TRIM59

General Information

Gene Name       : TRIM59
Gene ID             : ENSG00000213186.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRIM59)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRIM59ENSG00000213186.722.9720.0721.52ENCSR000AEF
HepG2TRIM59ENSG00000213186.71.081.151.11ENCSR985KAT
K562TRIM59ENSG00000213186.721.5223.9122.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRIM59 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRIM59 RNA is bound by 10 proteins.  







eCLIP assay for TRIM59 is not avaliable on ENCORE database.





10 proteins are bound to TRIM59 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3160153350160153402-3'-UTR,intron-Distal3.398133.10770K562RBFOX2
chr3160153401160153462-3'-UTR,intron-Distal3.0705211.95405K562KHSRP
chr3160154523160154592-3'-UTR,intron-Distal3.800533.81071K562HNRNPC
chr3160153342160153441-3'-UTR,intron-Distal4.385115.23751K562TIA1
chr3160167447160167505-5'-UTR,CDS,intron-Distal,intron-Proximal3.743364.00320K562AQR
chr3160167504160167567-5'-UTR,intron-Distal,intron-Proximal4.185966.42503K562DDX3X
chr3160156688160156732-CDS,intron-Distal,intron-Proximal4.025334.80676K562RBM15
chr3160156493160156552-CDS,intron-Distal,intron-Proximal3.004593.25364K562RBM15
chr3160156069160156141-CDS,intron-Distal4.310125.48535K562GRWD1
chr3160156652160156739-CDS,intron-Distal,intron-Proximal3.073358.52200K562ZNF622
chr3160156778160156846-CDS,intron-Distal,intron-Proximal3.144086.56546K562RBM15
chr3160156007160156069-CDS,intron-Distal,intron-Proximal3.780343.05298K562GRWD1
chr3160156882160156927-CDS,intron-Distal5.413758.53052K562RBM15
chr3160167129160167213-intron-Distal3.380633.77708K562GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRIM59 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRIM59 is not available on ENCORE database.

  • 73 RBPs can affect the levels of TRIM59.  








The Knockdown/knockout RNA-Seq assay for TRIM59 is not available on ENCORE database.





