    SENAP1L4ENSG00000205531.8chr11-2978741297880229769732976996297962829797740.116000.000000.00001includedK562KHSRP
    SEINSIG1ENSG00000186480.8chr7+1550955341550956051550944561550945561550999501551006700.114000.000000.00000includedK562KHSRP
    SEEPS15L1ENSG00000127527.9chr19-1648793216488065164725891647279516495939164960220.363000.000010.00678includedK562KHSRP
    SEZNF616ENSG00000204611.2chr19-5262561252625710526180425262027752627175526273020.475000.000010.01277includedK562KHSRP
    SEPRRC2BENSG00000130723.13chr9+1343618671343619281343614711343615691343625531343626810.220000.000000.00362includedK562KHSRP
    SECD46ENSG00000117335.14chr1+2079409512079409962079403572079405402079411232079411680.069000.000160.06184includedK562KHSRP
    SECD46ENSG00000117335.14chr1+2079635972079636902079589632079590272079668632079688580.165000.000000.00011includedK562KHSRP
    SEANKLE2ENSG00000176915.10chr12-1333105811333106571333068181333068561333109701333110820.112000.000040.02666includedK562KHSRP
    SETHOC2ENSG00000125676.15chrX-1227574941227575601227569551227571341227576371227578220.113000.000000.00151includedK562KHSRP
    SEPRKCQ-AS1ENSG00000237943.2chr10+6624099662416366223866622889662563766259900.273000.000020.01497includedK562KHSRP
    SERBM14ENSG00000239306.4chr11+6639137166391439663841006638452866391684663920640.175000.000010.00687includedK562KHSRP
    SEKLHL18ENSG00000114648.7chr3+4732870947328838473244484732458447361142473612730.365000.000000.00358includedK562KHSRP
    SETHOC5ENSG00000100296.9chr22-2994671629946832299450402994514729949659299502430.170000.000120.05423includedK562KHSRP
    SETUBE1ENSG00000074935.9chr6-1124068611124069461124053911124054491124077581124078110.155000.000170.06626includedK562KHSRP
    SEEIF4A2ENSG00000156976.10chr3+1865060981865062091865055911865056711865069131865070800.081000.000000.00001includedK562KHSRP
    SEZMYND8ENSG00000101040.15chr20-4584128645841370458394054583954245848908458489750.325000.000000.00000includedK562KHSRP
    SESLC7A11ENSG00000151012.9chr4-1391034501391035471391017941391019441391043551391044590.204000.000210.07459includedK562KHSRP
    SEKIAA0232ENSG00000170871.7chr4+6867918686799068626276865910687330068734090.390000.000000.00000includedK562KHSRP
    SESCAIENSG00000173611.13chr9-1278282681278283371278181541278182861279049111279049560.548000.000010.01277includedK562KHSRP
    SEC1orf63ENSG00000117616.13chr1-2557094425570989255700402557012425571640255717920.372000.000000.00000includedK562KHSRP
    SEDONSONENSG00000159147.13chr21-3495579334955972349542563495436134956895349570740.189000.000040.02666includedK562KHSRP
    SEPNISRENSG00000132424.10chr6-9985170499851758998504159985058699852478998525780.234000.000000.00021includedK562KHSRP
    SECLK4ENSG00000113240.8chr5-1780468381780476741780455561780457791780502561780504170.299000.000050.02745includedK562KHSRP
    SERCC1ENSG00000180198.11chr1+2885703428857127288563692885645128858314288585020.075000.000180.06626includedK562KHSRP
    SESAP30BPENSG00000161526.10chr17+7366789573667943736645957366470573689519736895620.103000.000210.07459includedK562KHSRP
    SECENPKENSG00000123219.8chr5-6482474564824844648242786482440564824943648250260.118000.000000.00480includedK562KHSRP
    SESART3ENSG00000075856.7chr12-1089365451089366271089327091089328651089368031089369280.068000.000050.03010includedK562KHSRP
    SEZNF512ENSG00000243943.5chr2+2784251627842595278403392784043827844019278460820.059000.000030.02191includedK562KHSRP