73 RBPs can affect the gene expression of TRIM59 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRIM59ENSG00000213186.317.2133040.20090-1.223701.938601.43040HepG2BOP1
TRIM59ENSG00000213186.331.4846061.00940-0.954401.817601.32460HepG2EIF2S1
TRIM59ENSG00000213186.343.2507085.49070-0.983002.696401.89170HepG2EIF4G2
TRIM59ENSG00000213186.330.8574061.92490-1.004901.991501.39240HepG2HNRNPC
TRIM59ENSG00000213186.321.4409062.83710-1.551304.787203.84490HepG2ILF2
TRIM59ENSG00000213186.350.7188089.69730-0.822502.078601.36640HepG2LARP4
TRIM59ENSG00000213186.310.6843035.40300-1.728402.509601.79590HepG2NSUN2
TRIM59ENSG00000213186.322.2172050.52020-1.185202.213301.43520HepG2PABPC1
TRIM59ENSG00000213186.327.5322062.39070-1.180202.526301.83350HepG2PABPC4
TRIM59ENSG00000213186.328.7874054.86800-0.930502.002701.36670HepG2PPIL4
TRIM59ENSG00000213186.329.2980058.83930-1.006002.009201.41610HepG2RPLP0
TRIM59ENSG00000213186.327.2467054.78510-1.007702.189901.60500HepG2SAFB2
TRIM59ENSG00000213186.363.7896034.117800.902701.888101.32830HepG2SF3A3
TRIM59ENSG00000213186.329.0707082.10430-1.497905.167604.25710HepG2SLBP
TRIM59ENSG00000213186.333.4100063.89290-0.935402.222701.63610HepG2SMN1
TRIM59ENSG00000213186.3104.3255064.357800.696801.766901.36520HepG2SRSF1
TRIM59ENSG00000213186.351.1824084.54420-0.724101.865901.33810HepG2SRSF5
TRIM59ENSG00000213186.357.4526096.62240-0.750002.245401.77260HepG2SSB
TRIM59ENSG00000213186.317.5557059.79020-1.768004.993104.36200HepG2TIAL1
TRIM59ENSG00000213186.325.4804060.30740-1.242903.342502.73550HepG2TRIM56
TRIM59ENSG00000213186.3112.9592042.500001.410204.679903.02680HepG2XRCC5
TRIM59ENSG00000213186.312.1211033.27720-1.457002.452601.92870HepG2ZNF622
TRIM59ENSG00000213186.33619.629601580.130101.1957063.3045060.66500K562AGGF1
TRIM59ENSG00000213186.33161.799801644.230000.9432019.9777017.90590K562AKAP8L
TRIM59ENSG00000213186.32630.923401725.255400.608706.401704.94150K562ATP5C1
TRIM59ENSG00000213186.31412.514801053.957100.422304.421202.50080K562CEBPZ
TRIM59ENSG00000213186.31136.04450910.978900.318402.544701.79160K562CPSF6
TRIM59ENSG00000213186.34338.128203107.443300.481207.692506.09140K562CELF1
TRIM59ENSG00000213186.32563.427101853.927700.467405.413203.30330K562DDX19B
TRIM59ENSG00000213186.31486.298101211.448600.294902.870801.63510K562DDX21
TRIM59ENSG00000213186.31137.195501870.15320-0.7177017.7231016.20130K562DDX47
TRIM59ENSG00000213186.3924.543001246.76810-0.431405.424004.46690K562EIF2S2
TRIM59ENSG00000213186.3870.952701138.13600-0.386003.917702.97910K562EIF3G
TRIM59ENSG00000213186.31116.589001798.76090-0.687905.025103.91780K562EIF4A3
TRIM59ENSG00000213186.31369.386701006.211700.444503.994302.35120K562FUS
TRIM59ENSG00000213186.3947.284601870.65070-0.9817011.2294010.09660K562FXR1
TRIM59ENSG00000213186.32518.845201862.003400.435805.146503.11570K562G3BP1
TRIM59ENSG00000213186.32980.666301788.899500.736503.768502.91420K562G3BP2
TRIM59ENSG00000213186.31493.048401137.272900.392604.531703.07620K562GLRX3
TRIM59ENSG00000213186.31376.555401661.49350-0.271402.103301.43810K562GRSF1
TRIM59ENSG00000213186.33192.680401075.152701.5701013.056809.82030K562HNRNPA2B1
TRIM59ENSG00000213186.3686.661201020.05540-0.571006.067405.21660K562HNRNPC
TRIM59ENSG00000213186.33552.105101744.823401.025505.269304.05490K562KIF1C
TRIM59ENSG00000213186.31290.062602046.87070-0.666008.519607.00420K562MAGOH
TRIM59ENSG00000213186.33381.237702693.340100.328102.791001.65670K562MSI2
TRIM59ENSG00000213186.31522.873001195.693800.348804.383703.38620K562MTPAP
TRIM59ENSG00000213186.33193.751301370.084601.220908.394706.52940K562NAA15
TRIM59ENSG00000213186.31769.955601328.525000.413808.703607.48370K562NSUN2
TRIM59ENSG00000213186.33669.74430939.762001.9652011.356108.87050K562PABPN1
TRIM59ENSG00000213186.3834.772101075.97660-0.366202.385701.68790K562PRPF8
TRIM59ENSG00000213186.31380.370301988.60420-0.526706.455505.47650K562PTBP1
TRIM59ENSG00000213186.32078.219402756.96830-0.407704.681203.62320K562PUF60
TRIM59ENSG00000213186.37157.586401630.389402.1342092.2609089.03660K562PUS1
TRIM59ENSG00000213186.32798.504001706.777200.713305.059503.04690K562RAVER1
TRIM59ENSG00000213186.33722.751901588.764101.2284020.2242018.57850K562RBM15
TRIM59ENSG00000213186.31496.249401907.26420-0.350202.417001.63470K562RBM22
TRIM59ENSG00000213186.32443.349901696.544600.526207.425405.14140K562RBM25
TRIM59ENSG00000213186.31397.759701858.88940-0.411303.478801.86160K562RBM34
TRIM59ENSG00000213186.3609.94650834.46640-0.452203.873102.69940K562RCC2
TRIM59ENSG00000213186.31327.915002006.98990-0.595905.978004.28790K562NELFE
TRIM59ENSG00000213186.3518.483701096.07090-1.0800013.6070011.77260K562RPS19
TRIM59ENSG00000213186.31037.554202328.77400-1.1664021.9666019.06520K562RPS3
TRIM59ENSG00000213186.3714.58370924.50280-0.371602.803801.71380K562SAFB
TRIM59ENSG00000213186.31530.812401310.912500.223602.117901.39750K562SF3A3
TRIM59ENSG00000213186.31414.680001859.91840-0.394804.705603.57940K562SF3B4
TRIM59ENSG00000213186.32565.85040987.172201.378008.483505.88590K562SNRNP200
TRIM59ENSG00000213186.31387.842101949.40680-0.490206.344505.28470K562SRSF1
TRIM59ENSG00000213186.31552.054102248.42450-0.534707.086305.28010K562SRSF4
TRIM59ENSG00000213186.31580.845901081.201800.548008.875206.77970K562SRSF7
TRIM59ENSG00000213186.31538.840301174.008600.390304.986603.18590K562SSB
TRIM59ENSG00000213186.33006.695801210.074001.313006.519003.40830K562SUGP2
TRIM59ENSG00000213186.32908.802801180.386801.301103.329301.71550K562SUPT6H
TRIM59ENSG00000213186.3831.951701040.65510-0.322902.625801.82880K562SYNCRIP
TRIM59ENSG00000213186.31320.257701973.11730-0.579706.706705.56330K562TARDBP
TRIM59ENSG00000213186.31454.437501903.24440-0.388003.645602.68660K562TIA1
TRIM59ENSG00000213186.31754.562001205.348700.541603.495302.51350K562WDR3
TRIM59ENSG00000213186.32480.623101161.291901.094904.434102.20730K562YTHDC2
TRIM59ENSG00000213186.33614.701202540.948200.508405.611104.31030K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRIM59 is not available on ENCORE database.