    SETARBP1ENSG00000059588.5chr1-2345630622345631342345614182345615392345633212345635120.236000.000090.04277includedK562KHSRP
    SESERPINB6ENSG00000124570.13chr6-2969012296914729594012959576297135029714400.327000.000300.09381includedK562KHSRP
    SEPDK1ENSG00000152256.9chr2+1734334681734335451734315831734316611734354531734355520.169000.000000.00005includedK562KHSRP
    SEAIG1ENSG00000146416.12chr6+1435085241435086731434862181434863201435087651435089510.078000.000250.08496includedK562KHSRP
    SEKPNA6ENSG00000025800.9chr1+3260535532605465325736383257373532620188326203220.069000.000190.06933includedK562KHSRP
    SETIAL1ENSG00000151923.13chr10-1213363581213364171213361221213362621213365911213367260.071000.000040.02562includedK562KHSRP
    SEZMYM4ENSG00000146463.7chr1+3586265235862724358621523586227135862977358630630.060000.000000.00310includedK562KHSRP
    SECENPEENSG00000138778.7chr4-1040846351040847101040842931040844131040958921040960600.220000.000130.05538includedK562KHSRP
    SERSRC2ENSG00000111011.13chr12-1230050501230051281230033851230035761230059311230059750.123000.000000.00000includedK562KHSRP
    SESS18ENSG00000141380.9chr18-2361579423615887236149682361509123618518236186230.206000.000130.05538includedK562KHSRP
    SEELP2ENSG00000134759.9chr18+3371875733718835337180573371838933721099337211640.098000.000310.09617includedK562KHSRP
    SEBCAS2ENSG00000116752.5chr1-1151193081151193791151182101151183721151239191151240120.070000.000260.08747includedK562KHSRP
    SEVEGFAENSG00000112715.16chr6+4374847643748540437466254374665543749692437498240.105000.000040.02733includedK562KHSRP
    SEZNF121ENSG00000197961.7chr19-9678323967838196764039677785967877096788510.081000.000080.04177includedK562KHSRP
    SETSEN15ENSG00000198860.7chr1+184041290184041432184023861184023997184041960184043346-0.168000.000000.00129excludedK562KHSRP
    SEVWDEENSG00000146530.7chr7-124146351241485312414314124143881241740112417546-0.119000.000000.00026excludedK562KHSRP
    SEVWDEENSG00000146530.7chr7-123853641238558612383999123840951239119812391339-0.134000.000000.00010excludedK562KHSRP
    SEDEPDC1ENSG00000024526.12chr1-689477286894858068947122689472956894963268949773-0.230000.000060.03243excludedK562KHSRP
    SEDECR1ENSG00000104325.2chr8+910293519102955491013632910137899103113691031194-0.101000.000130.05538excludedK562KHSRP
    SETOP3BENSG00000100038.15chr22-223253512232543322324581223247782232624822326323-0.209000.000190.06801excludedK562KHSRP
    SEHNRNPA2B1ENSG00000122566.16chr7-262374502623748626237241262373522624019126240366-0.058000.000060.03129excludedK562KHSRP
    SESRSF6ENSG00000124193.10chr20+420877924208806042087000420871494208841042088535-0.261000.000030.02402excludedK562KHSRP
    SEMYBENSG00000118513.14chr6+135511264135511485135510928135511021135513461135513696-0.053000.000000.00139excludedK562KHSRP
    SECCAR2ENSG00000158941.12chr8+224705292247064922465481224655782247160422471827-0.146000.000050.02745excludedK562KHSRP
    SEFRG1ENSG00000109536.7chr4+190876191190876306190873316190873442190878552190878657-0.109000.000150.06184excludedK562KHSRP
    SERBM4ENSG00000173933.15chr11+664109206641161166407170664075946641349766413938-0.161000.000260.08696excludedK562KHSRP
    SEFDPSENSG00000160752.10chr1+155279543155279756155278749155278867155279833155279975-0.137000.000280.08960excludedK562KHSRP
    SEOTUD3ENSG00000169914.5chr1+202329242023310920231383202314802023406220239438-0.299000.000160.06184excludedK562KHSRP
    SETLK1ENSG00000198586.9chr2-171879381171879639171871360171871458171884848171884915-0.081000.000180.06626excludedK562KHSRP
    SEHMGCRENSG00000113161.11chr5+746508807465103974650327746505227465118974651347-0.117000.000000.00000excludedK562KHSRP
    SESKA2ENSG00000182628.8chr17-571966795719685657189250571897065720864157208728-0.181000.000040.02562excludedK562KHSRP
    SESETD8ENSG00000183955.8chr12+123889185123889298123888119123888179123889430123889621-0.059000.000010.01147excludedK562KHSRP
    SEFBXO42ENSG00000037637.6chr1-165874951658766116583100165832541662127716621412-0.074000.000300.09381excludedK562KHSRP
    SEZMYND8ENSG00000101040.15chr20-458397814583991845837858458395424584128645841370-0.059000.000030.02260excludedK562KHSRP
    SEMSMO1ENSG00000052802.8chr4+166254491166254777166248774166248916166258940166259089-0.113000.000000.00010excludedK562KHSRP
    SERABGGTBENSG00000137955.11chr1+762556367625574276254824762550417625583676255959-0.106000.000330.09821excludedK562KHSRP
    SEHLTFENSG00000071794.11chr3-148759276148759455148757817148757943148759952148760077-0.056000.000120.05395excludedK562KHSRP
    SEUSPL1ENSG00000132952.7chr13+311952093119537631191919311921933119590031196029-0.410000.000110.05194excludedK562KHSRP
    SEP4HA1ENSG00000122884.8chr10-748108477481100774806682748068597481310874813348-0.051000.000190.06969excludedK562KHSRP
    SECNOT2ENSG00000111596.7chr12+707305087073075470729217707293437073116870731293-0.069000.000010.00642excludedK562KHSRP





    7 RBPs can affect the splicing of KHSRP :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEKHSRPENSG00000088247.11chr19-642008364201556419213641927164204326420482-0.071000.000000.00000excludedK562PUS1
    SEKHSRPENSG00000088247.11chr19-642235064224476421660642169964244636424805-0.058000.000950.09297excludedHepG2KHSRP
    A3SSKHSRPENSG00000088247.11chr19-6415818641606064158186415907641630864164180.083000.000000.00000longerK562AQR
    A3SSKHSRPENSG00000088247.11chr19-6422350642257264223506422447642446364245400.137000.000000.00000longerK562AQR
    A5SSKHSRPENSG00000088247.11chr19-641554464157456415619641574564153906415468-0.091000.000820.09768shorterK562TARDBP
    A5SSKHSRPENSG00000088247.11chr19-641554464157456415619641574564153906415468-0.174000.000000.00008shorterK562SRSF1
    RIKHSRPENSG00000088247.11chr19-6415226641546364152266415312641539064154630.088000.000000.00000includedK562PUS1
    RIKHSRPENSG00000088247.11chr19-6415226641546364152266415312641539064154630.190000.000000.00000includedK562AQR
    MXEKHSRPENSG00000088247.11chr19-64212886421328642166064216996420432642048264223506422447-0.220000.011640.097312includedK562DROSHA
    MXEKHSRPENSG00000088247.11chr19-64204326420482642128864213286420083642015564216606421699-0.281000.005290.056902includedK562DROSHA
    MXEKHSRPENSG00000088247.11chr19-64204326420482642235064224476419213641927164244636424805-0.086000.000000.000012includedK562PUS1
    MXEKHSRPENSG00000088247.11chr19-64158186415907641630864164186415619641574564165006416661-0.129000.002120.040942includedK562PRPF8

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The KHSRP protein affects to its own RNA splicing after knockdown/knockout.

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEKHSRPENSG00000088247.11chr19-642235064224476421660642169964244636424805-0.058000.000950.09297excludedHepG2KHSRP