17 RBPs can affect the splicing of TRIM59 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRIM59ENSG00000213186.3chr3-1601665131601665831601566361601569741601675041601676170.294000.000420.01029includedK562SRSF1
SETRIM59ENSG00000213186.3chr3-160166513160166583160156636160156974160167504160167617-0.343000.000000.00015excludedK562WDR3
SETRIM59ENSG00000213186.3chr3-160166513160166583160156636160156974160167504160167617-0.248000.000040.00237excludedK562AKAP8L
SETRIM59ENSG00000213186.3chr3-1601665131601665831601566361601569741601675041601676170.268000.000010.00167includedK562XRCC6
SETRIM59ENSG00000213186.3chr3-1601665131601665831601566361601569741601675041601676170.556000.000000.00000includedK562FXR1
SETRIM59ENSG00000213186.3chr3-160166513160166583160156636160156974160167504160167617-0.410000.000000.00000excludedK562PUS1
SETRIM59ENSG00000213186.3chr3-160166513160166583160156636160156974160167504160167617-0.256000.000030.00899excludedK562NSUN2
SETRIM59ENSG00000213186.3chr3-1601665131601666041601564381601569741601675041601675530.250000.000060.03494includedK562KHSRP
SETRIM59ENSG00000213186.3chr3-160166513160166583160156636160156974160167504160167617-0.328000.000020.00775excludedK562LARP4
SETRIM59ENSG00000213186.3chr3-160166513160166583160156636160156974160167504160167617-0.245000.000120.08897excludedK562DDX21
SETRIM59ENSG00000213186.3chr3-160166513160166583160156636160156974160167504160167617-0.349000.000000.00034excludedK562HNRNPUL1
SETRIM59ENSG00000213186.3chr3-160166513160166583160153290160156974160167504160167617-0.187000.002670.07054excludedK562UTP18
SETRIM59ENSG00000213186.3chr3-160166513160166583160156636160156974160167504160167617-0.278000.000000.00002excludedK562RBM15
SETRIM59ENSG00000213186.3chr3-160166513160166583160156636160156974160167504160167617-0.328000.000000.00000excludedK562AGGF1
SETRIM59ENSG00000213186.3chr3-1601665131601665831601566361601569741601675041601676170.334000.000000.00221includedK562NCBP2
SETRIM59ENSG00000213186.3chr3-1601665131601665831601566361601569741601675041601676170.319000.000070.00503includedK562PTBP1
SETRIM59ENSG00000213186.3chr3-160166513160166583160156636160156974160167504160167617-0.313000.000000.00296excludedK562NPM1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRIM59 is not avaliable on ENCORE database.